AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene065166


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene065166.t1 MTR_2g080040 96.216 370 8 3 1 367 1 367 0.0 720
MS.gene065166.t1 MTR_2g090155 75.745 235 57 0 131 365 77 311 3.39e-139 399
MS.gene065166.t1 MTR_2g090155 75.745 235 57 0 131 365 77 311 6.30e-139 399
MS.gene065166.t1 MTR_2g090155 74.043 235 56 1 131 365 77 306 6.71e-132 381
MS.gene065166.t1 MTR_1g075540 29.032 186 120 6 177 359 9 185 1.30e-14 72.0
MS.gene065166.t1 MTR_2g090170 72.000 50 13 1 295 343 20 69 2.26e-14 67.8
MS.gene065166.t1 MTR_1g106775 27.273 176 125 2 180 353 85 259 4.99e-14 71.6
MS.gene065166.t1 MTR_6g038540 24.828 145 109 0 180 324 56 200 1.06e-13 70.5
MS.gene065166.t1 MTR_1g075540 29.268 164 110 5 177 337 9 169 2.18e-13 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene065166.t1 AT1G52870 65.014 363 108 6 2 359 4 352 2.66e-167 472
MS.gene065166.t1 AT4G03410 74.089 247 63 1 121 367 72 317 2.01e-142 407
MS.gene065166.t1 AT4G03410 75.949 237 57 0 121 357 72 308 2.20e-142 408
MS.gene065166.t1 AT1G52870 60.312 320 104 7 2 316 4 305 3.02e-131 378
MS.gene065166.t1 AT5G43140 24.713 174 130 1 180 353 82 254 5.86e-14 71.6
MS.gene065166.t1 AT4G33905 26.111 180 128 2 180 359 86 260 8.07e-14 71.2
MS.gene065166.t1 AT2G14860 26.901 171 124 1 180 350 77 246 2.65e-13 69.7

Find 75 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGATATGATAGAGCTTATT+TGG 0.132143 2.4:+17689937 MS.gene065166:CDS
TTACTATTGATAGTGATTAT+TGG 0.193346 2.4:+17688237 MS.gene065166:CDS
GCTAGTATTGTTCTTGTTGC+TGG 0.288636 2.4:+17688191 MS.gene065166:CDS
CAGTTGAGCAAAGACTTCTT+TGG 0.344032 2.4:+17689913 MS.gene065166:CDS
CTTGTTGGATTTGCTCTACA+TGG 0.353651 2.4:+17689401 MS.gene065166:CDS
AATTCATTGAAAATATTGAT+TGG 0.360409 2.4:-17689679 None:intergenic
ATAAACTTACGTTGAAAGTA+TGG 0.377879 2.4:-17689964 None:intergenic
ACGACGCAAGTGAATGGATT+TGG 0.380452 2.4:+17688053 MS.gene065166:CDS
AAACTGCATGGTCGGCAGTT+TGG 0.384594 2.4:+17689611 MS.gene065166:CDS
ACACAACTGGTTAGCTTATG+AGG 0.392465 2.4:+17689138 MS.gene065166:CDS
TGATCGAAGGCAACTTTGAC+TGG 0.394081 2.4:-17689589 None:intergenic
CAAAGAAGTCTTTGCTCAAC+TGG 0.399250 2.4:-17689912 None:intergenic
TTGTTTATTCTGTAGGAGAC+TGG 0.418497 2.4:+17689209 MS.gene065166:CDS
AGATATGATAGAGCTTATTT+GGG 0.418869 2.4:+17689938 MS.gene065166:CDS
TATGGTCTACCTCACAAAAC+TGG 0.429644 2.4:-17689445 None:intergenic
TCACTATCAAACCTTCTTGC+TGG 0.438486 2.4:-17687986 None:intergenic
