Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21633.t1 | XP_003611057.1 | 96.7 | 487 | 16 | 0 | 1 | 487 | 16 | 502 | 3.80E-275 | 956.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21633.t1 | P22503 | 80.1 | 477 | 95 | 0 | 5 | 481 | 19 | 495 | 7.1e-230 | 797.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21633.t1 | G7KBZ9 | 96.7 | 487 | 16 | 0 | 1 | 487 | 16 | 502 | 2.7e-275 | 956.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene055549 | MS.gene21633 | 0.829377 | 5.33E-55 | -1.69E-46 |
MS.gene055550 | MS.gene21633 | 0.833105 | 6.46E-56 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21633.t1 | MTR_5g009970 | 96.715 | 487 | 16 | 0 | 1 | 487 | 16 | 502 | 0.0 | 978 |
MS.gene21633.t1 | MTR_5g009970 | 96.429 | 420 | 15 | 0 | 68 | 487 | 9 | 428 | 0.0 | 844 |
MS.gene21633.t1 | MTR_5g010000 | 86.307 | 482 | 66 | 0 | 6 | 487 | 20 | 501 | 0.0 | 831 |
MS.gene21633.t1 | MTR_5g009970 | 96.259 | 401 | 15 | 0 | 87 | 487 | 1 | 401 | 0.0 | 805 |
MS.gene21633.t1 | MTR_5g009970 | 96.396 | 333 | 12 | 0 | 155 | 487 | 1 | 333 | 0.0 | 667 |
MS.gene21633.t1 | MTR_3g080810 | 54.060 | 468 | 193 | 9 | 23 | 476 | 32 | 491 | 4.03e-179 | 511 |
MS.gene21633.t1 | MTR_3g117500 | 48.632 | 475 | 230 | 6 | 17 | 480 | 15 | 486 | 7.10e-162 | 467 |
MS.gene21633.t1 | MTR_3g105230 | 48.539 | 445 | 224 | 4 | 25 | 468 | 29 | 469 | 5.35e-161 | 465 |
MS.gene21633.t1 | MTR_8g104820 | 48.077 | 468 | 225 | 9 | 22 | 476 | 26 | 488 | 1.36e-160 | 464 |
MS.gene21633.t1 | MTR_3g023740 | 48.899 | 454 | 229 | 3 | 25 | 478 | 29 | 479 | 5.29e-159 | 460 |
MS.gene21633.t1 | MTR_5g085730 | 46.973 | 479 | 235 | 6 | 17 | 479 | 22 | 497 | 2.83e-158 | 459 |
MS.gene21633.t1 | MTR_3g010330 | 49.345 | 458 | 221 | 6 | 26 | 476 | 25 | 478 | 5.50e-158 | 457 |
MS.gene21633.t1 | MTR_8g099410 | 49.153 | 472 | 221 | 6 | 22 | 478 | 24 | 491 | 7.03e-156 | 453 |
MS.gene21633.t1 | MTR_4g035955 | 48.283 | 466 | 231 | 5 | 16 | 476 | 4 | 464 | 7.94e-156 | 451 |
MS.gene21633.t1 | MTR_5g093590 | 48.941 | 472 | 223 | 7 | 23 | 478 | 31 | 500 | 3.81e-155 | 451 |
MS.gene21633.t1 | MTR_1g088190 | 49.679 | 467 | 200 | 9 | 23 | 478 | 36 | 478 | 6.71e-155 | 449 |
MS.gene21633.t1 | MTR_8g099410 | 49.467 | 469 | 218 | 6 | 25 | 478 | 27 | 491 | 1.11e-154 | 454 |
MS.gene21633.t1 | MTR_3g080190 | 47.059 | 476 | 233 | 6 | 20 | 479 | 34 | 506 | 2.52e-153 | 447 |
MS.gene21633.t1 | MTR_4g035930 | 47.505 | 461 | 232 | 5 | 21 | 476 | 10 | 465 | 1.04e-149 | 436 |
MS.gene21633.t1 | MTR_4g074960 | 47.660 | 470 | 226 | 7 | 25 | 478 | 27 | 492 | 3.10e-147 | 435 |
MS.gene21633.t1 | MTR_4g035975 | 46.414 | 474 | 232 | 9 | 19 | 476 | 20 | 487 | 1.52e-145 | 426 |
MS.gene21633.t1 | MTR_1g037340 | 46.868 | 463 | 230 | 7 | 26 | 478 | 25 | 481 | 2.85e-138 | 407 |
MS.gene21633.t1 | MTR_3g113720 | 42.521 | 468 | 248 | 6 | 27 | 479 | 58 | 519 | 1.04e-128 | 384 |
MS.gene21633.t1 | MTR_8g075990 | 42.644 | 469 | 248 | 7 | 27 | 480 | 64 | 526 | 1.04e-120 | 364 |
MS.gene21633.t1 | MTR_3g090540 | 39.315 | 496 | 253 | 16 | 19 | 478 | 100 | 583 | 5.21e-104 | 323 |
MS.gene21633.t1 | MTR_2g028480 | 40.000 | 490 | 246 | 13 | 26 | 478 | 111 | 589 | 1.99e-101 | 317 |
MS.gene21633.t1 | MTR_3g082440 | 37.449 | 494 | 264 | 15 | 26 | 485 | 116 | 598 | 1.73e-92 | 294 |
MS.gene21633.t1 | MTR_1g088190 | 47.386 | 306 | 132 | 5 | 23 | 319 | 36 | 321 | 9.86e-85 | 265 |
MS.gene21633.t1 | MTR_7g108925 | 50.633 | 158 | 76 | 2 | 321 | 478 | 43 | 198 | 6.14e-55 | 183 |
MS.gene21633.t1 | MTR_0393s0050 | 50.345 | 145 | 71 | 1 | 321 | 465 | 20 | 163 | 1.25e-42 | 150 |
MS.gene21633.t1 | MTR_1g037320 | 45.625 | 160 | 84 | 1 | 87 | 243 | 1 | 160 | 6.26e-38 | 140 |
MS.gene21633.t1 | MTR_1g037320 | 50.820 | 122 | 59 | 1 | 355 | 476 | 169 | 289 | 1.64e-32 | 125 |
MS.gene21633.t1 | MTR_4g128810 | 43.038 | 158 | 83 | 3 | 330 | 487 | 189 | 339 | 5.84e-31 | 123 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene21633.t1 | AT4G23560 | 68.710 | 473 | 147 | 1 | 8 | 480 | 5 | 476 | 0.0 | 662 |
MS.gene21633.t1 | AT4G09740 | 67.653 | 473 | 152 | 1 | 8 | 480 | 5 | 476 | 0.0 | 654 |
