AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene063122

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene063122.t1 MTR_3g117500 97.149 491 10 2 1 491 1 487 0.0 984
MS.gene063122.t1 MTR_8g104820 61.966 468 172 4 27 491 29 493 0.0 601
MS.gene063122.t1 MTR_3g080810 57.602 467 194 3 23 488 30 493 0.0 559
MS.gene063122.t1 MTR_3g010330 57.082 466 191 5 28 491 25 483 0.0 530
MS.gene063122.t1 MTR_4g035975 54.970 493 204 7 6 488 5 489 0.0 523
MS.gene063122.t1 MTR_4g035955 53.361 476 211 6 14 488 1 466 0.0 520
MS.gene063122.t1 MTR_1g088190 56.277 462 181 3 27 488 38 478 0.0 520
MS.gene063122.t1 MTR_4g035930 52.211 475 219 4 14 488 1 467 0.0 516
MS.gene063122.t1 MTR_8g099410 50.427 468 221 6 26 486 26 489 3.76e-164 474
MS.gene063122.t1 MTR_8g099410 50.427 468 221 6 26 486 26 489 9.57e-163 475
MS.gene063122.t1 MTR_5g010000 51.188 463 212 6 27 486 39 490 2.02e-162 469
MS.gene063122.t1 MTR_5g009970 48.180 467 228 6 27 490 40 495 3.76e-156 453
MS.gene063122.t1 MTR_3g080190 47.035 489 245 7 9 489 24 506 1.23e-153 448
MS.gene063122.t1 MTR_5g085730 42.742 496 268 8 3 489 9 497 1.38e-147 432
MS.gene063122.t1 MTR_5g093590 44.196 491 261 7 5 486 12 498 5.84e-145 425
MS.gene063122.t1 MTR_1g037340 47.228 487 241 10 9 489 6 482 1.48e-142 418
MS.gene063122.t1 MTR_3g105230 43.568 482 253 8 3 478 1 469 5.01e-142 417
MS.gene063122.t1 MTR_4g074960 46.681 467 237 6 28 486 28 490 9.69e-142 421
MS.gene063122.t1 MTR_3g023740 44.672 488 250 7 1 486 8 477 4.58e-139 409
MS.gene063122.t1 MTR_5g009970 45.540 426 218 6 68 490 7 421 2.08e-132 390
MS.gene063122.t1 MTR_3g113720 42.827 474 250 10 27 489 56 519 1.39e-120 363
MS.gene063122.t1 MTR_5g009970 44.444 405 211 6 89 490 1 394 6.28e-120 357
MS.gene063122.t1 MTR_8g075990 42.283 473 252 8 29 490 64 526 6.25e-116 352
MS.gene063122.t1 MTR_1g088190 56.352 307 113 3 27 333 38 323 1.13e-108 327
MS.gene063122.t1 MTR_5g009970 44.510 337 174 5 156 490 1 326 2.38e-95 292
MS.gene063122.t1 MTR_2g028480 39.096 509 264 16 10 485 91 586 5.64e-89 285
MS.gene063122.t1 MTR_3g082440 38.193 487 258 17 28 485 116 588 3.92e-86 277
MS.gene063122.t1 MTR_3g090540 35.306 507 290 16 7 485 84 580 3.38e-85 274
MS.gene063122.t1 MTR_7g108925 55.769 156 69 0 333 488 43 198 4.12e-60 197
MS.gene063122.t1 MTR_0393s0050 56.944 144 61 1 333 475 20 163 1.22e-50 171
MS.gene063122.t1 MTR_1g037320 46.243 173 87 3 89 259 1 169 4.71e-33 127
MS.gene063122.t1 MTR_1g037320 49.593 123 60 2 365 486 168 289 4.33e-31 122
MS.gene063122.t1 MTR_4g128810 30.556 252 128 8 243 485 117 330 4.97e-25 106
MS.gene063122.t1 MTR_7g108920 50.538 93 45 1 239 331 86 177 2.04e-20 89.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene063122.t1 AT4G39010 74.468 470 119 1 23 491 24 493 0.0 744
MS.gene063122.t1 AT1G70710 60.081 491 191 3 3 491 1 488 0.0 615
MS.gene063122.t1 AT4G39000 57.819 486 204 1 7 491 4 489 0.0 591
MS.gene063122.t1 AT1G23210 57.230 491 205 3 3 491 1 488 0.0 590
MS.gene063122.t1 AT4G38990 57.377 488 199 4 10 491 8 492 0.0 578
MS.gene063122.t1 AT4G39010 72.253 364 100 1 23 385 24 387 0.0 572
MS.gene063122.t1 AT4G02290 58.874 462 187 2 27 488 51 509 0.0 571
MS.gene063122.t1 AT1G02800 59.660 471 185 3 18 488 33 498 0.0 565
MS.gene063122.t1 AT1G22880 55.144 486 210 4 7 491 3 481 0.0 516
MS.gene063122.t1 AT1G71380 54.545 484 211 5 8 490 5 480 5.94e-180 513
MS.gene063122.t1 AT4G02290 57.250 400 168 2 89 488 1 397 8.91e-167 477
MS.gene063122.t1 AT4G09740 49.691 485 228 6 12 491 4 477 5.06e-159 460
MS.gene063122.t1 AT4G11050 48.632 475 233 6 23 490 21 491 8.66e-159 462
MS.gene063122.t1 AT4G11050 48.632 475 233 6 23 490 21 491 7.09e-158 462
MS.gene063122.t1 AT4G11050 48.632 475 233 6 23 490 21 491 9.83e-158 462
MS.gene063122.t1 AT4G23560 48.454 485 237 5 9 491 4 477 6.29e-157 454
MS.gene063122.t1 AT1G64390 48.832 471 230 6 23 486 20 486 1.97e-156 458
MS.gene063122.t1 AT1G22880 55.446 404 172 4 89 491 1 397 1.01e-151 438
MS.gene063122.t1 AT2G32990 44.266 497 258 7 6 486 9 502 5.24e-148 434
MS.gene063122.t1 AT2G44540 46.362 481 245 7 11 486 16 488 3.82e-139 410
MS.gene063122.t1 AT2G44570 47.433 487 240 9 6 486 13 489 6.29e-139 409
MS.gene063122.t1 AT2G44550 46.998 483 240 9 9 486 16 487 8.34e-139 409
MS.gene063122.t1 AT2G44560 46.362 481 245 7 11 486 16 488 1.52e-136 403
MS.gene063122.t1 AT3G43860 45.161 465 240 6 28 490 34 485 5.47e-135 399
MS.gene063122.t1 AT3G43860 45.161 465 240 6 28 490 34 485 5.47e-135 399
MS.gene063122.t1 AT4G38990 55.618 356 129 3 10 364 8 335 2.41e-134 392
MS.gene063122.t1 AT1G48930 47.109 467 236 6 27 486 29 491 2.48e-132 397
MS.gene063122.t1 AT1G75680 45.852 458 231 8 29 479 58 505 6.79e-128 382
MS.gene063122.t1 AT1G19940 42.918 466 249 8 25 483 45 500 7.74e-123 369
MS.gene063122.t1 AT1G19940 42.918 466 249 8 25 483 45 500 7.74e-123 369
MS.gene063122.t1 AT1G22880 54.878 328 140 4 7 333 3 323 9.68e-111 332
MS.gene063122.t1 AT2G44570 43.890 401 210 8 6 401 13 403 6.86e-94 291
MS.gene063122.t1 AT1G19940 42.005 369 201 7 25 386 45 407 6.34e-88 276
