AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene024647


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene024647.t1 MTR_5g010000 94.021 485 28 1 1 484 16 500 0.0 895
MS.gene024647.t1 MTR_5g009970 85.263 475 69 1 5 478 21 495 0.0 819
MS.gene024647.t1 MTR_5g009970 85.714 413 58 1 67 478 9 421 0.0 716
MS.gene024647.t1 MTR_5g009970 85.279 394 57 1 86 478 1 394 0.0 677
MS.gene024647.t1 MTR_5g009970 85.276 326 47 1 154 478 1 326 0.0 550
MS.gene024647.t1 MTR_3g080810 54.095 464 200 6 25 478 35 495 1.42e-175 509
MS.gene024647.t1 MTR_3g117500 50.529 473 221 5 16 477 15 485 3.99e-164 479
MS.gene024647.t1 MTR_8g104820 49.679 467 218 8 21 474 26 488 6.71e-161 471
MS.gene024647.t1 MTR_5g085730 48.643 479 226 7 16 477 22 497 3.93e-160 471
MS.gene024647.t1 MTR_3g080190 48.734 474 223 7 21 477 36 506 2.94e-156 461
MS.gene024647.t1 MTR_3g105230 48.315 445 226 4 23 466 28 469 8.04e-156 458
MS.gene024647.t1 MTR_3g010330 49.573 468 224 7 19 478 19 482 5.90e-155 456
MS.gene024647.t1 MTR_5g093590 49.149 470 220 8 24 476 33 500 4.17e-154 454
MS.gene024647.t1 MTR_3g023740 49.119 454 227 4 24 476 29 479 4.38e-154 454
MS.gene024647.t1 MTR_1g088190 49.353 464 205 6 22 476 36 478 5.26e-152 449
MS.gene024647.t1 MTR_4g035955 48.172 465 232 4 15 474 4 464 1.04e-151 447
MS.gene024647.t1 MTR_8g099410 48.421 475 225 7 21 479 24 494 2.52e-151 448
MS.gene024647.t1 MTR_8g099410 48.421 475 225 7 21 479 24 494 7.79e-150 448
MS.gene024647.t1 MTR_4g074960 46.906 501 235 10 24 497 27 523 1.60e-149 447
MS.gene024647.t1 MTR_4g035930 47.692 455 229 4 25 474 15 465 1.78e-149 441
MS.gene024647.t1 MTR_4g035975 46.996 466 228 7 24 474 26 487 1.92e-145 432
MS.gene024647.t1 MTR_1g037340 48.478 460 226 6 25 476 25 481 4.90e-143 426
MS.gene024647.t1 MTR_3g113720 43.277 476 250 6 26 486 58 528 5.75e-131 396
MS.gene024647.t1 MTR_5g010010 99.451 182 1 0 478 659 52 233 1.73e-128 379
MS.gene024647.t1 MTR_8g075990 45.085 468 237 6 26 478 64 526 7.25e-128 388
MS.gene024647.t1 MTR_2g028480 39.921 506 253 13 25 493 111 602 9.09e-101 321
MS.gene024647.t1 MTR_3g090540 38.037 489 254 15 25 476 107 583 9.48e-99 315
MS.gene024647.t1 MTR_3g082440 37.251 502 269 14 25 493 116 604 6.73e-92 298
MS.gene024647.t1 MTR_1g088190 48.693 306 128 5 22 318 36 321 1.34e-85 272
MS.gene024647.t1 MTR_7g108925 47.771 157 81 1 320 476 43 198 6.32e-49 171
MS.gene024647.t1 MTR_0393s0050 48.966 145 72 2 320 463 20 163 2.37e-40 146
MS.gene024647.t1 MTR_1g037320 48.447 161 78 2 86 242 1 160 1.43e-39 147
MS.gene024647.t1 MTR_1g037320 52.459 122 56 2 354 474 169 289 8.07e-33 128
MS.gene024647.t1 MTR_4g128810 38.095 168 101 1 329 496 189 353 3.00e-32 129
MS.gene024647.t1 MTR_7g053480 75.000 44 11 0 479 522 53 96 3.01e-14 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene024647.t1 AT4G23560 69.583 480 144 1 1 480 1 478 0.0 679
MS.gene024647.t1 AT4G09740 68.333 480 150 1 1 480 1 478 0.0 669
MS.gene024647.t1 AT1G02800 54.644 463 196 6 23 476 41 498 6.77e-175 508
MS.gene024647.t1 AT4G02290 51.732 462 211 5 22 474 49 507 6.70e-168 490
MS.gene024647.t1 AT1G23210 51.178 467 214 6 15 471 18 480 2.98e-167 488
MS.gene024647.t1 AT1G70710 51.522 460 211 5 21 471 24 480 1.51e-166 486
MS.gene024647.t1 AT4G39010 50.417 480 222 7 18 485 22 497 4.69e-165 482
