AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene21635


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene21635.t1 MTR_5g010000 94.639 485 25 1 1 484 16 500 0.0 900
MS.gene21635.t1 MTR_5g009970 85.474 475 68 1 5 478 21 495 0.0 819
MS.gene21635.t1 MTR_5g009970 85.956 413 57 1 67 478 9 421 0.0 716
MS.gene21635.t1 MTR_5g009970 85.533 394 56 1 86 478 1 394 0.0 678
MS.gene21635.t1 MTR_5g009970 85.583 326 46 1 154 478 1 326 0.0 550
MS.gene21635.t1 MTR_3g080810 54.310 464 199 6 25 478 35 495 3.47e-176 511
MS.gene21635.t1 MTR_3g117500 50.740 473 220 5 16 477 15 485 4.27e-165 482
MS.gene21635.t1 MTR_8g104820 49.679 467 218 8 21 474 26 488 1.49e-161 473
MS.gene21635.t1 MTR_5g085730 48.643 479 226 7 16 477 22 497 3.01e-159 468
MS.gene21635.t1 MTR_3g010330 50.000 468 222 7 19 478 19 482 2.00e-157 462
MS.gene21635.t1 MTR_3g080190 48.734 474 223 7 21 477 36 506 5.44e-156 460
MS.gene21635.t1 MTR_3g105230 47.865 445 228 4 23 466 28 469 3.49e-154 454
MS.gene21635.t1 MTR_5g093590 49.149 470 220 8 24 476 33 500 1.29e-153 453
MS.gene21635.t1 MTR_3g023740 48.678 454 229 4 24 476 29 479 1.39e-152 450
MS.gene21635.t1 MTR_4g035955 48.387 465 231 4 15 474 4 464 1.98e-152 449
MS.gene21635.t1 MTR_8g099410 48.632 475 224 7 21 479 24 494 2.14e-152 451
MS.gene21635.t1 MTR_1g088190 49.138 464 206 6 22 476 36 478 5.26e-152 449
MS.gene21635.t1 MTR_8g099410 48.632 475 224 7 21 479 24 494 7.83e-151 451
MS.gene21635.t1 MTR_4g035930 47.912 455 228 4 25 474 15 465 4.44e-150 443
MS.gene21635.t1 MTR_4g074960 46.906 501 235 10 24 497 27 523 6.04e-149 446
MS.gene21635.t1 MTR_4g035975 47.210 466 227 7 24 474 26 487 2.07e-146 434
MS.gene21635.t1 MTR_1g037340 48.261 460 227 6 25 476 25 481 1.25e-141 422
MS.gene21635.t1 MTR_3g113720 43.487 476 249 6 26 486 58 528 1.17e-130 395
MS.gene21635.t1 MTR_5g010010 99.451 182 1 0 478 659 52 233 1.22e-128 379
MS.gene21635.t1 MTR_8g075990 44.872 468 238 6 26 478 64 526 8.32e-127 385
MS.gene21635.t1 MTR_2g028480 39.921 506 253 13 25 493 111 602 4.00e-100 319
MS.gene21635.t1 MTR_3g090540 37.832 489 255 15 25 476 107 583 1.62e-97 311
MS.gene21635.t1 MTR_3g082440 37.649 502 267 14 25 493 116 604 3.53e-93 301
MS.gene21635.t1 MTR_1g088190 48.693 306 128 5 22 318 36 321 4.85e-86 273
MS.gene21635.t1 MTR_7g108925 47.134 157 82 1 320 476 43 198 1.43e-48 170
MS.gene21635.t1 MTR_0393s0050 48.649 148 74 2 320 466 20 166 3.48e-41 148
MS.gene21635.t1 MTR_1g037320 48.447 161 78 2 86 242 1 160 1.47e-39 147
MS.gene21635.t1 MTR_1g037320 50.820 122 58 2 354 474 169 289 4.85e-31 123
MS.gene21635.t1 MTR_4g128810 38.690 168 100 1 329 496 189 353 1.31e-32 129
MS.gene21635.t1 MTR_7g053480 75.000 44 11 0 479 522 53 96 2.76e-14 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene21635.t1 AT4G23560 69.792 480 143 1 1 480 1 478 0.0 681
MS.gene21635.t1 AT4G09740 68.542 480 149 1 1 480 1 478 0.0 671
MS.gene21635.t1 AT1G02800 54.644 463 196 6 23 476 41 498 2.09e-175 509
MS.gene21635.t1 AT4G02290 51.732 462 211 5 22 474 49 507 1.36e-168 492
MS.gene21635.t1 AT1G23210 51.178 467 214 6 15 471 18 480 6.32e-168 489
MS.gene21635.t1 AT1G70710 51.522 460 211 5 21 471 24 480 4.63e-167 487
MS.gene21635.t1 AT4G39010 50.625 480 221 7 18 485 22 497 5.13e-166 485
MS.gene21635.t1 AT1G71380 49.895 475 227 6 7 474 6 476 5.52e-156 459
