Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063247.t1 | XP_024641268.1 | 97 | 270 | 8 | 0 | 1 | 270 | 1 | 270 | 1.70E-147 | 531.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063247.t1 | Q9LW60 | 43.9 | 278 | 128 | 7 | 1 | 269 | 1 | 259 | 1.7e-52 | 207.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063247.t1 | A0A072VHH4 | 95.6 | 274 | 8 | 1 | 1 | 270 | 1 | 274 | 6.6e-146 | 526.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene063247 | 0.802765 | 4.80E-49 | -1.69E-46 |
| MS.gene049283 | MS.gene063247 | 0.805291 | 1.43E-49 | -1.69E-46 |
| MS.gene049293 | MS.gene063247 | -0.801909 | 7.21E-49 | -1.69E-46 |
| MS.gene049419 | MS.gene063247 | -0.809641 | 1.71E-50 | -1.69E-46 |
| MS.gene049669 | MS.gene063247 | 0.812194 | 4.79E-51 | -1.69E-46 |
| MS.gene051492 | MS.gene063247 | 0.824304 | 8.68E-54 | -1.69E-46 |
| MS.gene051676 | MS.gene063247 | 0.809535 | 1.80E-50 | -1.69E-46 |
| MS.gene051832 | MS.gene063247 | 0.817846 | 2.67E-52 | -1.69E-46 |
| MS.gene051975 | MS.gene063247 | 0.816182 | 6.31E-52 | -1.69E-46 |
| MS.gene052108 | MS.gene063247 | 0.817219 | 3.69E-52 | -1.69E-46 |
| MS.gene052493 | MS.gene063247 | 0.80029 | 1.54E-48 | -1.69E-46 |
| MS.gene052586 | MS.gene063247 | 0.841265 | 5.28E-58 | -1.69E-46 |
| MS.gene052685 | MS.gene063247 | 0.811336 | 7.37E-51 | -1.69E-46 |
| MS.gene052889 | MS.gene063247 | 0.821881 | 3.19E-53 | -1.69E-46 |
| MS.gene053045 | MS.gene063247 | 0.802788 | 4.75E-49 | -1.69E-46 |
| MS.gene053094 | MS.gene063247 | 0.860608 | 1.83E-63 | -1.69E-46 |
| MS.gene053189 | MS.gene063247 | 0.805363 | 1.38E-49 | -1.69E-46 |
| MS.gene053298 | MS.gene063247 | 0.8529 | 3.41E-61 | -1.69E-46 |
| MS.gene053340 | MS.gene063247 | 0.90475 | 8.85E-80 | -1.69E-46 |
| MS.gene053963 | MS.gene063247 | 0.870305 | 1.61E-66 | -1.69E-46 |
| MS.gene05410 | MS.gene063247 | 0.813815 | 2.11E-51 | -1.69E-46 |
| MS.gene05414 | MS.gene063247 | 0.802355 | 5.84E-49 | -1.69E-46 |
| MS.gene05415 | MS.gene063247 | 0.806849 | 6.73E-50 | -1.69E-46 |
| MS.gene054222 | MS.gene063247 | 0.847537 | 1.09E-59 | -1.69E-46 |
| MS.gene054479 | MS.gene063247 | 0.82289 | 1.86E-53 | -1.69E-46 |
| MS.gene054576 | MS.gene063247 | 0.843042 | 1.79E-58 | -1.69E-46 |
| MS.gene05469 | MS.gene063247 | 0.830957 | 2.19E-55 | -1.69E-46 |
| MS.gene054892 | MS.gene063247 | 0.807808 | 4.22E-50 | -1.69E-46 |
| MS.gene054893 | MS.gene063247 | 0.803791 | 2.95E-49 | -1.69E-46 |
| MS.gene055147 | MS.gene063247 | 0.816536 | 5.26E-52 | -1.69E-46 |
| MS.gene055148 | MS.gene063247 | 0.805247 | 1.46E-49 | -1.69E-46 |
| MS.gene055226 | MS.gene063247 | 0.805348 | 1.39E-49 | -1.69E-46 |
| MS.gene055603 | MS.gene063247 | 0.827084 | 1.90E-54 | -1.69E-46 |
| MS.gene056068 | MS.gene063247 | 0.809992 | 1.44E-50 | -1.69E-46 |
| MS.gene056091 | MS.gene063247 | 0.800309 | 1.53E-48 | -1.69E-46 |
| MS.gene056403 | MS.gene063247 | 0.801632 | 8.22E-49 | -1.69E-46 |
| MS.gene05659 | MS.gene063247 | 0.801236 | 9.91E-49 | -1.69E-46 |
| MS.gene056605 | MS.gene063247 | 0.802031 | 6.80E-49 | -1.69E-46 |
| MS.gene056638 | MS.gene063247 | 0.80849 | 3.02E-50 | -1.69E-46 |
| MS.gene056779 | MS.gene063247 | 0.801232 | 9.92E-49 | -1.69E-46 |
| MS.gene056986 | MS.gene063247 | 0.840433 | 8.72E-58 | -1.69E-46 |