MS.gene21633.t1 | AT1G02800 | 53.879 | 464 | 199 | 7 | 24 | 478 | 41 | 498 | 5.01e-176 | 504 |
MS.gene21633.t1 | AT4G02290 | 51.188 | 463 | 213 | 6 | 23 | 476 | 49 | 507 | 2.50e-169 | 488 |
MS.gene21633.t1 | AT1G23210 | 48.932 | 468 | 224 | 7 | 16 | 473 | 18 | 480 | 5.03e-164 | 473 |
MS.gene21633.t1 | AT1G70710 | 48.807 | 461 | 223 | 6 | 22 | 473 | 24 | 480 | 9.34e-163 | 470 |
MS.gene21633.t1 | AT4G39010 | 49.364 | 472 | 224 | 7 | 21 | 480 | 24 | 492 | 4.08e-162 | 468 |
MS.gene21633.t1 | AT3G43860 | 49.011 | 455 | 229 | 3 | 26 | 480 | 34 | 485 | 1.23e-154 | 449 |
MS.gene21633.t1 | AT3G43860 | 49.011 | 455 | 229 | 3 | 26 | 480 | 34 | 485 | 1.23e-154 | 449 |
MS.gene21633.t1 | AT2G32990 | 45.877 | 473 | 241 | 5 | 18 | 476 | 31 | 502 | 3.39e-152 | 444 |
MS.gene21633.t1 | AT4G11050 | 46.934 | 473 | 232 | 6 | 23 | 480 | 23 | 491 | 3.94e-151 | 442 |
MS.gene21633.t1 | AT1G71380 | 46.458 | 480 | 245 | 7 | 8 | 480 | 6 | 480 | 1.94e-150 | 438 |
MS.gene21633.t1 | AT4G11050 | 46.934 | 473 | 232 | 6 | 23 | 480 | 23 | 491 | 2.29e-150 | 443 |
MS.gene21633.t1 | AT4G11050 | 46.934 | 473 | 232 | 6 | 23 | 480 | 23 | 491 | 2.66e-150 | 443 |
MS.gene21633.t1 | AT4G38990 | 47.182 | 479 | 231 | 8 | 16 | 476 | 13 | 487 | 1.03e-149 | 437 |
MS.gene21633.t1 | AT1G64390 | 46.921 | 471 | 231 | 6 | 23 | 478 | 22 | 488 | 3.29e-149 | 440 |
MS.gene21633.t1 | AT1G22880 | 48.387 | 465 | 228 | 7 | 23 | 480 | 21 | 480 | 8.24e-149 | 434 |
MS.gene21633.t1 | AT4G39000 | 45.963 | 483 | 242 | 9 | 8 | 476 | 7 | 484 | 9.63e-149 | 434 |
MS.gene21633.t1 | AT1G48930 | 50.108 | 465 | 217 | 5 | 25 | 476 | 29 | 491 | 5.19e-145 | 429 |
MS.gene21633.t1 | AT2G44540 | 47.845 | 464 | 231 | 5 | 24 | 479 | 31 | 491 | 3.26e-144 | 422 |
MS.gene21633.t1 | AT2G44570 | 47.639 | 466 | 232 | 7 | 22 | 478 | 29 | 491 | 1.16e-143 | 421 |
MS.gene21633.t1 | AT2G44550 | 47.289 | 461 | 231 | 6 | 24 | 476 | 31 | 487 | 3.92e-142 | 417 |
MS.gene21633.t1 | AT2G44560 | 47.084 | 463 | 234 | 5 | 24 | 478 | 31 | 490 | 1.54e-138 | 408 |
MS.gene21633.t1 | AT4G02290 | 48.500 | 400 | 191 | 7 | 87 | 476 | 1 | 395 | 7.62e-133 | 390 |
MS.gene21633.t1 | AT1G19940 | 44.662 | 459 | 237 | 6 | 26 | 473 | 48 | 500 | 1.51e-132 | 394 |
MS.gene21633.t1 | AT1G19940 | 44.662 | 459 | 237 | 6 | 26 | 473 | 48 | 500 | 1.51e-132 | 394 |
MS.gene21633.t1 | AT1G75680 | 45.395 | 456 | 228 | 8 | 27 | 469 | 58 | 505 | 2.14e-129 | 386 |
MS.gene21633.t1 | AT1G22880 | 46.135 | 401 | 204 | 7 | 87 | 480 | 1 | 396 | 2.67e-120 | 358 |
MS.gene21633.t1 | AT4G39010 | 46.175 | 366 | 183 | 6 | 21 | 374 | 24 | 387 | 2.00e-114 | 343 |
MS.gene21633.t1 | AT2G44570 | 44.180 | 378 | 199 | 7 | 22 | 390 | 29 | 403 | 7.20e-99 | 303 |
MS.gene21633.t1 | AT5G49720 | 39.228 | 492 | 253 | 13 | 26 | 481 | 108 | 589 | 2.68e-98 | 309 |
MS.gene21633.t1 | AT1G19940 | 42.936 | 361 | 194 | 4 | 26 | 375 | 48 | 407 | 2.05e-94 | 292 |
MS.gene21633.t1 | AT4G24260 | 39.034 | 497 | 255 | 14 | 26 | 485 | 108 | 593 | 1.08e-93 | 297 |
MS.gene21633.t1 | AT1G65610 | 37.652 | 494 | 259 | 17 | 26 | 485 | 116 | 594 | 1.26e-93 | 296 |
MS.gene21633.t1 | AT1G22880 | 48.039 | 306 | 149 | 5 | 23 | 321 | 21 | 323 | 2.83e-88 | 274 |
MS.gene21633.t1 | AT4G38990 | 44.034 | 352 | 169 | 6 | 16 | 360 | 13 | 343 | 7.07e-88 | 273 |
MS.gene21633.t1 | AT4G24260 | 36.693 | 387 | 202 | 12 | 26 | 375 | 108 | 488 | 1.27e-57 | 198 |
MS.gene21633.t1 | AT4G24260 | 38.486 | 317 | 156 | 10 | 26 | 307 | 108 | 420 | 2.75e-51 | 181 |
MS.gene21633.t1 | AT3G42153 | 54.348 | 92 | 38 | 1 | 232 | 319 | 16 | 107 | 8.62e-28 | 107 |
Find 109 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCCCCTCCACTTCACTCTT+TGG | 0.212758 | 5.2:+3385798 | None:intergenic |
AATTAATTCCTCATCCATTA+TGG | 0.269396 | 5.2:+3385916 | None:intergenic |
TCAATCTTGTAAAGTGTTCT+TGG | 0.279231 | 5.2:+3384444 | None:intergenic |
TCAGCTGCAGCCTCAGTTCC+AGG | 0.287596 | 5.2:+3384411 | None:intergenic |
CAGATCTTGCATCATTAAAT+TGG | 0.290399 | 5.2:+3383064 | None:intergenic |
GATTTCAGAGGATGTGAAAT+TGG | 0.308600 | 5.2:+3383433 | None:intergenic |
ATATCTTTGGCAGGTGAATC+TGG | 0.324005 | 5.2:-3385045 | MS.gene21633:intron |
ATCTGTAGAGAGTAACTTCC+TGG | 0.325679 | 5.2:+3383697 | None:intergenic |
