AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene69412

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene69412.t1 MTR_3g113720 99.622 529 2 0 1 529 1 529 0.0 1095
MS.gene69412.t1 MTR_8g075990 62.330 515 191 1 14 528 23 534 0.0 638
MS.gene69412.t1 MTR_5g085730 44.798 471 246 9 58 519 32 497 6.59e-138 409
MS.gene69412.t1 MTR_8g099410 46.482 469 237 10 58 518 29 491 8.68e-137 406
MS.gene69412.t1 MTR_4g074960 43.579 475 249 7 58 521 29 495 5.26e-136 407
MS.gene69412.t1 MTR_8g099410 46.482 469 237 10 58 518 29 491 2.81e-135 406
MS.gene69412.t1 MTR_5g093590 44.304 474 243 10 58 518 35 500 7.75e-132 393
MS.gene69412.t1 MTR_3g080190 43.524 471 252 9 58 519 41 506 7.86e-130 389
MS.gene69412.t1 MTR_5g009970 42.521 468 248 6 58 519 42 494 1.58e-128 384
MS.gene69412.t1 MTR_1g037340 44.563 469 239 10 58 518 26 481 1.40e-126 379
MS.gene69412.t1 MTR_5g010000 43.644 472 245 7 58 523 41 497 6.79e-125 375
MS.gene69412.t1 MTR_3g105230 41.850 454 242 7 58 506 31 467 1.15e-123 371
MS.gene69412.t1 MTR_3g117500 42.827 474 250 9 56 519 23 485 3.21e-122 368
MS.gene69412.t1 MTR_3g080810 42.004 469 253 8 56 516 34 491 1.00e-121 367
MS.gene69412.t1 MTR_3g023740 41.453 468 252 7 58 520 31 481 1.15e-118 358
MS.gene69412.t1 MTR_2g028480 41.698 530 267 14 14 518 77 589 3.78e-114 351
MS.gene69412.t1 MTR_4g035955 40.977 471 255 9 53 516 10 464 1.21e-113 345
MS.gene69412.t1 MTR_5g009970 41.452 427 230 5 98 519 9 420 3.14e-113 342
MS.gene69412.t1 MTR_8g104820 41.300 477 247 11 56 516 29 488 3.97e-113 345
MS.gene69412.t1 MTR_3g010330 41.880 468 248 10 58 516 26 478 5.67e-112 341
MS.gene69412.t1 MTR_4g035930 40.343 466 255 8 58 516 16 465 2.79e-110 336
MS.gene69412.t1 MTR_3g082440 39.212 533 285 15 14 524 82 597 6.79e-106 330
MS.gene69412.t1 MTR_5g009970 40.686 408 222 5 117 519 1 393 2.49e-104 318
MS.gene69412.t1 MTR_1g088190 38.923 483 257 10 51 525 33 485 4.53e-103 318
MS.gene69412.t1 MTR_4g035975 38.703 478 260 12 56 516 26 487 1.42e-101 315
MS.gene69412.t1 MTR_3g090540 36.981 530 282 18 18 519 76 581 3.77e-95 301
MS.gene69412.t1 MTR_5g009970 40.476 336 180 5 189 519 5 325 2.29e-79 252
MS.gene69412.t1 MTR_1g088190 39.557 316 158 8 51 362 33 319 1.06e-58 198
MS.gene69412.t1 MTR_1g037320 45.912 159 86 0 117 275 1 159 6.44e-38 141
MS.gene69412.t1 MTR_1g037320 45.082 122 61 3 400 516 169 289 1.82e-27 112
MS.gene69412.t1 MTR_4g128810 44.586 157 86 1 373 528 187 343 6.77e-37 140
MS.gene69412.t1 MTR_7g108925 37.576 165 98 2 366 526 43 206 2.20e-34 129
MS.gene69412.t1 MTR_0393s0050 38.931 131 74 3 375 500 29 158 7.86e-23 96.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene69412.t1 AT1G19940 68.371 528 154 4 1 528 1 515 0.0 709
MS.gene69412.t1 AT1G19940 68.371 528 154 4 1 528 1 515 0.0 709
MS.gene69412.t1 AT1G75680 69.187 529 157 5 1 528 1 524 0.0 708
MS.gene69412.t1 AT1G19940 65.952 420 130 4 1 420 1 407 0.0 546
MS.gene69412.t1 AT4G11050 45.798 476 244 9 58 525 27 496 1.60e-139 414
MS.gene69412.t1 AT4G11050 46.008 476 243 10 58 525 27 496 9.61e-139 415
MS.gene69412.t1 AT4G11050 46.008 476 243 10 58 525 27 496 1.07e-138 415
MS.gene69412.t1 AT1G64390 44.676 479 251 9 58 528 26 498 1.49e-136 409
MS.gene69412.t1 AT2G32990 43.644 472 244 10 58 516 40 502 3.69e-131 392
MS.gene69412.t1 AT2G44540 44.397 473 247 7 52 518 28 490 1.65e-128 384
MS.gene69412.t1 AT2G44550 45.435 471 238 9 53 516 29 487 2.93e-128 383
MS.gene69412.t1 AT2G44560 45.032 473 244 8 52 518 28 490 4.58e-126 378
MS.gene69412.t1 AT1G48930 46.055 469 235 7 58 516 31 491 3.91e-125 380
MS.gene69412.t1 AT2G44570 42.887 471 252 9 55 518 31 491 3.72e-122 368
MS.gene69412.t1 AT4G23560 42.463 471 251 6 57 522 23 478 2.12e-119 360
MS.gene69412.t1 AT1G71380 42.706 473 248 9 52 516 19 476 1.11e-118 358
MS.gene69412.t1 AT4G02290 41.667 468 255 9 56 516 51 507 1.11e-118 360
MS.gene69412.t1 AT1G02800 41.983 474 255 10 55 521 41 501 6.09e-118 357
MS.gene69412.t1 AT3G43860 41.845 466 249 7 58 518 35 483 3.02e-117 355
MS.gene69412.t1 AT3G43860 41.845 466 249 7 58 518 35 483 3.02e-117 355
MS.gene69412.t1 AT1G22880 42.616 474 249 9 58 523 25 483 5.03e-117 354
MS.gene69412.t1 AT4G09740 42.340 470 251 7 58 522 24 478 6.64e-117 353
MS.gene69412.t1 AT4G39010 40.764 471 259 9 56 516 28 488 6.45e-115 349
MS.gene69412.t1 AT1G23210 40.000 470 254 9 58 515 29 482 5.71e-114 347
MS.gene69412.t1 AT1G70710 40.127 471 252 9 58 515 29 482 6.54e-114 347
MS.gene69412.t1 AT4G39000 39.496 476 268 9 51 516 19 484 5.85e-111 339
MS.gene69412.t1 AT5G49720 40.566 530 273 14 14 518 74 586 3.71e-108 336
MS.gene69412.t1 AT4G24260 43.149 489 244 14 58 522 109 587 9.34e-105 327
MS.gene69412.t1 AT4G38990 37.654 486 268 12 51 516 17 487 1.87e-100 312
MS.gene69412.t1 AT1G65610 36.484 529 298 13 14 521 82 593 3.10e-100 315
MS.gene69412.t1 AT1G22880 41.546 414 220 8 117 523 1 399 3.54e-99 305