| MS.gene057026 | MS.gene063247 | 0.8023 | 5.99E-49 | -1.69E-46 |
| MS.gene057102 | MS.gene063247 | 0.800337 | 1.51E-48 | -1.69E-46 |
| MS.gene057155 | MS.gene063247 | 0.80783 | 4.17E-50 | -1.69E-46 |
| MS.gene057208 | MS.gene063247 | 0.806765 | 7.02E-50 | -1.69E-46 |
| MS.gene057893 | MS.gene063247 | -0.801643 | 8.17E-49 | -1.69E-46 |
| MS.gene058498 | MS.gene063247 | 0.809932 | 1.48E-50 | -1.69E-46 |
| MS.gene058500 | MS.gene063247 | 0.802235 | 6.18E-49 | -1.69E-46 |
| MS.gene058897 | MS.gene063247 | 0.80322 | 3.87E-49 | -1.69E-46 |
| MS.gene059830 | MS.gene063247 | 0.809208 | 2.12E-50 | -1.69E-46 |
| MS.gene05985 | MS.gene063247 | -0.825155 | 5.47E-54 | -1.69E-46 |
| MS.gene060012 | MS.gene063247 | 0.804555 | 2.04E-49 | -1.69E-46 |
| MS.gene060365 | MS.gene063247 | 0.846703 | 1.84E-59 | -1.69E-46 |
| MS.gene060412 | MS.gene063247 | 0.823526 | 1.32E-53 | -1.69E-46 |
| MS.gene060572 | MS.gene063247 | 0.811182 | 7.96E-51 | -1.69E-46 |
| MS.gene060879 | MS.gene063247 | 0.861963 | 7.09E-64 | -1.69E-46 |
| MS.gene061040 | MS.gene063247 | -0.801014 | 1.10E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063247.t1 | MTR_1g041475 | 95.620 | 274 | 8 | 1 | 1 | 270 | 1 | 274 | 0.0 | 538 |
| MS.gene063247.t1 | MTR_1g075730 | 60.584 | 274 | 104 | 1 | 1 | 270 | 1 | 274 | 6.62e-118 | 339 |
| MS.gene063247.t1 | MTR_1g075730 | 59.353 | 278 | 105 | 1 | 1 | 270 | 1 | 278 | 2.20e-116 | 335 |
| MS.gene063247.t1 | MTR_8g463130 | 36.719 | 256 | 128 | 5 | 41 | 269 | 5 | 253 | 1.27e-37 | 133 |
| MS.gene063247.t1 | MTR_8g463130 | 35.938 | 256 | 130 | 5 | 41 | 269 | 33 | 281 | 1.92e-37 | 134 |
| MS.gene063247.t1 | MTR_2g008850 | 34.082 | 267 | 142 | 5 | 30 | 269 | 21 | 280 | 5.39e-33 | 122 |
| MS.gene063247.t1 | MTR_4g094208 | 31.429 | 280 | 158 | 5 | 17 | 269 | 4 | 276 | 3.09e-32 | 120 |
| MS.gene063247.t1 | MTR_2g078760 | 35.156 | 256 | 132 | 5 | 41 | 269 | 5 | 253 | 1.08e-31 | 118 |
| MS.gene063247.t1 | MTR_5g063940 | 35.242 | 227 | 116 | 5 | 71 | 269 | 11 | 234 | 1.35e-31 | 117 |
| MS.gene063247.t1 | MTR_2g008850 | 35.398 | 226 | 117 | 4 | 71 | 269 | 11 | 234 | 1.78e-31 | 117 |
| MS.gene063247.t1 | MTR_2g078760 | 35.156 | 256 | 132 | 5 | 41 | 269 | 84 | 332 | 3.01e-31 | 118 |
| MS.gene063247.t1 | MTR_5g063940 | 35.242 | 227 | 116 | 5 | 71 | 269 | 58 | 281 | 7.39e-31 | 116 |
| MS.gene063247.t1 | MTR_7g083300 | 71.084 | 83 | 18 | 3 | 79 | 159 | 14 | 92 | 1.06e-29 | 108 |
| MS.gene063247.t1 | MTR_3g074610 | 32.599 | 227 | 122 | 5 | 71 | 269 | 58 | 281 | 8.87e-27 | 105 |
| MS.gene063247.t1 | MTR_4g094542 | 31.641 | 256 | 140 | 5 | 41 | 269 | 117 | 364 | 3.72e-25 | 102 |
| MS.gene063247.t1 | MTR_1g014640 | 30.698 | 215 | 124 | 5 | 80 | 269 | 109 | 323 | 2.52e-24 | 100 |
| MS.gene063247.t1 | MTR_1g013400 | 30.698 | 215 | 124 | 5 | 80 | 269 | 109 | 323 | 2.52e-24 | 100 |
| MS.gene063247.t1 | MTR_3g105730 | 30.233 | 215 | 125 | 5 | 80 | 269 | 66 | 280 | 3.04e-23 | 96.7 |
| MS.gene063247.t1 | MTR_3g105730 | 30.233 | 215 | 125 | 5 | 80 | 269 | 44 | 258 | 3.55e-23 | 95.9 |
| MS.gene063247.t1 | MTR_2g078760 | 34.272 | 213 | 106 | 5 | 41 | 226 | 84 | 289 | 2.24e-19 | 85.9 |
| MS.gene063247.t1 | MTR_1g115570 | 28.111 | 217 | 127 | 8 | 79 | 270 | 126 | 338 | 7.07e-17 | 79.7 |
