Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064721.t1 | KEH36225.1 | 99.2 | 262 | 2 | 0 | 1 | 262 | 117 | 378 | 4.70E-139 | 503.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064721.t1 | A8MRV9 | 66.4 | 250 | 83 | 1 | 1 | 250 | 102 | 350 | 1.9e-88 | 327.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064721.t1 | A0A072VDH8 | 99.2 | 262 | 2 | 0 | 1 | 262 | 117 | 378 | 3.4e-139 | 503.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene064721 | -0.815528 | 8.83E-52 | -1.69E-46 |
| MS.gene049217 | MS.gene064721 | -0.822459 | 2.34E-53 | -1.69E-46 |
| MS.gene049222 | MS.gene064721 | -0.809722 | 1.64E-50 | -1.69E-46 |
| MS.gene049285 | MS.gene064721 | -0.807536 | 4.82E-50 | -1.69E-46 |
| MS.gene049320 | MS.gene064721 | -0.842694 | 2.21E-58 | -1.69E-46 |
| MS.gene049633 | MS.gene064721 | -0.800405 | 1.46E-48 | -1.69E-46 |
| MS.gene05010 | MS.gene064721 | -0.805805 | 1.12E-49 | -1.69E-46 |
| MS.gene050163 | MS.gene064721 | -0.805284 | 1.44E-49 | -1.69E-46 |
| MS.gene050170 | MS.gene064721 | -0.810704 | 1.01E-50 | -1.69E-46 |
| MS.gene050381 | MS.gene064721 | 0.803429 | 3.50E-49 | -1.69E-46 |
| MS.gene050504 | MS.gene064721 | -0.818233 | 2.18E-52 | -1.69E-46 |
| MS.gene050577 | MS.gene064721 | -0.816404 | 5.63E-52 | -1.69E-46 |
| MS.gene050612 | MS.gene064721 | -0.811898 | 5.56E-51 | -1.69E-46 |
| MS.gene050675 | MS.gene064721 | -0.805806 | 1.12E-49 | -1.69E-46 |
| MS.gene050699 | MS.gene064721 | -0.824525 | 7.70E-54 | -1.69E-46 |
| MS.gene050868 | MS.gene064721 | -0.804172 | 2.45E-49 | -1.69E-46 |
| MS.gene050871 | MS.gene064721 | -0.803742 | 3.01E-49 | -1.69E-46 |
| MS.gene050986 | MS.gene064721 | -0.824337 | 8.53E-54 | -1.69E-46 |
| MS.gene051127 | MS.gene064721 | 0.809239 | 2.09E-50 | -1.69E-46 |
| MS.gene052164 | MS.gene064721 | -0.803799 | 2.93E-49 | -1.69E-46 |
| MS.gene052482 | MS.gene064721 | -0.821185 | 4.62E-53 | -1.69E-46 |
| MS.gene052486 | MS.gene064721 | -0.825644 | 4.19E-54 | -1.69E-46 |
| MS.gene052503 | MS.gene064721 | -0.815416 | 9.35E-52 | -1.69E-46 |
| MS.gene052823 | MS.gene064721 | -0.812298 | 4.55E-51 | -1.69E-46 |
| MS.gene052825 | MS.gene064721 | -0.810244 | 1.27E-50 | -1.69E-46 |
| MS.gene053203 | MS.gene064721 | -0.805175 | 1.52E-49 | -1.69E-46 |
| MS.gene053213 | MS.gene064721 | -0.808017 | 3.81E-50 | -1.69E-46 |
| MS.gene053286 | MS.gene064721 | -0.80426 | 2.35E-49 | -1.69E-46 |
| MS.gene053420 | MS.gene064721 | 0.821304 | 4.34E-53 | -1.69E-46 |
| MS.gene053436 | MS.gene064721 | -0.801424 | 9.06E-49 | -1.69E-46 |
| MS.gene053480 | MS.gene064721 | -0.831497 | 1.61E-55 | -1.69E-46 |
| MS.gene053549 | MS.gene064721 | 0.831018 | 2.12E-55 | -1.69E-46 |
| MS.gene053574 | MS.gene064721 | -0.815521 | 8.86E-52 | -1.69E-46 |
| MS.gene054595 | MS.gene064721 | -0.801499 | 8.75E-49 | -1.69E-46 |
| MS.gene054600 | MS.gene064721 | -0.80463 | 1.97E-49 | -1.69E-46 |
