AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene014436

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene014436.t1 MTR_3g113720 99.622 529 2 0 1 529 1 529 0.0 1095
MS.gene014436.t1 MTR_8g075990 62.330 515 191 1 14 528 23 534 0.0 638
MS.gene014436.t1 MTR_5g085730 44.798 471 246 9 58 519 32 497 6.59e-138 409
MS.gene014436.t1 MTR_8g099410 46.482 469 237 10 58 518 29 491 8.68e-137 406
MS.gene014436.t1 MTR_4g074960 43.579 475 249 7 58 521 29 495 5.26e-136 407
MS.gene014436.t1 MTR_8g099410 46.482 469 237 10 58 518 29 491 2.81e-135 406
MS.gene014436.t1 MTR_5g093590 44.304 474 243 10 58 518 35 500 7.75e-132 393
MS.gene014436.t1 MTR_3g080190 43.524 471 252 9 58 519 41 506 7.86e-130 389
MS.gene014436.t1 MTR_5g009970 42.521 468 248 6 58 519 42 494 1.58e-128 384
MS.gene014436.t1 MTR_1g037340 44.563 469 239 10 58 518 26 481 1.40e-126 379
MS.gene014436.t1 MTR_5g010000 43.644 472 245 7 58 523 41 497 6.79e-125 375
MS.gene014436.t1 MTR_3g105230 41.850 454 242 7 58 506 31 467 1.15e-123 371
MS.gene014436.t1 MTR_3g117500 42.827 474 250 9 56 519 23 485 3.21e-122 368
MS.gene014436.t1 MTR_3g080810 42.004 469 253 8 56 516 34 491 1.00e-121 367
MS.gene014436.t1 MTR_3g023740 41.453 468 252 7 58 520 31 481 1.15e-118 358
MS.gene014436.t1 MTR_2g028480 41.698 530 267 14 14 518 77 589 3.78e-114 351
MS.gene014436.t1 MTR_4g035955 40.977 471 255 9 53 516 10 464 1.21e-113 345
MS.gene014436.t1 MTR_5g009970 41.452 427 230 5 98 519 9 420 3.14e-113 342
MS.gene014436.t1 MTR_8g104820 41.300 477 247 11 56 516 29 488 3.97e-113 345
MS.gene014436.t1 MTR_3g010330 41.880 468 248 10 58 516 26 478 5.67e-112 341
MS.gene014436.t1 MTR_4g035930 40.343 466 255 8 58 516 16 465 2.79e-110 336
MS.gene014436.t1 MTR_3g082440 39.212 533 285 15 14 524 82 597 6.79e-106 330
MS.gene014436.t1 MTR_5g009970 40.686 408 222 5 117 519 1 393 2.49e-104 318
MS.gene014436.t1 MTR_1g088190 38.923 483 257 10 51 525 33 485 4.53e-103 318
MS.gene014436.t1 MTR_4g035975 38.703 478 260 12 56 516 26 487 1.42e-101 315
MS.gene014436.t1 MTR_3g090540 36.981 530 282 18 18 519 76 581 3.77e-95 301
MS.gene014436.t1 MTR_5g009970 40.476 336 180 5 189 519 5 325 2.29e-79 252
MS.gene014436.t1 MTR_1g088190 39.557 316 158 8 51 362 33 319 1.06e-58 198
MS.gene014436.t1 MTR_1g037320 45.912 159 86 0 117 275 1 159 6.44e-38 141
MS.gene014436.t1 MTR_1g037320 45.082 122 61 3 400 516 169 289 1.82e-27 112
MS.gene014436.t1 MTR_4g128810 44.586 157 86 1 373 528 187 343 6.77e-37 140
MS.gene014436.t1 MTR_7g108925 37.576 165 98 2 366 526 43 206 2.20e-34 129
MS.gene014436.t1 MTR_0393s0050 38.931 131 74 3 375 500 29 158 7.86e-23 96.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene014436.t1 AT1G19940 68.371 528 154 4 1 528 1 515 0.0 709
MS.gene014436.t1 AT1G19940 68.371 528 154 4 1 528 1 515 0.0 709
MS.gene014436.t1 AT1G75680 69.187 529 157 5 1 528 1 524 0.0 708
MS.gene014436.t1 AT1G19940 65.952 420 130 4 1 420 1 407 0.0 546
MS.gene014436.t1 AT4G11050 45.798 476 244 9 58 525 27 496 1.60e-139 414
MS.gene014436.t1 AT4G11050 46.008 476 243 10 58 525 27 496 9.61e-139 415
MS.gene014436.t1 AT4G11050 46.008 476 243 10 58 525 27 496 1.07e-138 415
MS.gene014436.t1 AT1G64390 44.676 479 251 9 58 528 26 498 1.49e-136 409
MS.gene014436.t1 AT2G32990 43.644 472 244 10 58 516 40 502 3.69e-131 392
MS.gene014436.t1 AT2G44540 44.397 473 247 7 52 518 28 490 1.65e-128 384
MS.gene014436.t1 AT2G44550 45.435 471 238 9 53 516 29 487 2.93e-128 383
MS.gene014436.t1 AT2G44560 45.032 473 244 8 52 518 28 490 4.58e-126 378
MS.gene014436.t1 AT1G48930 46.055 469 235 7 58 516 31 491 3.91e-125 380
MS.gene014436.t1 AT2G44570 42.887 471 252 9 55 518 31 491 3.72e-122 368
MS.gene014436.t1 AT4G23560 42.463 471 251 6 57 522 23 478 2.12e-119 360
MS.gene014436.t1 AT1G71380 42.706 473 248 9 52 516 19 476 1.11e-118 358
MS.gene014436.t1 AT4G02290 41.667 468 255 9 56 516 51 507 1.11e-118 360
MS.gene014436.t1 AT1G02800 41.983 474 255 10 55 521 41 501 6.09e-118 357
MS.gene014436.t1 AT3G43860 41.845 466 249 7 58 518 35 483 3.02e-117 355
MS.gene014436.t1 AT3G43860 41.845 466 249 7 58 518 35 483 3.02e-117 355
MS.gene014436.t1 AT1G22880 42.616 474 249 9 58 523 25 483 5.03e-117 354
MS.gene014436.t1 AT4G09740 42.340 470 251 7 58 522 24 478 6.64e-117 353
MS.gene014436.t1 AT4G39010 40.764 471 259 9 56 516 28 488 6.45e-115 349
MS.gene014436.t1 AT1G23210 40.000 470 254 9 58 515 29 482 5.71e-114 347
MS.gene014436.t1 AT1G70710 40.127 471 252 9 58 515 29 482 6.54e-114 347
MS.gene014436.t1 AT4G39000 39.496 476 268 9 51 516 19 484 5.85e-111 339
MS.gene014436.t1 AT5G49720 40.566 530 273 14 14 518 74 586 3.71e-108 336
MS.gene014436.t1 AT4G24260 43.149 489 244 14 58 522 109 587 9.34e-105 327
MS.gene014436.t1 AT4G38990 37.654 486 268 12 51 516 17 487 1.87e-100 312
MS.gene014436.t1 AT1G65610 36.484 529 298 13 14 521 82 593 3.10e-100 315
MS.gene014436.t1 AT1G22880 41.546 414 220 8 117 523 1 399 3.54e-99 305
MS.gene014436.t1 AT4G02290 40.148 406 226 8 117 516 1 395 1.39e-95 296
MS.gene014436.t1 AT2G44570 41.514 383 212 7 55 435 31 403 6.39e-89 279
MS.gene014436.t1 AT4G39010 39.516 372 209 8 56 421 28 389 8.75e-83 263