| MS.gene063247.t1 | MTR_2g078760 | 38.621 | 145 | 80 | 3 | 41 | 183 | 84 | 221 | 1.37e-16 | 77.8 |
| MS.gene063247.t1 | MTR_3g091060 | 26.407 | 231 | 141 | 5 | 67 | 270 | 113 | 341 | 4.35e-14 | 71.6 |
| MS.gene063247.t1 | MTR_5g024340 | 24.498 | 249 | 148 | 7 | 59 | 269 | 99 | 345 | 1.71e-13 | 70.1 |
| MS.gene063247.t1 | MTR_5g071550 | 27.155 | 232 | 129 | 9 | 73 | 269 | 148 | 374 | 1.69e-12 | 67.0 |
| MS.gene063247.t1 | MTR_4g094208 | 29.412 | 170 | 111 | 3 | 17 | 184 | 4 | 166 | 1.05e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene063247.t1 | AT3G23360 | 43.369 | 279 | 128 | 7 | 1 | 269 | 1 | 259 | 8.32e-70 | 216 |
| MS.gene063247.t1 | AT4G28400 | 35.448 | 268 | 136 | 7 | 30 | 269 | 2 | 260 | 1.20e-36 | 131 |
| MS.gene063247.t1 | AT4G28400 | 35.798 | 257 | 129 | 6 | 41 | 269 | 34 | 282 | 2.21e-36 | 131 |
| MS.gene063247.t1 | AT2G20630 | 34.630 | 257 | 132 | 6 | 41 | 269 | 30 | 278 | 3.53e-36 | 130 |
| MS.gene063247.t1 | AT2G20630 | 34.241 | 257 | 133 | 6 | 41 | 269 | 30 | 278 | 1.04e-33 | 124 |
| MS.gene063247.t1 | AT3G15260 | 33.094 | 278 | 149 | 7 | 20 | 269 | 20 | 288 | 3.15e-33 | 122 |
| MS.gene063247.t1 | AT3G15260 | 33.094 | 278 | 149 | 7 | 20 | 269 | 20 | 288 | 3.15e-33 | 122 |
| MS.gene063247.t1 | AT1G22280 | 33.778 | 225 | 120 | 4 | 72 | 269 | 58 | 280 | 9.56e-30 | 113 |
| MS.gene063247.t1 | AT1G78200 | 34.513 | 226 | 114 | 6 | 75 | 269 | 15 | 237 | 5.42e-29 | 110 |
| MS.gene063247.t1 | AT1G78200 | 34.513 | 226 | 114 | 6 | 75 | 269 | 15 | 237 | 5.42e-29 | 110 |
| MS.gene063247.t1 | AT1G22280 | 33.333 | 231 | 119 | 5 | 72 | 269 | 58 | 286 | 5.63e-29 | 111 |
| MS.gene063247.t1 | AT1G78200 | 34.538 | 249 | 129 | 7 | 52 | 269 | 37 | 282 | 5.83e-29 | 111 |
| MS.gene063247.t1 | AT1G78200 | 34.538 | 249 | 129 | 7 | 52 | 269 | 37 | 282 | 5.83e-29 | 111 |
| MS.gene063247.t1 | AT1G78200 | 34.538 | 249 | 129 | 7 | 52 | 269 | 37 | 282 | 5.83e-29 | 111 |
| MS.gene063247.t1 | AT1G34750 | 30.389 | 283 | 166 | 5 | 15 | 269 | 2 | 281 | 2.04e-26 | 104 |
| MS.gene063247.t1 | AT1G34750 | 30.389 | 283 | 166 | 5 | 15 | 269 | 2 | 281 | 2.04e-26 | 104 |
| MS.gene063247.t1 | AT1G34750 | 30.389 | 283 | 166 | 5 | 15 | 269 | 2 | 281 | 2.04e-26 | 104 |
| MS.gene063247.t1 | AT4G31750 | 30.698 | 215 | 124 | 5 | 80 | 269 | 65 | 279 | 4.35e-25 | 101 |
| MS.gene063247.t1 | AT4G31750 | 30.698 | 215 | 124 | 5 | 80 | 269 | 65 | 279 | 4.35e-25 | 101 |
| MS.gene063247.t1 | AT4G31750 | 30.698 | 215 | 124 | 5 | 80 | 269 | 65 | 279 | 5.37e-25 | 101 |
| MS.gene063247.t1 | AT5G24940 | 29.224 | 219 | 128 | 6 | 77 | 269 | 62 | 279 | 1.65e-23 | 99.4 |
| MS.gene063247.t1 | AT2G34740 | 29.020 | 255 | 145 | 5 | 43 | 269 | 88 | 334 | 1.03e-22 | 95.9 |
| MS.gene063247.t1 | AT5G10740 | 26.977 | 215 | 132 | 4 | 80 | 269 | 65 | 279 | 4.93e-21 | 91.3 |
| MS.gene063247.t1 | AT5G10740 | 26.977 | 215 | 132 | 4 | 80 | 269 | 65 | 279 | 4.93e-21 | 91.3 |
| MS.gene063247.t1 | AT4G28400 | 33.645 | 214 | 106 | 6 | 41 | 226 | 34 | 239 | 7.88e-20 | 86.3 |
| MS.gene063247.t1 | AT5G53140 | 26.047 | 215 | 134 | 3 | 80 | 269 | 133 | 347 | 4.75e-17 | 80.5 |
| MS.gene063247.t1 | AT5G53140 | 26.047 | 215 | 134 | 3 | 80 | 269 | 133 | 347 | 4.75e-17 | 80.5 |