AGTTGAGCAAAGACTTCTTT+GGG 0.441026 2.4:+17689914 MS.gene065166:CDS
CGTGCACGGATGTTCAGATC+AGG 0.450132 2.4:+17689377 MS.gene065166:CDS
TTGCCAAGATGGTGATTAGC+GGG 0.450889 2.4:+17689185 MS.gene065166:CDS
TTTGCTCATCTAATAACTTA+CGG 0.455935 2.4:+17689882 MS.gene065166:CDS
TTAGTGGAGAATCTTGATAC+TGG 0.460029 2.4:-17687873 None:intergenic
AGCATTTACTATACAGTTGT+GGG 0.481625 2.4:+17689637 MS.gene065166:CDS
TGAAGAGAATGTGGAGAGTG+TGG 0.488302 2.4:+17688142 MS.gene065166:CDS
GATATGCACCTCTACACAAC+TGG 0.490397 2.4:+17689125 MS.gene065166:CDS
AATGGATTTGGAGCGAATGA+AGG 0.492577 2.4:+17688065 MS.gene065166:CDS
TCGAGTGCTTCGGGTTTGGT+TGG 0.494003 2.4:+17688110 MS.gene065166:CDS
GTGACGACGACGCAAGTGAA+TGG 0.496360 2.4:+17688047 MS.gene065166:CDS
TAAGTTATTAGATGAGCAAA+TGG 0.497633 2.4:-17689879 None:intergenic
ACTACCCACCATCCTTTGTA+AGG 0.501278 2.4:-17689565 None:intergenic
AGCTATTTCCTTACAAAGGA+TGG 0.507459 2.4:+17689557 MS.gene065166:CDS
TGATTATTGCAGTGCTTCGA+AGG 0.509560 2.4:+17689332 MS.gene065166:intron
ATGTTCAGATCAGGGCTTGT+TGG 0.511574 2.4:+17689386 MS.gene065166:CDS
AACCCCGCTAATCACCATCT+TGG 0.520776 2.4:-17689188 None:intergenic
GAAGGTTTGTTATCGTTGGA+AGG 0.524445 2.4:+17688083 MS.gene065166:CDS
AGCGGGGTTGTTTATTCTGT+AGG 0.524576 2.4:+17689202 MS.gene065166:CDS
CAGCATTTACTATACAGTTG+TGG 0.531133 2.4:+17689636 MS.gene065166:CDS
GATAGTGAGCCGTGTGGAGA+TGG 0.547654 2.4:+17688001 MS.gene065166:CDS
GGAAGCTCTCAAGACAAATC+CGG 0.548802 2.4:+17689159 MS.gene065166:CDS
CTTCGATCAAACTGCATGGT+CGG 0.558882 2.4:+17689603 MS.gene065166:CDS
GAGGAAAGTGTGGTGAGGTA+CGG 0.563573 2.4:-17687799 None:intergenic
GAATGAAGGTTTGTTATCGT+TGG 0.563825 2.4:+17688079 MS.gene065166:CDS
GCCACATACCTCAGATGTAG+TGG 0.573931 2.4:-17690670 None:intergenic
TACAGGCAGGATGGAAGTTG+TGG 0.575586 2.4:+17689856 MS.gene065166:intron
CAGGAGCTATTTCCTTACAA+AGG 0.576904 2.4:+17689553 MS.gene065166:intron
TATTTCCTTACAAAGGATGG+TGG 0.578819 2.4:+17689560 MS.gene065166:CDS
AGGTTCTCTTACAGTCAACA+TGG 0.583530 2.4:-17689719 None:intergenic
GATATTACAGACCAGCAAGA+AGG 0.585948 2.4:+17687975 MS.gene065166:CDS
TTGGTGTGGAAATTGAAGGG+AGG 0.587765 2.4:-17687818 None:intergenic
TTTGCCAAGATGGTGATTAG+CGG 0.591010 2.4:+17689184 MS.gene065166:CDS
ACTTTCTTATACAGGCAGGA+TGG 0.595260 2.4:+17689847 MS.gene065166:intron
CGACCATGCAGTTTGATCGA+AGG 0.598693 2.4:-17689602 None:intergenic
TAATGAGAATGAAGAGAATG+TGG 0.602012 2.4:+17688133 MS.gene065166:CDS
