Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80257.t1 | XP_013443275.1 | 97.9 | 333 | 7 | 0 | 1 | 333 | 66 | 398 | 1.30E-176 | 629 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80257.t1 | Q9VR91 | 31.5 | 273 | 127 | 5 | 14 | 282 | 4124 | 4340 | 6.1e-31 | 136.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80257.t1 | A0A072TUS6 | 97.9 | 333 | 7 | 0 | 1 | 333 | 66 | 398 | 9.0e-177 | 629.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene80257 | 0.807388 | 5.18E-50 | -1.69E-46 |
| MS.gene049190 | MS.gene80257 | 0.828363 | 9.37E-55 | -1.69E-46 |
| MS.gene049255 | MS.gene80257 | 0.817755 | 2.80E-52 | -1.69E-46 |
| MS.gene049341 | MS.gene80257 | 0.849379 | 3.36E-60 | -1.69E-46 |
| MS.gene049807 | MS.gene80257 | 0.806764 | 7.02E-50 | -1.69E-46 |
| MS.gene049808 | MS.gene80257 | 0.816337 | 5.83E-52 | -1.69E-46 |
| MS.gene049821 | MS.gene80257 | 0.83942 | 1.60E-57 | -1.69E-46 |
| MS.gene049824 | MS.gene80257 | 0.819401 | 1.18E-52 | -1.69E-46 |
| MS.gene049825 | MS.gene80257 | 0.839039 | 2.01E-57 | -1.69E-46 |
| MS.gene049873 | MS.gene80257 | 0.810234 | 1.28E-50 | -1.69E-46 |
| MS.gene050020 | MS.gene80257 | 0.84003 | 1.11E-57 | -1.69E-46 |
| MS.gene050241 | MS.gene80257 | 0.804008 | 2.65E-49 | -1.69E-46 |
| MS.gene050689 | MS.gene80257 | 0.828343 | 9.48E-55 | -1.69E-46 |
| MS.gene050807 | MS.gene80257 | 0.837668 | 4.54E-57 | -1.69E-46 |
| MS.gene050808 | MS.gene80257 | 0.818732 | 1.68E-52 | -1.69E-46 |
| MS.gene050838 | MS.gene80257 | 0.803054 | 4.19E-49 | -1.69E-46 |
| MS.gene051247 | MS.gene80257 | 0.805398 | 1.36E-49 | -1.69E-46 |
| MS.gene051279 | MS.gene80257 | 0.833131 | 6.36E-56 | -1.69E-46 |
| MS.gene051328 | MS.gene80257 | 0.829305 | 5.55E-55 | -1.69E-46 |
| MS.gene05157 | MS.gene80257 | 0.816689 | 4.86E-52 | -1.69E-46 |
| MS.gene051700 | MS.gene80257 | 0.803347 | 3.64E-49 | -1.69E-46 |
| MS.gene051719 | MS.gene80257 | 0.846169 | 2.57E-59 | -1.69E-46 |
| MS.gene051720 | MS.gene80257 | 0.843376 | 1.46E-58 | -1.69E-46 |
| MS.gene051957 | MS.gene80257 | 0.834084 | 3.68E-56 | -1.69E-46 |
| MS.gene052020 | MS.gene80257 | 0.809285 | 2.04E-50 | -1.69E-46 |
| MS.gene052133 | MS.gene80257 | 0.852451 | 4.58E-61 | -1.69E-46 |
| MS.gene052335 | MS.gene80257 | 0.809375 | 1.95E-50 | -1.69E-46 |
| MS.gene052397 | MS.gene80257 | 0.805117 | 1.56E-49 | -1.69E-46 |
| MS.gene052516 | MS.gene80257 | 0.846723 | 1.82E-59 | -1.69E-46 |
| MS.gene052665 | MS.gene80257 | 0.836665 | 8.19E-57 | -1.69E-46 |
| MS.gene052863 | MS.gene80257 | 0.807001 | 6.26E-50 | -1.69E-46 |
| MS.gene052879 | MS.gene80257 | 0.833669 | 4.67E-56 | -1.69E-46 |