CACTTCACTCTTTGGTCTTT+AGG | 0.330155 | 5.2:+3385806 | None:intergenic |
TATATGAATGCTGCGTTCAT+AGG | 0.331549 | 5.2:-3383015 | MS.gene21633:CDS |
ATGTCATACATGGTGGGATA+TGG | 0.339226 | 5.2:-3383255 | MS.gene21633:CDS |
ATAGCACCCACATGAATATT+AGG | 0.348295 | 5.2:+3383111 | None:intergenic |
TCTCCGCCGTGCTATTCGTT+GGG | 0.366022 | 5.2:-3384895 | MS.gene21633:CDS |
TAATGGTCTATTAGCCATAA+TGG | 0.374842 | 5.2:-3385930 | MS.gene21633:CDS |
TACAGTCAGCTTATTGAGTT+GGG | 0.376730 | 5.2:-3384967 | MS.gene21633:CDS |
TCATTGCAATCCACTTTAGC+TGG | 0.382872 | 5.2:+3383171 | None:intergenic |
CCCACATGAATATTAGGATT+AGG | 0.392902 | 5.2:+3383117 | None:intergenic |
ATCTCCGCCGTGCTATTCGT+TGG | 0.402115 | 5.2:-3384896 | MS.gene21633:CDS |
AATATTAGGATTAGGATTAG+AGG | 0.403218 | 5.2:+3383125 | None:intergenic |
TTAAATTGGTCATTAAAATC+AGG | 0.410829 | 5.2:+3383078 | None:intergenic |
AGCTGGGACAACAAATTTGT+TGG | 0.410959 | 5.2:-3383932 | MS.gene21633:CDS |
CAAAGTTCACCCAGCTAAAG+TGG | 0.412258 | 5.2:-3383181 | MS.gene21633:CDS |
CCTCTGTGATGTAATTGCTT+TGG | 0.412449 | 5.2:+3383222 | None:intergenic |
ACCGAAAGGATGAACTGTTA+TGG | 0.414159 | 5.2:-3384048 | MS.gene21633:intron |
CAAGTACTTGCTTTCTCCAC+TGG | 0.416765 | 5.2:+3384003 | None:intergenic |
CACCATGTATGACATCTTCA+TGG | 0.417078 | 5.2:+3383263 | None:intergenic |
CCATTCTACTGCTCGTACTC+TGG | 0.417471 | 5.2:-3384169 | MS.gene21633:CDS |
GCTGGGTGAACTTTGATTGA+AGG | 0.420828 | 5.2:+3383189 | None:intergenic |
CTTGGAGTATCCATGTCTTC+CGG | 0.422002 | 5.2:+3384462 | None:intergenic |
GCTGGTGATAATGTCAAGTT+TGG | 0.423084 | 5.2:-3385005 | MS.gene21633:CDS |
AACTGTTATGGGCTGCTGCT+TGG | 0.428578 | 5.2:-3384036 | MS.gene21633:CDS |
TTGATTGCCGAAATTAAAAC+CGG | 0.431224 | 5.2:-3382979 | MS.gene21633:CDS |
AGGCAGCGTCTGAGTTCAGC+TGG | 0.451630 | 5.2:-3383949 | MS.gene21633:CDS |
AGATAACCAAGGTTGGAATC+AGG | 0.451903 | 5.2:-3383969 | MS.gene21633:CDS |
GCTAAAGTGGATTGCAATGA+TGG | 0.456802 | 5.2:-3383168 | MS.gene21633:CDS |
ACCATTATTCTTACTACTCA+TGG | 0.457606 | 5.2:+3385946 | None:intergenic |
TTCACCATCACTATGAATCT+TGG | 0.458528 | 5.2:+3383741 | None:intergenic |
TGGAACTGAGGCTGCAGCTG+AGG | 0.459683 | 5.2:-3384409 | MS.gene21633:CDS |
TAGTACCATGGTTGAGGTTG+TGG | 0.461334 | 5.2:+3383514 | None:intergenic |
TCATCAATGTTGGGAGCGTC+CGG | 0.461447 | 5.2:-3384481 | MS.gene21633:CDS |
CCGAAAGGATGAACTGTTAT+GGG | 0.463366 | 5.2:-3384047 | MS.gene21633:intron |
ATTCATGTGGGTGCTATTGT+TGG | 0.466637 | 5.2:-3383105 | MS.gene21633:CDS |
TTACAGTCAGCTTATTGAGT+TGG | 0.467244 | 5.2:-3384968 | MS.gene21633:CDS |
GCCATGAGTAGTAAGAATAA+TGG | 0.485231 | 5.2:-3385947 | MS.gene21633:CDS |
TACAACTATGCAGATGCTCT+TGG | 0.494973 | 5.2:-3385872 | MS.gene21633:CDS |
GTGAACTTTGATTGAAGGAA+TGG | 0.507187 | 5.2:+3383194 | None:intergenic |
AAGATTGATGCTAATTCCCC+TGG | 0.508528 | 5.2:-3384429 | MS.gene21633:CDS |
AAACGCAGATCATCAATGTT+GGG | 0.510319 | 5.2:-3384490 | MS.gene21633:CDS |
CCAGAGTACGAGCAGTAGAA+TGG | 0.510375 | 5.2:+3384169 | None:intergenic |
ACATAGGTGGACTACATACT+AGG | 0.511456 | 5.2:-3383294 | MS.gene21633:intron |
GAAACGCAGATCATCAATGT+TGG | 0.511702 | 5.2:-3384491 | MS.gene21633:CDS |
CACGGCGGAGATAATCAATC+TGG | 0.513292 | 5.2:+3384907 | None:intergenic |
TTTATATGTGCATTGATGCC+AGG | 0.514115 | 5.2:-3383715 | MS.gene21633:CDS |
ACGCTGCCTGATTCCAACCT+TGG | 0.518138 | 5.2:+3383963 | None:intergenic |
CAGCTGCAGCCTCAGTTCCA+GGG | 0.523289 | 5.2:+3384412 | None:intergenic |
GGAATTCTATGGTGGGAAGA+AGG | 0.526288 | 5.2:-3383770 | MS.gene21633:CDS |
CTACAGATTAAAACAACTCC+TGG | 0.527682 | 5.2:-3383682 | MS.gene21633:intron |
CTTTGGCAGGTGAATCTGGT+TGG | 0.527930 | 5.2:-3385041 | MS.gene21633:intron |
CATGTGGGTGCTATTGTTGG+AGG | 0.529821 | 5.2:-3383102 | MS.gene21633:CDS |
TCCTAATCCTAATATTCATG+TGG | 0.530984 | 5.2:-3383118 | MS.gene21633:CDS |
TGGCAGGTGAATCTGGTTGG+AGG | 0.535694 | 5.2:-3385038 | MS.gene21633:intron |
GAACGCAGCATTCATATAAG+TGG | 0.537189 | 5.2:+3383020 | None:intergenic |
GCCTGTGTGAAGAGCGTGGT+TGG | 0.537258 | 5.2:+3384840 | None:intergenic |
AATGAATAGTACCATGGTTG+AGG | 0.541527 | 5.2:+3383508 | None:intergenic |