MS.gene21635.t1 AT3G43860 49.561 456 226 4 25 479 34 486 2.12e-153 452
MS.gene21635.t1 AT3G43860 49.561 456 226 4 25 479 34 486 2.12e-153 452
MS.gene21635.t1 AT1G22880 49.894 471 225 6 19 482 18 484 4.51e-153 451
MS.gene21635.t1 AT2G32990 47.210 466 230 7 24 474 38 502 2.59e-151 448
MS.gene21635.t1 AT4G11050 46.371 496 243 8 22 501 23 511 4.91e-151 448
MS.gene21635.t1 AT4G11050 46.371 496 243 8 22 501 23 511 5.61e-150 448
MS.gene21635.t1 AT4G11050 46.371 496 243 8 22 501 23 511 5.78e-150 448
MS.gene21635.t1 AT1G64390 45.000 500 251 9 22 504 22 514 3.98e-147 441
MS.gene21635.t1 AT4G39000 47.312 465 227 7 24 474 24 484 2.69e-146 434
MS.gene21635.t1 AT1G48930 50.538 465 214 6 24 474 29 491 3.09e-145 436
MS.gene21635.t1 AT4G38990 46.497 471 235 6 20 474 18 487 2.01e-144 429
MS.gene21635.t1 AT2G44570 48.498 466 227 7 21 476 29 491 5.74e-144 428
MS.gene21635.t1 AT2G44540 48.268 462 227 6 25 477 33 491 3.45e-142 424
MS.gene21635.t1 AT2G44560 48.807 461 224 6 25 476 33 490 7.34e-141 420
MS.gene21635.t1 AT2G44550 46.751 477 233 9 11 477 25 490 3.77e-138 413
MS.gene21635.t1 AT1G19940 46.288 458 230 5 25 471 48 500 3.76e-134 404
MS.gene21635.t1 AT1G19940 46.288 458 230 5 25 471 48 500 3.76e-134 404
MS.gene21635.t1 AT4G02290 48.744 398 192 5 86 474 1 395 1.01e-131 394
MS.gene21635.t1 AT1G75680 47.033 455 221 7 26 467 58 505 1.43e-130 395
MS.gene21635.t1 AT1G22880 48.267 404 198 6 86 482 1 400 1.71e-124 375
MS.gene21635.t1 AT4G39010 48.098 368 177 6 18 373 22 387 1.96e-117 356
MS.gene21635.t1 AT2G44570 45.503 378 194 6 21 389 29 403 8.68e-102 317
MS.gene21635.t1 AT1G63970 83.237 173 29 0 487 659 59 231 4.06e-101 308
MS.gene21635.t1 AT5G49720 39.406 505 259 13 25 493 108 601 4.84e-97 311
MS.gene21635.t1 AT1G19940 44.875 361 187 4 25 374 48 407 5.67e-96 302
MS.gene21635.t1 AT4G24260 39.029 515 263 15 25 501 108 609 6.22e-93 300
MS.gene21635.t1 AT1G22880 50.162 309 144 5 19 320 18 323 3.71e-90 284
MS.gene21635.t1 AT1G65610 35.729 501 273 15 25 491 116 601 9.96e-90 292
MS.gene21635.t1 AT4G38990 43.023 344 172 5 20 358 18 342 1.39e-83 267
MS.gene21635.t1 AT4G24260 37.209 387 200 12 25 374 108 488 3.63e-56 199
MS.gene21635.t1 AT1G63970 81.818 99 18 0 487 585 59 157 1.80e-55 186
MS.gene21635.t1 AT4G24260 39.748 317 152 10 25 306 108 420 1.81e-51 185
MS.gene21635.t1 AT3G42153 59.783 92 33 1 231 318 16 107 1.33e-30 116

Find 155 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTGGTTATCCTTTAATTAT+TGG 0.154047 5.2:-3371614 MS.gene21635:CDS
CTCCCCTCCACTTCACTCTT+TGG 0.212758 5.2:+3375820 None:intergenic
TGTTATTTGTCATGGGTAAA+TGG 0.220078 5.2:-3375974 None:intergenic
TTAATTCCACCAATAATTAA+AGG 0.221109 5.2:+3371605 None:intergenic
ATGTCATATATGGTGGGATA+TGG 0.234184 5.2:-3373892 MS.gene21635:CDS
ATGAAAAGGATGAACTATTA+TGG 0.237262 5.2:-3374689 MS.gene21635:intron
CCAGAGTACGAGCAGTAAAA+TGG 0.238707 5.2:+3374814 None:intergenic
TCAGCTGCAGCCTCAGTTCC+AGG 0.244152 5.2:+3375204 None:intergenic
AACTATTATGGGCTGCTTCT+TGG 0.270350 5.2:-3374677 MS.gene21635:CDS
AATGAATTCATCATCCATTA+TGG 0.281543 5.2:+3375938 None:intergenic
TTGTATTGGTCATTAGAATT+TGG 0.289530 5.2:+3373718 None:intergenic
CTGCTCGTACTCTGGTTATC+AGG 0.293044 5.2:-3374806 MS.gene21635:intron
TCAATCTTGTAAGTTGTTCT+TGG 0.295072 5.2:+3375237 None:intergenic