| MS.gene054708 | MS.gene064721 | 0.80093 | 1.14E-48 | -1.69E-46 |
| MS.gene05470 | MS.gene064721 | -0.829431 | 5.17E-55 | -1.69E-46 |
| MS.gene055289 | MS.gene064721 | -0.803638 | 3.17E-49 | -1.69E-46 |
| MS.gene055362 | MS.gene064721 | -0.838835 | 2.27E-57 | -1.69E-46 |
| MS.gene055502 | MS.gene064721 | -0.823855 | 1.11E-53 | -1.69E-46 |
| MS.gene05589 | MS.gene064721 | -0.82667 | 2.39E-54 | -1.69E-46 |
| MS.gene056504 | MS.gene064721 | -0.826875 | 2.13E-54 | -1.69E-46 |
| MS.gene056657 | MS.gene064721 | -0.821875 | 3.20E-53 | -1.69E-46 |
| MS.gene057831 | MS.gene064721 | -0.815791 | 7.71E-52 | -1.69E-46 |
| MS.gene05837 | MS.gene064721 | -0.817431 | 3.31E-52 | -1.69E-46 |
| MS.gene058419 | MS.gene064721 | -0.828003 | 1.14E-54 | -1.69E-46 |
| MS.gene058544 | MS.gene064721 | -0.814549 | 1.46E-51 | -1.69E-46 |
| MS.gene059022 | MS.gene064721 | -0.829052 | 6.39E-55 | -1.69E-46 |
| MS.gene059023 | MS.gene064721 | -0.812811 | 3.51E-51 | -1.69E-46 |
| MS.gene059223 | MS.gene064721 | 0.809536 | 1.80E-50 | -1.69E-46 |
| MS.gene059677 | MS.gene064721 | -0.825603 | 4.29E-54 | -1.69E-46 |
| MS.gene059718 | MS.gene064721 | -0.806324 | 8.70E-50 | -1.69E-46 |
| MS.gene059865 | MS.gene064721 | -0.800022 | 1.75E-48 | -1.69E-46 |
| MS.gene060762 | MS.gene064721 | -0.806832 | 6.79E-50 | -1.69E-46 |
| MS.gene060778 | MS.gene064721 | -0.807269 | 5.49E-50 | -1.69E-46 |
| MS.gene06077 | MS.gene064721 | -0.84098 | 6.27E-58 | -1.69E-46 |
| MS.gene060982 | MS.gene064721 | -0.800437 | 1.44E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064721.t1 | MTR_3g112530 | 99.237 | 262 | 2 | 0 | 1 | 262 | 117 | 378 | 0.0 | 524 |
| MS.gene064721.t1 | MTR_4g049640 | 69.231 | 247 | 75 | 1 | 2 | 248 | 120 | 365 | 2.08e-114 | 333 |
| MS.gene064721.t1 | MTR_4g132400 | 56.078 | 255 | 110 | 2 | 2 | 255 | 114 | 367 | 5.05e-89 | 268 |
| MS.gene064721.t1 | MTR_4g101880 | 44.231 | 260 | 138 | 4 | 2 | 257 | 252 | 508 | 1.02e-64 | 211 |
| MS.gene064721.t1 | MTR_0549s0020 | 43.629 | 259 | 139 | 4 | 2 | 257 | 231 | 485 | 3.14e-64 | 209 |
| MS.gene064721.t1 | MTR_6g034030 | 42.857 | 259 | 141 | 4 | 2 | 257 | 303 | 557 | 4.88e-63 | 208 |
| MS.gene064721.t1 | MTR_6g045200 | 43.243 | 259 | 140 | 4 | 2 | 257 | 294 | 548 | 5.73e-63 | 207 |
| MS.gene064721.t1 | MTR_6g034030 | 48.023 | 177 | 90 | 2 | 2 | 178 | 303 | 477 | 2.18e-50 | 172 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064721.t1 | AT1G62262 | 65.613 | 253 | 86 | 1 | 1 | 253 | 102 | 353 | 1.83e-119 | 346 |
| MS.gene064721.t1 | AT1G62280 | 64.314 | 255 | 89 | 2 | 2 | 256 | 111 | 363 | 5.90e-118 | 343 |
| MS.gene064721.t1 | AT4G27970 | 44.444 | 261 | 134 | 5 | 2 | 257 | 60 | 314 | 2.39e-67 | 213 |
| MS.gene064721.t1 | AT4G27970 | 44.444 | 261 | 134 | 5 | 2 | 257 | 60 | 314 | 2.39e-67 | 213 |
| MS.gene064721.t1 | AT5G24030 | 44.444 | 261 | 134 | 5 | 2 | 257 | 324 | 578 | 1.13e-65 | 216 |