| MS.gene063247.t1 | AT2G34740 | 27.358 | 212 | 118 | 5 | 43 | 226 | 84 | 287 | 2.37e-12 | 66.2 |
| MS.gene063247.t1 | AT2G34740 | 27.358 | 212 | 118 | 5 | 43 | 226 | 102 | 305 | 3.03e-12 | 66.2 |
| MS.gene063247.t1 | AT3G51470 | 20.988 | 243 | 159 | 4 | 59 | 269 | 42 | 283 | 1.87e-11 | 63.5 |
| MS.gene063247.t1 | AT3G51470 | 20.988 | 243 | 159 | 4 | 59 | 269 | 86 | 327 | 2.62e-11 | 63.5 |
Find 50 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAATTGGCTTGCAAATATT+TGG | 0.170520 | 1.3:+24832172 | None:intergenic |
| GAGATTCTTGTCAAAATAAT+TGG | 0.178491 | 1.3:+24832157 | None:intergenic |
| TGCTCTCTTGAGTGTTTCTT+TGG | 0.223443 | 1.3:+24831567 | None:intergenic |
| ACATCTGTGATGATAATAAA+TGG | 0.273873 | 1.3:-24831478 | MS.gene063247:CDS |
| TGATAAGATTCACTGCTTCT+TGG | 0.281632 | 1.3:+24830488 | None:intergenic |
| AACTTGTGGTTGGAAGTTAT+TGG | 0.296396 | 1.3:-24830748 | MS.gene063247:CDS |
| GTGGAGCATGATTGGATTAA+TGG | 0.328700 | 1.3:-24832305 | MS.gene063247:CDS |
| GAATGATTAAACATGAAATA+TGG | 0.349116 | 1.3:+24830395 | None:intergenic |
| TAGTACTGAATTTGTGATCT+TGG | 0.359368 | 1.3:-24830717 | MS.gene063247:CDS |
| CTTAGGAATCTTTGATACTT+TGG | 0.361268 | 1.3:-24832210 | MS.gene063247:CDS |
| TTGACTTGCACAGGCACTTC+GGG | 0.367269 | 1.3:-24832426 | MS.gene063247:intron |
| TCTGTGATACCAATGTTTCT+TGG | 0.370921 | 1.3:+24831360 | None:intergenic |
| ACATGATGACCATGTGATAT+TGG | 0.372321 | 1.3:+24832329 | None:intergenic |
| CGGGTGAAACTCTCATGTTT+AGG | 0.373283 | 1.3:-24832407 | MS.gene063247:CDS |
| ATATTTCATGTTTAATCATT+CGG | 0.384965 | 1.3:-24830393 | MS.gene063247:CDS |
| AAGAAGCAGTGAATCTTATC+AGG | 0.393702 | 1.3:-24830486 | MS.gene063247:CDS |
| TCAGATGAAACATGCATCAT+AGG | 0.400144 | 1.3:-24831505 | MS.gene063247:CDS |
| GGAATCTTTGATACTTTGGT+TGG | 0.403046 | 1.3:-24832206 | MS.gene063247:CDS |
| ACAAGAAGCAGCAGAGTGTT+TGG | 0.405610 | 1.3:-24830449 | MS.gene063247:CDS |
| TCTTGGCAAGCAATGGCATA+TGG | 0.410623 | 1.3:-24830700 | MS.gene063247:CDS |
| GGCGTAGCTTATCAGACAAT+TGG | 0.418185 | 1.3:-24831400 | MS.gene063247:CDS |
| GTGATACAAAGAGAGCAAAT+TGG | 0.443813 | 1.3:-24832251 | MS.gene063247:CDS |
| GTAAGAAGAAATCATGGAGT+TGG | 0.448595 | 1.3:-24832374 | MS.gene063247:CDS |
| ATCATGTGGTGGAGCATGAT+TGG | 0.450402 | 1.3:-24832313 | MS.gene063247:CDS |
| AATTATGTTAGTCTCATTTG+AGG | 0.462042 | 1.3:-24831597 | MS.gene063247:intron |
| AGAAAGGTAAGAAGAAATCA+TGG | 0.465978 | 1.3:-24832380 | MS.gene063247:CDS |
| TGGCTAAGGAAGCATTGGTT+AGG | 0.478204 | 1.3:-24830429 | MS.gene063247:CDS |
| AGCAGCAGAGTGTTTGGCTA+AGG | 0.497684 | 1.3:-24830443 | MS.gene063247:CDS |
| GAGACAGAATTGTGGTACTT+AGG | 0.501693 | 1.3:-24832227 | MS.gene063247:CDS |
| TTCTAAAGCTTCAGAACTTG+TGG | 0.505454 | 1.3:-24830762 | MS.gene063247:CDS |
| AAAGCTTCAGAACTTGTGGT+TGG | 0.510242 | 1.3:-24830758 | MS.gene063247:CDS |
| ATTGACTTGCACAGGCACTT+CGG | 0.511916 | 1.3:-24832427 | MS.gene063247:intron |
| AAACACTCTGCTGCTTCTTG+TGG | 0.521856 | 1.3:+24830451 | None:intergenic |
| CTTGGCAAGCAATGGCATAT+GGG | 0.527736 | 1.3:-24830699 | MS.gene063247:CDS |
| CTCATGTTTAGGAAATAGAA+AGG | 0.530586 | 1.3:-24832396 | MS.gene063247:CDS |
| GTGTTTGGCTAAGGAAGCAT+TGG | 0.535898 | 1.3:-24830434 | MS.gene063247:CDS |
| ATCAATCATCCAAGAAACAT+TGG | 0.538131 | 1.3:-24831369 | MS.gene063247:CDS |