MS.gene69412.t1 AT4G02290 40.148 406 226 8 117 516 1 395 1.39e-95 296
MS.gene69412.t1 AT2G44570 41.514 383 212 7 55 435 31 403 6.39e-89 279
MS.gene69412.t1 AT4G39010 39.516 372 209 8 56 421 28 389 8.75e-83 263
MS.gene69412.t1 AT1G22880 44.728 313 155 7 58 366 25 323 8.63e-71 230
MS.gene69412.t1 AT4G24260 42.119 387 193 13 58 420 109 488 7.89e-70 232
MS.gene69412.t1 AT4G24260 44.164 317 150 11 58 352 109 420 1.63e-63 214
MS.gene69412.t1 AT4G38990 36.311 347 183 7 51 392 17 330 1.44e-59 201

Find 123 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTATTGCGTTTGTGATTC+TGG 0.168400 3.3:-93119079 MS.gene69412:CDS
TATTATAACTCAACTGGATA+TGG 0.212670 3.3:-93117881 MS.gene69412:CDS
TTTATATAGATGGTCTGATA+TGG 0.236900 3.3:-93116678 MS.gene69412:intron
GAGCATAGTCTTCTCCATTT+TGG 0.237012 3.3:+93117783 None:intergenic
ATGAGACTTACATTGATTCT+AGG 0.242483 3.3:-93115905 MS.gene69412:CDS
CTTTCAAGTTCATATGGTTC+TGG 0.277266 3.3:-93117111 MS.gene69412:CDS
GGAGAAGACTATGCTCAATT+TGG 0.277714 3.3:-93117776 MS.gene69412:CDS
GGAGAATGTTCTGTATATTC+AGG 0.309453 3.3:-93118290 MS.gene69412:intron
TCGTGGGCAATTCTAGAATA+TGG 0.312428 3.3:-93118400 MS.gene69412:CDS
AGCAATGGCATCAGCATCTT+TGG 0.319777 3.3:-93118023 MS.gene69412:CDS
GGAGGACCGGGAACCGGTTC+GGG 0.321906 3.3:+93118991 None:intergenic
TTTGTGGCTGTTGGAGAGTC+TGG 0.335910 3.3:+93117039 None:intergenic
GAGAGGGGATTCGGCTCTTA+AGG 0.338315 3.3:-93118521 MS.gene69412:CDS
CAGTATGTGACTGGCCAAAA+TGG 0.350134 3.3:-93117797 MS.gene69412:CDS
GATAAACCCGAACCGGTTCC+CGG 0.365719 3.3:-93118997 MS.gene69412:CDS
TTATAATATGTCGCAACTTC+AGG 0.368599 3.3:+93117896 None:intergenic
TGTCCCAACTGAACCAGGTT+GGG 0.383206 3.3:+93117750 None:intergenic
AGGAGGACCGGGAACCGGTT+CGG 0.385546 3.3:+93118990 None:intergenic
ATTATAACTCAACTGGATAT+GGG 0.400764 3.3:-93117880 MS.gene69412:CDS
AAGGGCCTTTCAAGTTCATA+TGG 0.416309 3.3:-93117117 MS.gene69412:CDS
TCCCACAATTTGTGCATCAC+AGG 0.417030 3.3:-93116046 MS.gene69412:CDS
TCTCGTCAATGCTCATCCTT+CGG 0.427984 3.3:-93118311 MS.gene69412:CDS
AATAAGTTGGAGAGGGGATT+CGG 0.430660 3.3:-93118530 MS.gene69412:CDS
AATGGATGCTGTTGGCCAAT+TGG 0.431030 3.3:-93118371 MS.gene69412:CDS
TTCCAGGCTGATTACGTGTT+GGG 0.431458 3.3:-93116116 MS.gene69412:intron
TTCAGCTGCAACATCTGATC+CGG 0.435202 3.3:+93118054 None:intergenic
ATCAATGGCACCAGGAGGAC+CGG 0.439759 3.3:+93118978 None:intergenic
GCGACATATTATAACTCAAC+TGG 0.441782 3.3:-93117887 MS.gene69412:CDS
CCGAATCCCAATGTAGCTAC+TGG 0.444550 3.3:-93115954 MS.gene69412:CDS
GTTGCAAGGATGGGTGGCAG+TGG 0.446186 3.3:-93115992 MS.gene69412:CDS
TCTAGAATATGGAGATCAAA+TGG 0.446875 3.3:-93118389 MS.gene69412:CDS
ATCTAGAGTAAGCTTCTTCA+AGG 0.446995 3.3:-93117142 MS.gene69412:CDS
AGCTGAAACTGCAGCAGCAA+TGG 0.448020 3.3:-93118038 MS.gene69412:CDS
AAGTTTAGTCACCACATCTT+CGG 0.449573 3.3:-93115820 MS.gene69412:CDS
GCACCAGGAGGACCGGGAAC+CGG 0.455702 3.3:+93118985 None:intergenic
TCGAGACTTTGCCAGATCTC+AGG 0.456961 3.3:-93116524 MS.gene69412:intron
TTATATAGATGGTCTGATAT+GGG 0.457104 3.3:-93116677 MS.gene69412:intron
GCCGGGGATCACATGAAGTT+CGG 0.460323 3.3:-93118454 MS.gene69412:CDS
AGTTGGGACAACAAGCTTGC+CGG 0.460646 3.3:-93117737 MS.gene69412:CDS
CAACACTTGTGATCTGCAAC+AGG 0.466398 3.3:+93118136 None:intergenic
AATCTTGTGCTGGTTCCAAT+TGG 0.470000 3.3:+93118356 None:intergenic
TAGAGAACAACAAAATAAGT+TGG 0.470544 3.3:-93118543 MS.gene69412:CDS
CCAGTAGCTACATTGGGATT+CGG 0.470664 3.3:+93115954 None:intergenic
CCCTGTGATGCACAAATTGT+GGG 0.472083 3.3:+93116045 None:intergenic
CTCAATTTGGAAGCCCAACC+TGG 0.472205 3.3:-93117763 MS.gene69412:CDS
GTCTGATATGGGTGAGTGAA+TGG 0.473028 3.3:-93116666 MS.gene69412:CDS
GCTAAGAATGCAGATGCAAC+AGG 0.473355 3.3:+93116628 None:intergenic
CTTGTTGTCCCAACTGAACC+AGG 0.475271 3.3:+93117745 None:intergenic
AGGATACGTTCACTTGTAAG+AGG 0.479664 3.3:+93118080 None:intergenic
CAAAAGGAGGATGTTGTGGT+TGG 0.485199 3.3:-93119101 MS.gene69412:CDS
TACTGCCTCGGTGCTATCGT+GGG 0.488542 3.3:-93118416 MS.gene69412:CDS
GAACCGGTTCCCGGTCCTCC+TGG 0.489943 3.3:-93118988 MS.gene69412:CDS
GTAGCTACTGGAGCACTTGT+TGG 0.494083 3.3:-93115942 MS.gene69412:CDS
GTAAGCTTCTTCAAGGCAAA+GGG 0.494576 3.3:-93117135 MS.gene69412:CDS
AACAACAAAATAAGTTGGAG+AGG 0.494998 3.3:-93118538 MS.gene69412:CDS
AAATTCAGATAAACCCGAAC+CGG 0.495107 3.3:-93119004 MS.gene69412:CDS
CAAAAGGAATGTATGATGCC+GGG 0.495516 3.3:-93118471 MS.gene69412:CDS
GCAGATTTAGATCTAACAAA+AGG 0.496053 3.3:-93118487 MS.gene69412:CDS
TCGAAGATCTGATGGTTTGA+AGG 0.496987 3.3:+93116543 None:intergenic
ATGAATGCATACCTGAGATC+TGG 0.498951 3.3:+93116513 None:intergenic
GAAGCCCAACCTGGTTCAGT+TGG 0.502198 3.3:-93117754 MS.gene69412:CDS
CCCACAATTTGTGCATCACA+GGG 0.503590 3.3:-93116045 MS.gene69412:CDS
GTGATTCTGGCTCTTGTGGT+CGG 0.505371 3.3:-93119066 MS.gene69412:CDS
AAGCCCAACCTGGTTCAGTT+GGG 0.506162 3.3:-93117753 MS.gene69412:CDS
ACAAAAGGAATGTATGATGC+CGG 0.506505 3.3:-93118472 MS.gene69412:CDS
TATAACAGTGCTGTCATAGT+TGG 0.509805 3.3:-93115852 MS.gene69412:CDS