TGTAGGAGACTGGATTGCAC+AGG 0.610678 2.4:+17689219 MS.gene065166:CDS
ATTTCCTTACAAAGGATGGT+GGG 0.611721 2.4:+17689561 MS.gene065166:CDS
AGGTGGAGATGGTGAATTAG+CGG 0.614566 2.4:+17688025 MS.gene065166:CDS
GTGGAGATGGAAGGTGGAGA+TGG 0.619496 2.4:+17688014 MS.gene065166:CDS
GTGAGGTACGGTGCTGTGAA+CGG 0.621994 2.4:-17687787 None:intergenic
TAAGCTAACCAGTTGTGTAG+AGG 0.623564 2.4:-17689133 None:intergenic
AGCGAAATCCACTACATCTG+AGG 0.636729 2.4:+17690662 MS.gene065166:CDS
AGCCGTGTGGAGATGGAAGG+TGG 0.639866 2.4:+17688008 MS.gene065166:CDS
GGTTCTCTTACAGTCAACAT+GGG 0.640571 2.4:-17689718 None:intergenic
GTGCACGGATGTTCAGATCA+GGG 0.649536 2.4:+17689378 MS.gene065166:CDS
TTGCCTTCGATCAAACTGCA+TGG 0.649875 2.4:+17689599 MS.gene065166:CDS
CTCCACCTTCCATCTCCACA+CGG 0.651428 2.4:-17688010 None:intergenic
AAATTGAAGGGAGGAAAGTG+TGG 0.659597 2.4:-17687809 None:intergenic
GAATTTCACAAAACGTGCAG+CGG 0.660249 2.4:+17687899 MS.gene065166:CDS
GTGAGCCGTGTGGAGATGGA+AGG 0.660357 2.4:+17688005 MS.gene065166:CDS
GAAGGGAGGAAAGTGTGGTG+AGG 0.665797 2.4:-17687804 None:intergenic
TGCCAAGATGGTGATTAGCG+GGG 0.667655 2.4:+17689186 MS.gene065166:CDS
GCATTTACTATACAGTTGTG+GGG 0.671450 2.4:+17689638 MS.gene065166:CDS
TGATTGGAGAATCAAAACGC+AGG 0.680696 2.4:-17689663 None:intergenic
GGTAGCGACGAAAGTATCAA+CGG 0.696411 2.4:+17687920 MS.gene065166:CDS
GTTCTCTTACAGTCAACATG+GGG 0.723534 2.4:-17689717 None:intergenic
AGGTTTGATAGTGAGCCGTG+TGG 0.739464 2.4:+17687995 MS.gene065166:CDS
AGCGACGAAAGTATCAACGG+AGG 0.758121 2.4:+17687923 MS.gene065166:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAAAACATAAAGTAA+AGG - chr2.4:17688466-17688485 None:intergenic 10.0%
!! AATTCATTGAAAATATTGAT+TGG - chr2.4:17689682-17689701 None:intergenic 15.0%
!!! GTTAAAAAGCATTTATATTA+TGG + chr2.4:17690730-17690749 MS.gene065166:intron 15.0%
!! ATGATAAACACTTATCTATA+TGG + chr2.4:17690110-17690129 MS.gene065166:intron 20.0%
!! GATTTGGAAATGATTAAATT+TGG + chr2.4:17688333-17688352 MS.gene065166:intron 20.0%
!!! AATCTTTTCATATATTTACC+AGG + chr2.4:17690777-17690796 MS.gene065166:intron 20.0%
!!! AATTTGCAATTTTATAGACT+AGG + chr2.4:17688381-17688400 MS.gene065166:intron 20.0%
!!! CAACTTTAAATTAGCTTATA+AGG - chr2.4:17688936-17688955 None:intergenic 20.0%
!!! CAATATTTTCAATGAATTGA+AGG + chr2.4:17689684-17689703 MS.gene065166:CDS 20.0%
!!! CTTATAAGCTAATTTAAAGT+TGG + chr2.4:17688934-17688953 MS.gene065166:intron 20.0%
!!! TTACTATTGATAGTGATTAT+TGG + chr2.4:17688237-17688256 MS.gene065166:CDS 20.0%