| GAGTTGGAAGCAAGCCATCA+TGG | 0.546613 | 1.3:-24832358 | MS.gene063247:CDS |
| GAATCTTATCAGGCACATAG+AGG | 0.593854 | 1.3:-24830476 | MS.gene063247:CDS |
| AGTTCTGTAATCTCCGATGT+TGG | 0.599281 | 1.3:+24831438 | None:intergenic |
| AGGTAATGCAACAGGTACAA+AGG | 0.604493 | 1.3:-24830786 | MS.gene063247:intron |
| TTTGTGATCTTGGCAAGCAA+TGG | 0.607158 | 1.3:-24830707 | MS.gene063247:CDS |
| ATCACATGGTCATCATGTGG+TGG | 0.639046 | 1.3:-24832324 | MS.gene063247:CDS |
| GATATTGGCATCATCCATGA+TGG | 0.650715 | 1.3:+24832344 | None:intergenic |
| AAACTCGTGCTAGCCAACAT+CGG | 0.656947 | 1.3:-24831451 | MS.gene063247:CDS |
| GGCAAGCAATGGCATATGGG+AGG | 0.662078 | 1.3:-24830696 | MS.gene063247:intron |
| ACACTCAAGAGAGCATACCT+AGG | 0.689445 | 1.3:-24831559 | MS.gene063247:CDS |
| TGGATGATGCCAATATCACA+TGG | 0.692201 | 1.3:-24832338 | MS.gene063247:CDS |
| AAATTGGTGAGACAGAATTG+TGG | 0.696148 | 1.3:-24832235 | MS.gene063247:CDS |
| AATATCACATGGTCATCATG+TGG | 0.739236 | 1.3:-24832327 | MS.gene063247:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAGAAAACAAATATTTAA+GGG | - | chr1.3:24830477-24830496 | MS.gene063247:CDS | 10.0% |
| !! | ATATTTCATGTTTAATCATT+CGG | - | chr1.3:24832609-24832628 | MS.gene063247:CDS | 15.0% |
| !! | CATAAGAAAACAAATATTTA+AGG | - | chr1.3:24830476-24830495 | MS.gene063247:CDS | 15.0% |
| !! | TAATATTATTATATTGAGAG+AGG | + | chr1.3:24832082-24832101 | None:intergenic | 15.0% |
| !! | TTTAAGGGAAAAATAATATA+TGG | - | chr1.3:24830492-24830511 | MS.gene063247:CDS | 15.0% |
| !!! | TTTGAAATTTCGTAATAAAT+CGG | - | chr1.3:24832405-24832424 | MS.gene063247:CDS | 15.0% |
| !! | ATAAAGAACATAATCTCATA+AGG | + | chr1.3:24830525-24830544 | None:intergenic | 20.0% |
| !! | GAATGATTAAACATGAAATA+TGG | + | chr1.3:24832610-24832629 | None:intergenic | 20.0% |
| !! | GAGAAAATAGGAAATTATAT+GGG | + | chr1.3:24831342-24831361 | None:intergenic | 20.0% |
| !! | TAAAGAACATAATCTCATAA+GGG | + | chr1.3:24830524-24830543 | None:intergenic | 20.0% |
| !! | TACTTTAATGAAGAGTAAAA+GGG | - | chr1.3:24831277-24831296 | MS.gene063247:intron | 20.0% |
| !! | TGAGAAAATAGGAAATTATA+TGG | + | chr1.3:24831343-24831362 | None:intergenic | 20.0% |
| !!! | TCTTTTTGAAATGTTTAGAA+TGG | - | chr1.3:24831696-24831715 | MS.gene063247:intron | 20.0% |
| !!! | TTACTCAGAATTTTTTGTAA+TGG | + | chr1.3:24832351-24832370 | None:intergenic | 20.0% |
| !!! | TTGTAATGGATAAATATCAT+GGG | + | chr1.3:24832337-24832356 | None:intergenic | 20.0% |
| !!! | TTTGTAATGGATAAATATCA+TGG | + | chr1.3:24832338-24832357 | None:intergenic | 20.0% |
| ! | ACATCTGTGATGATAATAAA+TGG | - | chr1.3:24831524-24831543 | MS.gene063247:CDS | 25.0% |
| ! | GAAAGTTTATGGATATAAGA+TGG | - | chr1.3:24831112-24831131 | MS.gene063247:intron | 25.0% |
| ! | GAGATTCTTGTCAAAATAAT+TGG | + | chr1.3:24830848-24830867 | None:intergenic | 25.0% |
| ! | GTACTTTAATGAAGAGTAAA+AGG | - | chr1.3:24831276-24831295 | MS.gene063247:intron | 25.0% |
| ! | TAAGCTATGAAAATAGCTTA+TGG | - | chr1.3:24831881-24831900 | MS.gene063247:intron | 25.0% |
| ! | TTGGTTGTCACATTTAATAA+TGG | - | chr1.3:24832151-24832170 | MS.gene063247:CDS | 25.0% |
| !! | AATTATGTTAGTCTCATTTG+AGG | - | chr1.3:24831405-24831424 | MS.gene063247:CDS | 25.0% |