TGCTAATTCCCCTGGAACTG+AGG | 0.542113 | 5.2:-3384421 | MS.gene21633:CDS |
TGCAAAGGCTCTGATTTCAG+AGG | 0.549636 | 5.2:+3383421 | None:intergenic |
CAGAGCCTTTGCAAAATCAC+AGG | 0.555689 | 5.2:-3383411 | MS.gene21633:intron |
GGAGACTCAGCTCTCTCTGA+TGG | 0.562146 | 5.2:-3385779 | MS.gene21633:CDS |
GTTGGAGGATACTATGATGC+TGG | 0.563188 | 5.2:-3385023 | MS.gene21633:CDS |
ACATCACAGATAACCAAGGT+TGG | 0.565178 | 5.2:-3383976 | MS.gene21633:CDS |
TTGGGAGCGTCCGGAAGACA+TGG | 0.572244 | 5.2:-3384472 | MS.gene21633:CDS |
CATTGCAATCCACTTTAGCT+GGG | 0.572753 | 5.2:+3383172 | None:intergenic |
TGCATAGTTGTAACTAGATG+AGG | 0.579774 | 5.2:+3385883 | None:intergenic |
TGTGATTGCTAGGTTGGAGA+AGG | 0.581440 | 5.2:-3384513 | MS.gene21633:intron |
GGCTGCTGCTTGGTTATACA+AGG | 0.582101 | 5.2:-3384026 | MS.gene21633:CDS |
TCTATTAGCCATAATGGATG+AGG | 0.585271 | 5.2:-3385924 | MS.gene21633:CDS |
AGCTGCAGCCTCAGTTCCAG+GGG | 0.585982 | 5.2:+3384413 | None:intergenic |
GACCAAAGAGTGAAGTGGAG+GGG | 0.590017 | 5.2:-3385800 | MS.gene21633:CDS |
AAGCTGACTGTAAATGACAT+TGG | 0.590276 | 5.2:+3384978 | None:intergenic |
GTGATAATGTCAAGTTTGGA+TGG | 0.592513 | 5.2:-3385001 | MS.gene21633:CDS |
GGAGAAAATGAATAGTACCA+TGG | 0.593160 | 5.2:+3383502 | None:intergenic |
AAGTATAGAGGCACCTACAC+GGG | 0.600830 | 5.2:-3384199 | MS.gene21633:CDS |
AGACCAAAGAGTGAAGTGGA+GGG | 0.601742 | 5.2:-3385801 | MS.gene21633:CDS |
ACCATGTATGACATCTTCAT+GGG | 0.604739 | 5.2:+3383264 | None:intergenic |
TGAAATTGGTAGAGCCACAA+TGG | 0.606299 | 5.2:+3383447 | None:intergenic |
TCCCATGAAGATGTCATACA+TGG | 0.607679 | 5.2:-3383265 | MS.gene21633:CDS |
CATATTGATGGAATCCATTG+TGG | 0.608291 | 5.2:-3383461 | MS.gene21633:CDS |
CCTAATCCTAATATTCATGT+GGG | 0.608435 | 5.2:-3383117 | MS.gene21633:CDS |
CTCCGCCGTGCTATTCGTTG+GGG | 0.608919 | 5.2:-3384894 | MS.gene21633:CDS |
CAAGTATAGAGGCACCTACA+CGG | 0.612002 | 5.2:-3384200 | MS.gene21633:CDS |
GCAGCATTCATATAAGTGGT+AGG | 0.613722 | 5.2:+3383024 | None:intergenic |
TTTACTAGGAATTCTATGGT+GGG | 0.615507 | 5.2:-3383777 | MS.gene21633:intron |
TTAGCCAAGATTCATAGTGA+TGG | 0.625051 | 5.2:-3383745 | MS.gene21633:CDS |
AGTTCAAACATTACTAACAC+AGG | 0.627457 | 5.2:-3383909 | MS.gene21633:intron |
ATGAAGATGTCATACATGGT+GGG | 0.629064 | 5.2:-3383261 | MS.gene21633:CDS |
TGATTGCCGAAATTAAAACC+GGG | 0.629615 | 5.2:-3382978 | MS.gene21633:CDS |
TCCAACCACGCTCTTCACAC+AGG | 0.632498 | 5.2:-3384841 | MS.gene21633:intron |
AAGACCAAAGAGTGAAGTGG+AGG | 0.641884 | 5.2:-3385802 | MS.gene21633:CDS |
GGCAGCGTCTGAGTTCAGCT+GGG | 0.647866 | 5.2:-3383948 | MS.gene21633:CDS |
GAATGGACAAGAACCCGTGT+AGG | 0.649143 | 5.2:+3384186 | None:intergenic |
CATGAAGATGTCATACATGG+TGG | 0.650028 | 5.2:-3383262 | MS.gene21633:CDS |
CTAAAGACCAAAGAGTGAAG+TGG | 0.653325 | 5.2:-3385805 | MS.gene21633:CDS |
ATACACCACAACCTCAACCA+TGG | 0.664872 | 5.2:-3383519 | MS.gene21633:CDS |
GCTTGGTTATACAAGGCCAG+TGG | 0.674115 | 5.2:-3384019 | MS.gene21633:CDS |
TTGTACCCCAACGAATAGCA+CGG | 0.684450 | 5.2:+3384889 | None:intergenic |
AAGTACATCACAGATAACCA+AGG | 0.712270 | 5.2:-3383980 | MS.gene21633:CDS |
ACATGCCTGTGTGAAGAGCG+TGG | 0.726142 | 5.2:+3384836 | None:intergenic |
CCAAAGCAATTACATCACAG+AGG | 0.748019 | 5.2:-3383222 | MS.gene21633:CDS |
TACCCCAACGAATAGCACGG+CGG | 0.808256 | 5.2:+3384892 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AGTAAAAAAAATATTATGAT+CGG | - | chr5.2:3383798-3383817 | MS.gene21633:intron | 10.0% |
!!! | AAATGTTTTTAATAATTTGA+TGG | - | chr5.2:3383569-3383588 | MS.gene21633:intron | 10.0% |
!!! | TACTTTTTTTTTTTTTTACT+AGG | - | chr5.2:3385122-3385141 | MS.gene21633:intron | 10.0% |
!!! | TTTAATTTATATACAATGTT+TGG | + | chr5.2:3383659-3383678 | None:intergenic | 10.0% |
!! | CTAAATAAAAATCATATTGA+TGG | - | chr5.2:3385440-3385459 | MS.gene21633:intron | 15.0% |
!!! | ATGATTTTTATTTAGGATTT+TGG | + | chr5.2:3385435-3385454 | None:intergenic | 15.0% |
!!! | CATCAATATGATTTTTATTT+AGG | + | chr5.2:3385442-3385461 | None:intergenic | 15.0% |
!! | ACTTTAATTAGTCATAATCA+TGG | + | chr5.2:3383781-3383800 | None:intergenic | 20.0% |
!! | ATGAAGCAAAATAAAGAAAT+GGG | + | chr5.2:3385566-3385585 | None:intergenic | 20.0% |