MS.gene024647.t1 AT1G71380 49.684 475 228 6 7 474 6 476 2.28e-155 457
MS.gene024647.t1 AT3G43860 49.561 456 226 4 25 479 34 486 1.80e-153 452
MS.gene024647.t1 AT3G43860 49.561 456 226 4 25 479 34 486 1.80e-153 452
MS.gene024647.t1 AT2G32990 47.210 466 230 7 24 474 38 502 5.11e-152 450
MS.gene024647.t1 AT1G22880 49.469 471 227 6 19 482 18 484 7.95e-152 448
MS.gene024647.t1 AT4G11050 45.968 496 245 8 22 501 23 511 2.00e-149 444
MS.gene024647.t1 AT4G11050 45.968 496 245 8 22 501 23 511 4.28e-148 444
MS.gene024647.t1 AT4G11050 45.968 496 245 8 22 501 23 511 4.51e-148 444
MS.gene024647.t1 AT1G64390 44.800 500 252 9 22 504 22 514 1.11e-145 437
MS.gene024647.t1 AT4G39000 47.097 465 228 7 24 474 24 484 2.10e-145 432
MS.gene024647.t1 AT2G44570 48.069 466 229 7 21 476 29 491 5.93e-144 428
MS.gene024647.t1 AT1G48930 50.108 465 216 6 24 474 29 491 1.06e-143 432
MS.gene024647.t1 AT4G38990 46.285 471 236 6 20 474 18 487 1.62e-143 427
MS.gene024647.t1 AT2G44540 47.835 462 229 6 25 477 33 491 5.03e-142 423
MS.gene024647.t1 AT2G44560 48.373 461 226 6 25 476 33 490 8.91e-141 420
MS.gene024647.t1 AT2G44550 46.331 477 235 9 11 477 25 490 5.10e-138 413
MS.gene024647.t1 AT1G19940 46.070 458 231 5 25 471 48 500 4.32e-134 404
MS.gene024647.t1 AT1G19940 46.070 458 231 5 25 471 48 500 4.32e-134 404
MS.gene024647.t1 AT4G02290 48.744 398 192 5 86 474 1 395 2.19e-131 393
MS.gene024647.t1 AT1G75680 47.033 455 221 7 26 467 58 505 4.06e-131 396
MS.gene024647.t1 AT1G22880 47.772 404 200 6 86 482 1 400 3.25e-123 372
MS.gene024647.t1 AT4G39010 47.554 368 179 6 18 373 22 387 7.28e-116 352
MS.gene024647.t1 AT1G63970 83.237 173 29 0 487 659 59 231 6.65e-101 308
MS.gene024647.t1 AT2G44570 44.709 378 197 6 21 389 29 403 2.75e-100 313
MS.gene024647.t1 AT5G49720 39.406 505 259 13 25 493 108 601 1.55e-97 312
MS.gene024647.t1 AT1G19940 44.321 361 189 4 25 374 48 407 9.26e-95 299
MS.gene024647.t1 AT4G24260 38.835 515 264 15 25 501 108 609 3.93e-92 298
MS.gene024647.t1 AT1G65610 35.586 503 275 15 25 493 116 603 2.29e-90 293
MS.gene024647.t1 AT1G22880 49.515 309 146 5 19 320 18 323 2.97e-89 281
MS.gene024647.t1 AT4G38990 42.442 344 174 5 20 358 18 342 3.15e-82 263
MS.gene024647.t1 AT1G63970 81.818 99 18 0 487 585 59 157 2.06e-55 186
MS.gene024647.t1 AT4G24260 36.951 387 201 12 25 374 108 488 2.79e-55 196
MS.gene024647.t1 AT4G24260 42.657 286 131 9 25 281 108 389 3.08e-51 184
MS.gene024647.t1 AT3G42153 58.696 92 34 1 231 318 16 107 7.08e-30 114

Find 156 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTGGTTATCCTTTAATTAT+TGG 0.154047 5.1:+3508643 MS.gene024647:CDS
CTCCCCTCCACTTCACTCTT+TGG 0.212758 5.1:-3504581 None:intergenic
TGTTATTTGTCATGGGTAAA+TGG 0.220078 5.1:+3504427 None:intergenic
TTAATTCCACCAATAATTAA+AGG 0.221109 5.1:-3508652 None:intergenic
ATGTCATACATGGTGGGATA+TGG 0.230083 5.1:+3506522 MS.gene024647:CDS
ATGAAAAGGATGAACTATTA+TGG 0.237262 5.1:+3505723 MS.gene024647:intron
CCAGAGTACGAGCAGTAAAA+TGG 0.238707 5.1:-3505598 None:intergenic
AACTATTATGGGCTGCTTCT+TGG 0.270350 5.1:+3505735 MS.gene024647:CDS
AATGAATTCATCATCCATTA+TGG 0.281543 5.1:-3504463 None:intergenic
TCAGCTGCAGCCTCAGTTCC+AGG 0.287596 5.1:-3505208 None:intergenic
TTGTATTGGTCATTAGAATT+TGG 0.289530 5.1:-3506696 None:intergenic
CCCACATGAATATTAGGATT+TGG 0.290939 5.1:-3506657 None:intergenic