MS.gene014436.t1 AT1G22880 44.728 313 155 7 58 366 25 323 8.63e-71 230
MS.gene014436.t1 AT4G24260 42.119 387 193 13 58 420 109 488 7.89e-70 232
MS.gene014436.t1 AT4G24260 44.164 317 150 11 58 352 109 420 1.63e-63 214
MS.gene014436.t1 AT4G38990 36.311 347 183 7 51 392 17 330 1.44e-59 201

Find 122 sgRNAs with CRISPR-Local

Find 279 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTATTGCGTTTGTGATTC+TGG 0.168400 3.1:-90148649 MS.gene014436:CDS
GAGCATAATCTTCTCCATTT+TGG 0.188257 3.1:+90147353 None:intergenic
GGAGAAGATTATGCTCAATT+TGG 0.211354 3.1:-90147346 MS.gene014436:CDS
TATTATAACTCAACTGGATA+TGG 0.212670 3.1:-90147451 MS.gene014436:CDS
TTTATATAGATGGTCTGATA+TGG 0.236900 3.1:-90146493 MS.gene014436:intron
ATGAGACTTACATTGATTCT+AGG 0.242483 3.1:-90145204 MS.gene014436:CDS
GGAGAATGTTCTGTATATTC+AGG 0.309453 3.1:-90147860 MS.gene014436:intron
TCGTGGGCAATTCTAGAATA+TGG 0.312428 3.1:-90147970 MS.gene014436:CDS
AGCAATGGCATCAGCATCTT+TGG 0.319777 3.1:-90147593 MS.gene014436:CDS
GGAGGACCGGGAACCGGTTC+GGG 0.321906 3.1:+90148561 None:intergenic
TTTGTGGCTGTTGGAGAGTC+TGG 0.335910 3.1:+90146848 None:intergenic
GAGAGGGGATTCGGCTCTTA+AGG 0.338315 3.1:-90148091 MS.gene014436:CDS
CAGTATGTGACTGGCCAAAA+TGG 0.350134 3.1:-90147367 MS.gene014436:CDS
CTTTCAAGTTCATATGGTTC+CGG 0.354604 3.1:-90146920 MS.gene014436:CDS
GATAAACCCGAACCGGTTCC+CGG 0.365719 3.1:-90148567 MS.gene014436:CDS
TTATAATATGTCGCAACTTC+AGG 0.368599 3.1:+90147466 None:intergenic
TGTCCCAACTGAACCAGGTT+GGG 0.383206 3.1:+90147320 None:intergenic
AGGAGGACCGGGAACCGGTT+CGG 0.385546 3.1:+90148560 None:intergenic
ATTATAACTCAACTGGATAT+GGG 0.400764 3.1:-90147450 MS.gene014436:CDS
GCTGGGGATCACATGAAGTT+TGG 0.413208 3.1:-90148024 MS.gene014436:CDS
AAGGGCCTTTCAAGTTCATA+TGG 0.416309 3.1:-90146926 MS.gene014436:CDS
TCCCACAATTTGTGCATCAC+AGG 0.417030 3.1:-90145345 MS.gene014436:CDS
TCTCGTCAATGCTCATCCTT+CGG 0.427984 3.1:-90147881 MS.gene014436:CDS
AATAAGTTGGAGAGGGGATT+CGG 0.430660 3.1:-90148100 MS.gene014436:CDS
AATGGATGCTGTTGGCCAAT+TGG 0.431030 3.1:-90147941 MS.gene014436:CDS
TTCCAGGCTGATTACGTGTT+GGG 0.431458 3.1:-90145415 MS.gene014436:intron
TTCAGCTGCAACATCTGATC+CGG 0.435202 3.1:+90147624 None:intergenic
ATCAATGGCACCAGGAGGAC+CGG 0.439759 3.1:+90148548 None:intergenic
GCGACATATTATAACTCAAC+TGG 0.441782 3.1:-90147457 MS.gene014436:CDS
AAGTTTAGTCACCACGTCTT+CGG 0.441900 3.1:-90145119 MS.gene014436:CDS
CCGAATCCCAATGTAGCTAC+TGG 0.444550 3.1:-90145253 MS.gene014436:CDS
ACAAAAGGAATGTATGATGC+TGG 0.444871 3.1:-90148042 MS.gene014436:CDS
GTTGCAAGGATGGGTGGCAG+TGG 0.446186 3.1:-90145291 MS.gene014436:CDS
TCTAGAATATGGAGATCAAA+TGG 0.446875 3.1:-90147959 MS.gene014436:CDS
ATCTAGAGTAAGCTTCTTCA+AGG 0.446995 3.1:-90146951 MS.gene014436:CDS
AGCTGAAACTGCAGCAGCAA+TGG 0.448020 3.1:-90147608 MS.gene014436:CDS
GCACCAGGAGGACCGGGAAC+CGG 0.455702 3.1:+90148555 None:intergenic
TCGAGACTTTGCCAGATCTC+AGG 0.456961 3.1:-90146339 MS.gene014436:intron
TTATATAGATGGTCTGATAT+GGG 0.457104 3.1:-90146492 MS.gene014436:intron
AGTTGGGACAACAAGCTTGC+CGG 0.460646 3.1:-90147307 MS.gene014436:CDS
CAACACTTGTGATCTGCAAC+AGG 0.466398 3.1:+90147706 None:intergenic
AATCTTGTGCTGGTTCCAAT+TGG 0.470000 3.1:+90147926 None:intergenic
TAGAGAACAACAAAATAAGT+TGG 0.470544 3.1:-90148113 MS.gene014436:CDS
CCAGTAGCTACATTGGGATT+CGG 0.470664 3.1:+90145253 None:intergenic
CCCTGTGATGCACAAATTGT+GGG 0.472083 3.1:+90145344 None:intergenic
CTCAATTTGGAAGCCCAACC+TGG 0.472205 3.1:-90147333 MS.gene014436:CDS
GTCTGATATGGGTGAGTGAA+TGG 0.473028 3.1:-90146481 MS.gene014436:CDS
GCTAAGAATGCAGATGCAAC+AGG 0.473355 3.1:+90146443 None:intergenic
ATGAATGCATACCTGAGATC+TGG 0.474526 3.1:+90146328 None:intergenic
CTTGTTGTCCCAACTGAACC+AGG 0.475271 3.1:+90147315 None:intergenic
AGGATACGTTCACTTGTAAG+AGG 0.479664 3.1:+90147650 None:intergenic
CAAAAGGAGGATGTTGTGGT+TGG 0.485199 3.1:-90148671 MS.gene014436:CDS
CAAAAGGAATGTATGATGCT+GGG 0.486711 3.1:-90148041 MS.gene014436:CDS
TACTGCCTCGGTGCTATCGT+GGG 0.488542 3.1:-90147986 MS.gene014436:CDS
GAACCGGTTCCCGGTCCTCC+TGG 0.489943 3.1:-90148558 MS.gene014436:CDS
GTAGCTACTGGAGCACTTGT+TGG 0.494083 3.1:-90145241 MS.gene014436:CDS
GTAAGCTTCTTCAAGGCAAA+GGG 0.494576 3.1:-90146944 MS.gene014436:CDS
AACAACAAAATAAGTTGGAG+AGG 0.494998 3.1:-90148108 MS.gene014436:CDS
AAATTCAGATAAACCCGAAC+CGG 0.495107 3.1:-90148574 MS.gene014436:CDS
GCAGATTTAGATCTAACAAA+AGG 0.496053 3.1:-90148057 MS.gene014436:CDS
TCGAAGATCTGATGGTTTGA+AGG 0.496987 3.1:+90146358 None:intergenic
GAAGCCCAACCTGGTTCAGT+TGG 0.502198 3.1:-90147324 MS.gene014436:CDS
CCCACAATTTGTGCATCACA+GGG 0.503590 3.1:-90145344 MS.gene014436:CDS
GTGATTCTGGCTCTTGTGGT+CGG 0.505371 3.1:-90148636 MS.gene014436:CDS
AAGCCCAACCTGGTTCAGTT+GGG 0.506162 3.1:-90147323 MS.gene014436:CDS
TATAACAGTGCTGTCATAGT+TGG 0.509805 3.1:-90145151 MS.gene014436:CDS
TGCAACATCTGATCCGGGAC+AGG 0.511750 3.1:+90147630 None:intergenic
GCTACTGGAGCACTTGTTGG+TGG 0.515300 3.1:-90145238 MS.gene014436:CDS
ACCTGTAGCATGGTAGAGCC+AGG 0.516769 3.1:+90147405 None:intergenic
TTGTCCCAACTGAACCAGGT+TGG 0.523981 3.1:+90147319 None:intergenic
AACCAGCACAAGATTCTCTC+AGG 0.525412 3.1:-90147918 MS.gene014436:CDS