! AACACTTAATCAATTAGTGT+AGG - chr2.4:17690087-17690106 None:intergenic 25.0%
! AGATATGATAGAGCTTATTT+GGG + chr2.4:17689938-17689957 MS.gene065166:CDS 25.0%
! ATAAACTTACGTTGAAAGTA+TGG - chr2.4:17689967-17689986 None:intergenic 25.0%
! CGTATGGAAAAATATTTGTT+TGG + chr2.4:17688795-17688814 MS.gene065166:intron 25.0%
! GTAAACTTCTCATCAAAATT+AGG + chr2.4:17688706-17688725 MS.gene065166:intron 25.0%
! TAAGTTATTAGATGAGCAAA+TGG - chr2.4:17689882-17689901 None:intergenic 25.0%
! TAGATATGATAGAGCTTATT+TGG + chr2.4:17689937-17689956 MS.gene065166:CDS 25.0%
! TCAAGATAATCAAATTTGAC+TGG - chr2.4:17689035-17689054 None:intergenic 25.0%
! TTCCTTAAACTTTCTTATAC+AGG + chr2.4:17689839-17689858 MS.gene065166:intron 25.0%
! TTTGCTCATCTAATAACTTA+CGG + chr2.4:17689882-17689901 MS.gene065166:CDS 25.0%
!! AAATATTTTTCCATACGCAT+TGG - chr2.4:17688792-17688811 None:intergenic 25.0%
!! ATTACCATTTATTTGTTGCA+TGG + chr2.4:17689749-17689768 MS.gene065166:intron 25.0%
!! CACGTTTAAATTAGCTTATT+TGG - chr2.4:17688979-17688998 None:intergenic 25.0%
!!! TTGGAAATGGATTTTGATTT+TGG - chr2.4:17687840-17687859 None:intergenic 25.0%
AAAAACTAAGCCAATCCAAA+CGG + chr2.4:17688637-17688656 MS.gene065166:intron 30.0%
AAAATAAGTCAATCCAAACC+CGG - chr2.4:17688407-17688426 None:intergenic 30.0%
AATAAATGGTAATAGCCAGA+AGG - chr2.4:17689742-17689761 None:intergenic 30.0%
ACTATACAATTTCTCCTAGA+TGG - chr2.4:17690022-17690041 None:intergenic 30.0%
ACTTTCAACGTAAGTTTATC+TGG + chr2.4:17689968-17689987 MS.gene065166:intron 30.0%
AGCATTTACTATACAGTTGT+GGG + chr2.4:17689637-17689656 MS.gene065166:CDS 30.0%
ATGGAGATATGCTAATTAAG+TGG + chr2.4:17689517-17689536 MS.gene065166:intron 30.0%
ATTCAAGAACAATGCAAGAA+AGG - chr2.4:17689487-17689506 None:intergenic 30.0%
CAAATTTGACTGGATATACA+GGG - chr2.4:17689025-17689044 None:intergenic 30.0%
GATTAAATTTGGTTGTACTG+TGG + chr2.4:17688344-17688363 MS.gene065166:intron 30.0%
GGAAAAGAACATTGTTCATA+TGG - chr2.4:17689466-17689485 None:intergenic 30.0%
GTTTCCATGCAACAAATAAA+TGG - chr2.4:17689756-17689775 None:intergenic 30.0%
TAATGAGAATGAAGAGAATG+TGG + chr2.4:17688133-17688152 MS.gene065166:CDS 30.0%
TATTATTCATAAGCTTGTCG+AGG - chr2.4:17688575-17688594 None:intergenic 30.0%
TCAAATTTGACTGGATATAC+AGG - chr2.4:17689026-17689045 None:intergenic 30.0%
TCATACTCAAAGATAGAATG+TGG + chr2.4:17690138-17690157 MS.gene065166:intron 30.0%
TGCCTGTATAAGAAAGTTTA+AGG - chr2.4:17689844-17689863 None:intergenic 30.0%