MS.gene063122.t1 AT5G49720 37.718 517 276 16 3 485 79 583 7.52e-83 268
MS.gene063122.t1 AT1G65610 35.391 486 274 14 28 486 116 588 6.28e-81 263
MS.gene063122.t1 AT4G24260 36.327 490 268 16 28 486 108 584 1.17e-69 234
MS.gene063122.t1 AT4G24260 34.872 390 214 15 28 386 108 488 6.88e-41 153
MS.gene063122.t1 AT4G24260 36.562 320 168 12 28 319 108 420 1.57e-39 149
MS.gene063122.t1 AT3G42153 42.708 96 47 3 240 331 16 107 7.11e-15 71.2

Find 134 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCGGTGATAACATCAAATT+TGG 0.145877 3.4:+99848275 MS.gene063122:CDS
GAGATTCAACATTTCCTTCT+AGG 0.166797 3.4:-99851280 None:intergenic
CTGTTTGTGTCCATGTCTTC+TGG 0.223582 3.4:-99849456 None:intergenic
TTCAATATGCAGACAGTTAC+AGG 0.227377 3.4:+99849622 MS.gene063122:CDS
ATGTGTGAACTTGATGTTTC+AGG 0.237520 3.4:-99851350 None:intergenic
CATTGCTTTGAATGTAGTTT+AGG 0.285334 3.4:-99850896 None:intergenic
ATAAACATTGCCACAATTGA+TGG 0.289598 3.4:-99851489 None:intergenic
CTCATCTCTACCTTCTATTA+AGG 0.295970 3.4:+99851640 MS.gene063122:CDS
ACAGAAGTGGCGTGGGAATT+CGG 0.323001 3.4:+99848199 MS.gene063122:CDS
TTCTTTGAAGGACAACGTTC+GGG 0.326700 3.4:+99848155 MS.gene063122:CDS
CAGAAGTGGCGTGGGAATTC+GGG 0.333466 3.4:+99848200 MS.gene063122:CDS
TATATTAATGCGCCATTTGT+TGG 0.343277 3.4:+99851821 MS.gene063122:CDS
TTATCTTACATGGTTGGTTA+TGG 0.346424 3.4:+99851584 MS.gene063122:CDS
AAAGCGTTTCTGAGTTCATT+AGG 0.346536 3.4:-99848365 None:intergenic
ATATTAATGCGCCATTTGTT+GGG 0.347405 3.4:+99851822 MS.gene063122:CDS
CCCCTTGGGTTTATCTTACA+TGG 0.349502 3.4:+99851574 MS.gene063122:CDS
CCTAACCCAAATGTTCTTGT+AGG 0.353533 3.4:+99851719 MS.gene063122:CDS
GAGTAATGTCTCAGAATAAC+CGG 0.358072 3.4:-99849580 None:intergenic
CCATCAAAATCACAATAATA+AGG 0.363676 3.4:-99849687 None:intergenic
ATAGCTCCTACAAGAACATT+TGG 0.366293 3.4:-99851725 None:intergenic
TCTCCGGCGACATCGGAAGC+TGG 0.368714 3.4:-99849507 None:intergenic
TGACGTGCGAGATAAGTAAT+TGG 0.370872 3.4:-99851462 None:intergenic
TCGTGGAGTGTGATTGAGTT+TGG 0.383558 3.4:+99848329 MS.gene063122:CDS
TTGTACAGGACGAATTGTTA+TGG 0.396581 3.4:+99850832 MS.gene063122:intron
CCTACAAGAACATTTGGGTT+AGG 0.401102 3.4:-99851719 None:intergenic
CGCACTTGCTGCTTCTTCGA+TGG 0.401999 3.4:+99849539 MS.gene063122:CDS
TATGGGGAGCCGCATGGTTA+AGG 0.403036 3.4:+99850850 MS.gene063122:CDS
GTTCTTTGAAGGACAACGTT+CGG 0.406507 3.4:+99848154 MS.gene063122:CDS
CAGAAGACATGGACACAAAC+AGG 0.408396 3.4:+99849457 MS.gene063122:CDS
TGTACAGGACGAATTGTTAT+GGG 0.417837 3.4:+99850833 MS.gene063122:intron
TCCCACGCCACTTCTGTCTC+TGG 0.419554 3.4:-99848193 None:intergenic
TGTTAGTGCACAAACACTTC+GGG 0.420044 3.4:+99851511 MS.gene063122:CDS
AAGTGCGGCGGCTGTTTCTC+CGG 0.426242 3.4:-99849523 None:intergenic
ACTTACAACACTGATCTTAC+CGG 0.429293 3.4:+99848239 MS.gene063122:CDS
GGGAATTCGGGTTTGAGTGA+TGG 0.430739 3.4:+99848212 MS.gene063122:CDS
CACTTCTGTCTCTGGTCCTC+TGG 0.435129 3.4:-99848185 None:intergenic
CTACTACTGGTGATGCTGAT+TGG 0.435595 3.4:+99848074 MS.gene063122:CDS
GTTGTTGTTTGTTCTACTAC+TGG 0.438724 3.4:+99848061 MS.gene063122:CDS
GGAATTCGGGTTTGAGTGAT+GGG 0.438904 3.4:+99848213 MS.gene063122:CDS
GCGACATCGGAAGCTGGGTT+AGG 0.440796 3.4:-99849501 None:intergenic
TTGTTATAGGAAGTCCTAGA+AGG 0.447365 3.4:+99851266 MS.gene063122:intron
CAACAGATTGCTTGCAAGGA+AGG 0.449168 3.4:+99851671 MS.gene063122:CDS
GGCTGTTTCTCCGGCGACAT+CGG 0.450417 3.4:-99849514 None:intergenic
TTGGGTTTATCTTACATGGT+TGG 0.457905 3.4:+99851578 MS.gene063122:CDS
AATGTAATCAACTTGTCTCT+TGG 0.459625 3.4:-99851540 None:intergenic
CAGTGACAATGCTGATGTTA+AGG 0.460357 3.4:+99849653 MS.gene063122:CDS
ATTACTCAGAAATGCTGTTA+AGG 0.461567 3.4:+99849596 MS.gene063122:CDS
ACGCTTTGGTCGCAATTCGT+TGG 0.466420 3.4:+99848381 MS.gene063122:CDS
GGAGCTATTGTGGGAGGACC+TGG 0.473308 3.4:+99851740 MS.gene063122:CDS
ATGGTTAAGGAGGGCTACTC+AGG 0.477602 3.4:+99850863 MS.gene063122:CDS
TAGCTCCTACAAGAACATTT+GGG 0.479600 3.4:-99851724 None:intergenic
TTATACTTCCAAAATGGCAT+TGG 0.482936 3.4:+99848028 None:intergenic
TAATGAACTCAGAAACGCTT+TGG 0.483275 3.4:+99848367 MS.gene063122:CDS
AAGGCAATCATGTTCTTTGA+AGG 0.484150 3.4:+99848143 MS.gene063122:CDS
GAAGACAACATTAATGAGTT+CGG 0.484613 3.4:+99850936 MS.gene063122:CDS
TGAGGATGGTCCTTAATAGA+AGG 0.486620 3.4:-99851650 None:intergenic
CAACAGTTGTGGTCTGAGGT+TGG 0.488075 3.4:-99849426 None:intergenic
CTCCGGCGACATCGGAAGCT+GGG 0.490926 3.4:-99849506 None:intergenic
CCGGTGATAACATCAAATTT+GGG 0.494860 3.4:+99848276 MS.gene063122:CDS
ACAACATTAATGAGTTCGGT+TGG 0.496036 3.4:+99850940 MS.gene063122:CDS
TTCGATGGCATTCCGATCAT+CGG 0.503475 3.4:+99849554 MS.gene063122:CDS
TGTTGTAAGTTGCTTCCACC+TGG 0.503502 3.4:-99851404 None:intergenic
AACCTCAGACCACAACTGTT+GGG 0.503584 3.4:+99849428 MS.gene063122:CDS
CTCCCAACAGTTGTGGTCTG+AGG 0.506354 3.4:-99849430 None:intergenic
TGTTCTTGTAGGAGCTATTG+TGG 0.507021 3.4:+99851730 MS.gene063122:CDS
CCCAAATTTGATGTTATCAC+CGG 0.511014 3.4:-99848276 None:intergenic
TATGCTAAAACCCCAACAAA+TGG 0.511723 3.4:-99851833 None:intergenic
CAACCTCAGACCACAACTGT+TGG 0.514008 3.4:+99849427 MS.gene063122:CDS