TAGTTTAGGAGAAGGATTGA+AGG 0.527196 3.1:+90145095 None:intergenic
AGCTCTTCATACCTGAGTTC+CGG 0.531252 3.1:+90147288 None:intergenic
CACCTGAGAGAATCTTGTGC+TGG 0.533013 3.1:+90147916 None:intergenic
CCCCTGTGATGCACAAATTG+TGG 0.536207 3.1:+90145343 None:intergenic
AGTGCTCCAGTAGCTACATT+GGG 0.536888 3.1:+90145247 None:intergenic
CAACAAGCTTGCCGGAACTC+AGG 0.539769 3.1:-90147299 MS.gene014436:intron
TCCTACCTTCAGTATGTGAC+TGG 0.540197 3.1:-90147376 MS.gene014436:CDS
CTTCCAGGCTGATTACGTGT+TGG 0.540229 3.1:-90145416 MS.gene014436:intron
CGGAACCATATGAACTTGAA+AGG 0.540605 3.1:+90146921 None:intergenic
AAGTGCTCCAGTAGCTACAT+TGG 0.543749 3.1:+90145246 None:intergenic
GCAAAGTCTCGAAGATCTGA+TGG 0.544007 3.1:+90146350 None:intergenic
TTACTGCCTCGGTGCTATCG+TGG 0.544348 3.1:-90147987 MS.gene014436:CDS
ATGTAAGTCTCATTTAAGAA+AGG 0.549620 3.1:+90145214 None:intergenic
GTTTGTGATTCTGGCTCTTG+TGG 0.550904 3.1:-90148640 MS.gene014436:CDS
AGTAAGCTTCTTCAAGGCAA+AGG 0.552883 3.1:-90146945 MS.gene014436:CDS
ACCTGGCTCTACCATGCTAC+AGG 0.553331 3.1:-90147406 MS.gene014436:CDS
CAAGTGAACGTATCCTGTCC+CGG 0.560701 3.1:-90147643 MS.gene014436:CDS
CTGTTGCAGATCACAAGTGT+TGG 0.571688 3.1:-90147705 MS.gene014436:CDS
TCAATGGCACCAGGAGGACC+GGG 0.573055 3.1:+90148549 None:intergenic
ACAGCACTGTTATATGTGCT+TGG 0.573334 3.1:+90145160 None:intergenic
GGGGATTCGGCTCTTAAGGA+TGG 0.573397 3.1:-90148087 MS.gene014436:CDS
AGTTTAGGAGAAGGATTGAA+GGG 0.578741 3.1:+90145096 None:intergenic
ACATACTATAGTTTAGGAGA+AGG 0.578891 3.1:+90145087 None:intergenic
TTATAACTCAACTGGATATG+GGG 0.582247 3.1:-90147449 MS.gene014436:CDS
AAGACCACACATTACAGCCT+CGG 0.582653 3.1:+90146874 None:intergenic
ACAACAAAATAAGTTGGAGA+GGG 0.586545 3.1:-90148107 MS.gene014436:CDS
AGCTACATTGGGATTCGGAT+CGG 0.590300 3.1:+90145258 None:intergenic
TCTAGGAACAATTCTATGCA+AGG 0.591369 3.1:-90145187 MS.gene014436:CDS
TCAGCTGCAACATCTGATCC+GGG 0.591508 3.1:+90147625 None:intergenic
GGATTGAAGGGCCGAAGACG+TGG 0.596750 3.1:+90145108 None:intergenic
CGTTCCTCAGTAATTAACTC+AGG 0.597205 3.1:+90147676 None:intergenic
AGATCAAAAGGAGGATGTTG+TGG 0.599433 3.1:-90148675 MS.gene014436:CDS
AAAAGGAATGTATGATGCTG+GGG 0.601405 3.1:-90148040 MS.gene014436:CDS
CAGCACAAGATTCTCTCAGG+TGG 0.615600 3.1:-90147915 MS.gene014436:CDS
TTTGGCCAGTCACATACTGA+AGG 0.616951 3.1:+90147371 None:intergenic
AGGAATCATCACCTGTAGCA+TGG 0.618916 3.1:+90147395 None:intergenic
AAACTGGTTGCAAGGATGGG+TGG 0.621140 3.1:-90145297 MS.gene014436:CDS
GGATACGTTCACTTGTAAGA+GGG 0.631666 3.1:+90147651 None:intergenic
GGAGATCAAATGGATGCTGT+TGG 0.641613 3.1:-90147949 MS.gene014436:CDS
TCCGCCGAGGCTGTAATGTG+TGG 0.641659 3.1:-90146878 MS.gene014436:CDS
ACCAGAAAACTCATATGCTG+AGG 0.647665 3.1:+90145385 None:intergenic
ACCGAGGCAGTAAAAGCCAT+AGG 0.648080 3.1:+90147997 None:intergenic
CAACAAAATAAGTTGGAGAG+GGG 0.657191 3.1:-90148106 MS.gene014436:CDS
ATATACAGAACATTCTCCGA+AGG 0.657437 3.1:+90147865 None:intergenic
GCCAGTCACATACTGAAGGT+AGG 0.663540 3.1:+90147375 None:intergenic
ACCACACATTACAGCCTCGG+CGG 0.674391 3.1:+90146877 None:intergenic
GATACGTTCACTTGTAAGAG+GGG 0.676663 3.1:+90147652 None:intergenic
CCACAATTTGTGCATCACAG+GGG 0.697583 3.1:-90145343 MS.gene014436:CDS
TAGACCTGAGTTAATTACTG+AGG 0.715470 3.1:-90147680 MS.gene014436:CDS
AAATTATAGAAAATCCGCCG+AGG 0.730261 3.1:-90146891 MS.gene014436:CDS
AATTGCCCACGATAGCACCG+AGG 0.782103 3.1:+90147981 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAAAATGTATAAATAAA+GGG + chr3.1:90147764-90147783 None:intergenic 10.0%
!! ATATATAAAAAAAAACACTT+CGG + chr3.1:90146608-90146627 None:intergenic 10.0%
!! TAAGAAAAATGTATAAATAA+AGG + chr3.1:90147765-90147784 None:intergenic 10.0%
!! TAGAAATATATTACTAAAAA+TGG + chr3.1:90147240-90147259 None:intergenic 10.0%
!!! TTTAATGTTATTGATTTAAT+TGG + chr3.1:90147859-90147878 None:intergenic 10.0%
!! AAAATGGAATATATTGTATT+GGG + chr3.1:90147740-90147759 None:intergenic 15.0%
!! AAAATTGTGTCAATTAAATT+GGG - chr3.1:90147800-90147819 MS.gene014436:intron 15.0%
!! AGAAAAATGTATAAATAAAG+GGG + chr3.1:90147763-90147782 None:intergenic 15.0%
!! ATAAGTTAGTAGTATTAATT+AGG + chr3.1:90148018-90148037 None:intergenic 15.0%
!! ATTTATCTGACATTAAATAA+AGG - chr3.1:90148198-90148217 MS.gene014436:intron 15.0%
!! GTAAATTCTTCTTATATTAA+GGG + chr3.1:90147515-90147534 None:intergenic 15.0%
!! TAAGTTAGTAGTATTAATTA+GGG + chr3.1:90148017-90148036 None:intergenic 15.0%
!! TTTATCTGACATTAAATAAA+GGG - chr3.1:90148199-90148218 MS.gene014436:intron 15.0%
!!! TTCTTTTTCTTTTATATAGA+TGG - chr3.1:90147286-90147305 MS.gene014436:intron 15.0%
!! AAGTTAGTAGTATTAATTAG+GGG + chr3.1:90148016-90148035 None:intergenic 20.0%
!! AGTTGTATTGAAAATTGAAA+TGG + chr3.1:90147667-90147686 None:intergenic 20.0%
!! CAAAATTGTGTCAATTAAAT+TGG - chr3.1:90147799-90147818 MS.gene014436:intron 20.0%
!! CTAATCAGATTATAAGTTAA+GGG + chr3.1:90147165-90147184 None:intergenic 20.0%
!! GAAAATGGAATATATTGTAT+TGG + chr3.1:90147741-90147760 None:intergenic 20.0%
!! GGACAAAAATAAAATCAAAT+GGG + chr3.1:90147934-90147953 None:intergenic 20.0%
!! GGTAAATTCTTCTTATATTA+AGG + chr3.1:90147516-90147535 None:intergenic 20.0%
!! GTTGTATTGAAAATTGAAAT+GGG + chr3.1:90147666-90147685 None:intergenic 20.0%