CGCTTCTGTGGTAAATATAA+AGG 0.303097 5.2:-3368501 MS.gene21635:CDS
CCTCTGTGATGTAATTGTTT+TGG 0.305598 5.2:+3373859 None:intergenic
ATCTGTAGAGAGCTACTTCC+TGG 0.319200 5.2:+3374332 None:intergenic
TTCTTTCTCAAGGAATTCTA+TGG 0.326275 5.2:-3374416 MS.gene21635:intron
CTTGGTGTATCCATGTCTTC+TGG 0.334811 5.2:+3375255 None:intergenic
ACATAGGTGGACTACATATT+AGG 0.343969 5.2:-3373931 MS.gene21635:intron
TCCCATGAAGATGTCATATA+TGG 0.345180 5.2:-3373902 MS.gene21635:CDS
ATAGCACCCACATGAATATT+AGG 0.348295 5.2:+3373751 None:intergenic
CATGAGGCAGGTTATGATAT+TGG 0.350566 5.2:-3368617 MS.gene21635:CDS
TCTCCGCAGTGCTATTCGTT+GGG 0.353825 5.2:-3375493 MS.gene21635:CDS
GTGTCATTGACAGGTGGATT+TGG 0.381586 5.2:-3375643 MS.gene21635:intron
GCTTTAGGTCTTCCTGATAT+AGG 0.382227 5.2:-3370581 MS.gene21635:CDS
AGCTGGGATAACAAATTTGT+TGG 0.384877 5.2:-3374573 MS.gene21635:CDS
TCCTTGTGTGGGCTTAGTTT+CGG 0.392429 5.2:+3368563 None:intergenic
CAGATCTTGCATCATTGTAT+TGG 0.398459 5.2:+3373704 None:intergenic
TTGAAGGAGTAGCTGAGATT+GGG 0.399469 5.2:+3371687 None:intergenic
GAATGGATTATTAGCCATAA+TGG 0.408259 5.2:-3375952 MS.gene21635:CDS
GGTTCTGTTGCAGCTTTGCT+TGG 0.409254 5.2:-3373634 MS.gene21635:intron
CACCATATATGACATCTTCA+TGG 0.409652 5.2:+3373900 None:intergenic
TTCGGCATCAGTCTTAATCT+TGG 0.416022 5.2:+3374376 None:intergenic
TTTGAAGGAGTAGCTGAGAT+TGG 0.416166 5.2:+3371686 None:intergenic
TCATTGCACCCCACTTTGGC+AGG 0.417272 5.2:+3373808 None:intergenic
GTCGATTTCAATTGAGGTTG+TGG 0.427587 5.2:+3371715 None:intergenic
CACTTCACTCTTTGGTCCTT+AGG 0.430996 5.2:+3375828 None:intergenic
CATTGACAGGTGGATTTGGT+TGG 0.432163 5.2:-3375639 MS.gene21635:intron
GCGGGTGATAATGTGAAGTT+TGG 0.441792 5.2:-3375603 MS.gene21635:CDS
GGATTTGTCGATTTCAATTG+AGG 0.442600 5.2:+3371709 None:intergenic
GTGGAAGGGTTGTGATTCTT+CGG 0.447373 5.2:-3370531 MS.gene21635:CDS
TGACAGGTGGATTTGGTTGG+AGG 0.452191 5.2:-3375636 MS.gene21635:intron
ATCTCCGCAGTGCTATTCGT+TGG 0.455043 5.2:-3375494 MS.gene21635:CDS
TGAAAAGGATGAACTATTAT+GGG 0.456313 5.2:-3374688 MS.gene21635:intron
GGTTATCCTTTAATTATTGG+TGG 0.460157 5.2:-3371611 MS.gene21635:CDS
AGAATATACTCACAGATTCA+TGG 0.463953 5.2:+3370501 None:intergenic
ATTCATGTGGGTGCTATTGT+TGG 0.466637 5.2:-3373745 MS.gene21635:CDS
AAGCAGTGTCTGAATTCAGC+TGG 0.468104 5.2:-3374590 MS.gene21635:CDS
CATGAAAAGGTTGATAGCCT+TGG 0.468863 5.2:-3368470 MS.gene21635:CDS
GAAACGCAGATCATAATTGT+TGG 0.470658 5.2:-3375284 MS.gene21635:CDS
TAGATGAAGAGAAATAGTTC+TGG 0.473162 5.2:+3373782 None:intergenic
TTTGTCATGGGTAAATGGAA+TGG 0.474409 5.2:-3375969 None:intergenic
CCCACACAAGGATGCTATCA+AGG 0.475088 5.2:-3368552 MS.gene21635:CDS
TCGATTTCAATTGAGGTTGT+GGG 0.478553 5.2:+3371716 None:intergenic
GCCATCATTGCACCCCACTT+TGG 0.479110 5.2:+3373804 None:intergenic
TTGAGATATGATTGAAGGGA+TGG 0.481296 5.2:+3373831 None:intergenic
TTACGGTGAGCTTGTTGAGT+TGG 0.481846 5.2:-3375566 MS.gene21635:CDS
GCCAAAGTGGGGTGCAATGA+TGG 0.482616 5.2:-3373805 MS.gene21635:CDS
GCAGGTTGAGATATGATTGA+AGG 0.483094 5.2:+3373826 None:intergenic
AAACCATGGCCAACCCGAAA+AGG 0.483370 5.2:+3371656 None:intergenic
TGCAAAGGCTCTAATTTCAG+AGG 0.483766 5.2:+3374038 None:intergenic
GCCTTGATAGCATCCTTGTG+TGG 0.485497 5.2:+3368551 None:intergenic
TCCAAGCAGTGCAGATAAGT+TGG 0.486196 5.2:+3368529 None:intergenic