TGCAACATCTGATCCGGGAC+AGG 0.511750 3.3:+93118060 None:intergenic
GCTACTGGAGCACTTGTTGG+TGG 0.515300 3.3:-93115939 MS.gene69412:CDS
ACCTGTAGCATGGTAGAGCC+AGG 0.516769 3.3:+93117835 None:intergenic
TTGTCCCAACTGAACCAGGT+TGG 0.523981 3.3:+93117749 None:intergenic
AACCAGCACAAGATTCTCTC+AGG 0.525412 3.3:-93118348 MS.gene69412:CDS
TAGTTTAAGAGAAGGATTGA+AGG 0.530086 3.3:+93115796 None:intergenic
AGCTCTTCATACCTGAGTTC+CGG 0.531252 3.3:+93117718 None:intergenic
CACCTGAGAGAATCTTGTGC+TGG 0.533013 3.3:+93118346 None:intergenic
CCCCTGTGATGCACAAATTG+TGG 0.536207 3.3:+93116044 None:intergenic
AGTGCTCCAGTAGCTACATT+GGG 0.536888 3.3:+93115948 None:intergenic
CAACAAGCTTGCCGGAACTC+AGG 0.539769 3.3:-93117729 MS.gene69412:intron
TCCTACCTTCAGTATGTGAC+TGG 0.540197 3.3:-93117806 MS.gene69412:CDS
CTTCCAGGCTGATTACGTGT+TGG 0.540229 3.3:-93116117 MS.gene69412:intron
AAGTGCTCCAGTAGCTACAT+TGG 0.543749 3.3:+93115947 None:intergenic
GCAAAGTCTCGAAGATCTGA+TGG 0.544007 3.3:+93116535 None:intergenic
TTACTGCCTCGGTGCTATCG+TGG 0.544348 3.3:-93118417 MS.gene69412:CDS
ATGTAAGTCTCATTTAAGAA+AGG 0.549620 3.3:+93115915 None:intergenic
GTTTGTGATTCTGGCTCTTG+TGG 0.550904 3.3:-93119070 MS.gene69412:CDS
AGTAAGCTTCTTCAAGGCAA+AGG 0.552883 3.3:-93117136 MS.gene69412:CDS
ACCTGGCTCTACCATGCTAC+AGG 0.553331 3.3:-93117836 MS.gene69412:CDS
CAAGTGAACGTATCCTGTCC+CGG 0.560701 3.3:-93118073 MS.gene69412:CDS
ACCGAACTTCATGTGATCCC+CGG 0.563474 3.3:+93118453 None:intergenic
GGATTGAAGGGCCGAAGATG+TGG 0.569561 3.3:+93115809 None:intergenic
CTGTTGCAGATCACAAGTGT+TGG 0.571688 3.3:-93118135 MS.gene69412:CDS
TCAATGGCACCAGGAGGACC+GGG 0.573055 3.3:+93118979 None:intergenic
ACAGCACTGTTATATGTGCT+TGG 0.573334 3.3:+93115861 None:intergenic
GGGGATTCGGCTCTTAAGGA+TGG 0.573397 3.3:-93118517 MS.gene69412:CDS
CAGAACCATATGAACTTGAA+AGG 0.573409 3.3:+93117112 None:intergenic
AGTTTAAGAGAAGGATTGAA+GGG 0.578741 3.3:+93115797 None:intergenic
TTATAACTCAACTGGATATG+GGG 0.582247 3.3:-93117879 MS.gene69412:CDS
AAGACCACACATTACAGCCT+CGG 0.582653 3.3:+93117065 None:intergenic
ACAACAAAATAAGTTGGAGA+GGG 0.586545 3.3:-93118537 MS.gene69412:CDS
AGCTACATTGGGATTCGGAT+CGG 0.590300 3.3:+93115959 None:intergenic
TCTAGGAACAATTCTATGCA+AGG 0.591369 3.3:-93115888 MS.gene69412:CDS
TCAGCTGCAACATCTGATCC+GGG 0.591508 3.3:+93118055 None:intergenic
CGTTCCTCAGTAATTAACTC+AGG 0.597205 3.3:+93118106 None:intergenic
AGATCAAAAGGAGGATGTTG+TGG 0.599433 3.3:-93119105 MS.gene69412:CDS
ACATACTATAGTTTAAGAGA+AGG 0.599511 3.3:+93115788 None:intergenic
CAGCACAAGATTCTCTCAGG+TGG 0.615600 3.3:-93118345 MS.gene69412:CDS
TTTGGCCAGTCACATACTGA+AGG 0.616951 3.3:+93117801 None:intergenic
AGGAATCATCACCTGTAGCA+TGG 0.618916 3.3:+93117825 None:intergenic
AAACTGGTTGCAAGGATGGG+TGG 0.621140 3.3:-93115998 MS.gene69412:CDS
AAAAGGAATGTATGATGCCG+GGG 0.628087 3.3:-93118470 MS.gene69412:CDS
GGATACGTTCACTTGTAAGA+GGG 0.631666 3.3:+93118081 None:intergenic
GGAGATCAAATGGATGCTGT+TGG 0.641613 3.3:-93118379 MS.gene69412:CDS
TCCGCCGAGGCTGTAATGTG+TGG 0.641659 3.3:-93117069 MS.gene69412:CDS
ACCAGAAAACTCATATGCTG+AGG 0.647665 3.3:+93116086 None:intergenic
ACCGAGGCAGTAAAAGCCAT+AGG 0.648080 3.3:+93118427 None:intergenic
CAACAAAATAAGTTGGAGAG+GGG 0.657191 3.3:-93118536 MS.gene69412:CDS
ATATACAGAACATTCTCCGA+AGG 0.657437 3.3:+93118295 None:intergenic
GCCAGTCACATACTGAAGGT+AGG 0.663540 3.3:+93117805 None:intergenic
ACCACACATTACAGCCTCGG+CGG 0.674391 3.3:+93117068 None:intergenic
GATACGTTCACTTGTAAGAG+GGG 0.676663 3.3:+93118082 None:intergenic
CCACAATTTGTGCATCACAG+GGG 0.697583 3.3:-93116044 MS.gene69412:CDS
TAGACCTGAGTTAATTACTG+AGG 0.715470 3.3:-93118110 MS.gene69412:CDS
AAATTATAGAAAATCCGCCG+AGG 0.730261 3.3:-93117082 MS.gene69412:CDS
AATTGCCCACGATAGCACCG+AGG 0.782103 3.3:+93118411 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAAAATGTATAAATAAA+GGG - chr3.3:93117477-93117496 MS.gene69412:intron 10.0%
!! TAAGAAAAATGTATAAATAA+AGG - chr3.3:93117476-93117495 MS.gene69412:intron 10.0%
!! TAGAAATATATTACTAAAAA+TGG + chr3.3:93118186-93118205 None:intergenic 10.0%
!! TATAAAAAAAAAAAACACTT+CGG + chr3.3:93117309-93117328 None:intergenic 10.0%
!! TATAAAACATTTAATGTTAT+TGG + chr3.3:93118584-93118603 None:intergenic 10.0%
!!! GAGTTTTTTTTTTTTTTTTT+TGG - chr3.3:93118498-93118517 MS.gene69412:CDS 10.0%
!! AATTAGAGTTATATTGTATT+GGG - chr3.3:93117542-93117561 MS.gene69412:intron 15.0%
!! AGAAAAATGTATAAATAAAG+GGG - chr3.3:93117478-93117497 MS.gene69412:intron 15.0%
!! ATTTATCTGACATTAAATAA+AGG - chr3.3:93118628-93118647 MS.gene69412:intron 15.0%
!! GTAAATTCTTCTTATATTAA+GGG + chr3.3:93118461-93118480 None:intergenic 15.0%
!! TAATTAGAGTTATATTGTAT+TGG - chr3.3:93117541-93117560 MS.gene69412:intron 15.0%
!! TTAATTAGTATAAAATTGAG+TGG - chr3.3:93118541-93118560 MS.gene69412:CDS 15.0%
!! TTTAGTATAAATTTACATGT+AGG + chr3.3:93118607-93118626 None:intergenic 15.0%
!! TTTATCTGACATTAAATAAA+GGG - chr3.3:93118629-93118648 MS.gene69412:intron 15.0%