CCTCAACGTTCTTGTCTCCA+AGG 0.518942 3.4:+99850980 MS.gene063122:CDS
ATGATGTTTATGTGGATGAC+AGG 0.521412 3.4:+99851768 MS.gene063122:CDS
CAACATTAATGAGTTCGGTT+GGG 0.522809 3.4:+99850941 MS.gene063122:CDS
CTGGCCTCTCCCAACAGTTG+TGG 0.526446 3.4:-99849437 None:intergenic
ATGTTAGTGCACAAACACTT+CGG 0.530340 3.4:+99851510 MS.gene063122:CDS
TCCTCAACAGATTGCTTGCA+AGG 0.531094 3.4:+99851667 MS.gene063122:CDS
AAATGGCGCATTAATATATG+TGG 0.534377 3.4:-99851816 None:intergenic
CTAAACTACATTCAAAGCAA+TGG 0.537231 3.4:+99850897 MS.gene063122:CDS
GGGGAGCCGCATGGTTAAGG+AGG 0.537973 3.4:+99850853 MS.gene063122:CDS
CATCAAATTTGGGTTTCCGA+TGG 0.547688 3.4:+99848286 MS.gene063122:CDS
GACCAGAGACAGAAGTGGCG+TGG 0.550720 3.4:+99848191 MS.gene063122:CDS
AATAACCGGGATCCGATGAT+CGG 0.551697 3.4:-99849566 None:intergenic
GTTCTTGTAGGAGCTATTGT+GGG 0.555313 3.4:+99851731 MS.gene063122:CDS
TCCTTGCAAGCAATCTGTTG+AGG 0.555459 3.4:-99851668 None:intergenic
TCAATATGCAGACAGTTACA+GGG 0.557642 3.4:+99849623 MS.gene063122:CDS
TCACACATCGAGTACACTCC+TGG 0.560468 3.4:+99851365 MS.gene063122:CDS
TTGGGAGAGGCCAGAAGACA+TGG 0.561765 3.4:+99849446 MS.gene063122:CDS
GGTTGGGACAACAAGCATGC+TGG 0.562101 3.4:+99850957 MS.gene063122:CDS
ATTGTTGTCGTAAACGCCAT+CGG 0.566271 3.4:-99848302 None:intergenic
ACATAAACATCATCTTCTCC+AGG 0.567710 3.4:-99851758 None:intergenic
TATTAATGCGCCATTTGTTG+GGG 0.570106 3.4:+99851823 MS.gene063122:CDS
ACCAGAGACAGAAGTGGCGT+GGG 0.571423 3.4:+99848192 MS.gene063122:CDS
CTACTGGTGATGCTGATTGG+AGG 0.572389 3.4:+99848077 MS.gene063122:CDS
ATTCGGGTTTGAGTGATGGG+TGG 0.574191 3.4:+99848216 MS.gene063122:CDS
CAAAGCAATGGTAAAACACT+CGG 0.575426 3.4:+99850909 MS.gene063122:CDS
ACCGGCGGTTACTACGACGC+CGG 0.576662 3.4:+99848257 MS.gene063122:CDS
AACCCAGCTTCCGATGTCGC+CGG 0.578286 3.4:+99849504 MS.gene063122:CDS
GGCGCATTAATATATGTGGT+TGG 0.580585 3.4:-99851812 None:intergenic
CTTGTAGGAGCTATTGTGGG+AGG 0.586975 3.4:+99851734 MS.gene063122:CDS
TGGAGAAGATGATGTTTATG+TGG 0.587154 3.4:+99851760 MS.gene063122:CDS
TGCAAGCAATCTGTTGAGGA+TGG 0.591228 3.4:-99851664 None:intergenic
CATCGAAGAAGCAGCAAGTG+CGG 0.597641 3.4:-99849538 None:intergenic
AATTGTTATGGGGAGCCGCA+TGG 0.602591 3.4:+99850844 MS.gene063122:CDS
GCATAGGAAGCTCTCTGCTG+AGG 0.604029 3.4:-99851318 None:intergenic
GCATTCCGATCATCGGATCC+CGG 0.607253 3.4:+99849561 MS.gene063122:CDS
GGTCTGTATATGAGTCCACC+AGG 0.612971 3.4:-99851383 None:intergenic
TTTCAGGTAGTAGTGTGCAT+AGG 0.626912 3.4:-99851334 None:intergenic
CGAAGAAGCAGCAAGTGCGG+CGG 0.628435 3.4:-99849535 None:intergenic
GCGTTTCTGAGTTCATTAGG+AGG 0.634386 3.4:-99848362 None:intergenic
AACCATGTAAGATAAACCCA+AGG 0.635575 3.4:-99851576 None:intergenic
AATTGGCGTAGACTAACTCA+AGG 0.637923 3.4:-99851445 None:intergenic
CAGACCACAACTGTTGGGAG+AGG 0.640454 3.4:+99849433 MS.gene063122:CDS
CAGAGGACCAGAGACAGAAG+TGG 0.641335 3.4:+99848186 MS.gene063122:CDS
ACCATGTAAGATAAACCCAA+GGG 0.641726 3.4:-99851575 None:intergenic
ACGTCACAAACCATCAATTG+TGG 0.642957 3.4:+99851479 MS.gene063122:CDS
TACAACACTGATCTTACCGG+CGG 0.646779 3.4:+99848242 MS.gene063122:CDS
TTACGACAACAATGTTGTCG+TGG 0.652135 3.4:+99848312 MS.gene063122:CDS
GACAATGCTGATGTTAAGGA+TGG 0.656075 3.4:+99849657 MS.gene063122:CDS
ACCGGCGTCGTAGTAACCGC+CGG 0.660182 3.4:-99848258 None:intergenic
AGTAATGTCTCAGAATAACC+GGG 0.665758 3.4:-99849579 None:intergenic
GTACAGGACGAATTGTTATG+GGG 0.670217 3.4:+99850834 MS.gene063122:intron
TTATGCGGAGGCATTATCGA+AGG 0.671544 3.4:+99848124 MS.gene063122:CDS
CACATCGAGTACACTCCTGG+TGG 0.672404 3.4:+99851368 MS.gene063122:CDS
TCTTTGAAGGACAACGTTCG+GGG 0.677942 3.4:+99848156 MS.gene063122:CDS
GGTGGACTCATATACAGACC+AGG 0.680214 3.4:+99851386 MS.gene063122:CDS
GGGAGCCGCATGGTTAAGGA+GGG 0.683185 3.4:+99850854 MS.gene063122:CDS
CAATATGCAGACAGTTACAG+GGG 0.695263 3.4:+99849624 MS.gene063122:CDS
CCACGATGATGAATACGTTG+TGG 0.695422 3.4:-99851617 None:intergenic
TGTGAATGCACATGATTATG+CGG 0.701086 3.4:+99848109 MS.gene063122:CDS
GGACTCATATACAGACCAGG+TGG 0.718917 3.4:+99851389 MS.gene063122:CDS
CCTTGGAGACAAGAACGTTG+AGG 0.724038 3.4:-99850980 None:intergenic
CCACAACGTATTCATCATCG+TGG 0.724350 3.4:+99851617 MS.gene063122:CDS
TGATGTTTATGTGGATGACA+GGG 0.726322 3.4:+99851769 MS.gene063122:CDS
CCATGTAAGATAAACCCAAG+GGG 0.735452 3.4:-99851574 None:intergenic
AGTAGCCCTCCTTAACCATG+CGG 0.745611 3.4:-99850859 None:intergenic
GAATGCACATGATTATGCGG+AGG 0.747781 3.4:+99848112 MS.gene063122:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTAGATATATCAAAAAA+TGG + chr3.4:99849318-99849337 MS.gene063122:intron 10.0%
!! ATTAGTTAATTAATTAAAAG+TGG + chr3.4:99850506-99850525 MS.gene063122:intron 10.0%
!! ATTCTCATTAATTTAAAAAT+TGG - chr3.4:99849269-99849288 None:intergenic 10.0%
!! TTAATCAAAAAAGAAATTTA+CGG + chr3.4:99848644-99848663 MS.gene063122:intron 10.0%
!!! TAAATTTCTTTTTTGATTAA+GGG - chr3.4:99848644-99848663 None:intergenic 10.0%
!!! TTCTAATAATAAATACTTTT+TGG + chr3.4:99850078-99850097 MS.gene063122:intron 10.0%
!! AAATAAATAAATAAAGGAAG+AGG - chr3.4:99848579-99848598 None:intergenic 15.0%