CTGCTCGTACTCTGGTTATC+AGG 0.293044 5.1:+3505606 MS.gene024647:CDS
TCAATCTTGTAAGTTGTTCT+TGG 0.295072 5.1:-3505175 None:intergenic
CGCTTCTGTGGTAAATATAA+AGG 0.303097 5.1:+3511753 MS.gene024647:CDS
CCTCTGTGATGTAATTGTTT+TGG 0.305598 5.1:-3506555 None:intergenic
CTTGGTGTATCCATGTCTTC+TGG 0.334811 5.1:-3505157 None:intergenic
ACATAGGTGGACTACATATT+AGG 0.343969 5.1:+3506483 MS.gene024647:intron
ATCTGTAGAGAGCTACTTCC+TGG 0.344038 5.1:-3506085 None:intergenic
ATAGCACCCACATGAATATT+AGG 0.348295 5.1:-3506663 None:intergenic
CATGAGGCAGGTTATGATAT+TGG 0.350566 5.1:+3511637 MS.gene024647:CDS
GTGTCATTGGCAGGTGGATT+TGG 0.356090 5.1:+3504769 MS.gene024647:intron
CATTGGCAGGTGGATTTGGT+TGG 0.371328 5.1:+3504773 MS.gene024647:intron
TCTTCGCAGTGCTATTCGTT+GGG 0.375871 5.1:+3504919 MS.gene024647:CDS
GCTTTAGGTCTTCCTGATAT+AGG 0.382227 5.1:+3509672 MS.gene024647:CDS
AGCTGGGATAACAAATTTGT+TGG 0.384877 5.1:+3505839 MS.gene024647:CDS
TCCTTGTGTGGGCTTAGTTT+CGG 0.392429 5.1:-3511691 None:intergenic
CAGATCTTGCATCATTGTAT+TGG 0.398459 5.1:-3506710 None:intergenic
TTGAAGGAGTAGCTGAGATT+GGG 0.399469 5.1:-3508570 None:intergenic
GAATGGATTATTAGCCATAA+TGG 0.408259 5.1:+3504449 MS.gene024647:CDS
GGTTCTGTTGCAGCTTTGCT+TGG 0.409254 5.1:+3506780 MS.gene024647:CDS
TTTGAAGGAGTAGCTGAGAT+TGG 0.416166 5.1:-3508571 None:intergenic
CACCATGTATGACATCTTCA+TGG 0.417078 5.1:-3506514 None:intergenic
TCATTGCACCCCACTTTGGC+AGG 0.417272 5.1:-3506606 None:intergenic
TTCACCATCAGTCTTAATCT+TGG 0.417439 5.1:-3506041 None:intergenic
GTCGATTTCAATTGAGGTTG+TGG 0.427587 5.1:-3508542 None:intergenic
ATCTTCGCAGTGCTATTCGT+TGG 0.429802 5.1:+3504918 MS.gene024647:CDS
CACTTCACTCTTTGGTCCTT+AGG 0.430996 5.1:-3504573 None:intergenic
GGATTTGTCGATTTCAATTG+AGG 0.442600 5.1:-3508548 None:intergenic
TGGCAGGTGGATTTGGTTGG+AGG 0.444755 5.1:+3504776 MS.gene024647:intron
GTGGAAGGGTTGTGATTCTT+CGG 0.447373 5.1:+3509722 MS.gene024647:CDS
TGAAAAGGATGAACTATTAT+GGG 0.456313 5.1:+3505724 MS.gene024647:intron
TGGAACTGAGGCTGCAGCTG+AGG 0.459683 5.1:+3505210 MS.gene024647:CDS
GGTTATCCTTTAATTATTGG+TGG 0.460157 5.1:+3508646 MS.gene024647:CDS
AGAATATACTCACAGATTCA+TGG 0.463953 5.1:-3509752 None:intergenic
ATTCATGTGGGTGCTATTGT+TGG 0.466637 5.1:+3506669 MS.gene024647:CDS
AAGCAGTGTCTGAATTCAGC+TGG 0.468104 5.1:+3505822 MS.gene024647:CDS
CATGAAAAGGTTGATAGCCT+TGG 0.468863 5.1:+3511784 MS.gene024647:CDS
GAAACGCAGATCATAATTGT+TGG 0.470658 5.1:+3505128 MS.gene024647:CDS
TAGATGAAGAGAAATAGTTC+TGG 0.473162 5.1:-3506632 None:intergenic
TTTGTCATGGGTAAATGGAA+TGG 0.474409 5.1:+3504432 None:intergenic
CCCACACAAGGATGCTATCA+AGG 0.475088 5.1:+3511702 MS.gene024647:CDS
GCGGGTGATAATGTGAAGTT+TGG 0.476392 5.1:+3504809 MS.gene024647:CDS
TCGATTTCAATTGAGGTTGT+GGG 0.478553 5.1:-3508541 None:intergenic
GCCATCATTGCACCCCACTT+TGG 0.479110 5.1:-3506610 None:intergenic
TTGAGATATGATTGAAGGGA+TGG 0.481296 5.1:-3506583 None:intergenic
TTACGGTGAGCTTGTTGAGT+TGG 0.481846 5.1:+3504846 MS.gene024647:CDS
GCCAAAGTGGGGTGCAATGA+TGG 0.482616 5.1:+3506609 MS.gene024647:CDS
GCAGGTTGAGATATGATTGA+AGG 0.483094 5.1:-3506588 None:intergenic
AAACCATGGCCAACCCGAAA+AGG 0.483370 5.1:-3508601 None:intergenic
TGCAAAGGCTCTAATTTCAG+AGG 0.483766 5.1:-3506376 None:intergenic
GCCTTGATAGCATCCTTGTG+TGG 0.485497 5.1:-3511703 None:intergenic
TCCAAGCAGTGCAGATAAGT+TGG 0.486196 5.1:-3511725 None:intergenic