!!! TTCTTTTTCTTTTATATAGA+TGG - chr3.3:93118232-93118251 MS.gene69412:intron 15.0%
!!! TTTAATGTTATTGGTTTAAT+TGG + chr3.3:93118575-93118594 None:intergenic 15.0%
!! AAAGTGGAATATATTGTATT+GGG - chr3.3:93117501-93117520 MS.gene69412:intron 20.0%
!! AGTTGTATTGAAAATTGAAA+TGG - chr3.3:93117574-93117593 MS.gene69412:intron 20.0%
!! CTAATCAGATTATAAGTTAA+GGG + chr3.3:93118111-93118130 None:intergenic 20.0%
!! GGTAAATTCTTCTTATATTA+AGG + chr3.3:93118462-93118481 None:intergenic 20.0%
!!! AAAACAGTTATTTACTTTTG+CGG - chr3.3:93116969-93116988 MS.gene69412:intron 20.0%
!!! AATAAGTAGAAGTATCATTT+AGG + chr3.3:93117402-93117421 None:intergenic 20.0%
!!! AATAGTTTTATTAGATAGTC+TGG - chr3.3:93118138-93118157 MS.gene69412:CDS 20.0%
!!! ATATTCCTTTTTTTCATTCT+CGG - chr3.3:93116023-93116042 MS.gene69412:CDS 20.0%
!!! ATCTGAATCACATTTTATAT+TGG + chr3.3:93118356-93118375 None:intergenic 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG - chr3.3:93117611-93117630 MS.gene69412:intron 20.0%
!!! TCTGAATCACATTTTATATT+GGG + chr3.3:93118355-93118374 None:intergenic 20.0%
! AAATTTGTGTATTCAATGCA+TGG - chr3.3:93118000-93118019 MS.gene69412:CDS 25.0%
! AATGCTTTCATGTATATACT+AGG - chr3.3:93117670-93117689 MS.gene69412:intron 25.0%
! AATTTGTGTATTCAATGCAT+GGG - chr3.3:93118001-93118020 MS.gene69412:CDS 25.0%
! ACGCACAATTTCTTATAAAA+GGG - chr3.3:93118723-93118742 MS.gene69412:intron 25.0%
! ATGCTTTCATGTATATACTA+GGG - chr3.3:93117671-93117690 MS.gene69412:intron 25.0%
! ATGTAAGTCTCATTTAAGAA+AGG + chr3.3:93119008-93119027 None:intergenic 25.0%
! ATTATAACTCAACTGGATAT+GGG - chr3.3:93117040-93117059 MS.gene69412:CDS 25.0%
! GAAAGTGGAATATATTGTAT+TGG - chr3.3:93117500-93117519 MS.gene69412:intron 25.0%
! GCTAATCAGATTATAAGTTA+AGG + chr3.3:93118112-93118131 None:intergenic 25.0%
! TACGCACAATTTCTTATAAA+AGG - chr3.3:93118722-93118741 MS.gene69412:intron 25.0%
! TAGAATTTGGAAACAAGATT+CGG + chr3.3:93117229-93117248 None:intergenic 25.0%
! TAGAGAACAACAAAATAAGT+TGG - chr3.3:93116377-93116396 MS.gene69412:intron 25.0%
! TATTATAACTCAACTGGATA+TGG - chr3.3:93117039-93117058 MS.gene69412:CDS 25.0%
! TTATATAGATGGTCTGATAT+GGG - chr3.3:93118243-93118262 MS.gene69412:intron 25.0%
! TTCATTTATCAAAATCGATG+TGG - chr3.3:93116749-93116768 MS.gene69412:intron 25.0%
! TTGTGAAATGCAAGAAATAA+AGG + chr3.3:93116052-93116071 None:intergenic 25.0%
! TTTATATAGATGGTCTGATA+TGG - chr3.3:93118242-93118261 MS.gene69412:intron 25.0%
!! AATGATCGTAGTTTAGAATT+TGG + chr3.3:93117242-93117261 None:intergenic 25.0%
!! CTGACTTGATATTAACTAAT+GGG - chr3.3:93117941-93117960 MS.gene69412:CDS 25.0%
!! TCTGACTTGATATTAACTAA+TGG - chr3.3:93117940-93117959 MS.gene69412:CDS 25.0%
!!! AAGAAATTGTGCGTATTTTT+TGG + chr3.3:93118717-93118736 None:intergenic 25.0%
!!! AGAAGCATATTTTTGATCAA+TGG + chr3.3:93115960-93115979 None:intergenic 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG - chr3.3:93117610-93117629 MS.gene69412:intron 25.0%
!!! TAATGTTTTAAAAACCGAAC+TGG - chr3.3:93116143-93116162 MS.gene69412:intron 25.0%
!!! TGGTTTTGAAAACATTGTTT+TGG - chr3.3:93116282-93116301 MS.gene69412:intron 25.0%
AAAACTTGTCTAATACTTCC+AGG - chr3.3:93118788-93118807 MS.gene69412:intron 30.0%
AGAGAAAAATCGAGATCAAA+AGG - chr3.3:93115803-93115822 MS.gene69412:CDS 30.0%
AGTAAGTAGATGTAACATCT+AGG + chr3.3:93117712-93117731 None:intergenic 30.0%
ATAATCCTTCTTCTTAATGC+AGG - chr3.3:93117748-93117767 MS.gene69412:CDS 30.0%
ATTAAATAAGCTCCTTGATC+TGG + chr3.3:93118526-93118545 None:intergenic 30.0%
ATTTCTTGCATTTCACAATG+TGG - chr3.3:93116054-93116073 MS.gene69412:CDS 30.0%
GCAGATTTAGATCTAACAAA+AGG - chr3.3:93116433-93116452 MS.gene69412:intron 30.0%
GTCTATTCTATGTAATGTGT+AGG + chr3.3:93117351-93117370 None:intergenic 30.0%
TAGGATAAGATAATGCCATA+AGG + chr3.3:93117383-93117402 None:intergenic 30.0%
TGCTTTCATGTATATACTAG+GGG - chr3.3:93117672-93117691 MS.gene69412:intron 30.0%
TGTATAAATAAAGGGGAAAG+TGG - chr3.3:93117485-93117504 MS.gene69412:intron 30.0%
TTATAACTCAACTGGATATG+GGG - chr3.3:93117041-93117060 MS.gene69412:CDS 30.0%
TTATAATATGTCGCAACTTC+AGG + chr3.3:93117027-93117046 None:intergenic 30.0%
TTTACCAAAATCACAGATCA+AGG - chr3.3:93118476-93118495 MS.gene69412:CDS 30.0%
! AACAACAAAATAAGTTGGAG+AGG - chr3.3:93116382-93116401 MS.gene69412:intron 30.0%
! ACAACAAAATAAGTTGGAGA+GGG - chr3.3:93116383-93116402 MS.gene69412:intron 30.0%
! CGGATTTTCTATAATTTTGG+AGG + chr3.3:93117835-93117854 None:intergenic 30.0%
! TCTAGAATATGGAGATCAAA+TGG - chr3.3:93116531-93116550 MS.gene69412:CDS 30.0%
! TTCTGTATATTCAGGTTAGT+TGG - chr3.3:93116638-93116657 MS.gene69412:CDS 30.0%
! TTGAAATGGCTCAGTTATTT+TGG - chr3.3:93117588-93117607 MS.gene69412:intron 30.0%
! TTTTAAGCCGATACTATCTT+TGG + chr3.3:93118750-93118769 None:intergenic 30.0%
! TTTTTGTAGAATACTCTCTC+TGG - chr3.3:93118435-93118454 MS.gene69412:CDS 30.0%
!! AATACTTTGGTGGGTTATTT+AGG + chr3.3:93116238-93116257 None:intergenic 30.0%