TGTCATATATGGTGGGATAT+GGG 0.492325 5.2:-3373891 MS.gene21635:CDS
CAGAGTACGAGCAGTAAAAT+GGG 0.494790 5.2:+3374815 None:intergenic
TGGAACTGAGGCTGCAGCTG+AGG 0.495266 5.2:-3375202 MS.gene21635:CDS
TTCCACTTAGGATCAGAATC+AGG 0.496430 5.2:+3370548 None:intergenic
ATATGAAAGTGAGATTTCTT+CGG 0.496777 5.2:-3375532 MS.gene21635:CDS
CAATGCACATATAAACGATT+CGG 0.497345 5.2:+3374358 None:intergenic
GACCTTCATCGATTGGAACC+TGG 0.499572 5.2:-3371632 MS.gene21635:CDS
AACAAAAGCAGCATTCATAT+AGG 0.500246 5.2:+3373657 None:intergenic
AAGATTGATTCGAATTCCCC+TGG 0.503739 5.2:-3375222 MS.gene21635:CDS
ACACTGCTTGACTCCAACCT+TGG 0.505167 5.2:+3374604 None:intergenic
CCTTGATAGCATCCTTGTGT+GGG 0.507271 5.2:+3368552 None:intergenic
CGAAAAGGAAGAACCTTTGA+AGG 0.510185 5.2:+3371671 None:intergenic
GGAATTCTATGGCGGGAAGA+AGG 0.510525 5.2:-3374405 MS.gene21635:CDS
ATTAATATACCTCATGATAG+AGG 0.512773 5.2:-3371587 MS.gene21635:CDS
GCCAACTTATCTGCACTGCT+TGG 0.513880 5.2:-3368530 MS.gene21635:CDS
TTTATATGTGCATTGATGCC+AGG 0.514115 5.2:-3374350 MS.gene21635:CDS
CAGCTGCAGCCTCAGTTCCA+GGG 0.523289 5.2:+3375205 None:intergenic
GGCTGCTTCTTGGCTATACA+AGG 0.523550 5.2:-3374667 MS.gene21635:CDS
AAACGCAGATCATAATTGTT+GGG 0.523983 5.2:-3375283 MS.gene21635:CDS
CATGTGGGTGCTATTGTTGG+AGG 0.529821 5.2:-3373742 MS.gene21635:CDS
CAAATATAGAGGTTCTTACT+CGG 0.533103 5.2:-3374845 MS.gene21635:CDS
GTTGGAGGATACTACGACGC+GGG 0.534176 5.2:-3375621 MS.gene21635:CDS
TTCCTGATTCTGATCCTAAG+TGG 0.534340 5.2:-3370550 MS.gene21635:CDS
CTACAGATTAAAACAACTCC+TGG 0.534503 5.2:-3374317 MS.gene21635:intron
TAGAGCCTTTGCAAAATCAC+AGG 0.537879 5.2:-3374028 MS.gene21635:intron
ACCTGTGTAAAGAGCGTGGT+TGG 0.539161 5.2:+3375438 None:intergenic
TGCAAATCCTAATATTCATG+TGG 0.539708 5.2:-3373758 MS.gene21635:CDS
CATATCTCAACCTGCCAAAG+TGG 0.541021 5.2:-3373818 MS.gene21635:CDS
CTTGGCTATACAAGGCTAGT+GGG 0.541408 5.2:-3374659 MS.gene21635:CDS
GTCAGACTTATGCATGAGGC+AGG 0.542152 5.2:-3368629 MS.gene21635:CDS
ATATCTCAACCTGCCAAAGT+GGG 0.542805 5.2:-3373817 MS.gene21635:CDS
CCAATAATTAAAGGATAACC+AGG 0.547141 5.2:+3371614 None:intergenic
TTCGAATTCCCCTGGAACTG+AGG 0.548903 5.2:-3375214 MS.gene21635:CDS
GAATCACAACCCTTCCACTT+AGG 0.553850 5.2:+3370536 None:intergenic
TGATTCTGATCCTAAGTGGA+AGG 0.553947 5.2:-3370546 MS.gene21635:CDS
CATGAAGATGTCATATATGG+TGG 0.556838 5.2:-3373899 MS.gene21635:CDS
AATCTCAGCTACTCCTTCAA+AGG 0.560362 5.2:-3371684 MS.gene21635:CDS
GGAGACTCAGCTCTCTCTGA+TGG 0.562146 5.2:-3375801 MS.gene21635:CDS
CTCCGCAGTGCTATTCGTTG+GGG 0.564268 5.2:-3375492 MS.gene21635:CDS
AACCAGGTTCCAATCGATGA+AGG 0.565616 5.2:+3371630 None:intergenic
AAATATAGAGGTTCTTACTC+GGG 0.568349 5.2:-3374844 MS.gene21635:CDS
GCAAAGGCTCTAATTTCAGA+GGG 0.569361 5.2:+3374039 None:intergenic
TGTGATTGCTAGGTGGGAGA+TGG 0.571605 5.2:-3375306 MS.gene21635:intron
TTCTCAAGGAATTCTATGGC+GGG 0.576719 5.2:-3374412 MS.gene21635:intron
ACCATATATGACATCTTCAT+GGG 0.576909 5.2:+3373901 None:intergenic
CACTGCGGAGATAATCAAGC+TGG 0.577489 5.2:+3375505 None:intergenic
ACATCACAAGTAACCAAGGT+TGG 0.578483 5.2:-3374617 MS.gene21635:CDS
GACCAAAGAGTGAAGTGGAG+GGG 0.583433 5.2:-3375822 MS.gene21635:CDS
TGAAGGAGTAGCTGAGATTG+GGG 0.585122 5.2:+3371688 None:intergenic
TCTTGGCTATACAAGGCTAG+TGG 0.585201 5.2:-3374660 MS.gene21635:CDS
AGCTGCAGCCTCAGTTCCAG+GGG 0.585982 5.2:+3375206 None:intergenic