TGTCATACATGGTGGGATAT+GGG 0.486645 5.1:+3506523 MS.gene024647:CDS
TAGCACCATGGTTGAGGTTG+TGG 0.489282 5.1:-3506283 None:intergenic
CAGAGTACGAGCAGTAAAAT+GGG 0.494790 5.1:-3505597 None:intergenic
TTCCACTTAGGATCAGAATC+AGG 0.496430 5.1:-3509705 None:intergenic
ATATGAAAGTGAGATTTCTT+CGG 0.496777 5.1:+3504880 MS.gene024647:CDS
GACCTTCATCGATTGGAACC+TGG 0.499572 5.1:+3508625 MS.gene024647:CDS
AAGATTGATTCGAATTCCCC+TGG 0.503739 5.1:+3505190 MS.gene024647:CDS
ACACTGCTTGACTCCAACCT+TGG 0.505167 5.1:-3505808 None:intergenic
CCTTGATAGCATCCTTGTGT+GGG 0.507271 5.1:-3511702 None:intergenic
CGAAAAGGAAGAACCTTTGA+AGG 0.510185 5.1:-3508586 None:intergenic
GGAATTCTATGGCGGGAAGA+AGG 0.510525 5.1:+3506012 MS.gene024647:intron
ATTAATATACCTCATGATAG+AGG 0.512773 5.1:+3508670 MS.gene024647:CDS
GCCAACTTATCTGCACTGCT+TGG 0.513880 5.1:+3511724 MS.gene024647:CDS
TTTATATGTGCATTGATGCC+AGG 0.514115 5.1:+3506067 MS.gene024647:CDS
AACAAAAGCAGCATTCGAAT+AGG 0.514537 5.1:-3506757 None:intergenic
GTGATAATGTGAAGTTTGGT+TGG 0.518804 5.1:+3504813 MS.gene024647:CDS
AATGAATAGCACCATGGTTG+AGG 0.521095 5.1:-3506289 None:intergenic
CAGCTGCAGCCTCAGTTCCA+GGG 0.523289 5.1:-3505207 None:intergenic
GGCTGCTTCTTGGCTATACA+AGG 0.523550 5.1:+3505745 MS.gene024647:CDS
AAACGCAGATCATAATTGTT+GGG 0.523983 5.1:+3505129 MS.gene024647:CDS
CATGTGGGTGCTATTGTTGG+AGG 0.529821 5.1:+3506672 MS.gene024647:CDS
CAAATATAGAGGTTCTTACT+CGG 0.533103 5.1:+3505567 MS.gene024647:CDS
GTTGGAGGATACTACGACGC+GGG 0.534176 5.1:+3504791 MS.gene024647:CDS
TTCCTGATTCTGATCCTAAG+TGG 0.534340 5.1:+3509703 MS.gene024647:CDS
TAGAGCCTTTGCAAAATCAC+AGG 0.537879 5.1:+3506386 MS.gene024647:CDS
CATATCTCAACCTGCCAAAG+TGG 0.541021 5.1:+3506596 MS.gene024647:CDS
CTTGGCTATACAAGGCTAGT+GGG 0.541408 5.1:+3505753 MS.gene024647:CDS
GTCAGACTTATGCATGAGGC+AGG 0.542152 5.1:+3511625 MS.gene024647:CDS
ATATCTCAACCTGCCAAAGT+GGG 0.542805 5.1:+3506597 MS.gene024647:CDS
GGAGACTCGGCTCTCTCTGA+TGG 0.543154 5.1:+3504600 MS.gene024647:CDS
TCCAAATCCTAATATTCATG+TGG 0.544345 5.1:+3506656 MS.gene024647:CDS
CCAATAATTAAAGGATAACC+AGG 0.547141 5.1:-3508643 None:intergenic
TTCGAATTCCCCTGGAACTG+AGG 0.548903 5.1:+3505198 MS.gene024647:CDS
CTTCGCAGTGCTATTCGTTG+GGG 0.551133 5.1:+3504920 MS.gene024647:CDS
GAATCACAACCCTTCCACTT+AGG 0.553850 5.1:-3509717 None:intergenic
TGATTCTGATCCTAAGTGGA+AGG 0.553947 5.1:+3509707 MS.gene024647:CDS
AATCTCAGCTACTCCTTCAA+AGG 0.560362 5.1:+3508573 MS.gene024647:CDS
CACTGCGAAGATAATCAAGC+TGG 0.565610 5.1:-3504907 None:intergenic
AACCAGGTTCCAATCGATGA+AGG 0.565616 5.1:-3508627 None:intergenic
AAATATAGAGGTTCTTACTC+GGG 0.568349 5.1:+3505568 MS.gene024647:CDS
GCAAAGGCTCTAATTTCAGA+GGG 0.569361 5.1:-3506375 None:intergenic
TGTGATTGCTAGGTGGGAGA+TGG 0.571605 5.1:+3505106 MS.gene024647:intron
TTCTCAAGGAATTCTATGGC+GGG 0.576719 5.1:+3506005 MS.gene024647:intron
AGTGAAGTGGAGGGGAGACT+CGG 0.577463 5.1:+3504587 MS.gene024647:CDS
ACATCACAAGTAACCAAGGT+TGG 0.578483 5.1:+3505795 MS.gene024647:CDS
TTTCTCAAGGAATTCTATGG+CGG 0.583307 5.1:+3506004 MS.gene024647:intron
GACCAAAGAGTGAAGTGGAG+GGG 0.583433 5.1:+3504579 MS.gene024647:CDS
TGAAGGAGTAGCTGAGATTG+GGG 0.585122 5.1:-3508569 None:intergenic
TCTTGGCTATACAAGGCTAG+TGG 0.585201 5.1:+3505752 MS.gene024647:CDS
AGCTGCAGCCTCAGTTCCAG+GGG 0.585982 5.1:-3505206 None:intergenic