| MS.gene052880 | MS.gene80257 | 0.814162 | 1.77E-51 | -1.69E-46 |
| MS.gene052896 | MS.gene80257 | 0.816242 | 6.12E-52 | -1.69E-46 |
| MS.gene052947 | MS.gene80257 | 0.804302 | 2.31E-49 | -1.69E-46 |
| MS.gene053144 | MS.gene80257 | 0.819851 | 9.35E-53 | -1.69E-46 |
| MS.gene053226 | MS.gene80257 | 0.816874 | 4.42E-52 | -1.69E-46 |
| MS.gene053563 | MS.gene80257 | 0.801708 | 7.93E-49 | -1.69E-46 |
| MS.gene053581 | MS.gene80257 | 0.837809 | 4.17E-57 | -1.69E-46 |
| MS.gene053597 | MS.gene80257 | 0.838958 | 2.11E-57 | -1.69E-46 |
| MS.gene053599 | MS.gene80257 | 0.853574 | 2.18E-61 | -1.69E-46 |
| MS.gene05364 | MS.gene80257 | 0.837236 | 5.85E-57 | -1.69E-46 |
| MS.gene053678 | MS.gene80257 | 0.835911 | 1.27E-56 | -1.69E-46 |
| MS.gene054250 | MS.gene80257 | 0.823076 | 1.68E-53 | -1.69E-46 |
| MS.gene054584 | MS.gene80257 | 0.812416 | 4.29E-51 | -1.69E-46 |
| MS.gene05462 | MS.gene80257 | 0.80893 | 2.43E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene80257 | 0.805895 | 1.07E-49 | -1.69E-46 |
| MS.gene055162 | MS.gene80257 | 0.823323 | 1.47E-53 | -1.69E-46 |
| MS.gene055465 | MS.gene80257 | 0.87365 | 1.25E-67 | -1.69E-46 |
| MS.gene055466 | MS.gene80257 | 0.867201 | 1.63E-65 | -1.69E-46 |
| MS.gene055468 | MS.gene80257 | 0.860264 | 2.33E-63 | -1.69E-46 |
| MS.gene055469 | MS.gene80257 | 0.810788 | 9.68E-51 | -1.69E-46 |
| MS.gene055512 | MS.gene80257 | 0.853582 | 2.17E-61 | -1.69E-46 |
| MS.gene055580 | MS.gene80257 | -0.852813 | 3.61E-61 | -1.69E-46 |
| MS.gene055778 | MS.gene80257 | 0.838014 | 3.70E-57 | -1.69E-46 |
| MS.gene055890 | MS.gene80257 | 0.808308 | 3.30E-50 | -1.69E-46 |
| MS.gene055891 | MS.gene80257 | 0.835117 | 2.02E-56 | -1.69E-46 |
| MS.gene056005 | MS.gene80257 | 0.804861 | 1.76E-49 | -1.69E-46 |
| MS.gene056043 | MS.gene80257 | -0.837566 | 4.82E-57 | -1.69E-46 |
| MS.gene056069 | MS.gene80257 | -0.802409 | 5.69E-49 | -1.69E-46 |
| MS.gene057060 | MS.gene80257 | 0.811734 | 6.04E-51 | -1.69E-46 |
| MS.gene057287 | MS.gene80257 | 0.836185 | 1.09E-56 | -1.69E-46 |
| MS.gene057693 | MS.gene80257 | 0.816211 | 6.22E-52 | -1.69E-46 |
| MS.gene057694 | MS.gene80257 | 0.80431 | 2.30E-49 | -1.69E-46 |
| MS.gene057705 | MS.gene80257 | 0.844989 | 5.37E-59 | -1.69E-46 |
| MS.gene057915 | MS.gene80257 | 0.812767 | 3.59E-51 | -1.69E-46 |
| MS.gene058087 | MS.gene80257 | 0.822941 | 1.81E-53 | -1.69E-46 |
| MS.gene058625 | MS.gene80257 | 0.837694 | 4.47E-57 | -1.69E-46 |
| MS.gene058798 | MS.gene80257 | 0.800346 | 1.50E-48 | -1.69E-46 |
| MS.gene05954 | MS.gene80257 | 0.811042 | 8.53E-51 | -1.69E-46 |