TTAAACTTTCTTATACAGGC+AGG + chr2.4:17689843-17689862 MS.gene065166:intron 30.0%
TTCTTGAATTGTCTGACTTA+TGG + chr2.4:17689498-17689517 MS.gene065166:intron 30.0%
! AAAGGAGCATACAGTTTATT+TGG - chr2.4:17690549-17690568 None:intergenic 30.0%
! ACTTGTGTTTTGTGATTGTT+TGG - chr2.4:17690278-17690297 None:intergenic 30.0%
! CAATGGATATTTGCTAAGTT+TGG + chr2.4:17690708-17690727 MS.gene065166:intron 30.0%
! TGAATTTTTCCTTATCTGCT+AGG + chr2.4:17689052-17689071 MS.gene065166:intron 30.0%
!! ATTTTGGTGTGGAAATTGAA+GGG - chr2.4:17687824-17687843 None:intergenic 30.0%
!! TTACTATTACCAGTTTTGTG+AGG + chr2.4:17689436-17689455 MS.gene065166:CDS 30.0%
!! TTTTGTGAAATTCGGATTAG+TGG - chr2.4:17687892-17687911 None:intergenic 30.0%
!!! AATGGATTTTGATTTTGGTG+TGG - chr2.4:17687835-17687854 None:intergenic 30.0%
!!! CGAAGAACTATACTTTTTCT+TGG - chr2.4:17688898-17688917 None:intergenic 30.0%
AACACAAATCCTAGCAGATA+AGG - chr2.4:17689064-17689083 None:intergenic 35.0%
AATCACTATACCGTTTGGAT+TGG - chr2.4:17688650-17688669 None:intergenic 35.0%
AGCACTTGATCAATTAGTGT+AGG - chr2.4:17690321-17690340 None:intergenic 35.0%
AGTCTATACATTTGCATGCA+GGG + chr2.4:17688863-17688882 MS.gene065166:intron 35.0%
AGTTGAGCAAAGACTTCTTT+GGG + chr2.4:17689914-17689933 MS.gene065166:CDS 35.0%
ATGTGTGAAAATGCACAGTA+TGG + chr2.4:17690055-17690074 MS.gene065166:intron 35.0%
ATTTCCTTACAAAGGATGGT+GGG + chr2.4:17689561-17689580 MS.gene065166:CDS 35.0%
CAGCATTTACTATACAGTTG+TGG + chr2.4:17689636-17689655 MS.gene065166:CDS 35.0%
GCATTTACTATACAGTTGTG+GGG + chr2.4:17689638-17689657 MS.gene065166:CDS 35.0%
GGCTAATCTAAATTAGCAAC+TGG - chr2.4:17689004-17689023 None:intergenic 35.0%
TAGTCTATACATTTGCATGC+AGG + chr2.4:17688862-17688881 MS.gene065166:intron 35.0%
TATTTCCTTACAAAGGATGG+TGG + chr2.4:17689560-17689579 MS.gene065166:CDS 35.0%
TCCAAACGGTATAGTGATTA+TGG + chr2.4:17688651-17688670 MS.gene065166:intron 35.0%
TGTGTGTGATTCTTTGGATT+TGG + chr2.4:17688317-17688336 MS.gene065166:intron 35.0%
TTAGGTCATAGTTACCAACT+TGG + chr2.4:17688724-17688743 MS.gene065166:intron 35.0%
TTAGTGGAGAATCTTGATAC+TGG - chr2.4:17687876-17687895 None:intergenic 35.0%
TTGTTTATTCTGTAGGAGAC+TGG + chr2.4:17689209-17689228 MS.gene065166:CDS 35.0%
TTTCATATACAGCTGAGTCT+CGG + chr2.4:17689261-17689280 MS.gene065166:intron 35.0%
! AGCTATTTCCTTACAAAGGA+TGG + chr2.4:17689557-17689576 MS.gene065166:CDS 35.0%
! CAATCTTTTATCATGCACTG+TGG + chr2.4:17689297-17689316 MS.gene065166:intron 35.0%