!! TAGAATTTGTAAACAAGATT+CGG + chr3.1:90146528-90146547 None:intergenic 20.0%
!! TTGTTTACAAATTCTAAACT+AGG - chr3.1:90146532-90146551 MS.gene014436:intron 20.0%
!! TTTAATACACATACAAACAA+AGG - chr3.1:90148059-90148078 MS.gene014436:CDS 20.0%
!!! AAAACAGTTATTTACTTTTG+CGG - chr3.1:90146268-90146287 MS.gene014436:intron 20.0%
!!! AATAGTTTTATTAGATAGTC+TGG - chr3.1:90147192-90147211 MS.gene014436:intron 20.0%
!!! ATAATCCTTTTTTTCATTCT+CGG - chr3.1:90145322-90145341 MS.gene014436:CDS 20.0%
!!! ATCTGAATCACATTTTATAT+TGG + chr3.1:90147410-90147429 None:intergenic 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG + chr3.1:90147630-90147649 None:intergenic 20.0%
!!! GGAGTTGTATTTTTTTTTTT+TGG - chr3.1:90147551-90147570 MS.gene014436:CDS 20.0%
!!! TCTGAATCACATTTTATATT+GGG + chr3.1:90147409-90147428 None:intergenic 20.0%
! AAGAAATGTGAAAAATGCAA+AGG - chr3.1:90148141-90148160 MS.gene014436:intron 25.0%
! AATGCTTTCATGTATATACT+AGG - chr3.1:90146730-90146749 MS.gene014436:intron 25.0%
! AATTTGTGTATTCAATGCAT+TGG - chr3.1:90147061-90147080 MS.gene014436:intron 25.0%
! ACGCACAATTTCTTATAATA+GGG - chr3.1:90148293-90148312 MS.gene014436:intron 25.0%
! AGAAATGTGAAAAATGCAAA+GGG - chr3.1:90148142-90148161 MS.gene014436:intron 25.0%
! ATGCATCTAGTAATTTGAAA+AGG + chr3.1:90147970-90147989 None:intergenic 25.0%
! ATGCTTTCATGTATATACTA+GGG - chr3.1:90146731-90146750 MS.gene014436:intron 25.0%
! ATGTAAGTCTCATTTAAGAA+AGG + chr3.1:90148578-90148597 None:intergenic 25.0%
! ATTATAACTCAACTGGATAT+GGG - chr3.1:90146339-90146358 MS.gene014436:intron 25.0%
! CAAAAATAAAATCAAATGGG+TGG + chr3.1:90147931-90147950 None:intergenic 25.0%
! GCTAATCAGATTATAAGTTA+AGG + chr3.1:90147166-90147185 None:intergenic 25.0%
! GGGACAAAAATAAAATCAAA+TGG + chr3.1:90147935-90147954 None:intergenic 25.0%
! TACGCACAATTTCTTATAAT+AGG - chr3.1:90148292-90148311 MS.gene014436:intron 25.0%
! TAGAGAACAACAAAATAAGT+TGG - chr3.1:90145676-90145695 MS.gene014436:intron 25.0%
! TATTATAACTCAACTGGATA+TGG - chr3.1:90146338-90146357 MS.gene014436:intron 25.0%
! TGCATCTAGTAATTTGAAAA+GGG + chr3.1:90147969-90147988 None:intergenic 25.0%
! TGTATAAATAAAGGGGAAAA+TGG + chr3.1:90147756-90147775 None:intergenic 25.0%
! TTATATAGATGGTCTGATAT+GGG - chr3.1:90147297-90147316 MS.gene014436:intron 25.0%
! TTCATTTATCAAAATCGATG+TGG - chr3.1:90146048-90146067 MS.gene014436:intron 25.0%
! TTGTGAAATGCAAGAAATAA+AGG + chr3.1:90145351-90145370 None:intergenic 25.0%
! TTTATATAGATGGTCTGATA+TGG - chr3.1:90147296-90147315 MS.gene014436:intron 25.0%
!! CTGACTTGATATTAACTAAT+GGG - chr3.1:90147001-90147020 MS.gene014436:intron 25.0%
!! TATTAATTAGGGGTATGTTT+AGG + chr3.1:90148006-90148025 None:intergenic 25.0%
!! TCTGACTTGATATTAACTAA+TGG - chr3.1:90147000-90147019 MS.gene014436:intron 25.0%
!!! AAGAAATTGTGCGTATTTTT+TGG + chr3.1:90148287-90148306 None:intergenic 25.0%
!!! AGAAGCATATTTTTGATCAA+TGG + chr3.1:90145259-90145278 None:intergenic 25.0%
!!! AGTAAGTAGAAGTATCATTT+AGG + chr3.1:90146694-90146713 None:intergenic 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG + chr3.1:90147631-90147650 None:intergenic 25.0%
!!! TAATGTTTTAAAAACCGAAC+TGG - chr3.1:90145442-90145461 MS.gene014436:intron 25.0%
!!! TGGTTTTGAAAACATTGTTT+TGG - chr3.1:90145581-90145600 MS.gene014436:intron 25.0%
!!! TTTTTTTTTGGTACAGATCA+AGG - chr3.1:90147563-90147582 MS.gene014436:CDS 25.0%
AAAACTTGTCTAATACTTCC+AGG - chr3.1:90148358-90148377 MS.gene014436:intron 30.0%
AAATGTGAAAAATGCAAAGG+GGG - chr3.1:90148144-90148163 MS.gene014436:intron 30.0%
AGAGAAAAATCGAGATCAAA+AGG - chr3.1:90145102-90145121 MS.gene014436:CDS 30.0%
ATAATCCTTCTTCTTAATGC+AGG - chr3.1:90146808-90146827 MS.gene014436:intron 30.0%
ATTTCTTGCATTTCACAATG+TGG - chr3.1:90145353-90145372 MS.gene014436:CDS 30.0%
CATACAAACAAAGGACAATT+TGG - chr3.1:90148068-90148087 MS.gene014436:CDS 30.0%
CATCTAGTAATTTGAAAAGG+GGG + chr3.1:90147967-90147986 None:intergenic 30.0%
GAAATGTGAAAAATGCAAAG+GGG - chr3.1:90148143-90148162 MS.gene014436:intron 30.0%
GCAGATTTAGATCTAACAAA+AGG - chr3.1:90145732-90145751 MS.gene014436:intron 30.0%
GCATCTAGTAATTTGAAAAG+GGG + chr3.1:90147968-90147987 None:intergenic 30.0%
GTCTATTCTATGTAATGTGT+AGG + chr3.1:90146643-90146662 None:intergenic 30.0%
TAGGATAAGATAATGCCATA+AGG + chr3.1:90146675-90146694 None:intergenic 30.0%
TGCTTTCATGTATATACTAG+GGG - chr3.1:90146732-90146751 MS.gene014436:intron 30.0%
TTATAACTCAACTGGATATG+GGG - chr3.1:90146340-90146359 MS.gene014436:CDS 30.0%
TTATAATATGTCGCAACTTC+AGG + chr3.1:90146326-90146345 None:intergenic 30.0%
TTGTGTCAATTAAATTGGGA+CGG - chr3.1:90147804-90147823 MS.gene014436:intron 30.0%
TTTACCAAAATCACAGATCA+AGG - chr3.1:90147530-90147549 MS.gene014436:CDS 30.0%
! AACAACAAAATAAGTTGGAG+AGG - chr3.1:90145681-90145700 MS.gene014436:intron 30.0%
! ACAACAAAATAAGTTGGAGA+GGG - chr3.1:90145682-90145701 MS.gene014436:intron 30.0%
! CGGATTTTCTATAATTTTGG+AGG + chr3.1:90146895-90146914 None:intergenic 30.0%
! TCTAGAATATGGAGATCAAA+TGG - chr3.1:90145830-90145849 MS.gene014436:intron 30.0%
! TTCTGTATATTCAGGTTAGT+TGG - chr3.1:90145937-90145956 MS.gene014436:intron 30.0%
! TTGAAATGGGTCAGTTATTT+TGG + chr3.1:90147653-90147672 None:intergenic 30.0%