!! TCATTAATTTAAAAATTGGA+TGG - chr3.4:99849265-99849284 None:intergenic 15.0%
!! TGTCATGTAATTTAATAATT+AGG - chr3.4:99849378-99849397 None:intergenic 15.0%
!!! AATTTGCTTATAAAAAGAAA+AGG + chr3.4:99848898-99848917 MS.gene063122:intron 15.0%
!!! AATTTGCTTATAAAAAGAAA+CGG - chr3.4:99848917-99848898 None:intergenic 15.0%
!!! GAATTTAGAATTATAAAAAC+AGG + chr3.4:99850117-99850136 MS.gene063122:intron 15.0%
!!! GTAAATTTCTTTTTTGATTA+AGG - chr3.4:99848645-99848664 None:intergenic 15.0%
!! AAAATTCAAAACGATAACAT+CGG - chr3.4:99849789-99849808 None:intergenic 20.0%
!! AAATTTGAATTGAATAGAGA+TGG - chr3.4:99851008-99851027 None:intergenic 20.0%
!! AACAAAAAAAAAACTGAAAG+CGG - chr3.4:99848752-99848771 None:intergenic 20.0%
!! CCTAAATCAATTTATTGAAA+TGG + chr3.4:99848671-99848690 MS.gene063122:intron 20.0%
!! GTATTCATTTCATATCATAT+GGG + chr3.4:99850008-99850027 MS.gene063122:intron 20.0%
!! TAAATTGAATAGTGCATATT+TGG - chr3.4:99850342-99850361 None:intergenic 20.0%
!! TAAGGTTTGAAAAATATAAG+CGG + chr3.4:99850192-99850211 MS.gene063122:intron 20.0%
!! TATTAGAAATTGAGTGTAAA+AGG - chr3.4:99850066-99850085 None:intergenic 20.0%
!! TGTATTCATTTCATATCATA+TGG + chr3.4:99850007-99850026 MS.gene063122:intron 20.0%
!! TTGTTCACATTTAGAAATAT+AGG + chr3.4:99848767-99848786 MS.gene063122:intron 20.0%
!!! ACATTGATAATGATAGTATA+TGG + chr3.4:99849820-99849839 MS.gene063122:intron 20.0%
!!! AGTAAATGAATTGTTGTTAT+AGG + chr3.4:99851253-99851272 MS.gene063122:intron 20.0%
!!! ATTGCATTTTTCCTTTTTAT+AGG + chr3.4:99849760-99849779 MS.gene063122:intron 20.0%
!!! CCATTTCAATAAATTGATTT+AGG - chr3.4:99848674-99848693 None:intergenic 20.0%
!!! TCAAAATCATCATTTTTCTT+AGG - chr3.4:99848966-99848985 None:intergenic 20.0%
! AAATAAATAAAGGAAGAGGA+AGG - chr3.4:99848575-99848594 None:intergenic 25.0%
! CAATCAACATCGAATTATAT+AGG + chr3.4:99850637-99850656 MS.gene063122:intron 25.0%
! CATTCAATTAATGATGTATG+TGG + chr3.4:99848834-99848853 MS.gene063122:intron 25.0%
! CATTCAATTAATGATGTATG+TGG - chr3.4:99848853-99848834 None:intergenic 25.0%
! CCATCAAAATCACAATAATA+AGG - chr3.4:99849690-99849709 None:intergenic 25.0%
! GATCGTAAATGTAAATAAAC+TGG - chr3.4:99848730-99848749 None:intergenic 25.0%
! GTATACAGTTATAATCGAAA+CGG - chr3.4:99849209-99849228 None:intergenic 25.0%
! TATTACTAGTACTATGTGAA+GGG + chr3.4:99850700-99850719 MS.gene063122:intron 25.0%
! TGCTTATAAAAAGAAAAGGA+GGG + chr3.4:99848902-99848921 MS.gene063122:intron 25.0%
! TGTAGTGATGACAAAAATAA+AGG - chr3.4:99848995-99849014 None:intergenic 25.0%
! TTATTACTAGTACTATGTGA+AGG + chr3.4:99850699-99850718 MS.gene063122:intron 25.0%
! TTGCTTATAAAAAGAAAAGG+AGG + chr3.4:99848901-99848920 MS.gene063122:intron 25.0%
!! CCTTATTATTGTGATTTTGA+TGG + chr3.4:99849687-99849706 MS.gene063122:CDS 25.0%
!! CTATTTGCTACACTATTAAT+TGG + chr3.4:99850794-99850813 MS.gene063122:intron 25.0%
!!! AAATGGTTGATGACAAAATT+TGG + chr3.4:99849335-99849354 MS.gene063122:intron 25.0%
!!! AGACAAGTTGATTACATTTT+AGG + chr3.4:99851545-99851564 MS.gene063122:CDS 25.0%
!!! TATTTTTGTCATCACTACAA+AGG + chr3.4:99848996-99849015 MS.gene063122:intron 25.0%
AAATGGCGCATTAATATATG+TGG - chr3.4:99851819-99851838 None:intergenic 30.0%
AACATCGGATACCTATAAAA+AGG - chr3.4:99849774-99849793 None:intergenic 30.0%
AACTATACTACTTACTAACC+TGG - chr3.4:99849716-99849735 None:intergenic 30.0%
AATGTAATCAACTTGTCTCT+TGG - chr3.4:99851543-99851562 None:intergenic 30.0%
ACAACAAAGCTTCTGTAAAA+CGG - chr3.4:99850278-99850297 None:intergenic 30.0%
ACAATTTACTACTGAATCGT+TGG + chr3.4:99848460-99848479 MS.gene063122:intron 30.0%
ACATTGTACATGCTACTATT+AGG + chr3.4:99849395-99849414 MS.gene063122:intron 30.0%
AGTTATAATCGAAACGGAAA+TGG - chr3.4:99849203-99849222 None:intergenic 30.0%
ATAAACATTGCCACAATTGA+TGG - chr3.4:99851492-99851511 None:intergenic 30.0%
ATATTAATGCGCCATTTGTT+GGG + chr3.4:99851822-99851841 MS.gene063122:CDS 30.0%
ATTACTAGTACTATGTGAAG+GGG + chr3.4:99850701-99850720 MS.gene063122:intron 30.0%
ATTACTCAGAAATGCTGTTA+AGG + chr3.4:99849596-99849615 MS.gene063122:CDS 30.0%
ATTGTACCTGAACAAAAATG+CGG - chr3.4:99848445-99848464 None:intergenic 30.0%
CAATTAATGATGTATGTGGT+AGG - chr3.4:99848857-99848838 None:intergenic 30.0%
CAATTTACTACTGAATCGTT+GGG + chr3.4:99848461-99848480 MS.gene063122:intron 30.0%
CTAAACTACATTCAAAGCAA+TGG + chr3.4:99850897-99850916 MS.gene063122:CDS 30.0%
GAAGACAACATTAATGAGTT+CGG + chr3.4:99850936-99850955 MS.gene063122:CDS 30.0%
GTTTGAAAAATATAAGCGGT+GGG + chr3.4:99850196-99850215 MS.gene063122:intron 30.0%
TAGAAATTGAGTGTAAAAGG+TGG - chr3.4:99850063-99850082 None:intergenic 30.0%
TATATTAATGCGCCATTTGT+TGG + chr3.4:99851821-99851840 MS.gene063122:CDS 30.0%
TGCTACACTATTAATTGGTT+TGG + chr3.4:99850799-99850818 MS.gene063122:intron 30.0%
TTGCTTATAAAAAGAAACGG+AGG - chr3.4:99848798-99848817 None:intergenic 30.0%
TTGGATACATTACATTGTAC+AGG + chr3.4:99850818-99850837 MS.gene063122:intron 30.0%
! AATTGCATCTCGAGAATTTT+TGG + chr3.4:99850583-99850602 MS.gene063122:intron 30.0%
! ACAAGTGATTTTGCGAAATA+AGG + chr3.4:99850174-99850193 MS.gene063122:intron 30.0%