GGACCAAAGAGTGAAGTGGA+GGG 0.589111 5.1:+3504578 MS.gene024647:CDS
TTGGGAGCGTCCAGAAGACA+TGG 0.591746 5.1:+3505147 MS.gene024647:CDS
GGTTGCGAGGCTCATTCTGA+TGG 0.591970 5.1:+3508691 MS.gene024647:CDS
ACCAACCACGCTCTTTACAC+AGG 0.592498 5.1:+3504973 MS.gene024647:CDS
CTACAGATTAGAACAACTCC+AGG 0.598543 5.1:+3506100 MS.gene024647:CDS
GCTTGGAGTTGACGCTTCTG+TGG 0.600936 5.1:+3511741 MS.gene024647:CDS
CCAAATCCTAATATTCATGT+GGG 0.601860 5.1:+3506657 MS.gene024647:CDS
CAGGTTGAGATATGATTGAA+GGG 0.604313 5.1:-3506587 None:intergenic
ACCATGTATGACATCTTCAT+GGG 0.604739 5.1:-3506513 None:intergenic
ACGCTCAGGGAAGTTGCCTA+AGG 0.607352 5.1:+3504557 MS.gene024647:CDS
TCCCATGAAGATGTCATACA+TGG 0.607679 5.1:+3506512 MS.gene024647:CDS
GGATGTTCTGCTTCACTGCG+TGG 0.611052 5.1:+3509632 MS.gene024647:CDS
AAAAGCAGCATTCGAATAGG+TGG 0.611197 5.1:-3506754 None:intergenic
AGCTCAAACATTACTAACAC+AGG 0.615406 5.1:+3505862 MS.gene024647:CDS
ACCTCATGATAGAGGTTGCG+AGG 0.621758 5.1:+3508678 MS.gene024647:CDS
ACCTGTGTAAAGAGCGTGGT+TGG 0.623720 5.1:-3504974 None:intergenic
AATTGAAGCAGCAGAAAGAG+CGG 0.625859 5.1:-3505239 None:intergenic
GCCGAAACTAAGCCCACACA+AGG 0.626457 5.1:+3511690 MS.gene024647:CDS
ATGCAACATTGATACTTCAG+AGG 0.627600 5.1:+3511668 MS.gene024647:CDS
TTAGCCAAGATTAAGACTGA+TGG 0.628467 5.1:+3506037 MS.gene024647:CDS
AGCAGTGTCTGAATTCAGCT+GGG 0.628902 5.1:+3505823 MS.gene024647:CDS
ATGAAGATGTCATACATGGT+GGG 0.629064 5.1:+3506516 MS.gene024647:CDS
AGGACCAAAGAGTGAAGTGG+AGG 0.629253 5.1:+3504577 MS.gene024647:CDS
GATTCTGATCCTAAGTGGAA+GGG 0.630398 5.1:+3509708 MS.gene024647:CDS
ATCGATGAAGGTCAAAACCA+TGG 0.631860 5.1:-3508615 None:intergenic
GCAGCATTCGAATAGGTGGT+AGG 0.633283 5.1:-3506750 None:intergenic
AAAGGCTCTAATTTCAGAGG+GGG 0.637646 5.1:-3506373 None:intergenic
TGCATAGTCATAATTAGCTG+AGG 0.638379 5.1:-3504496 None:intergenic
TTGGCTATACAAGGCTAGTG+GGG 0.646701 5.1:+3505754 MS.gene024647:CDS
GCCTCGCAACCTCTATCATG+AGG 0.647110 5.1:-3508679 None:intergenic
CATGAAGATGTCATACATGG+TGG 0.650028 5.1:+3506515 MS.gene024647:CDS
GGAGAAAATGAATAGCACCA+TGG 0.650294 5.1:-3506295 None:intergenic
CTAAGGACCAAAGAGTGAAG+TGG 0.660145 5.1:+3504574 MS.gene024647:CDS
TATCTCAACCTGCCAAAGTG+GGG 0.664840 5.1:+3506598 MS.gene024647:CDS
AAGCTCACCGTAAAAGACAT+CGG 0.669269 5.1:-3504836 None:intergenic
CATATTGATGGAATTCAGTG+TGG 0.674538 5.1:+3506336 MS.gene024647:CDS
ATATACCACAACCTCAACCA+TGG 0.675960 5.1:+3506278 MS.gene024647:CDS
TCACACCTGTGTAAAGAGCG+TGG 0.687393 5.1:-3504978 None:intergenic
ACGTACATCACAAGTAACCA+AGG 0.694288 5.1:+3505791 MS.gene024647:CDS
ACAGGTCAGACTTATGCATG+AGG 0.696663 5.1:+3511621 MS.gene024647:intron
CAAAGGCTCTAATTTCAGAG+GGG 0.704501 5.1:-3506374 None:intergenic
CCAAAACAATTACATCACAG+AGG 0.744075 5.1:+3506555 MS.gene024647:CDS
GGTTGGAGGATACTACGACG+CGG 0.797840 5.1:+3504790 MS.gene024647:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content


Chromosome Type Strat End Strand Name
chr5.1 gene 3504438 3511858 3504438 ID=MS.gene024647
chr5.1 mRNA 3504438 3511858 3504438 ID=MS.gene024647.t1;Parent=MS.gene024647
chr5.1 exon 3504438 3504635 3504438 ID=MS.gene024647.t1.exon1;Parent=MS.gene024647.t1
chr5.1 CDS 3504438 3504635 3504438 ID=cds.MS.gene024647.t1;Parent=MS.gene024647.t1
chr5.1 exon 3504782 3504994 3504782 ID=MS.gene024647.t1.exon2;Parent=MS.gene024647.t1