| MS.gene064721.t1 | AT4G27970 | 44.444 | 261 | 134 | 5 | 2 | 257 | 209 | 463 | 1.60e-65 | 213 |
| MS.gene064721.t1 | AT4G27970 | 44.444 | 261 | 134 | 5 | 2 | 257 | 209 | 463 | 1.60e-65 | 213 |
| MS.gene064721.t1 | AT1G12480 | 45.211 | 261 | 135 | 5 | 2 | 257 | 254 | 511 | 6.25e-59 | 196 |
| MS.gene064721.t1 | AT5G24030 | 48.649 | 185 | 89 | 3 | 2 | 184 | 324 | 504 | 8.03e-52 | 176 |
| MS.gene064721.t1 | AT4G27970 | 49.162 | 179 | 85 | 3 | 2 | 178 | 209 | 383 | 1.40e-49 | 168 |
| MS.gene064721.t1 | AT4G27970 | 49.162 | 179 | 85 | 3 | 2 | 178 | 209 | 383 | 1.40e-49 | 168 |
Find 62 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATTACTTATTTAATTCTA+TGG | 0.220811 | 3.4:+97527839 | MS.gene064721:CDS |
| ATTAGGGATGGTGCATTATT+TGG | 0.229252 | 3.4:+97528050 | MS.gene064721:CDS |
| TTTATCGGTAATAGGGAATT+TGG | 0.236056 | 3.4:+97527969 | MS.gene064721:CDS |
| ACAAGTCATTTATCGGTAAT+AGG | 0.252404 | 3.4:+97527961 | MS.gene064721:CDS |
| AGAGAATGAGCATTAGAATA+TGG | 0.254966 | 3.4:-97529715 | None:intergenic |
| AATTAAATAAGTAATGGTTT+TGG | 0.294154 | 3.4:-97527833 | None:intergenic |
| GTTGAATTAAACAGGTTTGC+AGG | 0.323138 | 3.4:+97529570 | MS.gene064721:intron |
| TTCTTGTTCTTTGCAGCACC+TGG | 0.340908 | 3.4:+97528144 | MS.gene064721:CDS |
| GTTCTCGACGTTAAAATTTA+CGG | 0.348977 | 3.4:+97527886 | MS.gene064721:CDS |
| CCAGTGACATGAAGAGGAAT+AGG | 0.350256 | 3.4:-97528239 | None:intergenic |
| AGCACCTGGTGTGGCTAGTC+TGG | 0.355273 | 3.4:+97528158 | MS.gene064721:CDS |
| CAAGTCATTTATCGGTAATA+GGG | 0.357344 | 3.4:+97527962 | MS.gene064721:CDS |
| AGCGCAAGCTGCAGCAGAAA+TGG | 0.373631 | 3.4:+97527996 | MS.gene064721:CDS |
| CTTGCAATGGGATCGTTATC+TGG | 0.374425 | 3.4:-97529806 | None:intergenic |
| GCCATAGCAAGTACGGTAAC+AGG | 0.385140 | 3.4:-97529653 | None:intergenic |
| GCAAAGAACAAGAAGAAAAC+TGG | 0.389582 | 3.4:-97528135 | None:intergenic |
| TTCTCATAGATCTCTTGAAT+AGG | 0.405405 | 3.4:-97529598 | None:intergenic |
| CTGGTGTGGCTAGTCTGGCT+TGG | 0.416273 | 3.4:+97528163 | MS.gene064721:CDS |
| TACTTATTTAATTCTATGGT+GGG | 0.421001 | 3.4:+97527843 | MS.gene064721:CDS |
| TACGGTCAGTGGTTTACTAA+AGG | 0.421425 | 3.4:+97527904 | MS.gene064721:CDS |
| TCTCATAGATCTCTTGAATA+GGG | 0.431380 | 3.4:-97529597 | None:intergenic |
| ACGGTCAGTGGTTTACTAAA+GGG | 0.432203 | 3.4:+97527905 | MS.gene064721:CDS |
| TATTCTAATGCTCATTCTCT+TGG | 0.436966 | 3.4:+97529718 | MS.gene064721:CDS |
| TCCTGTTACCGTACTTGCTA+TGG | 0.437754 | 3.4:+97529652 | MS.gene064721:CDS |
| GAATCCGACAAGTCATTTAT+CGG | 0.442075 | 3.4:+97527954 | MS.gene064721:CDS |
| CTGGCTTGGGAATCTATTGT+TGG | 0.443643 | 3.4:+97528177 | MS.gene064721:CDS |
| TGGTGTGGCTAGTCTGGCTT+GGG | 0.445650 | 3.4:+97528164 | MS.gene064721:CDS |
| CCTATTCCTCTTCATGTCAC+TGG | 0.453775 | 3.4:+97528239 | MS.gene064721:CDS |
| ATTACCGATAAATGACTTGT+CGG | 0.460048 | 3.4:-97527958 | None:intergenic |
| GAGAATGAGCATTAGAATAT+GGG | 0.464878 | 3.4:-97529714 | None:intergenic |