! TTTTTGTAGAATACTCTCTC+TGG - chr3.1:90147489-90147508 MS.gene014436:CDS 30.0%
!! AATACTTTGGTGGGTTATTT+AGG + chr3.1:90145537-90145556 None:intergenic 30.0%
!! ATGAGACTTACATTGATTCT+AGG - chr3.1:90148585-90148604 MS.gene014436:CDS 30.0%
!! CAATGTGGTTGGTTTATTAT+AGG - chr3.1:90145368-90145387 MS.gene014436:CDS 30.0%
!! TGAAATGGGTCAGTTATTTT+GGG + chr3.1:90147652-90147671 None:intergenic 30.0%
!! TTTTCTATAATTTTGGAGGC+CGG + chr3.1:90146891-90146910 None:intergenic 30.0%
!!! AATTTTCATAAAAAGTGCCC+CGG + chr3.1:90147045-90147064 None:intergenic 30.0%
!!! AGTTTTATTAGATAGTCTGG+AGG - chr3.1:90147195-90147214 MS.gene014436:intron 30.0%
AAAAGGAATGTATGATGCTG+GGG - chr3.1:90145749-90145768 MS.gene014436:intron 35.0%
AAATTATAGAAAATCCGCCG+AGG - chr3.1:90146898-90146917 MS.gene014436:CDS 35.0%
AAATTCAGATAAACCCGAAC+CGG - chr3.1:90145215-90145234 MS.gene014436:CDS 35.0%
AACCGAACTGGATATTGAAT+CGG - chr3.1:90145454-90145473 MS.gene014436:intron 35.0%
AATGTGAAAAATGCAAAGGG+GGG - chr3.1:90148145-90148164 MS.gene014436:intron 35.0%
ACAAAAGGAATGTATGATGC+TGG - chr3.1:90145747-90145766 MS.gene014436:intron 35.0%
AGAAAATGGGTCAGTTATTC+CGG + chr3.1:90147617-90147636 None:intergenic 35.0%
ATAGACTCAATCAAGCCTTA+TGG - chr3.1:90146657-90146676 MS.gene014436:intron 35.0%
ATAGGGATCAGAGATAGTAT+CGG - chr3.1:90148310-90148329 MS.gene014436:intron 35.0%
ATATACAGAACATTCTCCGA+AGG + chr3.1:90145927-90145946 None:intergenic 35.0%
ATCAAGTCAGATAGCATTCA+AGG + chr3.1:90146991-90147010 None:intergenic 35.0%
ATGCTACGGTTCAAATACTT+TGG + chr3.1:90145550-90145569 None:intergenic 35.0%
ATTCCTGCTAATGCAAAAAC+TGG - chr3.1:90148476-90148495 MS.gene014436:intron 35.0%
CAAAACCTGCATTAAGAAGA+AGG + chr3.1:90146816-90146835 None:intergenic 35.0%
CAAAAGGAATGTATGATGCT+GGG - chr3.1:90145748-90145767 MS.gene014436:intron 35.0%
CAAATGGGTGGTTACATTAA+GGG + chr3.1:90147919-90147938 None:intergenic 35.0%
CCAAATCAAATCACATGCTA+CGG + chr3.1:90145564-90145583 None:intergenic 35.0%
GAAAAATCGAGATCAAAAGG+AGG - chr3.1:90145105-90145124 MS.gene014436:CDS 35.0%
GCGACATATTATAACTCAAC+TGG - chr3.1:90146332-90146351 MS.gene014436:intron 35.0%
GGAGAAGATTATGCTCAATT+TGG - chr3.1:90146443-90146462 MS.gene014436:CDS 35.0%
GGAGAATGTTCTGTATATTC+AGG - chr3.1:90145929-90145948 MS.gene014436:intron 35.0%
GGAGGTAGTATAAAATTGAG+TGG - chr3.1:90147825-90147844 MS.gene014436:intron 35.0%
GGTAACCGAGAATGAAAAAA+AGG + chr3.1:90145330-90145349 None:intergenic 35.0%
GTTTATTGCGTTTGTGATTC+TGG - chr3.1:90145140-90145159 MS.gene014436:CDS 35.0%
TAATGCAAAAACTGGTTGCA+AGG - chr3.1:90148484-90148503 MS.gene014436:intron 35.0%
TACGGTTCAAATACTTTGGT+GGG + chr3.1:90145546-90145565 None:intergenic 35.0%
TAGACCTGAGTTAATTACTG+AGG - chr3.1:90146109-90146128 MS.gene014436:intron 35.0%
TATAACAGTGCTGTCATAGT+TGG - chr3.1:90148638-90148657 MS.gene014436:CDS 35.0%
TCAAATGGGTGGTTACATTA+AGG + chr3.1:90147920-90147939 None:intergenic 35.0%
TCTAGGAACAATTCTATGCA+AGG - chr3.1:90148602-90148621 MS.gene014436:CDS 35.0%
TGAAAAGGGGGTTACATTTA+GGG + chr3.1:90147955-90147974 None:intergenic 35.0%
TTGAAAAGGGGGTTACATTT+AGG + chr3.1:90147956-90147975 None:intergenic 35.0%
TTTATCAAAATCGATGTGGC+AGG - chr3.1:90146052-90146071 MS.gene014436:intron 35.0%
! AACTCCTTGATCTGTGATTT+TGG + chr3.1:90147537-90147556 None:intergenic 35.0%
! ATAACTGTTTTGCATGCTTG+AGG + chr3.1:90146259-90146278 None:intergenic 35.0%
! ATCTAGAGTAAGCTTCTTCA+AGG - chr3.1:90146838-90146857 MS.gene014436:CDS 35.0%
! CAACAAAATAAGTTGGAGAG+GGG - chr3.1:90145683-90145702 MS.gene014436:intron 35.0%
! GAGCATAATCTTCTCCATTT+TGG + chr3.1:90146439-90146458 None:intergenic 35.0%
! GGGAGTATAAATTCACATGT+AGG + chr3.1:90147891-90147910 None:intergenic 35.0%
!! CGGCGGATTTTCTATAATTT+TGG + chr3.1:90146898-90146917 None:intergenic 35.0%
!! CTTTCAAGTTCATATGGTTC+CGG - chr3.1:90146869-90146888 MS.gene014436:CDS 35.0%
!! TATTTTTGATCAATGGCACC+AGG + chr3.1:90145252-90145271 None:intergenic 35.0%
!!! ACTATCAGTTCTGCTTTTTG+TGG + chr3.1:90146960-90146979 None:intergenic 35.0%
!!! ATTTTCATAAAAAGTGCCCC+GGG + chr3.1:90147044-90147063 None:intergenic 35.0%
!!! CATGAAGTTTGGTTTTCCTA+TGG - chr3.1:90145776-90145795 MS.gene014436:intron 35.0%
AACGATCGTGACACTCTTTA+AGG + chr3.1:90147135-90147154 None:intergenic 40.0%
AAGTTTAGTCACCACGTCTT+CGG - chr3.1:90148670-90148689 MS.gene014436:CDS 40.0%
ACAGCACTGTTATATGTGCT+TGG + chr3.1:90148632-90148651 None:intergenic 40.0%
ACCAGAAAACTCATATGCTG+AGG + chr3.1:90148407-90148426 None:intergenic 40.0%
AGATCAAAAGGAGGATGTTG+TGG - chr3.1:90145114-90145133 MS.gene014436:CDS 40.0%
AGGATACGTTCACTTGTAAG+AGG + chr3.1:90146142-90146161 None:intergenic 40.0%
AGTAAGCTTCTTCAAGGCAA+AGG - chr3.1:90146844-90146863 MS.gene014436:CDS 40.0%
ATGAATGCATACCTGAGATC+TGG + chr3.1:90147464-90147483 None:intergenic 40.0%
CAAAAACTGGTTGCAAGGAT+GGG - chr3.1:90148489-90148508 MS.gene014436:intron 40.0%
CCGTAGCATGTGATTTGATT+TGG - chr3.1:90145561-90145580 MS.gene014436:intron 40.0%
CGGAACCATATGAACTTGAA+AGG + chr3.1:90146871-90146890 None:intergenic 40.0%
CGTTCCTCAGTAATTAACTC+AGG + chr3.1:90146116-90146135 None:intergenic 40.0%
CTACGGTTCAAATACTTTGG+TGG + chr3.1:90145547-90145566 None:intergenic 40.0%