!! | ATTAAGTTATTTATCCGTAA+AGG | + | chr5.2:3384112-3384131 | None:intergenic | 20.0% |
!! | ATTATAGTGAGATTAGAATA+TGG | - | chr5.2:3383259-3383278 | MS.gene21633:CDS | 20.0% |
!! | TATATCAGATTGTTACTATA+TGG | + | chr5.2:3385057-3385076 | None:intergenic | 20.0% |
!! | TATGAAGCAAAATAAAGAAA+TGG | + | chr5.2:3385567-3385586 | None:intergenic | 20.0% |
!! | TCATGTGTATTATATATCTT+TGG | - | chr5.2:3383855-3383874 | MS.gene21633:intron | 20.0% |
!! | TTAAATTGGTCATTAAAATC+AGG | + | chr5.2:3385838-3385857 | None:intergenic | 20.0% |
!! | TTAAGTTATTTATCCGTAAA+GGG | + | chr5.2:3384111-3384130 | None:intergenic | 20.0% |
!! | TTATAGTGAGATTAGAATAT+GGG | - | chr5.2:3383260-3383279 | MS.gene21633:CDS | 20.0% |
!! | TTCTTAGTATCATTCATTTA+TGG | - | chr5.2:3384822-3384841 | MS.gene21633:intron | 20.0% |
!!! | TTTTTTTACTAGGAATTCTA+TGG | - | chr5.2:3385132-3385151 | MS.gene21633:intron | 20.0% |
! | AATATTAGGATTAGGATTAG+AGG | + | chr5.2:3385791-3385810 | None:intergenic | 25.0% |
! | AATTAATTCCTCATCCATTA+TGG | + | chr5.2:3383000-3383019 | None:intergenic | 25.0% |
! | AGTACTTTGTCATGATATAT+AGG | + | chr5.2:3384296-3384315 | None:intergenic | 25.0% |
! | AGTCATAGGTAAAGTAATTA+AGG | + | chr5.2:3383833-3383852 | None:intergenic | 25.0% |
! | ATCAAGAAATCTATCAAAAG+GGG | - | chr5.2:3383397-3383416 | MS.gene21633:intron | 25.0% |
! | ATTATATTTGTAGTGTTACC+AGG | + | chr5.2:3385252-3385271 | None:intergenic | 25.0% |
! | GATCAAGAAATCTATCAAAA+GGG | - | chr5.2:3383396-3383415 | MS.gene21633:intron | 25.0% |
! | GTACTTTGTCATGATATATA+GGG | + | chr5.2:3384295-3384314 | None:intergenic | 25.0% |
! | TGATCAAGAAATCTATCAAA+AGG | - | chr5.2:3383395-3383414 | MS.gene21633:intron | 25.0% |
! | TTAATGAGTTAATTCTCTCT+TGG | + | chr5.2:3385099-3385118 | None:intergenic | 25.0% |
!! | AGTTAAGTTTTTAATGCATG+AGG | - | chr5.2:3383291-3383310 | MS.gene21633:CDS | 25.0% |
!! | GTTAAGTTTTTAATGCATGA+GGG | - | chr5.2:3383292-3383311 | MS.gene21633:intron | 25.0% |
!! | TTAAGTTTTTAATGCATGAG+GGG | - | chr5.2:3383293-3383312 | MS.gene21633:intron | 25.0% |
!! | TTTTTGAATTTTGTACCGAA+AGG | - | chr5.2:3384851-3384870 | MS.gene21633:CDS | 25.0% |
!!! | ATTTGCTATATTGTTAACTC+AGG | - | chr5.2:3385335-3385354 | MS.gene21633:intron | 25.0% |
AAGTAAGAAATTACAGCTTG+TGG | - | chr5.2:3384772-3384791 | MS.gene21633:intron | 30.0% | |
AATATTTAACCTGCAACACA+AGG | + | chr5.2:3384356-3384375 | None:intergenic | 30.0% | |
ACAAGCTGTAATTTCTTACT+TGG | + | chr5.2:3384773-3384792 | None:intergenic | 30.0% | |
AGTTCAAACATTACTAACAC+AGG | - | chr5.2:3385004-3385023 | MS.gene21633:CDS | 30.0% | |
ATTGAATGCGTACATAACAT+AGG | - | chr5.2:3385603-3385622 | MS.gene21633:intron | 30.0% | |
CAGATCTTGCATCATTAAAT+TGG | + | chr5.2:3385852-3385871 | None:intergenic | 30.0% | |
CATGATATATAGGGTAAGTT+TGG | + | chr5.2:3384286-3384305 | None:intergenic | 30.0% | |
CCTAATCCTAATATTCATGT+GGG | - | chr5.2:3385796-3385815 | MS.gene21633:CDS | 30.0% | |
GTGTATTATATATCTTTGGC+AGG | - | chr5.2:3383859-3383878 | MS.gene21633:intron | 30.0% | |
TAAGAATTGTTGTGATTGCT+AGG | - | chr5.2:3384390-3384409 | MS.gene21633:CDS | 30.0% | |
TAATACACATGATCAGTCAT+AGG | + | chr5.2:3383847-3383866 | None:intergenic | 30.0% | |
TAATGGTCTATTAGCCATAA+TGG | - | chr5.2:3382983-3383002 | MS.gene21633:CDS | 30.0% | |
TCAAGAAATCTATCAAAAGG+GGG | - | chr5.2:3383398-3383417 | MS.gene21633:intron | 30.0% | |
TCCTAATCCTAATATTCATG+TGG | - | chr5.2:3385795-3385814 | MS.gene21633:CDS | 30.0% | |
TCTATAGTTACACATATGAG+TGG | + | chr5.2:3383532-3383551 | None:intergenic | 30.0% | |
TGTGTTGCAGGTTAAATATT+TGG | - | chr5.2:3384356-3384375 | MS.gene21633:CDS | 30.0% | |
TTGAATGTTATTGCATGAGA+GGG | - | chr5.2:3383719-3383738 | MS.gene21633:CDS | 30.0% | |
TTGATTGCCGAAATTAAAAC+CGG | - | chr5.2:3385934-3385953 | MS.gene21633:CDS | 30.0% | |
TTGTCCTTCAAAAAACAAGA+TGG | + | chr5.2:3383072-3383091 | None:intergenic | 30.0% | |
TTTACTAGGAATTCTATGGT+GGG | - | chr5.2:3385136-3385155 | MS.gene21633:intron | 30.0% | |
! | AAATACCTGTGATTTTGCAA+AGG | + | chr5.2:3385510-3385529 | None:intergenic | 30.0% |
! | GAGAGACTGTTAATAACTTT+TGG | + | chr5.2:3384226-3384245 | None:intergenic | 30.0% |