| GCGCAAGCTGCAGCAGAAAT+GGG | 0.477434 | 3.4:+97527997 | MS.gene064721:CDS |
| ATCGTCTTCCTGCGTTGTTA+AGG | 0.478539 | 3.4:+97528112 | MS.gene064721:CDS |
| ACACTTTATCAAAGGTTGTC+TGG | 0.479220 | 3.4:+97528084 | MS.gene064721:CDS |
| TCGGTAATAGGGAATTTGGT+TGG | 0.484237 | 3.4:+97527973 | MS.gene064721:CDS |
| CCATAGAATTAAATAAGTAA+TGG | 0.499411 | 3.4:-97527839 | None:intergenic |
| AACAATGAGGATGCTTGCAA+TGG | 0.505203 | 3.4:-97529819 | None:intergenic |
| ACGTTAAAATTTACGGTCAG+TGG | 0.514110 | 3.4:+97527893 | MS.gene064721:CDS |
| ATAGATCTCTTGAATAGGGC+TGG | 0.514231 | 3.4:-97529593 | None:intergenic |
| CAGTGACATGAAGAGGAATA+GGG | 0.514535 | 3.4:-97528238 | None:intergenic |
| TGTAGAAGCCATAGCAAGTA+CGG | 0.530020 | 3.4:-97529660 | None:intergenic |
| ACAATGAGGATGCTTGCAAT+GGG | 0.531962 | 3.4:-97529818 | None:intergenic |
| AATAGAAACCATGAAATCCA+TGG | 0.536211 | 3.4:-97527784 | None:intergenic |
| TTACTTATTTAATTCTATGG+TGG | 0.536757 | 3.4:+97527842 | MS.gene064721:CDS |
| AAGGTTTAATGTTGCATGGT+GGG | 0.544626 | 3.4:+97529619 | MS.gene064721:CDS |
| TATATACCAGTGACATGAAG+AGG | 0.567022 | 3.4:-97528245 | None:intergenic |
| AAGCTGCAGCAGAAATGGGT+TGG | 0.584214 | 3.4:+97528001 | MS.gene064721:CDS |
| AGCAAGTACGGTAACAGGAA+AGG | 0.591295 | 3.4:-97529648 | None:intergenic |
| TGTTTGTGACACTTTATCAA+AGG | 0.592867 | 3.4:+97528076 | MS.gene064721:CDS |
| TATTCAAGAGATCTATGAGA+AGG | 0.595617 | 3.4:+97529600 | MS.gene064721:CDS |
| TTTAACGTCGAGAACAACCA+CGG | 0.596366 | 3.4:-97527878 | None:intergenic |
| GTTCTTTGCAGCACCTGGTG+TGG | 0.596453 | 3.4:+97528149 | MS.gene064721:CDS |
| CAAGCCAGACTAGCCACACC+AGG | 0.597287 | 3.4:-97528162 | None:intergenic |
| GAAGAATTCTTACACCATGT+AGG | 0.606055 | 3.4:+97527742 | MS.gene064721:CDS |
| AGTGGTTTACTAAAGGGAAG+AGG | 0.608283 | 3.4:+97527911 | MS.gene064721:CDS |
| AATAAATGAATTAAACAATG+AGG | 0.610002 | 3.4:-97529832 | None:intergenic |
| AATTATGCACAACAAGTCAA+AGG | 0.620636 | 3.4:+97529683 | MS.gene064721:CDS |
| TGAGAAGGTTTAATGTTGCA+TGG | 0.624928 | 3.4:+97529615 | MS.gene064721:CDS |
| AAAGATAGTTAACTCCTACA+TGG | 0.643665 | 3.4:-97527756 | None:intergenic |
| TTAACGTCGAGAACAACCAC+GGG | 0.646771 | 3.4:-97527877 | None:intergenic |
| CTTTATCAAAGGTTGTCTGG+TGG | 0.678296 | 3.4:+97528087 | MS.gene064721:CDS |
| AAAACTGGCCTTAACAACGC+AGG | 0.680269 | 3.4:-97528120 | None:intergenic |
| GAAGGTTTAATGTTGCATGG+TGG | 0.712532 | 3.4:+97529618 | MS.gene064721:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAATAAAAAAAATA+AGG | - | chr3.4:97529141-97529160 | None:intergenic | 0.0% |
| !!! | TTTTTTTATTTTTTTTTTTT+TGG | + | chr3.4:97529144-97529163 | MS.gene064721:intron | 0.0% |
| !! | ATGTAACTTAATTAATTATT+AGG | - | chr3.4:97529505-97529524 | None:intergenic | 10.0% |
| !! | TAAATATTAATCAATATTTC+AGG | - | chr3.4:97529544-97529563 | None:intergenic | 10.0% |