! ATTTCATATCATATGGGCTA+TGG + chr3.4:99850014-99850033 MS.gene063122:intron 30.0%
! CATTGCTTTGAATGTAGTTT+AGG - chr3.4:99850899-99850918 None:intergenic 30.0%
! TTATCTTACATGGTTGGTTA+TGG + chr3.4:99851584-99851603 MS.gene063122:CDS 30.0%
!! AAATTTTCCGTGTCATTATG+TGG + chr3.4:99849081-99849100 MS.gene063122:intron 30.0%
!!! TTTGGAATTTTTTGCCAGTT+AGG + chr3.4:99850219-99850238 MS.gene063122:intron 30.0%
AAATCCGAAGCAAACTATTG+TGG + chr3.4:99849935-99849954 MS.gene063122:intron 35.0%
AACCATGTAAGATAAACCCA+AGG - chr3.4:99851579-99851598 None:intergenic 35.0%
AAGGCAATCATGTTCTTTGA+AGG + chr3.4:99848143-99848162 MS.gene063122:CDS 35.0%
AAGGGGTAATATTTGTCTGA+GGG + chr3.4:99850718-99850737 MS.gene063122:intron 35.0%
ACAACATTAATGAGTTCGGT+TGG + chr3.4:99850940-99850959 MS.gene063122:CDS 35.0%
ACATAAACATCATCTTCTCC+AGG - chr3.4:99851761-99851780 None:intergenic 35.0%
ACCATGTAAGATAAACCCAA+GGG - chr3.4:99851578-99851597 None:intergenic 35.0%
ACTTACAACACTGATCTTAC+CGG + chr3.4:99848239-99848258 MS.gene063122:CDS 35.0%
AGTAATGTCTCAGAATAACC+GGG - chr3.4:99849582-99849601 None:intergenic 35.0%
ATAGCTCCTACAAGAACATT+TGG - chr3.4:99851728-99851747 None:intergenic 35.0%
ATGATGTTTATGTGGATGAC+AGG + chr3.4:99851768-99851787 MS.gene063122:CDS 35.0%
ATGTGTGAACTTGATGTTTC+AGG - chr3.4:99851353-99851372 None:intergenic 35.0%
ATGTTAGTGCACAAACACTT+CGG + chr3.4:99851510-99851529 MS.gene063122:CDS 35.0%
ATTGAATAGAGATGGAACCT+TGG - chr3.4:99851000-99851019 None:intergenic 35.0%
CAAAGCAATGGTAAAACACT+CGG + chr3.4:99850909-99850928 MS.gene063122:CDS 35.0%
CAACATTAATGAGTTCGGTT+GGG + chr3.4:99850941-99850960 MS.gene063122:CDS 35.0%
CCCAAATTTGATGTTATCAC+CGG - chr3.4:99848279-99848298 None:intergenic 35.0%
CCGGTGATAACATCAAATTT+GGG + chr3.4:99848276-99848295 MS.gene063122:CDS 35.0%
CTCATCTCTACCTTCTATTA+AGG + chr3.4:99851640-99851659 MS.gene063122:CDS 35.0%
GAGATTCAACATTTCCTTCT+AGG - chr3.4:99851283-99851302 None:intergenic 35.0%
GAGTAATGTCTCAGAATAAC+CGG - chr3.4:99849583-99849602 None:intergenic 35.0%
GGTTTGAAAAATATAAGCGG+TGG + chr3.4:99850195-99850214 MS.gene063122:intron 35.0%
GTAACACTTCCATTATGTGT+CGG - chr3.4:99850560-99850579 None:intergenic 35.0%
TAACACTTCCATTATGTGTC+GGG - chr3.4:99850559-99850578 None:intergenic 35.0%
TAATGAACTCAGAAACGCTT+TGG + chr3.4:99848367-99848386 MS.gene063122:CDS 35.0%
TAGCTCCTACAAGAACATTT+GGG - chr3.4:99851727-99851746 None:intergenic 35.0%
TATGCTAAAACCCCAACAAA+TGG - chr3.4:99851836-99851855 None:intergenic 35.0%
TCAATATGCAGACAGTTACA+GGG + chr3.4:99849623-99849642 MS.gene063122:CDS 35.0%
TGATGTTTATGTGGATGACA+GGG + chr3.4:99851769-99851788 MS.gene063122:CDS 35.0%
TGGAGAAGATGATGTTTATG+TGG + chr3.4:99851760-99851779 MS.gene063122:CDS 35.0%
TGTACAGGACGAATTGTTAT+GGG + chr3.4:99850833-99850852 MS.gene063122:intron 35.0%
TGTACATGCTACTATTAGGT+GGG + chr3.4:99849399-99849418 MS.gene063122:intron 35.0%
TGTGAATGCACATGATTATG+CGG + chr3.4:99848109-99848128 MS.gene063122:CDS 35.0%
TTCAATATGCAGACAGTTAC+AGG + chr3.4:99849622-99849641 MS.gene063122:CDS 35.0%
TTCTTAGGAACGACTAAACA+TGG - chr3.4:99848951-99848970 None:intergenic 35.0%
TTGAAGTCCGTGAATTTCAT+CGG + chr3.4:99849128-99849147 MS.gene063122:intron 35.0%
TTGGGTTTATCTTACATGGT+TGG + chr3.4:99851578-99851597 MS.gene063122:CDS 35.0%
TTGTACAGGACGAATTGTTA+TGG + chr3.4:99850832-99850851 MS.gene063122:intron 35.0%
TTGTACATGCTACTATTAGG+TGG + chr3.4:99849398-99849417 MS.gene063122:intron 35.0%
TTGTTATAGGAAGTCCTAGA+AGG + chr3.4:99851266-99851285 MS.gene063122:intron 35.0%
! AAAAATATAAGCGGTGGGTT+TGG + chr3.4:99850201-99850220 MS.gene063122:intron 35.0%
! AAAGCGTTTCTGAGTTCATT+AGG - chr3.4:99848368-99848387 None:intergenic 35.0%
! TATTAATGCGCCATTTGTTG+GGG + chr3.4:99851823-99851842 MS.gene063122:CDS 35.0%
!! ATTTTAGGTGATAACCCCTT+GGG + chr3.4:99851560-99851579 MS.gene063122:CDS 35.0%
!! GTTGTTGTTTGTTCTACTAC+TGG + chr3.4:99848061-99848080 MS.gene063122:CDS 35.0%
!! TTGTGATTTTGATGGATACC+AGG + chr3.4:99849695-99849714 MS.gene063122:CDS 35.0%
!! TTTGCCACAATAGTTTGCTT+CGG - chr3.4:99849942-99849961 None:intergenic 35.0%
AATTGGCGTAGACTAACTCA+AGG - chr3.4:99851448-99851467 None:intergenic 40.0%
ACGTCACAAACCATCAATTG+TGG + chr3.4:99851479-99851498 MS.gene063122:CDS 40.0%
AGGGCAATTCGTGTATTTAG+TGG + chr3.4:99850737-99850756 MS.gene063122:intron 40.0%
ATAAACTGGCACAGCTATCA+AGG - chr3.4:99848716-99848735 None:intergenic 40.0%
ATGAGTAACACTGCCATGTT+TGG - chr3.4:99849239-99849258 None:intergenic 40.0%
ATTGTTGTCGTAAACGCCAT+CGG - chr3.4:99848305-99848324 None:intergenic 40.0%
CAATATGCAGACAGTTACAG+GGG + chr3.4:99849624-99849643 MS.gene063122:CDS 40.0%
CAGTGACAATGCTGATGTTA+AGG + chr3.4:99849653-99849672 MS.gene063122:CDS 40.0%
CCATGTAAGATAAACCCAAG+GGG - chr3.4:99851577-99851596 None:intergenic 40.0%
CCTAACCCAAATGTTCTTGT+AGG + chr3.4:99851719-99851738 MS.gene063122:CDS 40.0%
GAAGGGGTAATATTTGTCTG+AGG + chr3.4:99850717-99850736 MS.gene063122:intron 40.0%
GACAATGCTGATGTTAAGGA+TGG + chr3.4:99849657-99849676 MS.gene063122:CDS 40.0%