CTTGCATTTCACAATGTGGT+TGG - chr3.1:90145357-90145376 MS.gene014436:CDS 40.0%
GAAAATGGGTCAGTTATTCC+GGG + chr3.1:90147616-90147635 None:intergenic 40.0%
GACCGTTAACCAACTAGAAT+GGG + chr3.1:90145623-90145642 None:intergenic 40.0%
GATACGTTCACTTGTAAGAG+GGG + chr3.1:90146140-90146159 None:intergenic 40.0%
GGATACGTTCACTTGTAAGA+GGG + chr3.1:90146141-90146160 None:intergenic 40.0%
GTAAGCTTCTTCAAGGCAAA+GGG - chr3.1:90146845-90146864 MS.gene014436:CDS 40.0%
TATTGAATCGGCAAGATCTC+TGG - chr3.1:90145466-90145485 MS.gene014436:intron 40.0%
TCGAAGATCTGATGGTTTGA+AGG + chr3.1:90147434-90147453 None:intergenic 40.0%
TGACCGTTAACCAACTAGAA+TGG + chr3.1:90145624-90145643 None:intergenic 40.0%
TGTCAATTAAATTGGGACGG+AGG - chr3.1:90147807-90147826 MS.gene014436:intron 40.0%
TGTTATTCATGTGATGCAGC+TGG - chr3.1:90145648-90145667 MS.gene014436:intron 40.0%
! AATAAGTTGGAGAGGGGATT+CGG - chr3.1:90145689-90145708 MS.gene014436:intron 40.0%
! ATATGGGGATGAGCTTTTGT+GGG - chr3.1:90146355-90146374 MS.gene014436:CDS 40.0%
! CAACCAGTTTTTGCATTAGC+AGG + chr3.1:90148482-90148501 None:intergenic 40.0%
! TCAGCATATGAGTTTTCTGG+TGG - chr3.1:90148406-90148425 MS.gene014436:intron 40.0%
! TCCTCAGCATATGAGTTTTC+TGG - chr3.1:90148403-90148422 MS.gene014436:intron 40.0%
! TGCCCATTCTAGTTGGTTAA+CGG - chr3.1:90145618-90145637 MS.gene014436:intron 40.0%
!! AAGGGCCTTTCAAGTTCATA+TGG - chr3.1:90146863-90146882 MS.gene014436:CDS 40.0%
!! AATCTTGTGCTGGTTCCAAT+TGG + chr3.1:90145866-90145885 None:intergenic 40.0%
!! ACTTTGGTGGGTTATTTAGG+CGG + chr3.1:90145534-90145553 None:intergenic 40.0%
!! ATGAGTTTTCTGGTGGGATA+TGG - chr3.1:90148413-90148432 MS.gene014436:intron 40.0%
!! CAGCATATGAGTTTTCTGGT+GGG - chr3.1:90148407-90148426 MS.gene014436:intron 40.0%
!! TCGTGGGCAATTCTAGAATA+TGG - chr3.1:90145819-90145838 MS.gene014436:intron 40.0%
!! TGCCGATTCAATATCCAGTT+CGG + chr3.1:90145459-90145478 None:intergenic 40.0%
!!! TTTTCATAAAAAGTGCCCCG+GGG + chr3.1:90147043-90147062 None:intergenic 40.0%
AACCAGCACAAGATTCTCTC+AGG - chr3.1:90145871-90145890 MS.gene014436:intron 45.0%
AAGACCACACATTACAGCCT+CGG + chr3.1:90146918-90146937 None:intergenic 45.0%
AAGTGCTCCAGTAGCTACAT+TGG + chr3.1:90148546-90148565 None:intergenic 45.0%
AATGGATGCTGTTGGCCAAT+TGG - chr3.1:90145848-90145867 MS.gene014436:intron 45.0%
AGCAATGGCATCAGCATCTT+TGG - chr3.1:90146196-90146215 MS.gene014436:intron 45.0%
AGCTACATTGGGATTCGGAT+CGG + chr3.1:90148534-90148553 None:intergenic 45.0%
AGCTCTTCATACCTGAGTTC+CGG + chr3.1:90146504-90146523 None:intergenic 45.0%
AGGAATCATCACCTGTAGCA+TGG + chr3.1:90146397-90146416 None:intergenic 45.0%
AGTGCTCCAGTAGCTACATT+GGG + chr3.1:90148545-90148564 None:intergenic 45.0%
ATCGTGGTTTCATCGCAGTT+TGG + chr3.1:90145507-90145526 None:intergenic 45.0%
ATGTTGCTGCCCATTCTAGT+TGG - chr3.1:90145611-90145630 MS.gene014436:intron 45.0%
CAAAAGGAGGATGTTGTGGT+TGG - chr3.1:90145118-90145137 MS.gene014436:CDS 45.0%
CAACACTTGTGATCTGCAAC+AGG + chr3.1:90146086-90146105 None:intergenic 45.0%
CCACAATTTGTGCATCACAG+GGG - chr3.1:90148446-90148465 MS.gene014436:intron 45.0%
CCAGTAGCTACATTGGGATT+CGG + chr3.1:90148539-90148558 None:intergenic 45.0%
CCCACAATTTGTGCATCACA+GGG - chr3.1:90148445-90148464 MS.gene014436:intron 45.0%
CCCTGTGATGCACAAATTGT+GGG + chr3.1:90148448-90148467 None:intergenic 45.0%
CTGTTGCAGATCACAAGTGT+TGG - chr3.1:90146084-90146103 MS.gene014436:intron 45.0%
GCAAAAACTGGTTGCAAGGA+TGG - chr3.1:90148488-90148507 MS.gene014436:intron 45.0%
GCAAAGGGGGGTTACATTAA+GGG - chr3.1:90148157-90148176 MS.gene014436:intron 45.0%
GCAAAGTCTCGAAGATCTGA+TGG + chr3.1:90147442-90147461 None:intergenic 45.0%
GCTAAGAATGCAGATGCAAC+AGG + chr3.1:90147349-90147368 None:intergenic 45.0%
GGAGATCAAATGGATGCTGT+TGG - chr3.1:90145840-90145859 MS.gene014436:intron 45.0%
GTCTGATATGGGTGAGTGAA+TGG - chr3.1:90147308-90147327 MS.gene014436:CDS 45.0%
GTCTGGAGGAACACAAACTA+TGG - chr3.1:90147209-90147228 MS.gene014436:intron 45.0%
TCAAAATCGATGTGGCAGGT+TGG - chr3.1:90146056-90146075 MS.gene014436:intron 45.0%
TCCCACAATTTGTGCATCAC+AGG - chr3.1:90148444-90148463 MS.gene014436:intron 45.0%
TCCTACCTTCAGTATGTGAC+TGG - chr3.1:90146413-90146432 MS.gene014436:CDS 45.0%
TCTCGTCAATGCTCATCCTT+CGG - chr3.1:90145908-90145927 MS.gene014436:intron 45.0%
TGCAAAGGGGGGTTACATTA+AGG - chr3.1:90148156-90148175 MS.gene014436:intron 45.0%
TGGGTGGTTACATTAAGGGA+CGG + chr3.1:90147915-90147934 None:intergenic 45.0%
TGGTTACATTAAGGGACGGA+GGG + chr3.1:90147911-90147930 None:intergenic 45.0%
TTATTTAGGCGGCTCAATCG+TGG + chr3.1:90145523-90145542 None:intergenic 45.0%
TTCAGCTGCAACATCTGATC+CGG + chr3.1:90146168-90146187 None:intergenic 45.0%
TTCCAGGCTGATTACGTGTT+GGG - chr3.1:90148374-90148393 MS.gene014436:intron 45.0%
TTTGGCCAGTCACATACTGA+AGG + chr3.1:90146421-90146440 None:intergenic 45.0%
! ACTTTTGCGGACAAGCATAG+AGG - chr3.1:90146281-90146300 MS.gene014436:intron 45.0%
! CAGTATGTGACTGGCCAAAA+TGG - chr3.1:90146422-90146441 MS.gene014436:CDS 45.0%
! GATATGGGGATGAGCTTTTG+TGG - chr3.1:90146354-90146373 MS.gene014436:CDS 45.0%
! TCCTATGGCTTTTACTGCCT+CGG - chr3.1:90145791-90145810 MS.gene014436:intron 45.0%
! TTTTGATCAATGGCACCAGG+AGG + chr3.1:90145249-90145268 None:intergenic 45.0%