| !! | TATTTAATATTTCAAAATTG+AGG | + | chr3.4:97528594-97528613 | MS.gene064721:intron | 10.0% |
| !!! | AATTAGTATTTTGAATTATA+TGG | + | chr3.4:97529312-97529331 | MS.gene064721:intron | 10.0% |
| !! | AAATAAATCATTATCTTCAT+AGG | - | chr3.4:97528575-97528594 | None:intergenic | 15.0% |
| !! | AACAATTTATAATATAGTCA+TGG | + | chr3.4:97528459-97528478 | MS.gene064721:intron | 15.0% |
| !! | AATAAATCATTATCTTCATA+GGG | - | chr3.4:97528574-97528593 | None:intergenic | 15.0% |
| !! | ATTAAGTTACATAAAATTCA+AGG | + | chr3.4:97529513-97529532 | MS.gene064721:intron | 15.0% |
| !! | TAATTTATGTTGAATTAAAC+AGG | + | chr3.4:97529562-97529581 | MS.gene064721:intron | 15.0% |
| !!! | AATAAATGATGATTTTGTAA+AGG | - | chr3.4:97528343-97528362 | None:intergenic | 15.0% |
| !!! | AATTAAATAAGTAATGGTTT+TGG | - | chr3.4:97527836-97527855 | None:intergenic | 15.0% |
| !!! | ATTAAATAAGTAATGGTTTT+GGG | - | chr3.4:97527835-97527854 | None:intergenic | 15.0% |
| !!! | TATAAAGTCACTTATAATTT+TGG | + | chr3.4:97528491-97528510 | MS.gene064721:intron | 15.0% |
| !!! | TTTTTTTTTTTTGGTACAAA+TGG | + | chr3.4:97529153-97529172 | MS.gene064721:intron | 15.0% |
| !! | AAATTCAAACTTATCAATTG+AGG | - | chr3.4:97529359-97529378 | None:intergenic | 20.0% |
| !! | AACAACTACAGTTTAAATTA+GGG | - | chr3.4:97528526-97528545 | None:intergenic | 20.0% |
| !! | ATCATCATTTATTAATGATG+TGG | + | chr3.4:97528350-97528369 | MS.gene064721:intron | 20.0% |
| !! | CATGTACTTATAAATTGATA+GGG | - | chr3.4:97529053-97529072 | None:intergenic | 20.0% |
| !! | CCATAGAATTAAATAAGTAA+TGG | - | chr3.4:97527842-97527861 | None:intergenic | 20.0% |
| !! | CCATTACTTATTTAATTCTA+TGG | + | chr3.4:97527839-97527858 | MS.gene064721:CDS | 20.0% |
| !! | TACTTATTTAATTCTATGGT+GGG | + | chr3.4:97527843-97527862 | MS.gene064721:CDS | 20.0% |
| !! | TTACTTATTTAATTCTATGG+TGG | + | chr3.4:97527842-97527861 | MS.gene064721:CDS | 20.0% |
| !!! | TTTTACAAAAAAATTCTGGT+AGG | + | chr3.4:97529006-97529025 | MS.gene064721:intron | 20.0% |
| !!! | TTTTACAAAGTATGATAGAA+AGG | + | chr3.4:97528406-97528425 | MS.gene064721:intron | 20.0% |
| ! | CAACAACTACAGTTTAAATT+AGG | - | chr3.4:97528527-97528546 | None:intergenic | 25.0% |
| ! | CAAGTAACTGTCAATTAATA+AGG | - | chr3.4:97529185-97529204 | None:intergenic | 25.0% |
| ! | GCATGTACTTATAAATTGAT+AGG | - | chr3.4:97529054-97529073 | None:intergenic | 25.0% |
| ! | TCAACAAAGTTGTCATTAAA+TGG | - | chr3.4:97528810-97528829 | None:intergenic | 25.0% |
| ! | TCATTTCTATTAGACAAAAC+AGG | + | chr3.4:97528962-97528981 | MS.gene064721:intron | 25.0% |
| ! | TTAATCTCTACATAGAGAAT+AGG | + | chr3.4:97529394-97529413 | MS.gene064721:intron | 25.0% |
| ! | TTGATAAGTTTGAATTTACC+CGG | + | chr3.4:97529362-97529381 | MS.gene064721:intron | 25.0% |
| !! | GGCTTTTTACAAAAAAATTC+TGG | + | chr3.4:97529002-97529021 | MS.gene064721:intron | 25.0% |
| !!! | TAGAGATTAATCTTTAGAAC+CGG | - | chr3.4:97529384-97529403 | None:intergenic | 25.0% |