chr5.1 CDS 3504782 3504994 3504782 ID=cds.MS.gene024647.t1;Parent=MS.gene024647.t1
chr5.1 exon 3505118 3505318 3505118 ID=MS.gene024647.t1.exon3;Parent=MS.gene024647.t1
chr5.1 CDS 3505118 3505318 3505118 ID=cds.MS.gene024647.t1;Parent=MS.gene024647.t1
chr5.1 exon 3505550 3505627 3505550 ID=MS.gene024647.t1.exon4;Parent=MS.gene024647.t1
chr5.1 CDS 3505550 3505627 3505550 ID=cds.MS.gene024647.t1;Parent=MS.gene024647.t1
chr5.1 exon 3505731 3505883 3505731 ID=MS.gene024647.t1.exon5;Parent=MS.gene024647.t1
chr5.1 CDS 3505731 3505883 3505731 ID=cds.MS.gene024647.t1;Parent=MS.gene024647.t1
chr5.1 exon 3506013 3506121 3506013 ID=MS.gene024647.t1.exon6;Parent=MS.gene024647.t1
chr5.1 CDS 3506013 3506121 3506013 ID=cds.MS.gene024647.t1;Parent=MS.gene024647.t1
chr5.1 exon 3506241 3506407 3506241 ID=MS.gene024647.t1.exon7;Parent=MS.gene024647.t1
chr5.1 CDS 3506241 3506407 3506241 ID=cds.MS.gene024647.t1;Parent=MS.gene024647.t1
chr5.1 exon 3506489 3506801 3506489 ID=MS.gene024647.t1.exon8;Parent=MS.gene024647.t1
chr5.1 CDS 3506489 3506801 3506489 ID=cds.MS.gene024647.t1;Parent=MS.gene024647.t1
chr5.1 exon 3508530 3508712 3508530 ID=MS.gene024647.t1.exon9;Parent=MS.gene024647.t1
chr5.1 CDS 3508530 3508712 3508530 ID=cds.MS.gene024647.t1;Parent=MS.gene024647.t1
chr5.1 exon 3509631 3509761 3509631 ID=MS.gene024647.t1.exon10;Parent=MS.gene024647.t1
chr5.1 CDS 3509631 3509761 3509631 ID=cds.MS.gene024647.t1;Parent=MS.gene024647.t1
chr5.1 exon 3511625 3511858 3511625 ID=MS.gene024647.t1.exon11;Parent=MS.gene024647.t1
chr5.1 CDS 3511625 3511858 3511625 ID=cds.MS.gene024647.t1;Parent=MS.gene024647.t1
Gene Sequence

>MS.gene024647

ATGGGTAAATGGAATGGATTATTAGCCATAATGGATGATGAATTCATTAATACAAATTCCTCAGCTAATTATGACTATGCAGATGCTCTTGACAAAGCCATCATGTTTTTTGAAGGACAACGCTCAGGGAAGTTGCCTAAGGACCAAAGAGTGAAGTGGAGGGGAGACTCGGCTCTCTCTGATGGCAAGACTCAAAATGTATACAAATATACACGACATGACCTAAAATTTAACCACAATTTTGCACTAGGCTCAATATAACTTTATACAATGCTCTATATATGTCTGTTTTTTGATATGAATTCTTTATGAACAATCATGTGTATTGTATGTGTCATTGGCAGGTGGATTTGGTTGGAGGATACTACGACGCGGGTGATAATGTGAAGTTTGGTTGGCCGATGTCTTTTACGGTGAGCTTGTTGAGTTGGACTGCTGTTGAATATGAAAGTGAGATTTCTTCGGTGAACCAGCTTGATTATCTTCGCAGTGCTATTCGTTGGGGTGCAGATTTCATACTTAAAGCTCACACTTCACCAACCACGCTCTTTACACAGGTGTGATTCTATATATCCTATGATAATGTATACATTTTAGATAATATAATGTACACATAATGTGTGTGTGATTTGTGTTGCATGTTGATTAGTTCTATAATCAAATATCGTTGTGATTGCTAGGTGGGAGATGGAAACGCAGATCATAATTGTTGGGAGCGTCCAGAAGACATGGATACACCAAGAACAACTTACAAGATTGATTCGAATTCCCCTGGAACTGAGGCTGCAGCTGAGGCTGCTGCCGCTCTTTCTGCTGCTTCAATTGTCTTTAAGAAAACAGATATCAATTATTCATCCAAGCTATTAAGCCAGTCAAAATCTGTAAGCAATTCAAGGAACATGTTTTATTCTCATTCATGAATCATGATGATCAATTGGCTCTATAATCCATTGATCAAGAGCTAATATTTCCATTTTGATTTTATATAATTAAACTTAAGGCCATTCAAAAAAAAAAAATATAATTAAACTTAAGAAACAAGTGAAATTTGCATTAGAGTGTTTATGTATTTAATTTAACAAAATTTACTAATAATTAAATATGTTTTGCAGTTGTTTGATTTTGCTGACAAATATAGAGGTTCTTACTCGGGTTCTTGCCCATTTTACTGCTCGTACTCTGGTTATCAGGTAAGAAATTACCTCTTGTAAAAAATAAAACATTTAAAGACTAATAATTATTTTTTCATAGATCATTCATTTATGGTTGTTATTTTAAATTGTGTATGAAAAGGATGAACTATTATGGGCTGCTTCTTGGCTATACAAGGCTAGTGGGGAAAGCAAGTACTTGACGTACATCACAAGTAACCAAGGTTGGAGTCAAGCAGTGTCTGAATTCAGCTGGGATAACAAATTTGTTGGAGCTCAAACATTACTAACACAGGTATTTACATTTATAGCTAATTACCATTAATTACCATATAGCCAAACTGTATTCTTTTAGTAAACATTAGTTCAAAGGAAAAAACTTAACTCATTAATTCTAATTGTTTTTCTTTCTTCTTTTCTCAAGGAATTCTATGGCGGGAAGAAGGAGTTAGCCAAGATTAAGACTGATGGTGAATCATTTATATGTGCATTGATGCCAGGAAGTAGCTCTCTACAGATTAGAACAACTCCAGGTATATATGTAATGATTGCAAAGTAATATTACATATAACACAAATAGTCAATCTTATTTCAATCAACGTACATATGATGGAATGAGCTCAGTTAGTGTATTATTTTGTTGTTAACTCAGGTGGGCTTCTGTATATTAGAGATAGTAGTAATTTTCAATATACCACAACCTCAACCATGGTGCTATTCATTTTCTCCAAAATCTTAAATAAAAATCATATTGATGGAATTCAGTGTGGCTCTGCCCATTTCTCCCCCTCTGAAATTAGAGCCTTTGCAAAATCACAGGTATATATACTAATCTGGTTTTGCTTCTAAAATATCAAACTCATTGGTGCATAACTAAAACTTGAATGTGACATTACATAGGTGGACTACATATTAGGAAACAATCCCATGAAGATGTCATACATGGTGGGATATGGGAGTAAATATCCAAAACAATTACATCACAGAGGTTCTTCCATCCCTTCAATCATATCTCAACCTGCCAAAGTGGGGTGCAATGATGGCCAGAACTATTTCTCTTCATCTAATCCAAATCCTAATATTCATGTGGGTGCTATTGTTGGAGGACCAAATTCTAATGACCAATACAATGATGCAAGATCTGATTACTCTCATGCAGAACCTACCACCTATTCGAATGCTGCTTTTGTTGGTTCTGTTGCAGCTTTGCTTGGTGAAACTAACACCGAGACTCTTCAATTTTCTTGAATTGGTCATGCCAAGGCTAAGGAAACTGATTAGTACTTCATAGCTGATTGCTAATAATTTATCTCCTCCATATATATGTTAAGAAAGTCTTACGTCTGAAGTTATTACAAGCGAACTAGTTAAATAATTTGTAAGGAACGTTAAGTTCATACTTCAAAGGACTTTATTATTGTCGTTATTATAAGTTAAAATCTCACTTCTATTCTGAGTTGTTATTACATGCTCTTATAAAATGAAATCACAGGAGTCGTGTTCTTATATCAATGAGCTCATATGTTTACTTGTGGAAAAGGGAATCTGGATACTGATTATTGCAAAGATTAATTAATTTTGAAATTTATAAACTTAAATAAAATAAGTCTTTAATGAGACTTTTGAAAAGAAAAATAAAATATTTAAGCCACTAGAATTGTTAGAGTGATACGAGATTTGCGTTGCATGTATATGATCTTGGTTAAAATCCCATTGCCTACTACATTGTACATAAAAATTCAAACATTTAAAGACCTGAAGTTGAACTTTTGACAATGTGGTTCATTAATCATTTCTAATCATCCGGACTATGTATGTATGATTAAGTTTGCTATAATCCATTTGAAAAATATGTGATGAACACCCAAACCCCCCAACAATATAATGAGAGAATCTCAAAAAAAAAAATATAAAGAGAGAGAAATAGAGAAAGTGATGTGATAGATGTGATATGTTAGCGATGAGATAAAAAAAGAGATAAAGAATAAATAAATAAGATGTTGAAACATTTGTCAAATTACTTGTTAAAACATGTTCTTAAAAAAAAATTAAGTTGGTTAACAAATCATCCTAGACTTTCAAAAAAGTTAGACTCAAATCTAAACTTTTTGGGACTAAGTCAAACTTAAATCTTACAAAACCTAATTCAACCTATAGTATTTTCTGCCCTTATTGTGAGTTTGGTCTTGGATGGATGTAGGGCTAGGTCCCATTTTTCGTATCAGATCATTGAATCTATCTACACCTGCAATGCTTAATTCTGTTAAAAAATGTAATTAAATCAATCGAGTAAATGATTATTAGTACTCATTCAACTGACAAAAATTAACAATATAAAATGATTTTATCATATGTGTGATTTTCCAATGACTCTTATCATTTTATATATCAACAATATAAAATGATTAATCCAATTCATAATAAAAATTGTTGTTAATTCAACTTCGTAATTATTTTCAACATGTTCTAAACTAATCATGTATTTAACTGAATTAAACATAATTTTAGATTTAATTAACCACAAGTTAAATGTATAAAGAAAATTGGGTATCCATTAAAAACATTTAATGTGGATGATTTAAATATATACTCCATATTTTTTGGTAGATGTATGATTTAAATTTAAACCTTTGACTAAAATACAAATTCAGTGTACACAAAAGATTAACAGAATATACCAATTCTGTGCCGCTCAAATAAAACCATATGATAGTGTCTGAAAACTGAAATTCACACCATTTTTTCACAACAGTAATCTCCTTAACTTCAACAACCAACCAACCAACCATGTCTTCATCTTCTCTAACAGCATCTTCTTACTCCTTCCCATTCACAGCATCCCTCAAATCTTCTCACCCAATTCCATTCTCTTGTTCTTTTCCTCTCAAACACCATACCCTTCATCTCAAATCATCACCATCACTGTTTGTTTCACCTTCAGGAGCTGCAACACCCACAACCTCAATTGAAATCGACAAATCCCCAATCTCAGCTACTCCTTCAAAGGTTCTTCCTTTTCGGGTTGGCCATGGTTTTGACCTTCATCGATTGGAACCTGGTTATCCTTTAATTATTGGTGGAATTAATATACCTCATGATAGAGGTTGCGAGGCTCATTCTGATGGTATTCATTCTATTTAACCATGCCCCTTTTCATTTTTATAATCTTTTTTACATTTCTCCGAGTTAATAGTCATTTTGATTCTTAAATGTGTGAGACACTGTCACAATTGTTCTTCAATGTATAAAGATTTCAACAACATACATAAATTTGTCTTTTTTGTTAGTTAGTTAGTTAGTGAATATTTTCTGGTCGTCAATTTAGTTCATAAAATTATTAACGAAAGATACACTCTATGCTCTTTTTGTAATTTCGAAATATTTAGGGACTATGACTCTGTTTGGTAGAAAGTAGTGGATAGTGGATAAGTTAGTTGATAGTGGATGGACTTATAGCAGATAAGCTAGCTGATAGTGGATAAACTAGTGAATTAAATTTGTAGTGTTTTGAAAATTATACGGTATAAGCTATCCATTGTAAGTTTGTGATTAGGGGCCATTTGTTTGGATTGGCTTATTTACTATGAAACACGGACACTCCACAAATTAGGTGTGTTCCGTTGTCGGACACGCTTCGCTTCCTACACTGGCACATATGATTACACTAAATTATGTCATTTTCTCAAAATTATTATCGACATCGGTGTCATGTCCCGTGTCCGTGTCTATGTTTGTGCTTCATAGCTTATTTTTTAGCTTATGAAAAATAGTTTATGCAAATAAATAAGTTGTTATGTTAATTCATAAGTTCTCACTAACGAAAATTGTATTTTCATAAGCCGTTTTCTCATAAACTATCTTGACGAGCTTATGAATAATACATAAAAGCTTATTTATTTTCATAAGCTGTTCTGGATAAGCTAAAAAATAAGCCAATCCAAATGGGCCCAAGATCTTGCCAACAACTCTATACCAAATTGAGTATTTACTCAATTTTTTCATTTTTTTTCTGAGTTTGAACATGATGATGAAATATGAACAGGGGATGTTCTGCTTCACTGCGTGGTTGATGCAATTTTAGGGGCTTTAGGTCTTCCTGATATAGGACAGATTTTTCCTGATTCTGATCCTAAGTGGAAGGGTTGTGATTCTTCGGTGTTTGTCCATGAATCTGTGAGTATATTCTACATAAATATCTTCCTTCTACTTTATTTTCTCAATTGAAATACAGTATGATTTAGGCCCTAGTGTAATTGTGTTTTCAGTTTTTCTAATGTTGTTTGAATTTAGGGAATATATTAATAGGTTACCAAATGTTCACCGTAATGATTTGTTTGTTCTGTCACAAATTGTAATTCCATTTCAATGAATTATTCATGGACACATTGCATATTGCTTTCAAGTTATTATTATGCAGTGTTAGAACTTAAATGGTTGCTAAAGTATAAGCATGATAGGAAGGTATGCCTTGCAATCAGGGACAGTGGAATGGAAAGACATTGTCATTGTTCGGATTGTTAGAATAAGATGGAATGAAATGAGATATCAAATGCATTCCATCTGCTACATCTATTTTTCATTCTTCTAATTTAGGGTGCATGGATGAAATGACATGACTTTATTATTGAACGAGTTTGGTACGTACGAGTTTAAGAAATCATGAAATTATTACTGAGTTAAAAGGGTAAGGACTTAGAAGAGATTAGCGCTTTGGTTAACAGTGGAAATAATGACATGAGTTAACAGGCTACTGATTAGCTTGATGAGCAGAAAAGCAGACTGTTCATGTACCAATCATATACCTTGTATGTATATAAGGGAATCAGCTGTGTTCAGTTTTTTTAAAGGGGACGGGAGAAGAGAGGAAGGAGAGCAAAATCTCGCATAATACTATAACATTATAAATAGACTAAATTAACCTTAAATACCACACGAAATGTTAAAATGGTGTAAAATCTAAATTTGTATGTTCTTTTCATTAAAATTACTCATATCTCCGTATTATACCAAACAAAAAAGAGAGATGTTTTTATTCCCCTCAGTTAGAACCGAATAGACCTGTAGAGGCGGGTATGCATACCAGCTCGCACCAGTCAGCATAGGCCCATATTTAAACTGATTGGTTTGCATAATCCCTTATTTAAACAGGCATATATTTAAGAAGTTCGCATACATATGTGAGTTCAAAAGGCCGGTCTGCCTACTAATGTGCATGTTTTACTTTTCCTTGTAAAAAATTTTTTGGGTAATTTTCACTTGAAAAGTAACTTAAAAATTGTTTTTCTTTTTTATGTAGATATATGGGTTGATTTGCAAAGTTGTTCATCAAACCCATTTAATCCGGTGTCACAAACTAACATACATAGGATCACAAGGTCAGCTATTTAACTGGGCACAAATTTACATCTCCCAAACAACCGTTAGCCCTTGTACTCACCTCAACATACACACATGATACACCTCAAATATGTCATTTCCGAAGAAAAAGCTTTTATTCACTCTACAGACAGTTAGCATGTGAAGTGTGACTTCCTATTTTAAACAATTCAGATACAATTCACATCTGAAAAATGAGTAATTATTCTAACAAGCTCTATCAATTTAAGCTGATACAGACCAAAAAGTAGAGAATGAGTTCAAGGATATTACAGTAAGAAAAAATTACCTAACAGTATTCAGAAGTGAGATTGTGCTCTATCAGTCAAGTGTGTAACAGGGTAATTGATAATGTCTCTTAACCAAACAAAACTTTGCTATTTTTTTTTTTTTTAGTTAAATTTTTTGCTAGTTATTGAATAAGTAAACTGTGACCTAACAGTGACTCCTCTTTTATTGTATTAATTTTGGACCCTGCATTTACCATGTGTTTAGCAGTTATTAAACAACATTTTCTGTGATTTTCTTTTGACGTATGATGGTTGTACAAATTATATTTGGTTACTGAAAGTGTTTTCTTAGGATTATGATTAAAGATAACGCTGTATCTATACTTGATTTTTTTAGGGTATTTTATAATATGTTATGATTTTATTACAGGTCAGACTTATGCATGAGGCAGGTTATGATATTGGAAATTTAGATGCAACATTGATACTTCAGAGGCCGAAACTAAGCCCACACAAGGATGCTATCAAGGCCAACTTATCTGCACTGCTTGGAGTTGACGCTTCTGTGGTAAATATAAAGGCAAAAACTCATGAAAAGGTTGATAGCCTTGGAGAAAATAGAAGTATAGCAGCTCACACAGTTGTTCTTCTAATGAAGAAATGA

Protein sequence

>MS.gene024647.t1

MGKWNGLLAIMDDEFINTNSSANYDYADALDKAIMFFEGQRSGKLPKDQRVKWRGDSALSDGKTQNVDLVGGYYDAGDNVKFGWPMSFTVSLLSWTAVEYESEISSVNQLDYLRSAIRWGADFILKAHTSPTTLFTQVGDGNADHNCWERPEDMDTPRTTYKIDSNSPGTEAAAEAAAALSAASIVFKKTDINYSSKLLSQSKSLFDFADKYRGSYSGSCPFYCSYSGYQDELLWAASWLYKASGESKYLTYITSNQGWSQAVSEFSWDNKFVGAQTLLTQEFYGGKKELAKIKTDGESFICALMPGSSSLQIRTTPGGLLYIRDSSNFQYTTTSTMVLFIFSKILNKNHIDGIQCGSAHFSPSEIRAFAKSQVDYILGNNPMKMSYMVGYGSKYPKQLHHRGSSIPSIISQPAKVGCNDGQNYFSSSNPNPNIHVGAIVGGPNSNDQYNDARSDYSHAEPTTYSNAAFVGSVAALLGAATPTTSIEIDKSPISATPSKVLPFRVGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGCDSSVFVHESVRLMHEAGYDIGNLDATLILQRPKLSPHKDAIKANLSALLGVDASVVNIKAKTHEKVDSLGENRSIAAHTVVLLMKK