!! GTTTGTGATTCTGGCTCTTG+TGG - chr3.1:90145149-90145168 MS.gene014436:CDS 45.0%
!! TTTCATAAAAAGTGCCCCGG+GGG + chr3.1:90147042-90147061 None:intergenic 45.0%
!!! GTTCTGCTTTTTGTGGCTGT+TGG + chr3.1:90146953-90146972 None:intergenic 45.0%
AAACTGGTTGCAAGGATGGG+TGG - chr3.1:90148492-90148511 MS.gene014436:intron 50.0%
AAATGCTAATGAGTGCCCCC+GGG - chr3.1:90147024-90147043 MS.gene014436:intron 50.0%
AAGCCCAACCTGGTTCAGTT+GGG - chr3.1:90146466-90146485 MS.gene014436:CDS 50.0%
AATTAGTACTCCCTCCGTCC+CGG - chr3.1:90147595-90147614 MS.gene014436:CDS 50.0%
ACCGAGGCAGTAAAAGCCAT+AGG + chr3.1:90145795-90145814 None:intergenic 50.0%
AGCTGAAACTGCAGCAGCAA+TGG - chr3.1:90146181-90146200 MS.gene014436:intron 50.0%
AGGGGGGTTACATTAAGGGA+CGG - chr3.1:90148161-90148180 MS.gene014436:intron 50.0%
AGTTGGGACAACAAGCTTGC+CGG - chr3.1:90146482-90146501 MS.gene014436:CDS 50.0%
ATGGGTCAGTTATTCCGGGA+CGG + chr3.1:90147612-90147631 None:intergenic 50.0%
CAAGTGAACGTATCCTGTCC+CGG - chr3.1:90146146-90146165 MS.gene014436:intron 50.0%
CACCTGAGAGAATCTTGTGC+TGG + chr3.1:90145876-90145895 None:intergenic 50.0%
CAGCACAAGATTCTCTCAGG+TGG - chr3.1:90145874-90145893 MS.gene014436:intron 50.0%
CCCCTGTGATGCACAAATTG+TGG + chr3.1:90148449-90148468 None:intergenic 50.0%
CCGAATCCCAATGTAGCTAC+TGG - chr3.1:90148536-90148555 MS.gene014436:CDS 50.0%
CTCAATTTGGAAGCCCAACC+TGG - chr3.1:90146456-90146475 MS.gene014436:CDS 50.0%
CTTCCAGGCTGATTACGTGT+TGG - chr3.1:90148373-90148392 MS.gene014436:intron 50.0%
GAAATGCTAATGAGTGCCCC+CGG - chr3.1:90147023-90147042 MS.gene014436:intron 50.0%
GCCAGTCACATACTGAAGGT+AGG + chr3.1:90146417-90146436 None:intergenic 50.0%
GCTGGGGATCACATGAAGTT+TGG - chr3.1:90145765-90145784 MS.gene014436:intron 50.0%
GGGTTACATTAAGGGACGGA+GGG - chr3.1:90148165-90148184 MS.gene014436:intron 50.0%
GTGGTTACATTAAGGGACGG+AGG + chr3.1:90147912-90147931 None:intergenic 50.0%
TCAGCTGCAACATCTGATCC+GGG + chr3.1:90146167-90146186 None:intergenic 50.0%
TCGAGACTTTGCCAGATCTC+AGG - chr3.1:90147450-90147469 MS.gene014436:CDS 50.0%
TCGGCAAGATCTCTGGATCA+TGG - chr3.1:90145473-90145492 MS.gene014436:intron 50.0%
TGTCCCAACTGAACCAGGTT+GGG + chr3.1:90146472-90146491 None:intergenic 50.0%
TTGTCCCAACTGAACCAGGT+TGG + chr3.1:90146473-90146492 None:intergenic 50.0%
TTTGTGGCTGTTGGAGAGTC+TGG + chr3.1:90146944-90146963 None:intergenic 50.0%
! CTTGTTGTCCCAACTGAACC+AGG + chr3.1:90146477-90146496 None:intergenic 50.0%
! GTAGCTACTGGAGCACTTGT+TGG - chr3.1:90148548-90148567 MS.gene014436:CDS 50.0%
!! GTGATTCTGGCTCTTGTGGT+CGG - chr3.1:90145153-90145172 MS.gene014436:CDS 50.0%
AATGCTAATGAGTGCCCCCG+GGG - chr3.1:90147025-90147044 MS.gene014436:intron 55.0%
AATTGCCCACGATAGCACCG+AGG + chr3.1:90145811-90145830 None:intergenic 55.0%
ACCACACATTACAGCCTCGG+CGG + chr3.1:90146915-90146934 None:intergenic 55.0%
ACCTGTAGCATGGTAGAGCC+AGG + chr3.1:90146387-90146406 None:intergenic 55.0%
ATCAATGGCACCAGGAGGAC+CGG + chr3.1:90145244-90145263 None:intergenic 55.0%
CAACAAGCTTGCCGGAACTC+AGG - chr3.1:90146490-90146509 MS.gene014436:intron 55.0%
GAAGCCCAACCTGGTTCAGT+TGG - chr3.1:90146465-90146484 MS.gene014436:CDS 55.0%
GAGAGGGGATTCGGCTCTTA+AGG - chr3.1:90145698-90145717 MS.gene014436:intron 55.0%
GGGGATTCGGCTCTTAAGGA+TGG - chr3.1:90145702-90145721 MS.gene014436:intron 55.0%
GGGGTTACATTAAGGGACGG+AGG - chr3.1:90148164-90148183 MS.gene014436:intron 55.0%
GTCAGTTATTCCGGGACGGA+GGG + chr3.1:90147608-90147627 None:intergenic 55.0%
TGCAACATCTGATCCGGGAC+AGG + chr3.1:90146162-90146181 None:intergenic 55.0%
TGCCCAACACGTAATCAGCC+TGG + chr3.1:90148379-90148398 None:intergenic 55.0%
! AGCTTTTGTGGGCAGCTACC+TGG - chr3.1:90146366-90146385 MS.gene014436:CDS 55.0%
! GATAAACCCGAACCGGTTCC+CGG - chr3.1:90145222-90145241 MS.gene014436:CDS 55.0%
! GCTACTGGAGCACTTGTTGG+TGG - chr3.1:90148551-90148570 MS.gene014436:CDS 55.0%
!! ACCTGGCTCTACCATGCTAC+AGG - chr3.1:90146383-90146402 MS.gene014436:CDS 55.0%
!! TACTGCCTCGGTGCTATCGT+GGG - chr3.1:90145803-90145822 MS.gene014436:intron 55.0%
!! TTACTGCCTCGGTGCTATCG+TGG - chr3.1:90145802-90145821 MS.gene014436:intron 55.0%
GGATTGAAGGGCCGAAGACG+TGG + chr3.1:90148684-90148703 None:intergenic 60.0%
GGTCAGTTATTCCGGGACGG+AGG + chr3.1:90147609-90147628 None:intergenic 60.0%
GTTGCAAGGATGGGTGGCAG+TGG - chr3.1:90148498-90148517 MS.gene014436:CDS 60.0%
TCAATGGCACCAGGAGGACC+GGG + chr3.1:90145243-90145262 None:intergenic 60.0%
TCCGCCGAGGCTGTAATGTG+TGG - chr3.1:90146911-90146930 MS.gene014436:CDS 60.0%
AGGAGGACCGGGAACCGGTT+CGG + chr3.1:90145232-90145251 None:intergenic 65.0%
GCACCAGGAGGACCGGGAAC+CGG + chr3.1:90145237-90145256 None:intergenic 70.0%
! GAACCGGTTCCCGGTCCTCC+TGG - chr3.1:90145231-90145250 MS.gene014436:CDS 70.0%
! GGAGGACCGGGAACCGGTTC+GGG + chr3.1:90145231-90145250 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 90145099 90148712 90145099 ID=MS.gene014436
chr3.1 mRNA 90145099 90148712 90145099 ID=MS.gene014436.t1;Parent=MS.gene014436
chr3.1 exon 90148493 90148712 90148493 ID=MS.gene014436.t1.exon1;Parent=MS.gene014436.t1
chr3.1 CDS 90148493 90148712 90148493 ID=cds.MS.gene014436.t1;Parent=MS.gene014436.t1