! | TCAATCTTGTAAAGTGTTCT+TGG | + | chr5.2:3384472-3384491 | None:intergenic | 30.0% |
! | TTTTACTAGGAATTCTATGG+TGG | - | chr5.2:3385135-3385154 | MS.gene21633:intron | 30.0% |
!! | ACATGTTCATAAGCTGTTTT+CGG | + | chr5.2:3384189-3384208 | None:intergenic | 30.0% |
!!! | AAAGCCATCTTGTTTTTTGA+AGG | - | chr5.2:3383065-3383084 | MS.gene21633:CDS | 30.0% |
AAACGCAGATCATCAATGTT+GGG | - | chr5.2:3384423-3384442 | MS.gene21633:CDS | 35.0% | |
AAGCTGACTGTAAATGACAT+TGG | + | chr5.2:3383938-3383957 | None:intergenic | 35.0% | |
AAGTACATCACAGATAACCA+AGG | - | chr5.2:3384933-3384952 | MS.gene21633:CDS | 35.0% | |
AATGAATAGTACCATGGTTG+AGG | + | chr5.2:3385408-3385427 | None:intergenic | 35.0% | |
AATTGTTGTGATTGCTAGGT+TGG | - | chr5.2:3384394-3384413 | MS.gene21633:CDS | 35.0% | |
ACCATGTATGACATCTTCAT+GGG | + | chr5.2:3385652-3385671 | None:intergenic | 35.0% | |
ATAGCACCCACATGAATATT+AGG | + | chr5.2:3385805-3385824 | None:intergenic | 35.0% | |
ATGAAGATGTCATACATGGT+GGG | - | chr5.2:3385652-3385671 | MS.gene21633:intron | 35.0% | |
CATATTGATGGAATCCATTG+TGG | - | chr5.2:3385452-3385471 | MS.gene21633:intron | 35.0% | |
CCCACATGAATATTAGGATT+AGG | + | chr5.2:3385799-3385818 | None:intergenic | 35.0% | |
CTACAGATTAAAACAACTCC+TGG | - | chr5.2:3385231-3385250 | MS.gene21633:intron | 35.0% | |
CTTGAATGTTATTGCATGAG+AGG | - | chr5.2:3383718-3383737 | MS.gene21633:CDS | 35.0% | |
GATTTCAGAGGATGTGAAAT+TGG | + | chr5.2:3385483-3385502 | None:intergenic | 35.0% | |
GGAGAAAATGAATAGTACCA+TGG | + | chr5.2:3385414-3385433 | None:intergenic | 35.0% | |
GTGAACTTTGATTGAAGGAA+TGG | + | chr5.2:3385722-3385741 | None:intergenic | 35.0% | |
TACAGTCAGCTTATTGAGTT+GGG | - | chr5.2:3383946-3383965 | MS.gene21633:CDS | 35.0% | |
TATATGAATGCTGCGTTCAT+AGG | - | chr5.2:3385898-3385917 | MS.gene21633:CDS | 35.0% | |
TGATTGCCGAAATTAAAACC+GGG | - | chr5.2:3385935-3385954 | MS.gene21633:CDS | 35.0% | |
TGCATAGTTGTAACTAGATG+AGG | + | chr5.2:3383033-3383052 | None:intergenic | 35.0% | |
TGCTATATTGTTAACTCAGG+TGG | - | chr5.2:3385338-3385357 | MS.gene21633:intron | 35.0% | |
TTACAGTCAGCTTATTGAGT+TGG | - | chr5.2:3383945-3383964 | MS.gene21633:CDS | 35.0% | |
TTAGCCAAGATTCATAGTGA+TGG | - | chr5.2:3385168-3385187 | MS.gene21633:intron | 35.0% | |
TTCACCATCACTATGAATCT+TGG | + | chr5.2:3385175-3385194 | None:intergenic | 35.0% | |
! | GATTTTGCTGACAAGTATAG+AGG | - | chr5.2:3384702-3384721 | MS.gene21633:intron | 35.0% |
! | GTGATAATGTCAAGTTTGGA+TGG | - | chr5.2:3383912-3383931 | MS.gene21633:CDS | 35.0% |
! | GTTACACATATGAGTGGTTT+TGG | + | chr5.2:3383526-3383545 | None:intergenic | 35.0% |
! | TTTATATGTGCATTGATGCC+AGG | - | chr5.2:3385198-3385217 | MS.gene21633:intron | 35.0% |
!! | GCTATTTTCACAAGCTATCT+TGG | - | chr5.2:3384145-3384164 | MS.gene21633:intron | 35.0% |
!! | TCTATTAGCCATAATGGATG+AGG | - | chr5.2:3382989-3383008 | MS.gene21633:CDS | 35.0% |
!!! | CATAGTCCCGGTTTTAATTT+CGG | + | chr5.2:3385944-3385963 | None:intergenic | 35.0% |
AAGATTGATGCTAATTCCCC+TGG | - | chr5.2:3384484-3384503 | MS.gene21633:CDS | 40.0% | |
AATCATGGCAGATTGAGAGA+GGG | + | chr5.2:3383766-3383785 | None:intergenic | 40.0% | |
AATGTTATTGCATGAGAGGG+AGG | - | chr5.2:3383722-3383741 | MS.gene21633:CDS | 40.0% | |
ACATCACAGATAACCAAGGT+TGG | - | chr5.2:3384937-3384956 | MS.gene21633:CDS | 40.0% | |
ACCGAAAGGATGAACTGTTA+TGG | - | chr5.2:3384865-3384884 | MS.gene21633:CDS | 40.0% | |
AGATAACCAAGGTTGGAATC+AGG | - | chr5.2:3384944-3384963 | MS.gene21633:CDS | 40.0% | |
AGCTGGGACAACAAATTTGT+TGG | - | chr5.2:3384981-3385000 | MS.gene21633:CDS | 40.0% | |
ATATCTTTGGCAGGTGAATC+TGG | - | chr5.2:3383868-3383887 | MS.gene21633:intron | 40.0% | |
ATCTGTAGAGAGTAACTTCC+TGG | + | chr5.2:3385219-3385238 | None:intergenic | 40.0% | |
CACCATGTATGACATCTTCA+TGG | + | chr5.2:3385653-3385672 | None:intergenic | 40.0% | |
CATGAAGATGTCATACATGG+TGG | - | chr5.2:3385651-3385670 | MS.gene21633:intron | 40.0% | |
CATTGCAATCCACTTTAGCT+GGG | + | chr5.2:3385744-3385763 | None:intergenic | 40.0% | |
CCAAAGCAATTACATCACAG+AGG | - | chr5.2:3385691-3385710 | MS.gene21633:intron | 40.0% | |
CCCATAACAGTTCATCCTTT+CGG | + | chr5.2:3384869-3384888 | None:intergenic | 40.0% | |