GATGAAATTCACGGACTTCA+AGG - chr3.4:99849129-99849148 None:intergenic 40.0%
GCCGGTGATAACATCAAATT+TGG + chr3.4:99848275-99848294 MS.gene063122:CDS 40.0%
GGCGCATTAATATATGTGGT+TGG - chr3.4:99851815-99851834 None:intergenic 40.0%
GTACAGGACGAATTGTTATG+GGG + chr3.4:99850834-99850853 MS.gene063122:intron 40.0%
GTTCTTGTAGGAGCTATTGT+GGG + chr3.4:99851731-99851750 MS.gene063122:CDS 40.0%
TGACGTGCGAGATAAGTAAT+TGG - chr3.4:99851465-99851484 None:intergenic 40.0%
TGAGGATGGTCCTTAATAGA+AGG - chr3.4:99851653-99851672 None:intergenic 40.0%
TGAGTGTAAAAGGTGGATGT+GGG - chr3.4:99850056-99850075 None:intergenic 40.0%
TGCAAAGCCGATGAAATTCA+CGG - chr3.4:99849138-99849157 None:intergenic 40.0%
TGTTAGTGCACAAACACTTC+GGG + chr3.4:99851511-99851530 MS.gene063122:CDS 40.0%
TGTTCTTGTAGGAGCTATTG+TGG + chr3.4:99851730-99851749 MS.gene063122:CDS 40.0%
TTACGACAACAATGTTGTCG+TGG + chr3.4:99848312-99848331 MS.gene063122:CDS 40.0%
TTGAGTGTAAAAGGTGGATG+TGG - chr3.4:99850057-99850076 None:intergenic 40.0%
! ATATCATATGGGCTATGGCA+TGG + chr3.4:99850019-99850038 MS.gene063122:intron 40.0%
! CATCAAATTTGGGTTTCCGA+TGG + chr3.4:99848286-99848305 MS.gene063122:CDS 40.0%
! CCTACAAGAACATTTGGGTT+AGG - chr3.4:99851722-99851741 None:intergenic 40.0%
! GTCTAACCGCATTTTTGTTC+AGG + chr3.4:99848436-99848455 MS.gene063122:CDS 40.0%
! GTTCTTTGAAGGACAACGTT+CGG + chr3.4:99848154-99848173 MS.gene063122:CDS 40.0%
! TAGAGTGTTTGATCACGTGA+AGG - chr3.4:99849863-99849882 None:intergenic 40.0%
! TATCATATGGGCTATGGCAT+GGG + chr3.4:99850020-99850039 MS.gene063122:intron 40.0%
! TTCTTTGAAGGACAACGTTC+GGG + chr3.4:99848155-99848174 MS.gene063122:CDS 40.0%
! TTTCAGGTAGTAGTGTGCAT+AGG - chr3.4:99851337-99851356 None:intergenic 40.0%
! TTTTGCCAGTTAGGACATGT+CGG + chr3.4:99850228-99850247 MS.gene063122:intron 40.0%
!! CATTTTAGGTGATAACCCCT+TGG + chr3.4:99851559-99851578 MS.gene063122:CDS 40.0%
AACCTCAGACCACAACTGTT+GGG + chr3.4:99849428-99849447 MS.gene063122:CDS 45.0%
AATAACCGGGATCCGATGAT+CGG - chr3.4:99849569-99849588 None:intergenic 45.0%
CAACAGATTGCTTGCAAGGA+AGG + chr3.4:99851671-99851690 MS.gene063122:CDS 45.0%
CAGAAGACATGGACACAAAC+AGG + chr3.4:99849457-99849476 MS.gene063122:CDS 45.0%
CCACAACGTATTCATCATCG+TGG + chr3.4:99851617-99851636 MS.gene063122:CDS 45.0%
CCACGATGATGAATACGTTG+TGG - chr3.4:99851620-99851639 None:intergenic 45.0%
CCCCTTGGGTTTATCTTACA+TGG + chr3.4:99851574-99851593 MS.gene063122:CDS 45.0%
CTCCAGTCCACATAATGACA+CGG - chr3.4:99849091-99849110 None:intergenic 45.0%
CTGTTTGTGTCCATGTCTTC+TGG - chr3.4:99849459-99849478 None:intergenic 45.0%
GAATGCACATGATTATGCGG+AGG + chr3.4:99848112-99848131 MS.gene063122:CDS 45.0%
GCGTTTCTGAGTTCATTAGG+AGG - chr3.4:99848365-99848384 None:intergenic 45.0%
GTTAGGACATGTCGGTGTAA+TGG + chr3.4:99850236-99850255 MS.gene063122:intron 45.0%
TACAACACTGATCTTACCGG+CGG + chr3.4:99848242-99848261 MS.gene063122:CDS 45.0%
TATCAAGGAAGAACGCACGA+TGG - chr3.4:99848701-99848720 None:intergenic 45.0%
TCCTCAACAGATTGCTTGCA+AGG + chr3.4:99851667-99851686 MS.gene063122:CDS 45.0%
TCCTTGCAAGCAATCTGTTG+AGG - chr3.4:99851671-99851690 None:intergenic 45.0%
TCGTGGAGTGTGATTGAGTT+TGG + chr3.4:99848329-99848348 MS.gene063122:CDS 45.0%
TGCAAGCAATCTGTTGAGGA+TGG - chr3.4:99851667-99851686 None:intergenic 45.0%
TGTTGTAAGTTGCTTCCACC+TGG - chr3.4:99851407-99851426 None:intergenic 45.0%
TTACACCGACATGTCCTAAC+TGG - chr3.4:99850236-99850255 None:intergenic 45.0%
TTCGATGGCATTCCGATCAT+CGG + chr3.4:99849554-99849573 MS.gene063122:CDS 45.0%
! CTACTACTGGTGATGCTGAT+TGG + chr3.4:99848074-99848093 MS.gene063122:CDS 45.0%
! GGAATTCGGGTTTGAGTGAT+GGG + chr3.4:99848213-99848232 MS.gene063122:CDS 45.0%
! TCTTTGAAGGACAACGTTCG+GGG + chr3.4:99848156-99848175 MS.gene063122:CDS 45.0%
! TTCCGTGTCATTATGTGGAC+TGG + chr3.4:99849086-99849105 MS.gene063122:intron 45.0%
!! TGTCATTATGTGGACTGGAG+TGG + chr3.4:99849091-99849110 MS.gene063122:intron 45.0%
!! TTATGCGGAGGCATTATCGA+AGG + chr3.4:99848124-99848143 MS.gene063122:CDS 45.0%
!! TGTAATAAATAAATAAATAA+AGG - chr3.4:99848585-99848604 None:intergenic 5.0%
!!! TTTATTTATTTATTACATTT+TGG + chr3.4:99848588-99848607 MS.gene063122:intron 5.0%
AAAAAACAATTCGCCCCCCG+TGG + chr3.4:99851091-99851110 MS.gene063122:intron 50.0%
AAAAACAATTCGCCCCCCGT+GGG + chr3.4:99851092-99851111 MS.gene063122:intron 50.0%
AATTGTTATGGGGAGCCGCA+TGG + chr3.4:99850844-99850863 MS.gene063122:CDS 50.0%
ACAGAAGTGGCGTGGGAATT+CGG + chr3.4:99848199-99848218 MS.gene063122:CDS 50.0%
ACGCTTTGGTCGCAATTCGT+TGG + chr3.4:99848381-99848400 MS.gene063122:CDS 50.0%
AGGAAGAGGAAGGAGTGAGT+AGG - chr3.4:99848565-99848584 None:intergenic 50.0%
AGTAGCCCTCCTTAACCATG+CGG - chr3.4:99850862-99850881 None:intergenic 50.0%
ATGGTTAAGGAGGGCTACTC+AGG + chr3.4:99850863-99850882 MS.gene063122:CDS 50.0%
CAACCTCAGACCACAACTGT+TGG + chr3.4:99849427-99849446 MS.gene063122:CDS 50.0%
CACGTGATCCCGACACATAA+TGG + chr3.4:99850548-99850567 MS.gene063122:intron 50.0%
CATCGAAGAAGCAGCAAGTG+CGG - chr3.4:99849541-99849560 None:intergenic 50.0%