chr3.1 exon 90147861 90148144 90147861 ID=MS.gene014436.t1.exon2;Parent=MS.gene014436.t1
chr3.1 CDS 90147861 90148144 90147861 ID=cds.MS.gene014436.t1;Parent=MS.gene014436.t1
chr3.1 exon 90147300 90147737 90147300 ID=MS.gene014436.t1.exon3;Parent=MS.gene014436.t1
chr3.1 CDS 90147300 90147737 90147300 ID=cds.MS.gene014436.t1;Parent=MS.gene014436.t1
chr3.1 exon 90146834 90146981 90146834 ID=MS.gene014436.t1.exon4;Parent=MS.gene014436.t1
chr3.1 CDS 90146834 90146981 90146834 ID=cds.MS.gene014436.t1;Parent=MS.gene014436.t1
chr3.1 exon 90146340 90146506 90146340 ID=MS.gene014436.t1.exon5;Parent=MS.gene014436.t1
chr3.1 CDS 90146340 90146506 90146340 ID=cds.MS.gene014436.t1;Parent=MS.gene014436.t1
chr3.1 exon 90145099 90145431 90145099 ID=MS.gene014436.t1.exon6;Parent=MS.gene014436.t1
chr3.1 CDS 90145099 90145431 90145099 ID=cds.MS.gene014436.t1;Parent=MS.gene014436.t1
Gene Sequence

>MS.gene014436

ATGAGAGAAAAATCGAGATCAAAAGGAGGATGTTGTGGTTGGTTTATTGCGTTTGTGATTCTGGCTCTTGTGGTCGGTGCTATTGTTTATGCTGTTAAGAAGAAAATCGATAACTCAAATTCAGATAAACCCGAACCGGTTCCCGGTCCTCCTGGTGCCATTGATCAAAAATATGCTTCTGCTCTCAAAACTGCAATGCAATTCTTCGACGTGCAAAAATGTAATAATCCTTTTTTTCATTCTCGGTTACCTTTATTTCTTGCATTTCACAATGTGGTTGGTTTATTATAGGAAGATATTAGATAGTTATTTATTATTATTATTGCATTGATGTTTTTTCGCGTAATGTTTTAAAAACCGAACTGGATATTGAATCGGCAAGATCTCTGGATCATGGTTCAACTGCCAAACTGCGATGAAACCACGATTGAGCCGCCTAAATAACCCACCAAAGTATTTGAACCGTAGCATGTGATTTGATTTGGTTTTGAAAACATTGTTTTGGCATGTCAATGTTGCTGCCCATTCTAGTTGGTTAACGGTCATGTTTGTTATTCATGTGATGCAGCTGGCAAGTTAGAGAACAACAAAATAAGTTGGAGAGGGGATTCGGCTCTTAAGGATGGAAAGCAAGCAGATTTAGATCTAACAAAAGGAATGTATGATGCTGGGGATCACATGAAGTTTGGTTTTCCTATGGCTTTTACTGCCTCGGTGCTATCGTGGGCAATTCTAGAATATGGAGATCAAATGGATGCTGTTGGCCAATTGGAACCAGCACAAGATTCTCTCAGGTGGATCACTGATTTTCTCGTCAATGCTCATCCTTCGGAGAATGTTCTGTATATTCAGGTTAGTTGGTCTGAAAACACAAACTGTTAAGCTGACAGTTGATCAAATGTAAAATATAACTACATTGATGTTTTTCTAGAATTTGTTTCTATCTAGTTTCATTTATCAAAATCGATGTGGCAGGTTGGTGATCCTGTTGCAGATCACAAGTGTTGGAATAGACCTGAGTTAATTACTGAGGAACGACCCCTCTTACAAGTGAACGTATCCTGTCCCGGATCAGATGTTGCAGCTGAAACTGCAGCAGCAATGGCATCAGCATCTTTGGTCTTCAAAAAGTCAGATGCTACATATTCAAGCACTCTCCTCAAGCATGCAAAACAGTTATTTACTTTTGCGGACAAGCATAGAGGAATTTACAGTGAGAATATACCTGAAGTTGCGACATATTATAACTCAACTGGATATGGGGATGAGCTTTTGTGGGCAGCTACCTGGCTCTACCATGCTACAGGTGATGATTCCTACCTTCAGTATGTGACTGGCCAAAATGGAGAAGATTATGCTCAATTTGGAAGCCCAACCTGGTTCAGTTGGGACAACAAGCTTGCCGGAACTCAGGTATGAAGAGCTGCCGAATCTTGTTTACAAATTCTAAACTAGGATCATTTTATAGCTGAAGACAATCATTAGTTATACTAACGTTGTTTGCTACCGAAGTGTTTTTTTTTATATATATTTTATTGCAACCTACACATTACATAGAATAGACTCAATCAAGCCTTATGGCATTATCTTATCCTAAATGATACTTCTACTTACTTTATTACAAACTTTGCAATGCTTTCATGTATATACTAGGGGATACTTCTACTTATCTTAGATGTTACATCTACTTACTTTATTACAAAGCTTTAATAATCCTTCTTCTTAATGCAGGTTTTGTTATCTAGAGTAAGCTTCTTCAAGGCAAAGGGCCTTTCAAGTTCATATGGTTCCGGCCTCCAAAATTATAGAAAATCCGCCGAGGCTGTAATGTGTGGTCTTCTTCCAGACTCTCCAACAGCCACAAAAAGCAGAACTGATAGTAATGTTCTCCTTGAATGCTATCTGACTTGATATTAACTAATGGGAAATGCTAATGAGTGCCCCCGGGGCACTTTTTATGAAAATTTGTGTATTCAATGCATTGGAAATTGAAGTATTTGAATTTTTTAAATAATAATTTCTTAATTTAGAATCCTTAAAGAGTGTCACGATCGTTAGCAAGACCCTTAACTTATAATCTGATTAGCATGCTGAATAGTTTTATTAGATAGTCTGGAGGAACACAAACTATGGAAATTCCATTTTTAGTAATATATTTCTACTGCAATACGTTGTCTAATTTCATTTTTCTTTTTCTTTTATATAGATGGTCTGATATGGGTGAGTGAATGGAACGCTTTGCAGCATCCTGTTGCATCTGCATTCTTAGCTTCTGTTTACAGTGACTATATGCTTACAACGCAGACTCCCAATATAAAATGTGATTCAGATTCCTTCAAACCATCAGATCTTCGAGACTTTGCCAGATCTCAGGTATGCATTCATTATTATTTTTGTAGAATACTCTCTCTGGCCCTTAATATAAGAAGAATTTACCAAAATCACAGATCAAGGAGTTGTATTTTTTTTTTTTGGTACAGATCAAGGAGCTTATTTAATTAGTACTCCCTCCGTCCCGGAATAACTGACCCATTTTCTAAAAAAAAGTGTCCCAAAATAACTGACCCATTTCAATTTTCAATACAACTTTCATCATTCTCAATACAATATAACACTAAATAATACTACTTTTATCATTCCCAATACAATATATTCCATTTTCCCCTTTATTTATACATTTTTCTTAATATGTGTGAAAAACAAAATTGTGTCAATTAAATTGGGACGGAGGTAGTATAAAATTGAGTGGTTATTGTTCCAATTAAATCAATAACATTAAATGTTTTATACCTACATGTGAATTTATACTCCCTCCGTCCCTTAATGTAACCACCCATTTGATTTTATTTTTGTCCCTAAATGTAACCCCCTTTTCAAATTACTAGATGCATTTATTACTTTTTTCCTAAACATACCCCTAATTAATACTACTAACTTATCTTGAAATATGAAAAGTCAAATTTAATACACATACAAACAAAGGACAATTTGGTAATATTAATACACAAAACAGACACATTAATTACACTGACAACTTTTCTTAAGAAATGTGAAAAATGCAAAGGGGGGTTACATTAAGGGACGGAGGGAGTACTAAACATTTATCTGACATTAAATAAAGGGTGTAAAAAGCATTTTAGCAATTAATGCACATTGAAATGAATTTCTTTTTCTTATAATAAAGACCAAAAAATACGCACAATTTCTTATAATAGGGATCAGAGATAGTATCGGCTTGAAATTATCTGCAACTAACTTGAAAACTTGTCTAATACTTCCAGGCTGATTACGTGTTGGGCAAGAATCCTCAGCATATGAGTTTTCTGGTGGGATATGGAAAGAATTTCCCACAATTTGTGCATCACAGGGGAGCTTCAATTCCTGCTAATGCAAAAACTGGTTGCAAGGATGGGTGGCAGTGGCTTGACTCATCCGATCCGAATCCCAATGTAGCTACTGGAGCACTTGTTGGTGGACCTTTCTTAAATGAGACTTACATTGATTCTAGGAACAATTCTATGCAAGGAGAACCAAGCACATATAACAGTGCTGTCATAGTTGGTCTCTTATCAAGTTTAGTCACCACGTCTTCGGCCCTTCAATCCTTCTCCTAA
Protein sequence

>MS.gene014436.t1

MREKSRSKGGCCGWFIAFVILALVVGAIVYAVKKKIDNSNSDKPEPVPGPPGAIDQKYASALKTAMQFFDVQKSGKLENNKISWRGDSALKDGKQADLDLTKGMYDAGDHMKFGFPMAFTASVLSWAILEYGDQMDAVGQLEPAQDSLRWITDFLVNAHPSENVLYIQVGDPVADHKCWNRPELITEERPLLQVNVSCPGSDVAAETAAAMASASLVFKKSDATYSSTLLKHAKQLFTFADKHRGIYSENIPEVATYYNSTGYGDELLWAATWLYHATGDDSYLQYVTGQNGEDYAQFGSPTWFSWDNKLAGTQVLLSRVSFFKAKGLSSSYGSGLQNYRKSAEAVMCGLLPDSPTATKSRTDNGLIWVSEWNALQHPVASAFLASVYSDYMLTTQTPNIKCDSDSFKPSDLRDFARSQADYVLGKNPQHMSFLVGYGKNFPQFVHHRGASIPANAKTGCKDGWQWLDSSDPNPNVATGALVGGPFLNETYIDSRNNSMQGEPSTYNSAVIVGLLSSLVTTSSALQSFS