| !! | CTATAAGTGAGTATATGTTT+TGG | - | chr1.3:24832132-24832151 | MS.gene063247:intron | 25.0% |
| !! | TCTATTTTCATAAGCTATCT+TGG | - | chr1.3:24831090-24831109 | MS.gene063247:intron | 25.0% |
| !!! | ATAATTGGCTTGCAAATATT+TGG | + | chr1.3:24830833-24830852 | None:intergenic | 25.0% |
| !!! | TCCATCTTTTTCATTCAATT+GGG | - | chr1.3:24832031-24832050 | MS.gene063247:intron | 25.0% |
| !!! | TGTAATGGATAAATATCATG+GGG | + | chr1.3:24832336-24832355 | None:intergenic | 25.0% |
| AAGCTATCTTGGAAAGTTTA+TGG | - | chr1.3:24831101-24831120 | MS.gene063247:intron | 30.0% | |
| AGAAAGGTAAGAAGAAATCA+TGG | - | chr1.3:24830622-24830641 | MS.gene063247:intron | 30.0% | |
| ATCAATCATCCAAGAAACAT+TGG | - | chr1.3:24831633-24831652 | MS.gene063247:intron | 30.0% | |
| CTCATGTTTAGGAAATAGAA+AGG | - | chr1.3:24830606-24830625 | MS.gene063247:intron | 30.0% | |
| CTTAGGAATCTTTGATACTT+TGG | - | chr1.3:24830792-24830811 | MS.gene063247:intron | 30.0% | |
| CTTATTCCATTGTTACATGA+AGG | - | chr1.3:24830441-24830460 | MS.gene063247:CDS | 30.0% | |
| CTTCATGTAACAATGGAATA+AGG | + | chr1.3:24830443-24830462 | None:intergenic | 30.0% | |
| GCAATAAATCACAATGCATT+TGG | + | chr1.3:24831304-24831323 | None:intergenic | 30.0% | |
| GCTTATGGACATATTATAAG+TGG | - | chr1.3:24831896-24831915 | MS.gene063247:intron | 30.0% | |
| GTCTTTGCTTGTTTACTTAT+TGG | - | chr1.3:24831252-24831271 | MS.gene063247:intron | 30.0% | |
| TCCCAATTGAATGAAAAAGA+TGG | + | chr1.3:24832035-24832054 | None:intergenic | 30.0% | |
| TTCATCACCTACAAATACAT+GGG | + | chr1.3:24832491-24832510 | None:intergenic | 30.0% | |
| ! | AGATTTTCACTTCAAAGTCA+AGG | - | chr1.3:24830395-24830414 | MS.gene063247:CDS | 30.0% |
| ! | ATAAGCATTTGAGATGGTTT+GGG | + | chr1.3:24831936-24831955 | None:intergenic | 30.0% |
| ! | CCAGAAGTATATGAGAAAAT+AGG | + | chr1.3:24831354-24831373 | None:intergenic | 30.0% |
| ! | CCTATTTTCTCATATACTTC+TGG | - | chr1.3:24831351-24831370 | MS.gene063247:CDS | 30.0% |
| ! | TAGTACTGAATTTGTGATCT+TGG | - | chr1.3:24832285-24832304 | MS.gene063247:CDS | 30.0% |
| ! | TTCTGAGTAAAACATTTTCG+AGG | - | chr1.3:24832361-24832380 | MS.gene063247:CDS | 30.0% |
| ! | TTTCTTACTTAGGGTTTGTT+TGG | + | chr1.3:24831991-24832010 | None:intergenic | 30.0% |
| ! | TTTTGACAAGAATCTCAAAG+AGG | - | chr1.3:24830852-24830871 | MS.gene063247:intron | 30.0% |
| !! | CTCCATCTTTTTCATTCAAT+TGG | - | chr1.3:24832030-24832049 | MS.gene063247:intron | 30.0% |
| !! | GCTGATTTGTTTCTTACTTA+GGG | + | chr1.3:24832000-24832019 | None:intergenic | 30.0% |
| !! | TGCTGATTTGTTTCTTACTT+AGG | + | chr1.3:24832001-24832020 | None:intergenic | 30.0% |
| AAAGAGCCTTCATGTAACAA+TGG | + | chr1.3:24830450-24830469 | None:intergenic | 35.0% | |
| AAATTGGTGAGACAGAATTG+TGG | - | chr1.3:24830767-24830786 | MS.gene063247:CDS | 35.0% | |
| AACTTGTGGTTGGAAGTTAT+TGG | - | chr1.3:24832254-24832273 | MS.gene063247:CDS | 35.0% | |
| AAGAAGCAGTGAATCTTATC+AGG | - | chr1.3:24832516-24832535 | MS.gene063247:intron | 35.0% | |
| AAGCAGTATTAGGTCATGTT+TGG | - | chr1.3:24831745-24831764 | MS.gene063247:intron | 35.0% | |
| AATATCACATGGTCATCATG+TGG | - | chr1.3:24830675-24830694 | MS.gene063247:intron | 35.0% | |
| ACATGATGACCATGTGATAT+TGG | + | chr1.3:24830676-24830695 | None:intergenic | 35.0% | |