| !!! | TTTTTTTGGTACAAATGGAA+AGG | + | chr3.4:97529158-97529177 | MS.gene064721:intron | 25.0% |
| AAAACAATGGAGAGAGAAAA+AGG | + | chr3.4:97528861-97528880 | MS.gene064721:intron | 30.0% | |
| AAAGATAGTTAACTCCTACA+TGG | - | chr3.4:97527759-97527778 | None:intergenic | 30.0% | |
| AATAGAAACCATGAAATCCA+TGG | - | chr3.4:97527787-97527806 | None:intergenic | 30.0% | |
| AATTATGCACAACAAGTCAA+AGG | + | chr3.4:97529683-97529702 | MS.gene064721:CDS | 30.0% | |
| ACAAGTCATTTATCGGTAAT+AGG | + | chr3.4:97527961-97527980 | MS.gene064721:CDS | 30.0% | |
| ACTTATCAATTGAGGTTAAG+TGG | - | chr3.4:97529351-97529370 | None:intergenic | 30.0% | |
| AGAGAATGAGCATTAGAATA+TGG | - | chr3.4:97529718-97529737 | None:intergenic | 30.0% | |
| CAAGTCATTTATCGGTAATA+GGG | + | chr3.4:97527962-97527981 | MS.gene064721:CDS | 30.0% | |
| GAGAATGAGCATTAGAATAT+GGG | - | chr3.4:97529717-97529736 | None:intergenic | 30.0% | |
| GTTCTCGACGTTAAAATTTA+CGG | + | chr3.4:97527886-97527905 | MS.gene064721:CDS | 30.0% | |
| TAGATAACATGACTTGACAT+TGG | - | chr3.4:97529264-97529283 | None:intergenic | 30.0% | |
| TAGGGACATTCTATATTGTA+CGG | - | chr3.4:97529035-97529054 | None:intergenic | 30.0% | |
| TATTCAAGAGATCTATGAGA+AGG | + | chr3.4:97529600-97529619 | MS.gene064721:CDS | 30.0% | |
| TATTCTAATGCTCATTCTCT+TGG | + | chr3.4:97529718-97529737 | MS.gene064721:CDS | 30.0% | |
| TCTCATAGATCTCTTGAATA+GGG | - | chr3.4:97529600-97529619 | None:intergenic | 30.0% | |
| TGTTTGTGACACTTTATCAA+AGG | + | chr3.4:97528076-97528095 | MS.gene064721:CDS | 30.0% | |
| TTCTCATAGATCTCTTGAAT+AGG | - | chr3.4:97529601-97529620 | None:intergenic | 30.0% | |
| TTTATCGGTAATAGGGAATT+TGG | + | chr3.4:97527969-97527988 | MS.gene064721:CDS | 30.0% | |
| ! | ATTACCGATAAATGACTTGT+CGG | - | chr3.4:97527961-97527980 | None:intergenic | 30.0% |
| ! | CTTGATTTTGTGCTGTAATT+TGG | + | chr3.4:97529096-97529115 | MS.gene064721:intron | 30.0% |
| !! | AGAGATTAATCTTTAGAACC+GGG | - | chr3.4:97529383-97529402 | None:intergenic | 30.0% |
| !! | CTGTGTGTTTGTTTTCATTA+GGG | + | chr3.4:97528034-97528053 | MS.gene064721:CDS | 30.0% |
| !!! | AACCACTTTTTGACAACTTT+TGG | - | chr3.4:97528933-97528952 | None:intergenic | 30.0% |
| AAGGTTTAATGTTGCATGGT+GGG | + | chr3.4:97529619-97529638 | MS.gene064721:CDS | 35.0% | |
| ACACTTTATCAAAGGTTGTC+TGG | + | chr3.4:97528084-97528103 | MS.gene064721:CDS | 35.0% | |
| ACGTTAAAATTTACGGTCAG+TGG | + | chr3.4:97527893-97527912 | MS.gene064721:CDS | 35.0% | |
| AGCAAGAAGTGAGAAAAACA+AGG | - | chr3.4:97528836-97528855 | None:intergenic | 35.0% | |
| ATTAGGGATGGTGCATTATT+TGG | + | chr3.4:97528050-97528069 | MS.gene064721:CDS | 35.0% | |
| GAAGAATTCTTACACCATGT+AGG | + | chr3.4:97527742-97527761 | MS.gene064721:CDS | 35.0% | |
| GAATCCGACAAGTCATTTAT+CGG | + | chr3.4:97527954-97527973 | MS.gene064721:CDS | 35.0% | |
| GCAAAGAACAAGAAGAAAAC+TGG | - | chr3.4:97528138-97528157 | None:intergenic | 35.0% | |