!! ATGAGACTTACATTGATTCT+AGG - chr3.3:93119015-93119034 MS.gene69412:CDS 30.0%
!! CAATGTGGTTGGTTTATTAT+AGG - chr3.3:93116069-93116088 MS.gene69412:CDS 30.0%
!! TGAAATGGCTCAGTTATTTT+GGG - chr3.3:93117589-93117608 MS.gene69412:intron 30.0%
!!! AATTTTCATAAAAAGTGCCC+CGG + chr3.3:93117985-93118004 None:intergenic 30.0%
!!! AGTTTTATTAGATAGTCTGG+AGG - chr3.3:93118141-93118160 MS.gene69412:CDS 30.0%
AAAGGGACCAAAGATAGTAT+CGG - chr3.3:93118740-93118759 MS.gene69412:intron 35.0%
AAATTATAGAAAATCCGCCG+AGG - chr3.3:93117838-93117857 MS.gene69412:CDS 35.0%
AAATTCAGATAAACCCGAAC+CGG - chr3.3:93115916-93115935 MS.gene69412:CDS 35.0%
AAGTTTAGTCACCACATCTT+CGG - chr3.3:93119100-93119119 MS.gene69412:CDS 35.0%
ACAAAAGGAATGTATGATGC+CGG - chr3.3:93116448-93116467 MS.gene69412:intron 35.0%
AGAAAATGGGTCAGATATTC+CGG - chr3.3:93117624-93117643 MS.gene69412:intron 35.0%
ATAGACTCAATCAAGCCTTA+TGG - chr3.3:93117365-93117384 MS.gene69412:intron 35.0%
ATATACAGAACATTCTCCGA+AGG + chr3.3:93116628-93116647 None:intergenic 35.0%
ATCAAGTCAGATAGCATTCA+AGG + chr3.3:93117931-93117950 None:intergenic 35.0%
ATCTGTGTGAAAAACCAAAC+TGG + chr3.3:93117456-93117475 None:intergenic 35.0%
ATGCTACGGTTCAAATACTT+TGG + chr3.3:93116251-93116270 None:intergenic 35.0%
ATTCCTGCTAATGCAAAAAC+TGG - chr3.3:93118906-93118925 MS.gene69412:intron 35.0%
CAAAACCTGCATTAAGAAGA+AGG + chr3.3:93117756-93117775 None:intergenic 35.0%
CAGAACCATATGAACTTGAA+AGG + chr3.3:93117811-93117830 None:intergenic 35.0%
CCAAATCAAATCACATGCTA+CGG + chr3.3:93116265-93116284 None:intergenic 35.0%
GAAAAATCGAGATCAAAAGG+AGG - chr3.3:93115806-93115825 MS.gene69412:CDS 35.0%
GACCATTAACCAACTAGAAT+GGG + chr3.3:93116324-93116343 None:intergenic 35.0%
GCGACATATTATAACTCAAC+TGG - chr3.3:93117033-93117052 MS.gene69412:CDS 35.0%
GGAGAATGTTCTGTATATTC+AGG - chr3.3:93116630-93116649 MS.gene69412:CDS 35.0%
GGTAACCGAGAATGAAAAAA+AGG + chr3.3:93116031-93116050 None:intergenic 35.0%
GTTTATTGCGTTTGTGATTC+TGG - chr3.3:93115841-93115860 MS.gene69412:CDS 35.0%
TAATGCAAAAACTGGTTGCA+AGG - chr3.3:93118914-93118933 MS.gene69412:intron 35.0%
TACGGTTCAAATACTTTGGT+GGG + chr3.3:93116247-93116266 None:intergenic 35.0%
TAGACCTGAGTTAATTACTG+AGG - chr3.3:93116810-93116829 MS.gene69412:intron 35.0%
TATAACAGTGCTGTCATAGT+TGG - chr3.3:93119068-93119087 MS.gene69412:CDS 35.0%
TATTGAATCAGCAAGATCTC+TGG - chr3.3:93116167-93116186 MS.gene69412:intron 35.0%
TCTAGGAACAATTCTATGCA+AGG - chr3.3:93119032-93119051 MS.gene69412:CDS 35.0%
TGACCATTAACCAACTAGAA+TGG + chr3.3:93116325-93116344 None:intergenic 35.0%
TTTATCAAAATCGATGTGGC+AGG - chr3.3:93116753-93116772 MS.gene69412:intron 35.0%
! AACTCCTTGATCTGTGATTT+TGG + chr3.3:93118483-93118502 None:intergenic 35.0%
! ATAACTGTTTTGCATGCTTG+AGG + chr3.3:93116960-93116979 None:intergenic 35.0%
! ATCTAGAGTAAGCTTCTTCA+AGG - chr3.3:93117778-93117797 MS.gene69412:CDS 35.0%
! CAACAAAATAAGTTGGAGAG+GGG - chr3.3:93116384-93116403 MS.gene69412:intron 35.0%
!! CGGCGGATTTTCTATAATTT+TGG + chr3.3:93117838-93117857 None:intergenic 35.0%
!! CTTTCAAGTTCATATGGTTC+TGG - chr3.3:93117809-93117828 MS.gene69412:CDS 35.0%
!! TATTTTTGATCAATGGCACC+AGG + chr3.3:93115953-93115972 None:intergenic 35.0%
!! TGCTGATTCAATATCCAGTT+CGG + chr3.3:93116160-93116179 None:intergenic 35.0%
!!! ACTATCAGTTCTGCTTTTTG+TGG + chr3.3:93117900-93117919 None:intergenic 35.0%
!!! ATTTTCATAAAAAGTGCCCC+GGG + chr3.3:93117984-93118003 None:intergenic 35.0%
!!! TTTTTTTTGGGTCCAGATCA+AGG - chr3.3:93118511-93118530 MS.gene69412:CDS 35.0%
AAAAGGAATGTATGATGCCG+GGG - chr3.3:93116450-93116469 MS.gene69412:intron 40.0%
ACAGCACTGTTATATGTGCT+TGG + chr3.3:93119062-93119081 None:intergenic 40.0%
ACCAGAAAACTCATATGCTG+AGG + chr3.3:93118837-93118856 None:intergenic 40.0%
AGATCAAAAGGAGGATGTTG+TGG - chr3.3:93115815-93115834 MS.gene69412:CDS 40.0%
AGGATACGTTCACTTGTAAG+AGG + chr3.3:93116843-93116862 None:intergenic 40.0%
AGTAAGCTTCTTCAAGGCAA+AGG - chr3.3:93117784-93117803 MS.gene69412:CDS 40.0%
ATGAATGCATACCTGAGATC+TGG + chr3.3:93118410-93118429 None:intergenic 40.0%
CAAAAACTGGTTGCAAGGAT+GGG - chr3.3:93118919-93118938 MS.gene69412:intron 40.0%
CAAAAGGAATGTATGATGCC+GGG - chr3.3:93116449-93116468 MS.gene69412:intron 40.0%
CCGTAGCATGTGATTTGATT+TGG - chr3.3:93116262-93116281 MS.gene69412:intron 40.0%
CGTTCCTCAGTAATTAACTC+AGG + chr3.3:93116817-93116836 None:intergenic 40.0%
CTACGGTTCAAATACTTTGG+TGG + chr3.3:93116248-93116267 None:intergenic 40.0%
CTTGCATTTCACAATGTGGT+TGG - chr3.3:93116058-93116077 MS.gene69412:CDS 40.0%
GAAAATGGGTCAGATATTCC+GGG - chr3.3:93117625-93117644 MS.gene69412:intron 40.0%
GATACGTTCACTTGTAAGAG+GGG + chr3.3:93116841-93116860 None:intergenic 40.0%
GGAGAAGACTATGCTCAATT+TGG - chr3.3:93117144-93117163 MS.gene69412:CDS 40.0%
GGATACGTTCACTTGTAAGA+GGG + chr3.3:93116842-93116861 None:intergenic 40.0%
GTAAGCTTCTTCAAGGCAAA+GGG - chr3.3:93117785-93117804 MS.gene69412:CDS 40.0%