! CTGCATAGAATTTTCCATCT+AGG + chr2.4:17690005-17690024 MS.gene065166:intron 35.0%
! CTTGATACTGGAAAGTTTTG+TGG - chr2.4:17687864-17687883 None:intergenic 35.0%
! TGCAATTTTATAGACTAGGC+CGG + chr2.4:17688385-17688404 MS.gene065166:intron 35.0%
!! AAAGTTTTGTGGCTTGGAAA+TGG - chr2.4:17687853-17687872 None:intergenic 35.0%
!! GAATGAAGGTTTGTTATCGT+TGG + chr2.4:17688079-17688098 MS.gene065166:CDS 35.0%
!! GATTTTGGTGTGGAAATTGA+AGG - chr2.4:17687825-17687844 None:intergenic 35.0%
!!! GTTTTTAGCGTATGCAAAAC+TGG - chr2.4:17688623-17688642 None:intergenic 35.0%
!!! TTTTTGAGTTTGATCGTGCA+CGG + chr2.4:17689363-17689382 MS.gene065166:CDS 35.0%
AAATTGAAGGGAGGAAAGTG+TGG - chr2.4:17687812-17687831 None:intergenic 40.0%
AAGCTTGTCGAGGTAGTTTA+TGG - chr2.4:17688565-17688584 None:intergenic 40.0%
ACCACTGCAGAGATATACAA+AGG - chr2.4:17690567-17690586 None:intergenic 40.0%
ACTTGTGTCGTGTAACTGTT+TGG - chr2.4:17690512-17690531 None:intergenic 40.0%
ACTTTCTTATACAGGCAGGA+TGG + chr2.4:17689847-17689866 MS.gene065166:intron 40.0%
AGGTTCTCTTACAGTCAACA+TGG - chr2.4:17689722-17689741 None:intergenic 40.0%
ATAGCTCCTGGATAAATGAG+AGG - chr2.4:17689543-17689562 None:intergenic 40.0%
ATCACCATCTTGGCAAAAAC+CGG - chr2.4:17689181-17689200 None:intergenic 40.0%
CAAAGAAGTCTTTGCTCAAC+TGG - chr2.4:17689915-17689934 None:intergenic 40.0%
CAAGATAATGTTACCACCAC+TGG - chr2.4:17689799-17689818 None:intergenic 40.0%
CAGTTGAGCAAAGACTTCTT+TGG + chr2.4:17689913-17689932 MS.gene065166:CDS 40.0%
CTGCTAGGATTTGTGTTTCT+TGG + chr2.4:17689067-17689086 MS.gene065166:intron 40.0%
CTTTGTAAGGAAATAGCTCC+TGG - chr2.4:17689555-17689574 None:intergenic 40.0%
GAATTTCACAAAACGTGCAG+CGG + chr2.4:17687899-17687918 MS.gene065166:CDS 40.0%
GATATTACAGACCAGCAAGA+AGG + chr2.4:17687975-17687994 MS.gene065166:CDS 40.0%
GCACGATCAAACTCAAAAAG+AGG - chr2.4:17689362-17689381 None:intergenic 40.0%
GCCATAATCACTATACCGTT+TGG - chr2.4:17688655-17688674 None:intergenic 40.0%
GCTAGAAATCGACACAAACT+TGG - chr2.4:17688677-17688696 None:intergenic 40.0%
GCTAGTATTGTTCTTGTTGC+TGG + chr2.4:17688191-17688210 MS.gene065166:CDS 40.0%
GGTTCTCTTACAGTCAACAT+GGG - chr2.4:17689721-17689740 None:intergenic 40.0%
GTTCTCTTACAGTCAACATG+GGG - chr2.4:17689720-17689739 None:intergenic 40.0%
TAAGCTAACCAGTTGTGTAG+AGG - chr2.4:17689136-17689155 None:intergenic 40.0%
TATACATTTGCATGCAGGGA+GGG + chr2.4:17688867-17688886 MS.gene065166:intron 40.0%
TATGGTCTACCTCACAAAAC+TGG - chr2.4:17689448-17689467 None:intergenic 40.0%