GTGATAATGTGAAGTTTGGA+TGG 0.588810 5.2:-3375599 MS.gene21635:CDS
GGACCAAAGAGTGAAGTGGA+GGG 0.589111 5.2:-3375823 MS.gene21635:CDS
TTGGGAGCGTCCAGAAGACA+TGG 0.591746 5.2:-3375265 MS.gene21635:CDS
GGTTGCGAGGCTCATTCTGA+TGG 0.591970 5.2:-3371566 MS.gene21635:intron
TTTCTCAAGGAATTCTATGG+CGG 0.596788 5.2:-3374413 MS.gene21635:intron
GCCAACCACGCTCTTTACAC+AGG 0.598494 5.2:-3375439 MS.gene21635:intron
GCTTGGAGTTGACGCTTCTG+TGG 0.600936 5.2:-3368513 MS.gene21635:CDS
CAGGTTGAGATATGATTGAA+GGG 0.604313 5.2:+3373827 None:intergenic
ACGCTCAGGGAAGTTGCCTA+AGG 0.607352 5.2:-3375844 MS.gene21635:CDS
GCAAATCCTAATATTCATGT+GGG 0.607689 5.2:-3373757 MS.gene21635:CDS
GGATGTTCTGCTTCACTGCG+TGG 0.611052 5.2:-3370621 MS.gene21635:CDS
GCAGCATTCATATAGGTGGT+AGG 0.611057 5.2:+3373664 None:intergenic
AGCTCAAACATTACTAACAC+AGG 0.615406 5.2:-3374550 MS.gene21635:intron
TAGCACCATGGTTGATGTTG+TGG 0.615543 5.2:+3374131 None:intergenic
AAAAGCAGCATTCATATAGG+TGG 0.619409 5.2:+3373660 None:intergenic
ATGAAGATGTCATATATGGT+GGG 0.620729 5.2:-3373898 MS.gene21635:CDS
ACCTCATGATAGAGGTTGCG+AGG 0.621758 5.2:-3371579 MS.gene21635:CDS
AATTGAAGCAGCAGAAAGAG+CGG 0.625859 5.2:+3375173 None:intergenic
GCCGAAACTAAGCCCACACA+AGG 0.626457 5.2:-3368564 MS.gene21635:CDS
ATGCAACATTGATACTTCAG+AGG 0.627600 5.2:-3368586 MS.gene21635:CDS
AGCAGTGTCTGAATTCAGCT+GGG 0.628902 5.2:-3374589 MS.gene21635:CDS
AGGACCAAAGAGTGAAGTGG+AGG 0.629253 5.2:-3375824 MS.gene21635:CDS
GATTCTGATCCTAAGTGGAA+GGG 0.630398 5.2:-3370545 MS.gene21635:CDS
ATCGATGAAGGTCAAAACCA+TGG 0.631860 5.2:+3371642 None:intergenic
AAAGGCTCTAATTTCAGAGG+GGG 0.637646 5.2:+3374041 None:intergenic
TGCATAGTCATAATTAGCTG+AGG 0.638379 5.2:+3375905 None:intergenic
TTGGCTATACAAGGCTAGTG+GGG 0.646701 5.2:-3374658 MS.gene21635:CDS
GCCTCGCAACCTCTATCATG+AGG 0.647110 5.2:+3371578 None:intergenic
GGAGAAAATGAATAGCACCA+TGG 0.650294 5.2:+3374119 None:intergenic
CTAAGGACCAAAGAGTGAAG+TGG 0.660145 5.2:-3375827 MS.gene21635:CDS
TATCTCAACCTGCCAAAGTG+GGG 0.664840 5.2:-3373816 MS.gene21635:CDS
AAGCTCACCGTAAAAGACAT+CGG 0.669269 5.2:+3375576 None:intergenic
CATATTGATGGAATTCAGTG+TGG 0.674538 5.2:-3374078 MS.gene21635:CDS
ATATACCACAACATCAACCA+TGG 0.685208 5.2:-3374136 MS.gene21635:CDS
TTAGACCTGTGTAAAGAGCG+TGG 0.689153 5.2:+3375434 None:intergenic
ACGTACATCACAAGTAACCA+AGG 0.694288 5.2:-3374621 MS.gene21635:CDS
ACAGGTCAGACTTATGCATG+AGG 0.696663 5.2:-3368633 MS.gene21635:intron
CAAAGGCTCTAATTTCAGAG+GGG 0.704501 5.2:+3374040 None:intergenic
CCAAAACAATTACATCACAG+AGG 0.744075 5.2:-3373859 MS.gene21635:CDS
CACCCCAACGAATAGCACTG+CGG 0.766072 5.2:+3375490 None:intergenic
GGTTGGAGGATACTACGACG+CGG 0.797840 5.2:-3375622 MS.gene21635:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content


Chromosome Type Strat End Strand Name
chr5.2 gene 3368418 3375985 3368418 ID=MS.gene21635
chr5.2 mRNA 3368418 3375985 3368418 ID=MS.gene21635.t1;Parent=MS.gene21635
chr5.2 exon 3375788 3375985 3375788 ID=MS.gene21635.t1.exon1;Parent=MS.gene21635.t1
chr5.2 CDS 3375788 3375985 3375788 ID=cds.MS.gene21635.t1;Parent=MS.gene21635.t1
chr5.2 exon 3375440 3375652 3375440 ID=MS.gene21635.t1.exon2;Parent=MS.gene21635.t1
chr5.2 CDS 3375440 3375652 3375440 ID=cds.MS.gene21635.t1;Parent=MS.gene21635.t1
chr5.2 exon 3375116 3375316 3375116 ID=MS.gene21635.t1.exon3;Parent=MS.gene21635.t1