TACTCTCGTGACACTCTTTA+AGG + chr3.3:93118075-93118094 None:intergenic 40.0%
TCGAAGATCTGATGGTTTGA+AGG + chr3.3:93118380-93118399 None:intergenic 40.0%
TGTTATTCATGTGATGCAGC+TGG - chr3.3:93116349-93116368 MS.gene69412:intron 40.0%
TTATTTAGGAGGCTCAATCG+TGG + chr3.3:93116224-93116243 None:intergenic 40.0%
! AATAAGTTGGAGAGGGGATT+CGG - chr3.3:93116390-93116409 MS.gene69412:intron 40.0%
! ATATGGGGATGAGCTTTTGT+GGG - chr3.3:93117056-93117075 MS.gene69412:CDS 40.0%
! CAAACTGGCTCAGATAAAAC+GGG + chr3.3:93117441-93117460 None:intergenic 40.0%
! CAACCAGTTTTTGCATTAGC+AGG + chr3.3:93118912-93118931 None:intergenic 40.0%
! CATGAAGTTCGGTTTTCCTA+TGG - chr3.3:93116477-93116496 MS.gene69412:intron 40.0%
! CCAAACTGGCTCAGATAAAA+CGG + chr3.3:93117442-93117461 None:intergenic 40.0%
! GAGCATAGTCTTCTCCATTT+TGG + chr3.3:93117140-93117159 None:intergenic 40.0%
! TCAGCATATGAGTTTTCTGG+TGG - chr3.3:93118836-93118855 MS.gene69412:intron 40.0%
! TCCTCAGCATATGAGTTTTC+TGG - chr3.3:93118833-93118852 MS.gene69412:intron 40.0%
! TGCCCATTCTAGTTGGTTAA+TGG - chr3.3:93116319-93116338 MS.gene69412:intron 40.0%
!! AAGGGCCTTTCAAGTTCATA+TGG - chr3.3:93117803-93117822 MS.gene69412:CDS 40.0%
!! AATCTTGTGCTGGTTCCAAT+TGG + chr3.3:93116567-93116586 None:intergenic 40.0%
!! ACTTTGGTGGGTTATTTAGG+AGG + chr3.3:93116235-93116254 None:intergenic 40.0%
!! ATGAGTTTTCTGGTGGGATA+TGG - chr3.3:93118843-93118862 MS.gene69412:intron 40.0%
!! CAGCATATGAGTTTTCTGGT+GGG - chr3.3:93118837-93118856 MS.gene69412:intron 40.0%
!! TCGTGGGCAATTCTAGAATA+TGG - chr3.3:93116520-93116539 MS.gene69412:intron 40.0%
!!! TTTTCATAAAAAGTGCCCCG+GGG + chr3.3:93117983-93118002 None:intergenic 40.0%
AACCAGCACAAGATTCTCTC+AGG - chr3.3:93116572-93116591 MS.gene69412:CDS 45.0%
AAGACCACACATTACAGCCT+CGG + chr3.3:93117858-93117877 None:intergenic 45.0%
AAGTGCTCCAGTAGCTACAT+TGG + chr3.3:93118976-93118995 None:intergenic 45.0%
AATGGATGCTGTTGGCCAAT+TGG - chr3.3:93116549-93116568 MS.gene69412:CDS 45.0%
AGCAATGGCATCAGCATCTT+TGG - chr3.3:93116897-93116916 MS.gene69412:intron 45.0%
AGCTACATTGGGATTCGGAT+CGG + chr3.3:93118964-93118983 None:intergenic 45.0%
AGCTCTTCATACCTGAGTTC+CGG + chr3.3:93117205-93117224 None:intergenic 45.0%
AGGAATCATCACCTGTAGCA+TGG + chr3.3:93117098-93117117 None:intergenic 45.0%
AGGCTCAATCGTGGTTTCAT+CGG + chr3.3:93116215-93116234 None:intergenic 45.0%
AGTGCTCCAGTAGCTACATT+GGG + chr3.3:93118975-93118994 None:intergenic 45.0%
ATCGTGGTTTCATCGGAGTT+TGG + chr3.3:93116208-93116227 None:intergenic 45.0%
ATGTTGCTGCCCATTCTAGT+TGG - chr3.3:93116312-93116331 MS.gene69412:intron 45.0%
CAAAAGGAGGATGTTGTGGT+TGG - chr3.3:93115819-93115838 MS.gene69412:CDS 45.0%
CAACACTTGTGATCTGCAAC+AGG + chr3.3:93116787-93116806 None:intergenic 45.0%
CCACAATTTGTGCATCACAG+GGG - chr3.3:93118876-93118895 MS.gene69412:intron 45.0%
CCAGTAGCTACATTGGGATT+CGG + chr3.3:93118969-93118988 None:intergenic 45.0%
CCCACAATTTGTGCATCACA+GGG - chr3.3:93118875-93118894 MS.gene69412:intron 45.0%
CCCTGTGATGCACAAATTGT+GGG + chr3.3:93118878-93118897 None:intergenic 45.0%
CTGTTGCAGATCACAAGTGT+TGG - chr3.3:93116785-93116804 MS.gene69412:intron 45.0%
GCAAAAACTGGTTGCAAGGA+TGG - chr3.3:93118918-93118937 MS.gene69412:intron 45.0%
GCAAAGTCTCGAAGATCTGA+TGG + chr3.3:93118388-93118407 None:intergenic 45.0%
GCTAAGAATGCAGATGCAAC+AGG + chr3.3:93118295-93118314 None:intergenic 45.0%
GGAGATCAAATGGATGCTGT+TGG - chr3.3:93116541-93116560 MS.gene69412:CDS 45.0%
GTCTGATATGGGTGAGTGAA+TGG - chr3.3:93118254-93118273 MS.gene69412:intron 45.0%
GTCTGGAGGAACACAAACTA+TGG - chr3.3:93118155-93118174 MS.gene69412:intron 45.0%
TCAAAATCGATGTGGCAGGT+TGG - chr3.3:93116757-93116776 MS.gene69412:intron 45.0%
TCAGCAAGATCTCTGGATCA+TGG - chr3.3:93116174-93116193 MS.gene69412:intron 45.0%
TCCCACAATTTGTGCATCAC+AGG - chr3.3:93118874-93118893 MS.gene69412:intron 45.0%
TCCTACCTTCAGTATGTGAC+TGG - chr3.3:93117114-93117133 MS.gene69412:CDS 45.0%
TCTCGTCAATGCTCATCCTT+CGG - chr3.3:93116609-93116628 MS.gene69412:CDS 45.0%
TTCAGCTGCAACATCTGATC+CGG + chr3.3:93116869-93116888 None:intergenic 45.0%
TTCCAGGCTGATTACGTGTT+GGG - chr3.3:93118804-93118823 MS.gene69412:intron 45.0%
TTTGGCCAGTCACATACTGA+AGG + chr3.3:93117122-93117141 None:intergenic 45.0%
! ACTTTTGCGGACAAGCATAG+AGG - chr3.3:93116982-93117001 MS.gene69412:intron 45.0%
! CAGTATGTGACTGGCCAAAA+TGG - chr3.3:93117123-93117142 MS.gene69412:CDS 45.0%
! CCGTTTTATCTGAGCCAGTT+TGG - chr3.3:93117439-93117458 MS.gene69412:intron 45.0%
! GATATGGGGATGAGCTTTTG+TGG - chr3.3:93117055-93117074 MS.gene69412:CDS 45.0%
! TCCTATGGCTTTTACTGCCT+CGG - chr3.3:93116492-93116511 MS.gene69412:intron 45.0%
! TTTTGATCAATGGCACCAGG+AGG + chr3.3:93115950-93115969 None:intergenic 45.0%
!! GTTTGTGATTCTGGCTCTTG+TGG - chr3.3:93115850-93115869 MS.gene69412:CDS 45.0%
!! TTTCATAAAAAGTGCCCCGG+GGG + chr3.3:93117982-93118001 None:intergenic 45.0%