| GTAAACCTTGTCATTACTTG+AGG | - | chr3.4:97528647-97528666 | None:intergenic | 35.0% | |
| GTCCAAAAGTTGTCAAAAAG+TGG | + | chr3.4:97528928-97528947 | MS.gene064721:intron | 35.0% | |
| GTTGAATTAAACAGGTTTGC+AGG | + | chr3.4:97529570-97529589 | MS.gene064721:intron | 35.0% | |
| TATATACCAGTGACATGAAG+AGG | - | chr3.4:97528248-97528267 | None:intergenic | 35.0% | |
| TGAGAAGGTTTAATGTTGCA+TGG | + | chr3.4:97529615-97529634 | MS.gene064721:CDS | 35.0% | |
| TGTAATTTGGACGTACAAGA+TGG | + | chr3.4:97529109-97529128 | MS.gene064721:intron | 35.0% | |
| TTCTTGCTGGTCAAAAACAA+TGG | + | chr3.4:97528848-97528867 | MS.gene064721:intron | 35.0% | |
| ! | TTAACTATCTTTTCGCTCCA+TGG | + | chr3.4:97527767-97527786 | MS.gene064721:CDS | 35.0% |
| !! | AAAGCCAATAGTGTTGACTA+AGG | - | chr3.4:97528988-97529007 | None:intergenic | 35.0% |
| !! | GCTGTGTGTTTGTTTTCATT+AGG | + | chr3.4:97528033-97528052 | MS.gene064721:CDS | 35.0% |
| !! | GTGTTTGTTTTCATTAGGGA+TGG | + | chr3.4:97528038-97528057 | MS.gene064721:CDS | 35.0% |
| !! | TTGTTTTTCTCACTTCTTGC+TGG | + | chr3.4:97528835-97528854 | MS.gene064721:intron | 35.0% |
| !!! | AATTCTATGGTGGGTTTTCA+CGG | + | chr3.4:97527852-97527871 | MS.gene064721:CDS | 35.0% |
| !!! | GAAGAGGTCATTTTTAACGA+CGG | + | chr3.4:97527927-97527946 | MS.gene064721:CDS | 35.0% |
| AACAATGAGGATGCTTGCAA+TGG | - | chr3.4:97529822-97529841 | None:intergenic | 40.0% | |
| ACAATGAGGATGCTTGCAAT+GGG | - | chr3.4:97529821-97529840 | None:intergenic | 40.0% | |
| ACATGACTTGACATTGGAGT+TGG | - | chr3.4:97529258-97529277 | None:intergenic | 40.0% | |
| ACGGTCAGTGGTTTACTAAA+GGG | + | chr3.4:97527905-97527924 | MS.gene064721:CDS | 40.0% | |
| AGTGGTTTACTAAAGGGAAG+AGG | + | chr3.4:97527911-97527930 | MS.gene064721:CDS | 40.0% | |
| ATAGATCTCTTGAATAGGGC+TGG | - | chr3.4:97529596-97529615 | None:intergenic | 40.0% | |
| ATTGGAGTTGGACAGATTGT+AGG | - | chr3.4:97529246-97529265 | None:intergenic | 40.0% | |
| CAGTGACATGAAGAGGAATA+GGG | - | chr3.4:97528241-97528260 | None:intergenic | 40.0% | |
| CTCTTCCTCAAGTAATGACA+AGG | + | chr3.4:97528639-97528658 | MS.gene064721:intron | 40.0% | |
| CTTTATCAAAGGTTGTCTGG+TGG | + | chr3.4:97528087-97528106 | MS.gene064721:CDS | 40.0% | |
| GAAGGTTTAATGTTGCATGG+TGG | + | chr3.4:97529618-97529637 | MS.gene064721:CDS | 40.0% | |
| GTAATGACAAGGTTTACAGC+TGG | + | chr3.4:97528650-97528669 | MS.gene064721:intron | 40.0% | |
| GTTGGACAGATTGTAGGAAA+AGG | - | chr3.4:97529240-97529259 | None:intergenic | 40.0% | |
| TACGGTCAGTGGTTTACTAA+AGG | + | chr3.4:97527904-97527923 | MS.gene064721:CDS | 40.0% | |
| TCGGTAATAGGGAATTTGGT+TGG | + | chr3.4:97527973-97527992 | MS.gene064721:CDS | 40.0% | |
| TGTAGAAGCCATAGCAAGTA+CGG | - | chr3.4:97529663-97529682 | None:intergenic | 40.0% | |
| TTTAACGTCGAGAACAACCA+CGG | - | chr3.4:97527881-97527900 | None:intergenic | 40.0% | |