| ACTGTCATAAGCATTTGAGA+TGG | + | chr1.3:24831942-24831961 | None:intergenic | 35.0% | |
| AGAGTAATAGCATGTGAATC+AGG | - | chr1.3:24832196-24832215 | MS.gene063247:CDS | 35.0% | |
| AGTCTGACAAGTACTTATGT+CGG | - | chr1.3:24831182-24831201 | MS.gene063247:intron | 35.0% | |
| CTCGAATGGAAGAACAAAAT+AGG | - | chr1.3:24830963-24830982 | MS.gene063247:intron | 35.0% | |
| CTTCATCACCTACAAATACA+TGG | + | chr1.3:24832492-24832511 | None:intergenic | 35.0% | |
| GGAATCTTTGATACTTTGGT+TGG | - | chr1.3:24830796-24830815 | MS.gene063247:intron | 35.0% | |
| GTAAGAAGAAATCATGGAGT+TGG | - | chr1.3:24830628-24830647 | MS.gene063247:intron | 35.0% | |
| GTGATACAAAGAGAGCAAAT+TGG | - | chr1.3:24830751-24830770 | MS.gene063247:CDS | 35.0% | |
| TCAGATGAAACATGCATCAT+AGG | - | chr1.3:24831497-24831516 | MS.gene063247:CDS | 35.0% | |
| TCTGTGATACCAATGTTTCT+TGG | + | chr1.3:24831645-24831664 | None:intergenic | 35.0% | |
| TGATAAGATTCACTGCTTCT+TGG | + | chr1.3:24832517-24832536 | None:intergenic | 35.0% | |
| ! | AGAACTGTTTTGTGTAGAGA+TGG | - | chr1.3:24831581-24831600 | MS.gene063247:CDS | 35.0% |
| ! | ATCAATGATGCTTTTGAGCT+TGG | - | chr1.3:24830934-24830953 | MS.gene063247:intron | 35.0% |
| ! | CATAAGCATTTGAGATGGTT+TGG | + | chr1.3:24831937-24831956 | None:intergenic | 35.0% |
| ! | TCAATGATGCTTTTGAGCTT+GGG | - | chr1.3:24830935-24830954 | MS.gene063247:intron | 35.0% |
| !! | AATGGCTATGTCGATTCATT+TGG | - | chr1.3:24831714-24831733 | MS.gene063247:intron | 35.0% |
| !! | ATGGCTATGTCGATTCATTT+GGG | - | chr1.3:24831715-24831734 | MS.gene063247:intron | 35.0% |
| !! | GAATTTCTATTGACTTGCAC+AGG | - | chr1.3:24830567-24830586 | MS.gene063247:intron | 35.0% |
| !! | GCTCAAAAGCATCATTGATT+TGG | + | chr1.3:24830933-24830952 | None:intergenic | 35.0% |
| !! | TTCTAAAGCTTCAGAACTTG+TGG | - | chr1.3:24832240-24832259 | MS.gene063247:CDS | 35.0% |
| !!! | TGATCTTTGTTTTTGCACCT+AGG | + | chr1.3:24831463-24831482 | None:intergenic | 35.0% |
| !!! | TGGTATCACAGACTTTTTTC+AGG | - | chr1.3:24831653-24831672 | MS.gene063247:intron | 35.0% |
| AAAGCTTCAGAACTTGTGGT+TGG | - | chr1.3:24832244-24832263 | MS.gene063247:CDS | 40.0% | |
| AGGTAATGCAACAGGTACAA+AGG | - | chr1.3:24832216-24832235 | MS.gene063247:CDS | 40.0% | |
| AGTTCTGTAATCTCCGATGT+TGG | + | chr1.3:24831567-24831586 | None:intergenic | 40.0% | |
| GAATCTTATCAGGCACATAG+AGG | - | chr1.3:24832526-24832545 | MS.gene063247:intron | 40.0% | |
| GAGACAGAATTGTGGTACTT+AGG | - | chr1.3:24830775-24830794 | MS.gene063247:CDS | 40.0% | |
| GATATTGGCATCATCCATGA+TGG | + | chr1.3:24830661-24830680 | None:intergenic | 40.0% | |
| GTGGAGCATGATTGGATTAA+TGG | - | chr1.3:24830697-24830716 | MS.gene063247:CDS | 40.0% | |
| TGAGTCTCCCATGTATTTGT+AGG | - | chr1.3:24832481-24832500 | MS.gene063247:intron | 40.0% | |
| TGCTCTCTTGAGTGTTTCTT+TGG | + | chr1.3:24831438-24831457 | None:intergenic | 40.0% | |
| TGGATGATGCCAATATCACA+TGG | - | chr1.3:24830664-24830683 | MS.gene063247:intron | 40.0% | |
| TGTGAATCAGGTAATGCAAC+AGG | - | chr1.3:24832208-24832227 | MS.gene063247:CDS | 40.0% | |
| TTTGTGATCTTGGCAAGCAA+TGG | - | chr1.3:24832295-24832314 | MS.gene063247:CDS | 40.0% | |
| ! | AGATGGTTTGGGAGAACTTA+TGG | + | chr1.3:24831925-24831944 | None:intergenic | 40.0% |