!!! GTTCTGCTTTTTGTGGCTGT+TGG + chr3.3:93117893-93117912 None:intergenic 45.0%
!!! AGTTTTTTTTTTTTTTTTTT+GGG - chr3.3:93118499-93118518 MS.gene69412:CDS 5.0%
AAACTGGTTGCAAGGATGGG+TGG - chr3.3:93118922-93118941 MS.gene69412:intron 50.0%
AAATGCTAATGAGTGCCCCC+GGG - chr3.3:93117964-93117983 MS.gene69412:CDS 50.0%
AAGCCCAACCTGGTTCAGTT+GGG - chr3.3:93117167-93117186 MS.gene69412:intron 50.0%
ACCGAACTTCATGTGATCCC+CGG + chr3.3:93116470-93116489 None:intergenic 50.0%
ACCGAGGCAGTAAAAGCCAT+AGG + chr3.3:93116496-93116515 None:intergenic 50.0%
AGCTGAAACTGCAGCAGCAA+TGG - chr3.3:93116882-93116901 MS.gene69412:intron 50.0%
AGTTGGGACAACAAGCTTGC+CGG - chr3.3:93117183-93117202 MS.gene69412:intron 50.0%
ATGGGTCAGATATTCCGGGA+CGG - chr3.3:93117629-93117648 MS.gene69412:intron 50.0%
CAAGTGAACGTATCCTGTCC+CGG - chr3.3:93116847-93116866 MS.gene69412:intron 50.0%
CACCTGAGAGAATCTTGTGC+TGG + chr3.3:93116577-93116596 None:intergenic 50.0%
CAGCACAAGATTCTCTCAGG+TGG - chr3.3:93116575-93116594 MS.gene69412:CDS 50.0%
CCCCTGTGATGCACAAATTG+TGG + chr3.3:93118879-93118898 None:intergenic 50.0%
CCGAATCCCAATGTAGCTAC+TGG - chr3.3:93118966-93118985 MS.gene69412:CDS 50.0%
CTCAATTTGGAAGCCCAACC+TGG - chr3.3:93117157-93117176 MS.gene69412:intron 50.0%
CTCAGATAAAACGGGACGGA+GGG + chr3.3:93117433-93117452 None:intergenic 50.0%
CTGGCTCAGATAAAACGGGA+CGG + chr3.3:93117437-93117456 None:intergenic 50.0%
CTTCCAGGCTGATTACGTGT+TGG - chr3.3:93118803-93118822 MS.gene69412:intron 50.0%
GAAATGCTAATGAGTGCCCC+CGG - chr3.3:93117963-93117982 MS.gene69412:CDS 50.0%
GCCAGTCACATACTGAAGGT+AGG + chr3.3:93117118-93117137 None:intergenic 50.0%
TCAGCTGCAACATCTGATCC+GGG + chr3.3:93116868-93116887 None:intergenic 50.0%
TCGAGACTTTGCCAGATCTC+AGG - chr3.3:93118396-93118415 MS.gene69412:CDS 50.0%
TGTCCCAACTGAACCAGGTT+GGG + chr3.3:93117173-93117192 None:intergenic 50.0%
TTGTCCCAACTGAACCAGGT+TGG + chr3.3:93117174-93117193 None:intergenic 50.0%
TTTGTGGCTGTTGGAGAGTC+TGG + chr3.3:93117884-93117903 None:intergenic 50.0%
! CTTGTTGTCCCAACTGAACC+AGG + chr3.3:93117178-93117197 None:intergenic 50.0%
! GTAGCTACTGGAGCACTTGT+TGG - chr3.3:93118978-93118997 MS.gene69412:CDS 50.0%
!! GTGATTCTGGCTCTTGTGGT+CGG - chr3.3:93115854-93115873 MS.gene69412:CDS 50.0%
AATGCTAATGAGTGCCCCCG+GGG - chr3.3:93117965-93117984 MS.gene69412:CDS 55.0%
AATTGCCCACGATAGCACCG+AGG + chr3.3:93116512-93116531 None:intergenic 55.0%
ACCACACATTACAGCCTCGG+CGG + chr3.3:93117855-93117874 None:intergenic 55.0%
ACCTGTAGCATGGTAGAGCC+AGG + chr3.3:93117088-93117107 None:intergenic 55.0%
AGTTTGTACTCCCTCCGTCC+CGG + chr3.3:93117646-93117665 None:intergenic 55.0%
ATCAATGGCACCAGGAGGAC+CGG + chr3.3:93115945-93115964 None:intergenic 55.0%
CAACAAGCTTGCCGGAACTC+AGG - chr3.3:93117191-93117210 MS.gene69412:intron 55.0%
GAAGCCCAACCTGGTTCAGT+TGG - chr3.3:93117166-93117185 MS.gene69412:intron 55.0%
GAGAGGGGATTCGGCTCTTA+AGG - chr3.3:93116399-93116418 MS.gene69412:intron 55.0%
GCCGGGGATCACATGAAGTT+CGG - chr3.3:93116466-93116485 MS.gene69412:intron 55.0%
GCTCAGATAAAACGGGACGG+AGG + chr3.3:93117434-93117453 None:intergenic 55.0%
GGATTGAAGGGCCGAAGATG+TGG + chr3.3:93119114-93119133 None:intergenic 55.0%
GGGGATTCGGCTCTTAAGGA+TGG - chr3.3:93116403-93116422 MS.gene69412:intron 55.0%
GTCAGATATTCCGGGACGGA+GGG - chr3.3:93117633-93117652 MS.gene69412:intron 55.0%
TGCAACATCTGATCCGGGAC+AGG + chr3.3:93116863-93116882 None:intergenic 55.0%
TGCCCAACACGTAATCAGCC+TGG + chr3.3:93118809-93118828 None:intergenic 55.0%
! AGCTTTTGTGGGCAGCTACC+TGG - chr3.3:93117067-93117086 MS.gene69412:CDS 55.0%
! GATAAACCCGAACCGGTTCC+CGG - chr3.3:93115923-93115942 MS.gene69412:CDS 55.0%
! GCTACTGGAGCACTTGTTGG+TGG - chr3.3:93118981-93119000 MS.gene69412:CDS 55.0%
!! ACCTGGCTCTACCATGCTAC+AGG - chr3.3:93117084-93117103 MS.gene69412:CDS 55.0%
!! TACTGCCTCGGTGCTATCGT+GGG - chr3.3:93116504-93116523 MS.gene69412:intron 55.0%
!! TTACTGCCTCGGTGCTATCG+TGG - chr3.3:93116503-93116522 MS.gene69412:intron 55.0%
GGTCAGATATTCCGGGACGG+AGG - chr3.3:93117632-93117651 MS.gene69412:intron 60.0%
GTTGCAAGGATGGGTGGCAG+TGG - chr3.3:93118928-93118947 MS.gene69412:CDS 60.0%
TCAATGGCACCAGGAGGACC+GGG + chr3.3:93115944-93115963 None:intergenic 60.0%
TCCGCCGAGGCTGTAATGTG+TGG - chr3.3:93117851-93117870 MS.gene69412:CDS 60.0%
AGGAGGACCGGGAACCGGTT+CGG + chr3.3:93115933-93115952 None:intergenic 65.0%
GCACCAGGAGGACCGGGAAC+CGG + chr3.3:93115938-93115957 None:intergenic 70.0%
! GAACCGGTTCCCGGTCCTCC+TGG - chr3.3:93115932-93115951 MS.gene69412:CDS 70.0%
! GGAGGACCGGGAACCGGTTC+GGG + chr3.3:93115932-93115951 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 93115800 93119142 93115800 ID=MS.gene69412
chr3.3 mRNA 93115800 93119142 93115800 ID=MS.gene69412.t1;Parent=MS.gene69412
chr3.3 exon 93118923 93119142 93118923 ID=MS.gene69412.t1.exon1;Parent=MS.gene69412.t1
chr3.3 CDS 93118923 93119142 93118923 ID=cds.MS.gene69412.t1;Parent=MS.gene69412.t1