| TTTGGACGTACAAGATGGAA+AGG | + | chr3.4:97529114-97529133 | MS.gene064721:intron | 40.0% | |
| ! | TTTTCGCTCCATGGATTTCA+TGG | + | chr3.4:97527776-97527795 | MS.gene064721:CDS | 40.0% |
| !! | GGACAAAAAGAAGAGCATCT+TGG | - | chr3.4:97528220-97528239 | None:intergenic | 40.0% |
| !!! | ATGGTTTTGGGAGCTATGAA+TGG | - | chr3.4:97527823-97527842 | None:intergenic | 40.0% |
| AGCAAGTACGGTAACAGGAA+AGG | - | chr3.4:97529651-97529670 | None:intergenic | 45.0% | |
| ATCGTCTTCCTGCGTTGTTA+AGG | + | chr3.4:97528112-97528131 | MS.gene064721:CDS | 45.0% | |
| CAGGCCTTAGTCAACACTAT+TGG | + | chr3.4:97528981-97529000 | MS.gene064721:intron | 45.0% | |
| CCAGTGACATGAAGAGGAAT+AGG | - | chr3.4:97528242-97528261 | None:intergenic | 45.0% | |
| CCTATTCCTCTTCATGTCAC+TGG | + | chr3.4:97528239-97528258 | MS.gene064721:CDS | 45.0% | |
| CTTGCAATGGGATCGTTATC+TGG | - | chr3.4:97529809-97529828 | None:intergenic | 45.0% | |
| TTAACGTCGAGAACAACCAC+GGG | - | chr3.4:97527880-97527899 | None:intergenic | 45.0% | |
| TTCTTGTTCTTTGCAGCACC+TGG | + | chr3.4:97528144-97528163 | MS.gene064721:CDS | 45.0% | |
| ! | TCCTGTTACCGTACTTGCTA+TGG | + | chr3.4:97529652-97529671 | MS.gene064721:CDS | 45.0% |
| !! | AAAACTGGCCTTAACAACGC+AGG | - | chr3.4:97528123-97528142 | None:intergenic | 45.0% |
| !! | CTGGCTTGGGAATCTATTGT+TGG | + | chr3.4:97528177-97528196 | MS.gene064721:CDS | 45.0% |
| AAGCTGCAGCAGAAATGGGT+TGG | + | chr3.4:97528001-97528020 | MS.gene064721:CDS | 50.0% | |
| GCCATAGCAAGTACGGTAAC+AGG | - | chr3.4:97529656-97529675 | None:intergenic | 50.0% | |
| AGCGCAAGCTGCAGCAGAAA+TGG | + | chr3.4:97527996-97528015 | MS.gene064721:CDS | 55.0% | |
| GCGCAAGCTGCAGCAGAAAT+GGG | + | chr3.4:97527997-97528016 | MS.gene064721:CDS | 55.0% | |
| GTTCTTTGCAGCACCTGGTG+TGG | + | chr3.4:97528149-97528168 | MS.gene064721:CDS | 55.0% | |
| !! | TGGTGTGGCTAGTCTGGCTT+GGG | + | chr3.4:97528164-97528183 | MS.gene064721:CDS | 55.0% |
| ! | AGCACCTGGTGTGGCTAGTC+TGG | + | chr3.4:97528158-97528177 | MS.gene064721:CDS | 60.0% |
| ! | CAAGCCAGACTAGCCACACC+AGG | - | chr3.4:97528165-97528184 | None:intergenic | 60.0% |
| ! | GTGGGTTTTCACGGTTCCCG+TGG | + | chr3.4:97527861-97527880 | MS.gene064721:CDS | 60.0% |
| !! | CTGGTGTGGCTAGTCTGGCT+TGG | + | chr3.4:97528163-97528182 | MS.gene064721:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 97527733 | 97529844 | 97527733 | ID=MS.gene064721 |
| chr3.4 | mRNA | 97527733 | 97529844 | 97527733 | ID=MS.gene064721.t1;Parent=MS.gene064721 |
| chr3.4 | exon | 97527733 | 97528260 | 97527733 | ID=MS.gene064721.t1.exon1;Parent=MS.gene064721.t1 |
| chr3.4 | CDS | 97527733 | 97528260 | 97527733 | ID=cds.MS.gene064721.t1;Parent=MS.gene064721.t1 |
| chr3.4 | exon | 97529584 | 97529844 | 97529584 | ID=MS.gene064721.t1.exon2;Parent=MS.gene064721.t1 |
| chr3.4 | CDS | 97529584 | 97529844 | 97529584 | ID=cds.MS.gene064721.t1;Parent=MS.gene064721.t1 |
| Gene Sequence |
| Protein sequence |