CCTCAACGTTCTTGTCTCCA+AGG + chr3.4:99850980-99850999 MS.gene063122:CDS 50.0%
CCTTGGAGACAAGAACGTTG+AGG - chr3.4:99850983-99851002 None:intergenic 50.0%
CGGACTTCAAGGATACGAAC+TGG - chr3.4:99849118-99849137 None:intergenic 50.0%
CTCTACCAACTGAGCTAGAC+GGG + chr3.4:99851151-99851170 MS.gene063122:intron 50.0%
CTTGTAGGAGCTATTGTGGG+AGG + chr3.4:99851734-99851753 MS.gene063122:CDS 50.0%
GAGTGAGTGAGTGAGAGAAG+TGG - chr3.4:99848527-99848546 None:intergenic 50.0%
GCTCTACCAACTGAGCTAGA+CGG + chr3.4:99851150-99851169 MS.gene063122:intron 50.0%
GCTCTTAACCTTGTGGTCGT+GGG - chr3.4:99851125-99851144 None:intergenic 50.0%
GGACTCATATACAGACCAGG+TGG + chr3.4:99851389-99851408 MS.gene063122:CDS 50.0%
GGTCTGTATATGAGTCCACC+AGG - chr3.4:99851386-99851405 None:intergenic 50.0%
TCACACATCGAGTACACTCC+TGG + chr3.4:99851365-99851384 MS.gene063122:CDS 50.0%
TTGACTCACTCACTCACGGA+CGG + chr3.4:99848484-99848503 MS.gene063122:intron 50.0%
! ACGTTCGGGGTTTTTACCAG+AGG + chr3.4:99848169-99848188 MS.gene063122:CDS 50.0%
! ATTCGGGTTTGAGTGATGGG+TGG + chr3.4:99848216-99848235 MS.gene063122:CDS 50.0%
! CAACAGTTGTGGTCTGAGGT+TGG - chr3.4:99849429-99849448 None:intergenic 50.0%
! CTACTGGTGATGCTGATTGG+AGG + chr3.4:99848077-99848096 MS.gene063122:CDS 50.0%
! GGGAATTCGGGTTTGAGTGA+TGG + chr3.4:99848212-99848231 MS.gene063122:CDS 50.0%
! GGTGGACTCATATACAGACC+AGG + chr3.4:99851386-99851405 MS.gene063122:CDS 50.0%
! TGGGTTGACTCACTCACTCA+CGG + chr3.4:99848480-99848499 MS.gene063122:intron 50.0%
AAAACAATTCGCCCCCCGTG+GGG + chr3.4:99851093-99851112 MS.gene063122:intron 55.0%
ACCAGAGACAGAAGTGGCGT+GGG + chr3.4:99848192-99848211 MS.gene063122:CDS 55.0%
CACATCGAGTACACTCCTGG+TGG + chr3.4:99851368-99851387 MS.gene063122:CDS 55.0%
CACTTCTGTCTCTGGTCCTC+TGG - chr3.4:99848188-99848207 None:intergenic 55.0%
CAGAAGTGGCGTGGGAATTC+GGG + chr3.4:99848200-99848219 MS.gene063122:CDS 55.0%
CAGACCACAACTGTTGGGAG+AGG + chr3.4:99849433-99849452 MS.gene063122:CDS 55.0%
CAGAGGACCAGAGACAGAAG+TGG + chr3.4:99848186-99848205 MS.gene063122:CDS 55.0%
CTCCCAACAGTTGTGGTCTG+AGG - chr3.4:99849433-99849452 None:intergenic 55.0%
GCATAGGAAGCTCTCTGCTG+AGG - chr3.4:99851321-99851340 None:intergenic 55.0%
GCATTCCGATCATCGGATCC+CGG + chr3.4:99849561-99849580 MS.gene063122:CDS 55.0%
GCGCAAGGCTCTTAACCTTG+TGG - chr3.4:99851132-99851151 None:intergenic 55.0%
GGCTCTTAACCTTGTGGTCG+TGG - chr3.4:99851126-99851145 None:intergenic 55.0%
GGTTGGGACAACAAGCATGC+TGG + chr3.4:99850957-99850976 MS.gene063122:CDS 55.0%
GTATACCCACGCGCCAAACA+TGG + chr3.4:99849223-99849242 MS.gene063122:intron 55.0%
TATGGGGAGCCGCATGGTTA+AGG + chr3.4:99850850-99850869 MS.gene063122:CDS 55.0%
TTGGGAGAGGCCAGAAGACA+TGG + chr3.4:99849446-99849465 MS.gene063122:CDS 55.0%
! AACAGCCCGTCTAGCTCAGT+TGG - chr3.4:99851159-99851178 None:intergenic 55.0%
! CGCACTTGCTGCTTCTTCGA+TGG + chr3.4:99849539-99849558 MS.gene063122:CDS 55.0%
!! AGCTCAGTTGGTAGAGCGCA+AGG - chr3.4:99851147-99851166 None:intergenic 55.0%
AACCCAGCTTCCGATGTCGC+CGG + chr3.4:99849504-99849523 MS.gene063122:CDS 60.0%
ACACTGCCATGTTTGGCGCG+TGG - chr3.4:99849232-99849251 None:intergenic 60.0%
CACTGCCATGTTTGGCGCGT+GGG - chr3.4:99849231-99849250 None:intergenic 60.0%
CGAAGAAGCAGCAAGTGCGG+CGG - chr3.4:99849538-99849557 None:intergenic 60.0%
CTGGCCTCTCCCAACAGTTG+TGG - chr3.4:99849440-99849459 None:intergenic 60.0%
GACCAGAGACAGAAGTGGCG+TGG + chr3.4:99848191-99848210 MS.gene063122:CDS 60.0%
GCGACATCGGAAGCTGGGTT+AGG - chr3.4:99849504-99849523 None:intergenic 60.0%
GGAGCTATTGTGGGAGGACC+TGG + chr3.4:99851740-99851759 MS.gene063122:CDS 60.0%
GGGAGCCGCATGGTTAAGGA+GGG + chr3.4:99850854-99850873 MS.gene063122:CDS 60.0%
TCCCACGCCACTTCTGTCTC+TGG - chr3.4:99848196-99848215 None:intergenic 60.0%
!! AAGTGCGGCGGCTGTTTCTC+CGG - chr3.4:99849526-99849545 None:intergenic 60.0%
!! GGCTGTTTCTCCGGCGACAT+CGG - chr3.4:99849517-99849536 None:intergenic 60.0%
ACCGGCGGTTACTACGACGC+CGG + chr3.4:99848257-99848276 MS.gene063122:CDS 65.0%
ACCGGCGTCGTAGTAACCGC+CGG - chr3.4:99848261-99848280 None:intergenic 65.0%
CTCCGGCGACATCGGAAGCT+GGG - chr3.4:99849509-99849528 None:intergenic 65.0%
GGCTCGAACCCACGACCACA+AGG + chr3.4:99851114-99851133 MS.gene063122:intron 65.0%
GGGGAGCCGCATGGTTAAGG+AGG + chr3.4:99850853-99850872 MS.gene063122:CDS 65.0%
TCTCCGGCGACATCGGAAGC+TGG - chr3.4:99849510-99849529 None:intergenic 65.0%
GGTCGTGGGTTCGAGCCCCA+CGG - chr3.4:99851111-99851130 None:intergenic 70.0%
GTCGTGGGTTCGAGCCCCAC+GGG - chr3.4:99851110-99851129 None:intergenic 70.0%
TCGTGGGTTCGAGCCCCACG+GGG - chr3.4:99851109-99851128 None:intergenic 70.0%
CGTGGGTTCGAGCCCCACGG+GGG - chr3.4:99851108-99851127 None:intergenic 75.0%
GTGGGTTCGAGCCCCACGGG+GGG - chr3.4:99851107-99851126 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 99848041 99851871 99848041 ID=MS.gene063122
chr3.4 mRNA 99848041 99851871 99848041 ID=MS.gene063122.t1;Parent=MS.gene063122
chr3.4 exon 99848041 99848457 99848041 ID=MS.gene063122.t1.exon1;Parent=MS.gene063122.t1
chr3.4 CDS 99848041 99848457 99848041 ID=cds.MS.gene063122.t1;Parent=MS.gene063122.t1