| !! | ATGTCGATTCATTTGGGAGA+TGG | - | chr1.3:24831721-24831740 | MS.gene063247:intron | 40.0% |
| AAACTCGTGCTAGCCAACAT+CGG | - | chr1.3:24831551-24831570 | MS.gene063247:CDS | 45.0% | |
| ATCACATGGTCATCATGTGG+TGG | - | chr1.3:24830678-24830697 | MS.gene063247:intron | 45.0% | |
| CGGGTGAAACTCTCATGTTT+AGG | - | chr1.3:24830595-24830614 | MS.gene063247:intron | 45.0% | |
| CTTGGCAAGCAATGGCATAT+GGG | - | chr1.3:24832303-24832322 | MS.gene063247:CDS | 45.0% | |
| GGCGTAGCTTATCAGACAAT+TGG | - | chr1.3:24831602-24831621 | MS.gene063247:intron | 45.0% | |
| GGGAGATGGAAAGCAGTATT+AGG | - | chr1.3:24831735-24831754 | MS.gene063247:intron | 45.0% | |
| TCTTGGCAAGCAATGGCATA+TGG | - | chr1.3:24832302-24832321 | MS.gene063247:CDS | 45.0% | |
| ! | AAACACTCTGCTGCTTCTTG+TGG | + | chr1.3:24832554-24832573 | None:intergenic | 45.0% |
| ! | ACAAGAAGCAGCAGAGTGTT+TGG | - | chr1.3:24832553-24832572 | MS.gene063247:intron | 45.0% |
| ! | ACACTCAAGAGAGCATACCT+AGG | - | chr1.3:24831443-24831462 | MS.gene063247:CDS | 45.0% |
| ! | ATCATGTGGTGGAGCATGAT+TGG | - | chr1.3:24830689-24830708 | MS.gene063247:intron | 45.0% |
| ! | GTGTTTGGCTAAGGAAGCAT+TGG | - | chr1.3:24832568-24832587 | MS.gene063247:intron | 45.0% |
| !! | ATTGACTTGCACAGGCACTT+CGG | - | chr1.3:24830575-24830594 | MS.gene063247:intron | 45.0% |
| !! | TGGCTAAGGAAGCATTGGTT+AGG | - | chr1.3:24832573-24832592 | MS.gene063247:intron | 45.0% |
| !!! | GTTTTTTTTAAAAAATAAAT+AGG | - | chr1.3:24832438-24832457 | MS.gene063247:intron | 5.0% |
| GAGTTGGAAGCAAGCCATCA+TGG | - | chr1.3:24830644-24830663 | MS.gene063247:intron | 50.0% | |
| ! | AGCAGCAGAGTGTTTGGCTA+AGG | - | chr1.3:24832559-24832578 | MS.gene063247:intron | 50.0% |
| !! | TTGACTTGCACAGGCACTTC+GGG | - | chr1.3:24830576-24830595 | MS.gene063247:intron | 50.0% |
| GAGCTTGGGAGACTCTCGAA+TGG | - | chr1.3:24830949-24830968 | MS.gene063247:intron | 55.0% | |
| GGCAAGCAATGGCATATGGG+AGG | - | chr1.3:24832306-24832325 | MS.gene063247:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 24830384 | 24832640 | 24830384 | ID=MS.gene063247 |
| chr1.3 | mRNA | 24830384 | 24832640 | 24830384 | ID=MS.gene063247.t1;Parent=MS.gene063247 |
| chr1.3 | exon | 24832608 | 24832640 | 24832608 | ID=MS.gene063247.t1.exon1;Parent=MS.gene063247.t1 |
| chr1.3 | CDS | 24832608 | 24832640 | 24832608 | ID=cds.MS.gene063247.t1;Parent=MS.gene063247.t1 |
| chr1.3 | exon | 24832151 | 24832435 | 24832151 | ID=MS.gene063247.t1.exon2;Parent=MS.gene063247.t1 |
| chr1.3 | CDS | 24832151 | 24832435 | 24832151 | ID=cds.MS.gene063247.t1;Parent=MS.gene063247.t1 |
| chr1.3 | exon | 24831350 | 24831608 | 24831350 | ID=MS.gene063247.t1.exon3;Parent=MS.gene063247.t1 |
| chr1.3 | CDS | 24831350 | 24831608 | 24831350 | ID=cds.MS.gene063247.t1;Parent=MS.gene063247.t1 |
| chr1.3 | exon | 24830697 | 24830794 | 24830697 | ID=MS.gene063247.t1.exon4;Parent=MS.gene063247.t1 |
| chr1.3 | CDS | 24830697 | 24830794 | 24830697 | ID=cds.MS.gene063247.t1;Parent=MS.gene063247.t1 |
| chr1.3 | exon | 24830384 | 24830521 | 24830384 | ID=MS.gene063247.t1.exon5;Parent=MS.gene063247.t1 |
| chr1.3 | CDS | 24830384 | 24830521 | 24830384 | ID=cds.MS.gene063247.t1;Parent=MS.gene063247.t1 |
| Gene Sequence |
| Protein sequence |