chr3.3 exon 93118291 93118574 93118291 ID=MS.gene69412.t1.exon2;Parent=MS.gene69412.t1
chr3.3 CDS 93118291 93118574 93118291 ID=cds.MS.gene69412.t1;Parent=MS.gene69412.t1
chr3.3 exon 93117730 93118167 93117730 ID=MS.gene69412.t1.exon3;Parent=MS.gene69412.t1
chr3.3 CDS 93117730 93118167 93117730 ID=cds.MS.gene69412.t1;Parent=MS.gene69412.t1
chr3.3 exon 93117025 93117172 93117025 ID=MS.gene69412.t1.exon4;Parent=MS.gene69412.t1
chr3.3 CDS 93117025 93117172 93117025 ID=cds.MS.gene69412.t1;Parent=MS.gene69412.t1
chr3.3 exon 93116525 93116691 93116525 ID=MS.gene69412.t1.exon5;Parent=MS.gene69412.t1
chr3.3 CDS 93116525 93116691 93116525 ID=cds.MS.gene69412.t1;Parent=MS.gene69412.t1
chr3.3 exon 93115800 93116132 93115800 ID=MS.gene69412.t1.exon6;Parent=MS.gene69412.t1
chr3.3 CDS 93115800 93116132 93115800 ID=cds.MS.gene69412.t1;Parent=MS.gene69412.t1
Gene Sequence

>MS.gene69412

ATGAGAGAAAAATCGAGATCAAAAGGAGGATGTTGTGGTTGGTTTATTGCGTTTGTGATTCTGGCTCTTGTGGTCGGTGCTATTGTTTATGCTGTTAAGAAGAAAATCGATAACTCAAATTCAGATAAACCCGAACCGGTTCCCGGTCCTCCTGGTGCCATTGATCAAAAATATGCTTCTGCTCTCAAAACTGCAATGCAATTCTTCGACGTGCAAAAATGTAATATTCCTTTTTTTCATTCTCGGTTACCTTTATTTCTTGCATTTCACAATGTGGTTGGTTTATTATAGGAAGATATTAGATAGTTATTTATTATTATTATTGCATTGATGTTTTTTCGCGTAATGTTTTAAAAACCGAACTGGATATTGAATCAGCAAGATCTCTGGATCATGGTTCAACTGCCAAACTCCGATGAAACCACGATTGAGCCTCCTAAATAACCCACCAAAGTATTTGAACCGTAGCATGTGATTTGATTTGGTTTTGAAAACATTGTTTTGGCATGTTAATGTTGCTGCCCATTCTAGTTGGTTAATGGTCATGTTTGTTATTCATGTGATGCAGCTGGCAAGTTAGAGAACAACAAAATAAGTTGGAGAGGGGATTCGGCTCTTAAGGATGGAAAGCAAGCAGATTTAGATCTAACAAAAGGAATGTATGATGCCGGGGATCACATGAAGTTCGGTTTTCCTATGGCTTTTACTGCCTCGGTGCTATCGTGGGCAATTCTAGAATATGGAGATCAAATGGATGCTGTTGGCCAATTGGAACCAGCACAAGATTCTCTCAGGTGGATCACTGATTTTCTCGTCAATGCTCATCCTTCGGAGAATGTTCTGTATATTCAGGTTAGTTGGTCTGAAAACACAATCTGTTAAGCTGACAGTTGATCAAATGTAAAATATAACTACATTGATGTTTTTCTAGAATTTGTTTCTATCTAGTTTCATTTATCAAAATCGATGTGGCAGGTTGGTGATCCTGTTGCAGATCACAAGTGTTGGAATAGACCTGAGTTAATTACTGAGGAACGACCCCTCTTACAAGTGAACGTATCCTGTCCCGGATCAGATGTTGCAGCTGAAACTGCAGCAGCAATGGCATCAGCATCTTTGGTCTTCAAAAAGTCAGATGCTACATATTCAAGCACTCTCCTCAAGCATGCAAAACAGTTATTTACTTTTGCGGACAAGCATAGAGGAATTTACAGTGAGAATATACCTGAAGTTGCGACATATTATAACTCAACTGGATATGGGGATGAGCTTTTGTGGGCAGCTACCTGGCTCTACCATGCTACAGGTGATGATTCCTACCTTCAGTATGTGACTGGCCAAAATGGAGAAGACTATGCTCAATTTGGAAGCCCAACCTGGTTCAGTTGGGACAACAAGCTTGCCGGAACTCAGGTATGAAGAGCTGCCGAATCTTGTTTCCAAATTCTAAACTACGATCATTTTATAGCTGAAGACAATCATTAGTTATACTAACATTGTTTGCTACCGAAGTGTTTTTTTTTTTTATATATATATATTTTATTGCAACCTACACATTACATAGAATAGACTCAATCAAGCCTTATGGCATTATCTTATCCTAAATGATACTTCTACTTATTTTATTACTCCCTCCGTCCCGTTTTATCTGAGCCAGTTTGGTTTTTCACACAGATTAAGAAAAATGTATAAATAAAGGGGAAAGTGGAATATATTGTATTGGGAATGATGAAAGTAGTATTAATTAGAGTTATATTGTATTGGGAATGATGAAAGTTGTATTGAAAATTGAAATGGCTCAGTTATTTTGGGACACTTTTTTTTAGAAAATGGGTCAGATATTCCGGGACGGAGGGAGTACAAACTTTGCAATGCTTTCATGTATATACTAGGGGATACTTCTACTTATCCTAGATGTTACATCTACTTACTTTATTACAAAGCTTTAATAATCCTTCTTCTTAATGCAGGTTTTGTTATCTAGAGTAAGCTTCTTCAAGGCAAAGGGCCTTTCAAGTTCATATGGTTCTGGCCTCCAAAATTATAGAAAATCCGCCGAGGCTGTAATGTGTGGTCTTCTTCCAGACTCTCCAACAGCCACAAAAAGCAGAACTGATAGTAATGTTCTCCTTGAATGCTATCTGACTTGATATTAACTAATGGGAAATGCTAATGAGTGCCCCCGGGGCACTTTTTATGAAAATTTGTGTATTCAATGCATGGGAAATTGAAGTATTTGAATTTTTTAAATAATAATTTCTTAATTTAGAATCCTTAAAGAGTGTCACGAGAGTACTCGTTAGCAAGACCCTTAACTTATAATCTGATTAGCATGCTGAATAGTTTTATTAGATAGTCTGGAGGAACACAAACTATGGAAATTCCATTTTTAGTAATATATTTCTACTGCAATATGTTGTCTAATTACATTTTTCTTTTTCTTTTATATAGATGGTCTGATATGGGTGAGTGAATGGAACGCTTTGCAGCATCCTGTTGCATCTGCATTCTTAGCTTCTGTTTACAGTGACTATATGCTCACAACGCAGACTCCCAATATAAAATGTGATTCAGATTCCTTCAAACCATCAGATCTTCGAGACTTTGCCAGATCTCAGGTATGCATTCATTGTTATTTTTGTAGAATACTCTCTCTGGCCCTTAATATAAGAAGAATTTACCAAAATCACAGATCAAGGAGTTTTTTTTTTTTTTTTTTGGGTCCAGATCAAGGAGCTTATTTAATTAGTATAAAATTGAGTGGTTATTGTTCCAATTAAACCAATAACATTAAATGTTTTATACCTACATGTAAATTTATACTAAACATTTATCTGACATTAAATAAAGGGTGTAAAAAGAATTTTAGCAATTAATGCACATTGAAATGAATTTCTTTTTCTTATAATAAAGACCAAAAAATACGCACAATTTCTTATAAAAGGGACCAAAGATAGTATCGGCTTAAAATTATCTGCAACTAACTTGAAAACTTGTCTAATACTTCCAGGCTGATTACGTGTTGGGCAAGAATCCTCAGCATATGAGTTTTCTGGTGGGATATGGAAAGAATTTCCCACAATTTGTGCATCACAGGGGAGCTTCAATTCCTGCTAATGCAAAAACTGGTTGCAAGGATGGGTGGCAGTGGCTTGACTCATCCGATCCGAATCCCAATGTAGCTACTGGAGCACTTGTTGGTGGACCTTTCTTAAATGAGACTTACATTGATTCTAGGAACAATTCTATGCAAGGAGAACCAAGCACATATAACAGTGCTGTCATAGTTGGTCTCTTATCAAGTTTAGTCACCACATCTTCGGCCCTTCAATCCTTCTCTTAA
Protein sequence

>MS.gene69412.t1

MREKSRSKGGCCGWFIAFVILALVVGAIVYAVKKKIDNSNSDKPEPVPGPPGAIDQKYASALKTAMQFFDVQKSGKLENNKISWRGDSALKDGKQADLDLTKGMYDAGDHMKFGFPMAFTASVLSWAILEYGDQMDAVGQLEPAQDSLRWITDFLVNAHPSENVLYIQVGDPVADHKCWNRPELITEERPLLQVNVSCPGSDVAAETAAAMASASLVFKKSDATYSSTLLKHAKQLFTFADKHRGIYSENIPEVATYYNSTGYGDELLWAATWLYHATGDDSYLQYVTGQNGEDYAQFGSPTWFSWDNKLAGTQVLLSRVSFFKAKGLSSSYGSGLQNYRKSAEAVMCGLLPDSPTATKSRTDNGLIWVSEWNALQHPVASAFLASVYSDYMLTTQTPNIKCDSDSFKPSDLRDFARSQADYVLGKNPQHMSFLVGYGKNFPQFVHHRGASIPANAKTGCKDGWQWLDSSDPNPNVATGALVGGPFLNETYIDSRNNSMQGEPSTYNSAVIVGLLSSLVTTSSALQSFS