chr5.2 CDS 3375116 3375316 3375116 ID=cds.MS.gene21635.t1;Parent=MS.gene21635.t1
chr5.2 exon 3374807 3374884 3374807 ID=MS.gene21635.t1.exon4;Parent=MS.gene21635.t1
chr5.2 CDS 3374807 3374884 3374807 ID=cds.MS.gene21635.t1;Parent=MS.gene21635.t1
chr5.2 exon 3374551 3374703 3374551 ID=MS.gene21635.t1.exon5;Parent=MS.gene21635.t1
chr5.2 CDS 3374551 3374703 3374551 ID=cds.MS.gene21635.t1;Parent=MS.gene21635.t1
chr5.2 exon 3374318 3374426 3374318 ID=MS.gene21635.t1.exon6;Parent=MS.gene21635.t1
chr5.2 CDS 3374318 3374426 3374318 ID=cds.MS.gene21635.t1;Parent=MS.gene21635.t1
chr5.2 exon 3374029 3374195 3374029 ID=MS.gene21635.t1.exon7;Parent=MS.gene21635.t1
chr5.2 CDS 3374029 3374195 3374029 ID=cds.MS.gene21635.t1;Parent=MS.gene21635.t1
chr5.2 exon 3373635 3373947 3373635 ID=MS.gene21635.t1.exon8;Parent=MS.gene21635.t1
chr5.2 CDS 3373635 3373947 3373635 ID=cds.MS.gene21635.t1;Parent=MS.gene21635.t1
chr5.2 exon 3371567 3371749 3371567 ID=MS.gene21635.t1.exon9;Parent=MS.gene21635.t1
chr5.2 CDS 3371567 3371749 3371567 ID=cds.MS.gene21635.t1;Parent=MS.gene21635.t1
chr5.2 exon 3370514 3370644 3370514 ID=MS.gene21635.t1.exon10;Parent=MS.gene21635.t1
chr5.2 CDS 3370514 3370644 3370514 ID=cds.MS.gene21635.t1;Parent=MS.gene21635.t1
chr5.2 exon 3368418 3368651 3368418 ID=MS.gene21635.t1.exon11;Parent=MS.gene21635.t1
chr5.2 CDS 3368418 3368651 3368418 ID=cds.MS.gene21635.t1;Parent=MS.gene21635.t1
Gene Sequence

>MS.gene21635

ATGGGTAAATGGAATGGATTATTAGCCATAATGGATGATGAATTCATTAATACAAATTCCTCAGCTAATTATGACTATGCAGATGCTCTTGACAAAGCCATCATGTTTTTTGAAGGACAACGCTCAGGGAAGTTGCCTAAGGACCAAAGAGTGAAGTGGAGGGGAGACTCAGCTCTCTCTGATGGCAAGACTCAAAATGTATACAAATATACACGACATGACCTAAAATTTAACCACAATTTTGCACTAGGCTCAATATAACTTTATACAATGCTCTATATATGTGTGTTTTTTTATATGAATTCTTTATGAACAATCATGTGTCATTGACAGGTGGATTTGGTTGGAGGATACTACGACGCGGGTGATAATGTGAAGTTTGGATGGCCGATGTCTTTTACGGTGAGCTTGTTGAGTTGGACTGCTGTTGAATATGAAAGTGAGATTTCTTCGGTGAACCAGCTTGATTATCTCCGCAGTGCTATTCGTTGGGGTGCAGATTTCATACTTAAAGCTCACACTTCGCCAACCACGCTCTTTACACAGGTCTAATTCTATATATCCTATGATAATGTATACATTTTAGATAATATAATGTATACATAATGTGTGTGTGAGTTGTGTTGCATGTTGATAAGTTTTATAATCAAATATCGTTGTGATTGCTAGGTGGGAGATGGAAACGCAGATCATAATTGTTGGGAGCGTCCAGAAGACATGGATACACCAAGAACAACTTACAAGATTGATTCGAATTCCCCTGGAACTGAGGCTGCAGCTGAGGCAGCTGCCGCTCTTTCTGCTGCTTCAATTGTCTTTAAGAAAACAGATATCAATTATTCATCCAAGCTATTAAGCCAGTCAAAATCTGTAAGCAATTCAAGGAACATGTTTTATTCTCATTCATGAATCATGATGATCAATTGGCTCTATAATCCATTGATCAAGAGCTGATATTTCCATTTTGATTTTATATAATTAAACTTAAGGCCATTCAAAAAAAAAAAATATAATTAAACTTAAGAAACAAGTGAAATTTGCATTAGAGTTTTTATGTATTTAATTTAACAAAATTTACTAATAATTAAATATGTTTTGCAGTTGTTTGATTTTGCTGACAAATATAGAGGTTCTTACTCGGGTTCTTGCCCATTTTACTGCTCGTACTCTGGTTATCAGGTAAGAAATTACCTCTTGTAAAAAATAAAACATTTAAAGACTAATAATTATTTTTTCATAGATCATTCATTTATGGTTGTTATTTTAAATTGTGTATGAAAAGGATGAACTATTATGGGCTGCTTCTTGGCTATACAAGGCTAGTGGGGAAAGCAAGTACTTGACGTACATCACAAGTAACCAAGGTTGGAGTCAAGCAGTGTCTGAATTCAGCTGGGATAACAAATTTGTTGGAGCTCAAACATTACTAACACAGGTACTTATATTTATAGTTAAACCATTAACTACCATATAACAAAACTGTATTCTTTAGTAAACATTAGTTCAAAAGGAAAAATTAACTCATTAATTCTAATTGTTTTTCTTTCTTCTTTCTCAAGGAATTCTATGGCGGGAAGAAGGAGTTAGCCAAGATTAAGACTGATGCCGAATCGTTTATATGTGCATTGATGCCAGGAAGTAGCTCTCTACAGATTAAAACAACTCCTGGTATATATGTATATATATATAAGTTACCTTTAATGATTAATAATACATATAACATACAGTCAATCTTATTTCAATCAATGGTGGAATGAGCTCAATTAGTGTATTATTTTTTGTTAACTCAGGTGGGCTTCTGTATATTAGAGATAGTAGTAATTTGCAATATACCACAACATCAACCATGGTGCTATTCATTTTCTCCAAAATCTTAAATAAAAATCATATTGATGGAATTCAGTGTGGCTCTGCCCATTTCTCCCCCTCTGAAATTAGAGCCTTTGCAAAATCACAGGTATATATACTAATCTGGTTTTGCTTCTAAAATATCAAACTCATTGGTGCATAACTAAAACTTGAATGTGACATTACATAGGTGGACTACATATTAGGAAACAATCCCATGAAGATGTCATATATGGTGGGATATGGGAGTAAATATCCAAAACAATTACATCACAGAGGTTCTTCCATCCCTTCAATCATATCTCAACCTGCCAAAGTGGGGTGCAATGATGGCCAGAACTATTTCTCTTCATCTAATGCAAATCCTAATATTCATGTGGGTGCTATTGTTGGAGGACCAAATTCTAATGACCAATACAATGATGCAAGATCTGATTACTCTCATGCAGAACCTACCACCTATATGAATGCTGCTTTTGTTGGTTCTGTTGCAGCTTTGCTTGGTGAAACTAAAACCGAGACTCTTCGATTTTCTTGAATTGGTCATGCCAAGGCTAAGGAAACTGATTAGTACTTCATAGCTGATTGCTAATAATTTATCTCCTCCATATATATGTTAAGAAAGTCTTACGTCTGAAGTTATTACAAGCGAACTAGTTAAATAATTTGTAAGGAACGTTAAGTTCATACTTCAAAGGACTTTATTATTGTCGTTATTATAAGTTAAAATCTCACTTCTATTCTGAGTTGTTATTACATGCTCTTATAAAATGAAATCACAGGAGTCGTGTTCTTTTATCAATGAGCTCATATGTTTACTTGTGGAAAAGGGAATCTGGATACTGATTATTGCAAAGATTAATTAATTTTGAAATTTATAAACTTAAATAAAATAAGTCTTTAATGAGACTTTTGAAAAGAAAAATAAAATATTTAAGCCACTAGAATTGTTAGAGTGATACGAGATTTGCGTTGCATGTATATGATCTTAGGTTAAAATCCCATTGCCAACATTGTACATAAAAATTCAAACATTTAAAGACCTGAAGTTGAACTTTTGACAATGTATTTCTAATCATCCGGACTATGTATGTATGATTAAGTTTGCTATAATCCATTTGAAAAATATGTGATGAACACCCAAACCCCCCAACAATATAATGAGAGAATCTCTAAAAAAAAATATAATGAGAGAGAAATAGAAAATGTGATGTGATAGATGTGATATGTTAGCGATGAGATAAAAAAAGAGATAAAGAATAAATAAATAAATAAGATGTTGAAACATTTGTCAAATTACTTGTTAAAACATGTTCTTAAAAAAAAATTAAGTTGGTTAACAAATCATCCTAGACTTTCAAAAAAGTTAGACTCAAATCTAAACTTTTTGGGACTAAGTCAAACTTAAATCTTACAAAACCTAATTCAACCTATCGTATTTTCTGCCCTTATTGTGAGTTTGGTCTTGGATGGATGTAGGGCTTGGTCCCATTTTTCGTATCAGATCATTGAATCTACACCTGCAATGCTTAATTCTGTTAAAAAATGTAATTAATTCAATCGAGTAAATGATTATTAGTACTCATTCAACTGACAAAAATTAACAATATAAAATGATTTTATCATATGTGTGATTTTCCAATGACTCTTATCATTTTATATATCAACAATATAAAATGATTAATCCAATTCATAATAAAAATTGTTGTTAATTCAACTTCGTAATTATTTTCAACATGTTCTAAACTAATCATGTATTTAACTGAATTAAACATAATTTTAGATTTAATTAACCACAAGTTAAATGTATAAAGAAAGGAAATTGGGTATCCATTAAAAACATTTATTGTGGATGATTTAAATATATAATATTTTTTGGTAGATGTATGATTTAAATTTAAACCTTTGACTAAAGAGAAATGATATTTTGATAACCACTTTTTGACAACTTTTGGACAACTTTCTCTCTCATACTCACATGATGTTGTTATCCTCTCTCTTCCTTTTTCTCTCTCCATTGTTTTTGACCAATAAGAAGTGAGAAAAACAAGGTTGTCAACAAAGTTGTATGTCAAAATATCATTACTCTTGACTAAAATACAAATTCAGTGTACACAAAAGATTAACAGAATATACCAATTCTGTGCCGCTCAAATATAGTGTCTGAAAACTGAAATTCACACCATTTTTTCACAACAGTAATCTCCTTAACTTCAACAACCAACCAACCAACCATGTCTTCATCTTCTCTAACAGCATTTTCTTACTCCTTCCCATTCACAGCATCCCTCAAATCTTCTCACCCAATTCCATTCTCTTGTTCTTTTCCTCTCAAACACCATACCCTTCATCTCAAATCATCACCATCACTGTTTGTTTCACCTTCAGGAGCTGCAACACCCACAACCTCAATTGAAATCGACAAATCCCCAATCTCAGCTACTCCTTCAAAGGTTCTTCCTTTTCGGGTTGGCCATGGTTTTGACCTTCATCGATTGGAACCTGGTTATCCTTTAATTATTGGTGGAATTAATATACCTCATGATAGAGGTTGCGAGGCTCATTCTGATGGTATTCATTCTATCTAACCATGCCCCTTTTCATTTTTATAATCTTTTTTACATTTCTCCGAGTTAATAGTCATTTTGATTCTTAAATGTGTGAGACACTGTCACAATTGTTCTTCAATGTATAAAGATTTCAACAACATACATAAATTTGTCTTTTTTGTTAGTTAGTTAGTTAGTTAGTGAATATTTTCTGGTCGTCAATTTAGTCCATAAAATTATTAACGAAAGATACACTCTATGCTCTTTTTGTAATTTCGAAATATATAGGGACTATGACTCTGTTTGGTAGCAAGTAGTGGATAGTGGATAAGTTAGTTGATAGTGGATGGACTTATAGCAGATAAGCTAGCTGATAGTGGATAAACTAGTGAATTAAATTTGTAGTGTTTTGAAAATTATACGGTATAAGCTATCCATTGTAAGTTTGTGATTAGGGGCCATTTGTTTGGATTGGCTTATTTACTATGAAACACGGACACTCCACAAATTAGGTGTGTTCCGGTGTCGGACACGCTTCGCTTCCTACACTGGCACATATGATTACACTAAATTATGTCATTTTCTCAAAATTATTATCGACATCGGTGTCATGTCCCGTGTCCGTGTCTATGTTTGTGCTTCATAGCTTATTTTTTAGCTTATGAAAAATAGTTTATGCAAATAAATAAGTTGTTATGTTAATTCATAAGTTCTCACTAACGAAAATTGTATTTTCATAAGCCGTTTTCTCATAAACTATCTTGACGAGCTTATGAATAATACATAAAAGCTTATTTATTTTCATAAGCTGTTCTGGATAAGCTAAAAAATAAGCCAATCCAAATGGGCCCAAGATCTTGCCAACAACTCTATACCAAATTGAGTATTTACTCAATTTTTTCATTTTTTTTCTGAGTTTGAACATGATGATGAAATATGAACAGGGGATGTTCTGCTTCACTGCGTGGTTGATGCAATTTTAGGGGCTTTAGGTCTTCCTGATATAGGACAGATTTTTCCTGATTCTGATCCTAAGTGGAAGGGTTGTGATTCTTCGGTGTTTGTCCATGAATCTGTGAGTATATTCTACATAAATATCTTCCTTCTACTTTATTTTCTCAATTGAAATACAGTATGATTTAGGCCTTAGTGTAATTGTGTTTTCAGTTTTTCTAATGTTGTTTGAATTTAGGGAATATATTAATAGGTTACCAAATGTTCACCGTAATGATTTGTTTGTTCTGTCACAAATTGTAATTCCATTTCAATGAATTATTCATGGACACATTGCATATTGCTTTCAAGTTATTATTATGCAGTGTTAGAACTTAAATGGTTGCTAAAGTATAAGCATGATAGGAAGGTATGCCTTGCAATCAGGGACAGTGGAATGGAAAGACATTGTCATTGTTCGGATTGTTAGAATAAGATGGAATGAAATGAGATATCAAATGCATTCCATCTGCTACATCTATTTTTCATTCTTCTAATTTAGGGTGCATGGATGAAATGACATGACTTTATTATTGAACGAGTTTGGTACGTACGAGTTTAAGAAATCATGAAATTATTACTGAGTTAAAAGGGTAAGGACTTAGAAGAGATTAGCGCTTTGGTTAACAGTGGAAATAATGACATGAGTTAACAGGCTACTGATTAGCTTGATGAGCAGAAAAGCAGACTGTTCATGTACCAATCATATACCTTGTATGTATATAAGGGAATCAGCTGTGTTCAGTTTTTTTAAAGGGGACGGGAGAAGAGAGGAAGGAGAGCAAAATCTCGCATAATACTATAACATTATAAATAGACTAAATTAACCTTAAATACCACACGAAATGTTAAAATGGTGTAAAATCTAAATTTGTATGTTCTTTTCATTAAAATTACTCATATCTCCGTATTATACCAAACAAAAAAGAGAGATGTTTTTATTCCCCTCAGTTAGAACCGAATAGACCTGTAGAGGCGGGTATGCATGCCAGCTCGCACCAGTCAGCATAGGCCCATATTTAAACTGATTGGTTTGCATAATCCCTTATTTAAACAGGCATATATTTAAGAAGTTCGCATACATATGTGAGTTCAAAAGGCCGGTCTGCCTACTAATGTGCATGTTTTACTTTTCCTTGTAAAAAAATTTTTCGGTAATTTTCACTTGAAAAGTAACTTAAAAATTGTTTTTCTTTTTTATGTAGATATATGGGTTGATTTGCAAAGTTGTTCATCAAACCCATTTAATCCGGTGTCACAAACTAACATACATAGGATCACAAGGTCAGCTATTTAACTGGGCACAAATTTACATCTCCCAAACAACCGTTAGCCCTTGTACTCACCTCAACATACACACATGATACACCTCAAATATGTCATTTCCGAAGAAAAAGCTTTTATTCACTCTACAGACAGTTAGCATGTGAAGTGTGACTTCCTATTTTAAACAATTCAGATACAATTCACATCTGAAAAATGAGTAATTATTCTAACAAGCTCTATCAATTTAAGCTGATACAGACCAAAAAGTAGAGAATGAGTTCAAGGATATTACAGTAAGAAAAAATTACCTAACAGTATTCAGAAGTGAGATTGTGCTCTATCAGTCAAGTGTGTAACAGGGTAATTGATAATGTCTCTTAACCAAACAAAACTTTGCTATTTTTTTTTTTTTAGTTAAATTTTTTGCTAGTTATTGAATAAGTAAACTGTGACCTAACAGTGACTCCTCTTTTATTGTATTAATTTTGGACCCTGCATTTACCATGTGTTTAGCAGTTATTAAACAACATTTTCTGTGATTTTCTTTTGACGTATGATGGTTGTACAAATTATATTTGGTTACTGAAAGTGTTTTCTTAGGATTATGATTAAAGATAACGCTGTATCTATACTTGATATTTTTAGGGTATTTTATAATATGTTATGATTTTATTACAGGTCAGACTTATGCATGAGGCAGGTTATGATATTGGAAATTTAGATGCAACATTGATACTTCAGAGGCCGAAACTAAGCCCACACAAGGATGCTATCAAGGCCAACTTATCTGCACTGCTTGGAGTTGACGCTTCTGTGGTAAATATAAAGGCAAAAACTCATGAAAAGGTTGATAGCCTTGGAGAAAATAGAAGTATAGCAGCTCACACAGTTGTTCTTCTAATGAAGAAATGA

Protein sequence

>MS.gene21635.t1

MGKWNGLLAIMDDEFINTNSSANYDYADALDKAIMFFEGQRSGKLPKDQRVKWRGDSALSDGKTQNVDLVGGYYDAGDNVKFGWPMSFTVSLLSWTAVEYESEISSVNQLDYLRSAIRWGADFILKAHTSPTTLFTQVGDGNADHNCWERPEDMDTPRTTYKIDSNSPGTEAAAEAAAALSAASIVFKKTDINYSSKLLSQSKSLFDFADKYRGSYSGSCPFYCSYSGYQDELLWAASWLYKASGESKYLTYITSNQGWSQAVSEFSWDNKFVGAQTLLTQEFYGGKKELAKIKTDAESFICALMPGSSSLQIKTTPGGLLYIRDSSNLQYTTTSTMVLFIFSKILNKNHIDGIQCGSAHFSPSEIRAFAKSQVDYILGNNPMKMSYMVGYGSKYPKQLHHRGSSIPSIISQPAKVGCNDGQNYFSSSNANPNIHVGAIVGGPNSNDQYNDARSDYSHAEPTTYMNAAFVGSVAALLGAATPTTSIEIDKSPISATPSKVLPFRVGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGCDSSVFVHESVRLMHEAGYDIGNLDATLILQRPKLSPHKDAIKANLSALLGVDASVVNIKAKTHEKVDSLGENRSIAAHTVVLLMKK