CCGAAAGGATGAACTGTTAT+GGG | - | chr5.2:3384866-3384885 | MS.gene21633:CDS | 40.0% | |
CCTCTGTGATGTAATTGCTT+TGG | + | chr5.2:3385694-3385713 | None:intergenic | 40.0% | |
CTAAAGACCAAAGAGTGAAG+TGG | - | chr5.2:3383108-3383127 | MS.gene21633:CDS | 40.0% | |
GAAACGCAGATCATCAATGT+TGG | - | chr5.2:3384422-3384441 | MS.gene21633:CDS | 40.0% | |
GAACGCAGCATTCATATAAG+TGG | + | chr5.2:3385896-3385915 | None:intergenic | 40.0% | |
GAATGCGTACATAACATAGG+TGG | - | chr5.2:3385606-3385625 | MS.gene21633:intron | 40.0% | |
GCAGCATTCATATAAGTGGT+AGG | + | chr5.2:3385892-3385911 | None:intergenic | 40.0% | |
TAATCATGGCAGATTGAGAG+AGG | + | chr5.2:3383767-3383786 | None:intergenic | 40.0% | |
TACAACTATGCAGATGCTCT+TGG | - | chr5.2:3383041-3383060 | MS.gene21633:CDS | 40.0% | |
TCATTGCAATCCACTTTAGC+TGG | + | chr5.2:3385745-3385764 | None:intergenic | 40.0% | |
TCCCATGAAGATGTCATACA+TGG | - | chr5.2:3385648-3385667 | MS.gene21633:intron | 40.0% | |
TGAAATTGGTAGAGCCACAA+TGG | + | chr5.2:3385469-3385488 | None:intergenic | 40.0% | |
! | ATGTCATACATGGTGGGATA+TGG | - | chr5.2:3385658-3385677 | MS.gene21633:intron | 40.0% |
! | CACTTCACTCTTTGGTCTTT+AGG | + | chr5.2:3383110-3383129 | None:intergenic | 40.0% |
! | CATGTTTCTATGGCCCTTTA+CGG | - | chr5.2:3384095-3384114 | MS.gene21633:intron | 40.0% |
! | GCTGGTGATAATGTCAAGTT+TGG | - | chr5.2:3383908-3383927 | MS.gene21633:intron | 40.0% |
! | TTCACACAGGCATGTTTCTA+TGG | - | chr5.2:3384085-3384104 | MS.gene21633:intron | 40.0% |
!! | ACATAGGTGGACTACATACT+AGG | - | chr5.2:3385619-3385638 | MS.gene21633:intron | 40.0% |
!! | ATTCATGTGGGTGCTATTGT+TGG | - | chr5.2:3385808-3385827 | MS.gene21633:CDS | 40.0% |
!! | GCTAAAGTGGATTGCAATGA+TGG | - | chr5.2:3385745-3385764 | MS.gene21633:intron | 40.0% |
!! | TTTTTGAAGGACAACGCTCA+GGG | - | chr5.2:3383078-3383097 | MS.gene21633:CDS | 40.0% |
!!! | TTTTTTGAAGGACAACGCTC+AGG | - | chr5.2:3383077-3383096 | MS.gene21633:CDS | 40.0% |
AAGACCAAAGAGTGAAGTGG+AGG | - | chr5.2:3383111-3383130 | MS.gene21633:CDS | 45.0% | |
AGACCAAAGAGTGAAGTGGA+GGG | - | chr5.2:3383112-3383131 | MS.gene21633:CDS | 45.0% | |
ATACACCACAACCTCAACCA+TGG | - | chr5.2:3385394-3385413 | MS.gene21633:intron | 45.0% | |
ATCATGGCAGATTGAGAGAG+GGG | + | chr5.2:3383765-3383784 | None:intergenic | 45.0% | |
CAAAGTTCACCCAGCTAAAG+TGG | - | chr5.2:3385732-3385751 | MS.gene21633:intron | 45.0% | |
CAAGTACTTGCTTTCTCCAC+TGG | + | chr5.2:3384913-3384932 | None:intergenic | 45.0% | |
CAGAGCCTTTGCAAAATCAC+AGG | - | chr5.2:3385502-3385521 | MS.gene21633:intron | 45.0% | |
GCTGGGTGAACTTTGATTGA+AGG | + | chr5.2:3385727-3385746 | None:intergenic | 45.0% | |
GTACATATGCCTTGTGTTGC+AGG | - | chr5.2:3384344-3384363 | MS.gene21633:CDS | 45.0% | |
GTTGGAGGATACTATGATGC+TGG | - | chr5.2:3383890-3383909 | MS.gene21633:intron | 45.0% | |
TAGTACCATGGTTGAGGTTG+TGG | + | chr5.2:3385402-3385421 | None:intergenic | 45.0% | |
TTGTACCCCAACGAATAGCA+CGG | + | chr5.2:3384027-3384046 | None:intergenic | 45.0% | |
! | CTTGGAGTATCCATGTCTTC+CGG | + | chr5.2:3384454-3384473 | None:intergenic | 45.0% |
! | GGAATTCTATGGTGGGAAGA+AGG | - | chr5.2:3385143-3385162 | MS.gene21633:intron | 45.0% |
! | TGCAAAGGCTCTGATTTCAG+AGG | + | chr5.2:3385495-3385514 | None:intergenic | 45.0% |
! | TGTGATTGCTAGGTTGGAGA+AGG | - | chr5.2:3384400-3384419 | MS.gene21633:CDS | 45.0% |
!! | AAGTATAGAGGCACCTACAC+GGG | - | chr5.2:3384714-3384733 | MS.gene21633:intron | 45.0% |
!! | CAAGTATAGAGGCACCTACA+CGG | - | chr5.2:3384713-3384732 | MS.gene21633:intron | 45.0% |
CACGGCGGAGATAATCAATC+TGG | + | chr5.2:3384009-3384028 | None:intergenic | 50.0% | |
CCAGAGTACGAGCAGTAGAA+TGG | + | chr5.2:3384747-3384766 | None:intergenic | 50.0% | |
CCATTCTACTGCTCGTACTC+TGG | - | chr5.2:3384744-3384763 | MS.gene21633:intron | 50.0% | |
CTTTGGCAGGTGAATCTGGT+TGG | - | chr5.2:3383872-3383891 | MS.gene21633:intron | 50.0% | |
GAATGGACAAGAACCCGTGT+AGG | + | chr5.2:3384730-3384749 | None:intergenic | 50.0% | |
GACCAAAGAGTGAAGTGGAG+GGG | - | chr5.2:3383113-3383132 | MS.gene21633:CDS | 50.0% | |
GCTTGGTTATACAAGGCCAG+TGG | - | chr5.2:3384894-3384913 | MS.gene21633:CDS | 50.0% | |