TCACTATCAAACCTTCTTGC+TGG - chr2.4:17687989-17688008 None:intergenic 40.0%
TCCTTTGTATATCTCTGCAG+TGG + chr2.4:17690563-17690582 MS.gene065166:intron 40.0%
TGATTATTGCAGTGCTTCGA+AGG + chr2.4:17689332-17689351 MS.gene065166:intron 40.0%
TGATTGGAGAATCAAAACGC+AGG - chr2.4:17689666-17689685 None:intergenic 40.0%
TGTGTGTGTGTGTGATTCTT+TGG + chr2.4:17688311-17688330 MS.gene065166:intron 40.0%
TTGACTGTAAGAGAACCTTC+TGG + chr2.4:17689724-17689743 MS.gene065166:intron 40.0%
TTTGCCAAGATGGTGATTAG+CGG + chr2.4:17689184-17689203 MS.gene065166:CDS 40.0%
! AAATCCGGTTTTTGCCAAGA+TGG + chr2.4:17689174-17689193 MS.gene065166:CDS 40.0%
! AATGGATTTGGAGCGAATGA+AGG + chr2.4:17688065-17688084 MS.gene065166:CDS 40.0%
! CAGGAGCTATTTCCTTACAA+AGG + chr2.4:17689553-17689572 MS.gene065166:intron 40.0%
! CTTGTTGGATTTGCTCTACA+TGG + chr2.4:17689401-17689420 MS.gene065166:CDS 40.0%
! GCAATTTTATAGACTAGGCC+GGG + chr2.4:17688386-17688405 MS.gene065166:intron 40.0%
! GCTGCACGTTTTGTGAAATT+CGG - chr2.4:17687900-17687919 None:intergenic 40.0%
!! ACACAACTGGTTAGCTTATG+AGG + chr2.4:17689138-17689157 MS.gene065166:CDS 40.0%
!! ATTCTTTTTCTGAGAGCCAG+TGG + chr2.4:17689780-17689799 MS.gene065166:intron 40.0%
!! GAAGGTTTGTTATCGTTGGA+AGG + chr2.4:17688083-17688102 MS.gene065166:CDS 40.0%
!! GTGTTTCTTGGTGCTATGTA+GGG + chr2.4:17689079-17689098 MS.gene065166:intron 40.0%
!! GTTTGTGTCGATTTCTAGCT+TGG + chr2.4:17688678-17688697 MS.gene065166:intron 40.0%
!! TACTGGAAAGTTTTGTGGCT+TGG - chr2.4:17687859-17687878 None:intergenic 40.0%
!! TGTGTTTCTTGGTGCTATGT+AGG + chr2.4:17689078-17689097 MS.gene065166:intron 40.0%
!! TTCGAAGCACTGCAATAATC+AGG - chr2.4:17689333-17689352 None:intergenic 40.0%
!!! GCTTCTGGTTTTGTGATCAA+TGG + chr2.4:17690691-17690710 MS.gene065166:intron 40.0%
AAGTGGCCTCTCATTTATCC+AGG + chr2.4:17689534-17689553 MS.gene065166:intron 45.0%
ACTACCCACCATCCTTTGTA+AGG - chr2.4:17689568-17689587 None:intergenic 45.0%
AGCGAAATCCACTACATCTG+AGG + chr2.4:17690662-17690681 MS.gene065166:CDS 45.0%
AGCGGGGTTGTTTATTCTGT+AGG + chr2.4:17689202-17689221 MS.gene065166:CDS 45.0%
AGGTGGAGATGGTGAATTAG+CGG + chr2.4:17688025-17688044 MS.gene065166:CDS 45.0%
ATGTTCAGATCAGGGCTTGT+TGG + chr2.4:17689386-17689405 MS.gene065166:CDS 45.0%
CTATACATTTGCATGCAGGG+AGG + chr2.4:17688866-17688885 MS.gene065166:intron 45.0%
CTTCGATCAAACTGCATGGT+CGG + chr2.4:17689603-17689622 MS.gene065166:CDS 45.0%
GATATGCACCTCTACACAAC+TGG + chr2.4:17689125-17689144 MS.gene065166:CDS 45.0%