chr3.4 exon 99849417 99849716 99849417 ID=MS.gene063122.t1.exon2;Parent=MS.gene063122.t1
chr3.4 CDS 99849417 99849716 99849417 ID=cds.MS.gene063122.t1;Parent=MS.gene063122.t1
chr3.4 exon 99850840 99851001 99850840 ID=MS.gene063122.t1.exon3;Parent=MS.gene063122.t1
chr3.4 CDS 99850840 99851001 99850840 ID=cds.MS.gene063122.t1;Parent=MS.gene063122.t1
chr3.4 exon 99851275 99851871 99851275 ID=MS.gene063122.t1.exon4;Parent=MS.gene063122.t1
chr3.4 CDS 99851275 99851871 99851275 ID=cds.MS.gene063122.t1;Parent=MS.gene063122.t1
Gene Sequence

>MS.gene063122

ATGGCATTGGCGAGCAAATCGTTGTTGTTTGTTCTACTACTGGTGATGCTGATTGGAGGAAGAAGAAGTGTGAATGCACATGATTATGCGGAGGCATTATCGAAGGCAATCATGTTCTTTGAAGGACAACGTTCGGGGTTTTTACCAGAGGACCAGAGACAGAAGTGGCGTGGGAATTCGGGTTTGAGTGATGGGTGGACTTACAACACTGATCTTACCGGCGGTTACTACGACGCCGGTGATAACATCAAATTTGGGTTTCCGATGGCGTTTACGACAACAATGTTGTCGTGGAGTGTGATTGAGTTTGGTGAAAACATGCCTCCTAATGAACTCAGAAACGCTTTGGTCGCAATTCGTTGGAGTACTGATTATTTGCTTAAGACTGTTTCTCAGTCTAACCGCATTTTTGTTCAGGTACAATTTACTACTGAATCGTTGGGTTGACTCACTCACTCACGGACGGTTACATTACACTTTTCACCACTTCTCTCACTCACTCACTCACTCACTCACACGCACCTACTCACTCCTTCCTCTTCCTTTATTTATTTATTTATTACATTTTGGATGCATAATTAGTTTATGTATTTTTTTCATCCCTTAATCAAAAAAGAAATTTACGGTATTCCTAAATCAATTTATTGAAATGGAAAACCATCGTGCGTTCTTCCTTGATAGCTGTGCCAGTTTATTTACATTTACGATCCGCTTTCAGTTTTTTTTTTGTTCACATTTAGAAATATAGGTACTTCCTCCGTTTCTTTTTATAAGCAAATTTAATTTTTAGATTCATTCAATTAATGATGTATGTGGTCCTACCACATACATCATTAATTGAATGAATCTAAAAATTAAATTTGCTTATAAAAAGAAAAGGAGGGAGTAGTAATTTTAGTCATCACTACCATGTTTAGTCGTTCCTAAGAAAAATGATGATTTTGACATTTGCCTTTATTTTTGTCATCACTACAAAGGTTTATGTAAAATACTAATTTGATTTTATTACTACTAAAAACTGAAAGTGCATTTTTAACACAAAATTTTCCGTGTCATTATGTGGACTGGAGTGGACCAGTTCGTATCCTTGAAGTCCGTGAATTTCATCGGCTTTGCATTGCAACTGTCTTCTAAATAAATGCAATATTTCGTTACTTTACCATTTCCGTTTCGATTATAACTGTATACCCACGCGCCAAACATGGCAGTGTTACTCATCTTCCATCCAATTTTTAAATTAATGAGAATTCTTTTCACTTTTGTTTAATCTCAAATTTATATTAGATATATCAAAAAATGGTTGATGACAAAATTTGGATGTGTCTAAATGTTCACCTAATTATTAAATTACATGACATTGTACATGCTACTATTAGGTGGGTGAACCAACCTCAGACCACAACTGTTGGGAGAGGCCAGAAGACATGGACACAAACAGGAAAGTGTATGCTGTTGATGCACCTAACCCAGCTTCCGATGTCGCCGGAGAAACAGCCGCCGCACTTGCTGCTTCTTCGATGGCATTCCGATCATCGGATCCCGGTTATTCTGAGACATTACTCAGAAATGCTGTTAAGGCATTTCAATATGCAGACAGTTACAGGGGCGCATACAGTGACAATGCTGATGTTAAGGATGGTGTCTGTCCTTATTATTGTGATTTTGATGGATACCAGGTTAGTAAGTAGTATAGTTGACTCTTCTTTTCAATTACTATGTATTGCATTTTTCCTTTTTATAGGTATCCGATGTTATCGTTTTGAATTTTCTATTAATAAGACATTGATAATGATAGTATATGGACAATGATATTGCATTGCCTTCACGTGATCAAACACTCTAACTAATTGCTTTAAATTAGTAGATGAACAAATCAATAAGCAAAAGATAATTAAAATCCGAAGCAAACTATTGTGGCAAAATTGAATTATTATAGTACTATACTATGTTAGTTTGTTGCTTTATATGTATTCATTTCATATCATATGGGCTATGGCATGGGAAGTTATTTTCCCACATCCACCTTTTACACTCAATTTCTAATAATAAATACTTTTTGGTTTTATTTCTAATTATGAATTTAGAATTATAAAAACAGGAATTAGAGATAAAGTATAAATAAATGAGAATAAAACAAGTGATTTTGCGAAATAAGGTTTGAAAAATATAAGCGGTGGGTTTGGAATTTTTTGCCAGTTAGGACATGTCGGTGTAATGGATGAAATAACGATGCACCGTTTTACAGAAGCTTTGTTGTTTTTGTCAAAATTACTGTGATTTTTTAAACTCATTGAGAATCCAAATATGCACTATTCAATTTATTATATTATAGCATCTATCTATATATAACTTGTGAACATTTAGCTTATTTTGCGTTTTGTCGCATTGTAGTGTATAGATGATATAAGTTGACGATCGATGACAACTCTGTCTCTAACTGACAATTTGTTTAAGTGAGTGAATGAATTAGTTAATTAATTAAAAGTGGAGTAATTCACTAATTCATTCACGTGATCCCGACACATAATGGAAGTGTTACACTAATTGCATCTCGAGAATTTTTGGCACTGTTCAAAACTGATATATGATTATGCTTCAATCAACATCGAATTATATAGGAAATTGTTTTAATGAAATTTGAGAACAATACTCAATTGATTATTACTAGTACTATGTGAAGGGGTAATATTTGTCTGAGGGCAATTCGTGTATTTAGTGGAATAATAGTAACTTACACTTTGACATGTCAATTGCTATTTGCTACACTATTAATTGGTTTGGATACATTACATTGTACAGGACGAATTGTTATGGGGAGCCGCATGGTTAAGGAGGGCTACTCAGGATGAAAATTTCCTAAACTACATTCAAAGCAATGGTAAAACACTCGGTGCTGAAGACAACATTAATGAGTTCGGTTGGGACAACAAGCATGCTGGCCTCAACGTTCTTGTCTCCAAGGTTCCATCTCTATTCAATTCAAATTTTATTAAAAATAAATCAGTTTAACTTTTATCTTTTTACTAAAATTAAAAAAAAAAAACAAAAAAAAAAAACAATTCGCCCCCCGTGGGGCTCGAACCCACGACCACAAGGTTAAGAGCCTTGCGCTCTACCAACTGAGCTAGACGGGCTGTTTTATTCTTTGTCTTGAAATTGAAATCACACAAATGTATATATGTGACATTGTTTTAATGTAAATGTTGATCAAAAGTAAATGAATTGTTGTTATAGGAAGTCCTAGAAGGAAATGTTGAATCTCTTGAATCTTACAAGACCTCAGCAGAGAGCTTCCTATGCACACTACTACCTGAAACATCAAGTTCACACATCGAGTACACTCCTGGTGGACTCATATACAGACCAGGTGGAAGCAACTTACAACATGCAACTTCAATTGCTTTCCTTGAGTTAGTCTACGCCAATTACTTATCTCGCACGTCACAAACCATCAATTGTGGCAATGTTTATGTTAGTGCACAAACACTTCGGGAGCGTGCCAAGAGACAAGTTGATTACATTTTAGGTGATAACCCCTTGGGTTTATCTTACATGGTTGGTTATGGTAACAATTATCCACAACGTATTCATCATCGTGGCTCATCTCTACCTTCTATTAAGGACCATCCTCAACAGATTGCTTGCAAGGAAGGTTCAATATACTTCAATTCAACAAATCCTAACCCAAATGTTCTTGTAGGAGCTATTGTGGGAGGACCTGGAGAAGATGATGTTTATGTGGATGACAGGGCTGATTATAGAAAATCTGAGCCAACCACATATATTAATGCGCCATTTGTTGGGGTTTTAGCATATTTTGTTGCTAATTAA
Protein sequence

>MS.gene063122.t1

MALASKSLLFVLLLVMLIGGRRSVNAHDYAEALSKAIMFFEGQRSGFLPEDQRQKWRGNSGLSDGWTYNTDLTGGYYDAGDNIKFGFPMAFTTTMLSWSVIEFGENMPPNELRNALVAIRWSTDYLLKTVSQSNRIFVQVGEPTSDHNCWERPEDMDTNRKVYAVDAPNPASDVAGETAAALAASSMAFRSSDPGYSETLLRNAVKAFQYADSYRGAYSDNADVKDGVCPYYCDFDGYQDELLWGAAWLRRATQDENFLNYIQSNGKTLGAEDNINEFGWDNKHAGLNVLVSKEVLEGNVESLESYKTSAESFLCTLLPETSSSHIEYTPGGLIYRPGGSNLQHATSIAFLELVYANYLSRTSQTINCGNVYVSAQTLRERAKRQVDYILGDNPLGLSYMVGYGNNYPQRIHHRGSSLPSIKDHPQQIACKEGSIYFNSTNPNPNVLVGAIVGGPGEDDVYVDDRADYRKSEPTTYINAPFVGVLAYFVAN