TGCTAATTCCCCTGGAACTG+AGG | - | chr5.2:3384492-3384511 | MS.gene21633:CDS | 50.0% | |
! | AACTGTTATGGGCTGCTGCT+TGG | - | chr5.2:3384877-3384896 | MS.gene21633:CDS | 50.0% |
! | GGCTGCTGCTTGGTTATACA+AGG | - | chr5.2:3384887-3384906 | MS.gene21633:CDS | 50.0% |
!! | CATGTGGGTGCTATTGTTGG+AGG | - | chr5.2:3385811-3385830 | MS.gene21633:CDS | 50.0% |
!! | TCATCAATGTTGGGAGCGTC+CGG | - | chr5.2:3384432-3384451 | MS.gene21633:CDS | 50.0% |
ACATGCCTGTGTGAAGAGCG+TGG | + | chr5.2:3384080-3384099 | None:intergenic | 55.0% | |
ACGCTGCCTGATTCCAACCT+TGG | + | chr5.2:3384953-3384972 | None:intergenic | 55.0% | |
CTCCCCTCCACTTCACTCTT+TGG | + | chr5.2:3383118-3383137 | None:intergenic | 55.0% | |
GGAGACTCAGCTCTCTCTGA+TGG | - | chr5.2:3383134-3383153 | MS.gene21633:CDS | 55.0% | |
TACCCCAACGAATAGCACGG+CGG | + | chr5.2:3384024-3384043 | None:intergenic | 55.0% | |
TCCAACCACGCTCTTCACAC+AGG | - | chr5.2:3384072-3384091 | MS.gene21633:intron | 55.0% | |
TGGCAGGTGAATCTGGTTGG+AGG | - | chr5.2:3383875-3383894 | MS.gene21633:intron | 55.0% | |
! | ATCTCCGCCGTGCTATTCGT+TGG | - | chr5.2:3384017-3384036 | MS.gene21633:CDS | 55.0% |
! | TCTCCGCCGTGCTATTCGTT+GGG | - | chr5.2:3384018-3384037 | MS.gene21633:CDS | 55.0% |
!! | AGATTGAGAGAGGGGCACTG+AGG | + | chr5.2:3383757-3383776 | None:intergenic | 55.0% |
!! | ATTGAGAGAGGGGCACTGAG+GGG | + | chr5.2:3383755-3383774 | None:intergenic | 55.0% |
!! | GATTGAGAGAGGGGCACTGA+GGG | + | chr5.2:3383756-3383775 | None:intergenic | 55.0% |
AGCTGCAGCCTCAGTTCCAG+GGG | + | chr5.2:3384503-3384522 | None:intergenic | 60.0% | |
AGGCAGCGTCTGAGTTCAGC+TGG | - | chr5.2:3384964-3384983 | MS.gene21633:CDS | 60.0% | |
CAGCTGCAGCCTCAGTTCCA+GGG | + | chr5.2:3384504-3384523 | None:intergenic | 60.0% | |
GGCAGCGTCTGAGTTCAGCT+GGG | - | chr5.2:3384965-3384984 | MS.gene21633:CDS | 60.0% | |
TCAGCTGCAGCCTCAGTTCC+AGG | + | chr5.2:3384505-3384524 | None:intergenic | 60.0% | |
TGGAACTGAGGCTGCAGCTG+AGG | - | chr5.2:3384504-3384523 | MS.gene21633:CDS | 60.0% | |
! | CTCCGCCGTGCTATTCGTTG+GGG | - | chr5.2:3384019-3384038 | MS.gene21633:CDS | 60.0% |
! | GCCTGTGTGAAGAGCGTGGT+TGG | + | chr5.2:3384076-3384095 | None:intergenic | 60.0% |
!! | TTGGGAGCGTCCGGAAGACA+TGG | - | chr5.2:3384441-3384460 | MS.gene21633:CDS | 60.0% |
!! | AGAGAGGGGCACTGAGGGGT+TGG | + | chr5.2:3383751-3383770 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.2 | gene | 3382969 | 3385966 | 3382969 | ID=MS.gene21633 |
chr5.2 | mRNA | 3382969 | 3385966 | 3382969 | ID=MS.gene21633.t1;Parent=MS.gene21633 |
chr5.2 | exon | 3385766 | 3385966 | 3385766 | ID=MS.gene21633.t1.exon1;Parent=MS.gene21633.t1 |
chr5.2 | CDS | 3385766 | 3385966 | 3385766 | ID=cds.MS.gene21633.t1;Parent=MS.gene21633.t1 |
chr5.2 | exon | 3384842 | 3385054 | 3384842 | ID=MS.gene21633.t1.exon2;Parent=MS.gene21633.t1 |
chr5.2 | CDS | 3384842 | 3385054 | 3384842 | ID=cds.MS.gene21633.t1;Parent=MS.gene21633.t1 |
chr5.2 | exon | 3384323 | 3384523 | 3384323 | ID=MS.gene21633.t1.exon3;Parent=MS.gene21633.t1 |
chr5.2 | CDS | 3384323 | 3384523 | 3384323 | ID=cds.MS.gene21633.t1;Parent=MS.gene21633.t1 |
chr5.2 | exon | 3384162 | 3384239 | 3384162 | ID=MS.gene21633.t1.exon4;Parent=MS.gene21633.t1 |
chr5.2 | CDS | 3384162 | 3384239 | 3384162 | ID=cds.MS.gene21633.t1;Parent=MS.gene21633.t1 |
chr5.2 | exon | 3383910 | 3384062 | 3383910 | ID=MS.gene21633.t1.exon5;Parent=MS.gene21633.t1 |
chr5.2 | CDS | 3383910 | 3384062 | 3383910 | ID=cds.MS.gene21633.t1;Parent=MS.gene21633.t1 |
chr5.2 | exon | 3383683 | 3383791 | 3383683 | ID=MS.gene21633.t1.exon6;Parent=MS.gene21633.t1 |
chr5.2 | CDS | 3383683 | 3383791 | 3383683 | ID=cds.MS.gene21633.t1;Parent=MS.gene21633.t1 |
chr5.2 | exon | 3383412 | 3383578 | 3383412 | ID=MS.gene21633.t1.exon7;Parent=MS.gene21633.t1 |
chr5.2 | CDS | 3383412 | 3383578 | 3383412 | ID=cds.MS.gene21633.t1;Parent=MS.gene21633.t1 |
chr5.2 | exon | 3382969 | 3383310 | 3382969 | ID=MS.gene21633.t1.exon8;Parent=MS.gene21633.t1 |
chr5.2 | CDS | 3382969 | 3383310 | 3382969 | ID=cds.MS.gene21633.t1;Parent=MS.gene21633.t1 |
Gene Sequence |
Protein sequence |