| MS.gene059625 | MS.gene80257 | 0.815274 | 1.01E-51 | -1.69E-46 |
| MS.gene05978 | MS.gene80257 | 0.828941 | 6.80E-55 | -1.69E-46 |
| MS.gene059937 | MS.gene80257 | 0.808497 | 3.01E-50 | -1.69E-46 |
| MS.gene060194 | MS.gene80257 | 0.833843 | 4.22E-56 | -1.69E-46 |
| MS.gene060429 | MS.gene80257 | 0.80289 | 4.53E-49 | -1.69E-46 |
| MS.gene060519 | MS.gene80257 | 0.801562 | 8.49E-49 | -1.69E-46 |
| MS.gene060587 | MS.gene80257 | 0.875417 | 3.13E-68 | -1.69E-46 |
| MS.gene060918 | MS.gene80257 | 0.802677 | 5.01E-49 | -1.69E-46 |
| MS.gene061176 | MS.gene80257 | 0.81797 | 2.50E-52 | -1.69E-46 |
| MS.gene061177 | MS.gene80257 | 0.816755 | 4.70E-52 | -1.69E-46 |
| MS.gene061178 | MS.gene80257 | 0.81742 | 3.33E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 0 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 43355 | gene | 7779 | 15059 | 7779 | ID=MS.gene80257 |
| 43355 | mRNA | 7779 | 15059 | 7779 | ID=MS.gene80257.t1;Parent=MS.gene80257 |
| 43355 | exon | 14975 | 15059 | 14975 | ID=MS.gene80257.t1.exon1;Parent=MS.gene80257.t1 |
| 43355 | CDS | 14975 | 15059 | 14975 | ID=cds.MS.gene80257.t1;Parent=MS.gene80257.t1 |
| 43355 | exon | 14519 | 14579 | 14519 | ID=MS.gene80257.t1.exon2;Parent=MS.gene80257.t1 |
| 43355 | CDS | 14519 | 14579 | 14519 | ID=cds.MS.gene80257.t1;Parent=MS.gene80257.t1 |
| 43355 | exon | 13765 | 13883 | 13765 | ID=MS.gene80257.t1.exon3;Parent=MS.gene80257.t1 |
| 43355 | CDS | 13765 | 13883 | 13765 | ID=cds.MS.gene80257.t1;Parent=MS.gene80257.t1 |
| 43355 | exon | 12715 | 12800 | 12715 | ID=MS.gene80257.t1.exon4;Parent=MS.gene80257.t1 |
| 43355 | CDS | 12715 | 12800 | 12715 | ID=cds.MS.gene80257.t1;Parent=MS.gene80257.t1 |
| 43355 | exon | 11879 | 12080 | 11879 | ID=MS.gene80257.t1.exon5;Parent=MS.gene80257.t1 |
| 43355 | CDS | 11879 | 12080 | 11879 | ID=cds.MS.gene80257.t1;Parent=MS.gene80257.t1 |
| 43355 | exon | 9384 | 9437 | 9384 | ID=MS.gene80257.t1.exon6;Parent=MS.gene80257.t1 |
| 43355 | CDS | 9384 | 9437 | 9384 | ID=cds.MS.gene80257.t1;Parent=MS.gene80257.t1 |
| 43355 | exon | 8645 | 8758 | 8645 | ID=MS.gene80257.t1.exon7;Parent=MS.gene80257.t1 |
| 43355 | CDS | 8645 | 8758 | 8645 | ID=cds.MS.gene80257.t1;Parent=MS.gene80257.t1 |
| 43355 | exon | 8243 | 8299 | 8243 | ID=MS.gene80257.t1.exon8;Parent=MS.gene80257.t1 |
| 43355 | CDS | 8243 | 8299 | 8243 | ID=cds.MS.gene80257.t1;Parent=MS.gene80257.t1 |
| 43355 | exon | 7779 | 8015 | 7779 | ID=MS.gene80257.t1.exon9;Parent=MS.gene80257.t1 |
| 43355 | CDS | 7779 | 8015 | 7779 | ID=cds.MS.gene80257.t1;Parent=MS.gene80257.t1 |
| Gene Sequence |
| Protein sequence |