GGAAGCTCTCAAGACAAATC+CGG + chr2.4:17689159-17689178 MS.gene065166:CDS 45.0%
TGAAGAGAATGTGGAGAGTG+TGG + chr2.4:17688142-17688161 MS.gene065166:CDS 45.0%
TGATCGAAGGCAACTTTGAC+TGG - chr2.4:17689592-17689611 None:intergenic 45.0%
TTGCCAAGATGGTGATTAGC+GGG + chr2.4:17689185-17689204 MS.gene065166:CDS 45.0%
TTGCCTTCGATCAAACTGCA+TGG + chr2.4:17689599-17689618 MS.gene065166:CDS 45.0%
TTGGTGTGGAAATTGAAGGG+AGG - chr2.4:17687821-17687840 None:intergenic 45.0%
TTTATAGACTAGGCCGGGTT+TGG + chr2.4:17688391-17688410 MS.gene065166:intron 45.0%
! ACGACGCAAGTGAATGGATT+TGG + chr2.4:17688053-17688072 MS.gene065166:CDS 45.0%
! TCCACTACATCTGAGGTATG+TGG + chr2.4:17690669-17690688 MS.gene065166:intron 45.0%
! TTTCCATACGCATTGGCCAA+GGG - chr2.4:17688785-17688804 None:intergenic 45.0%
!! ACTTGAGTTGATCGATCCCT+TGG + chr2.4:17688766-17688785 MS.gene065166:intron 45.0%
!! GGTAGCGACGAAAGTATCAA+CGG + chr2.4:17687920-17687939 MS.gene065166:CDS 45.0%
!! TCTCTGCAGTGGTTCTAACA+TGG + chr2.4:17690574-17690593 MS.gene065166:intron 45.0%
!! TTCTTGGTGCTATGTAGGGA+TGG + chr2.4:17689083-17689102 MS.gene065166:intron 45.0%
!! TTTTCCATACGCATTGGCCA+AGG - chr2.4:17688786-17688805 None:intergenic 45.0%
!!! GAAGGTTTTTCGAGTGCTTC+GGG + chr2.4:17688101-17688120 MS.gene065166:CDS 45.0%
!!! GGAAGGTTTTTCGAGTGCTT+CGG + chr2.4:17688100-17688119 MS.gene065166:CDS 45.0%
!!! TTTTTCGAGTGCTTCGGGTT+TGG + chr2.4:17688106-17688125 MS.gene065166:CDS 45.0%
!! TTAAAAAAAAAAAAAAAAAC+AGG - chr2.4:17690758-17690777 None:intergenic 5.0%
AAACTGCATGGTCGGCAGTT+TGG + chr2.4:17689611-17689630 MS.gene065166:CDS 50.0%
AACCCCGCTAATCACCATCT+TGG - chr2.4:17689191-17689210 None:intergenic 50.0%
CGACCATGCAGTTTGATCGA+AGG - chr2.4:17689605-17689624 None:intergenic 50.0%
GCCACATACCTCAGATGTAG+TGG - chr2.4:17690673-17690692 None:intergenic 50.0%
GTGCACGGATGTTCAGATCA+GGG + chr2.4:17689378-17689397 MS.gene065166:CDS 50.0%
TACAGGCAGGATGGAAGTTG+TGG + chr2.4:17689856-17689875 MS.gene065166:intron 50.0%
TGCCAAGATGGTGATTAGCG+GGG + chr2.4:17689186-17689205 MS.gene065166:CDS 50.0%
TGTAGGAGACTGGATTGCAC+AGG + chr2.4:17689219-17689238 MS.gene065166:CDS 50.0%
! CATCTGAGGTATGTGGCTTC+TGG + chr2.4:17690676-17690695 MS.gene065166:intron 50.0%
! GAGGAAAGTGTGGTGAGGTA+CGG - chr2.4:17687802-17687821 None:intergenic 50.0%
!! AGCGACGAAAGTATCAACGG+AGG + chr2.4:17687923-17687942 MS.gene065166:CDS 50.0%
!! AGGTTTGATAGTGAGCCGTG+TGG + chr2.4:17687995-17688014 MS.gene065166:CDS 50.0%
!! CTTTTTCTGAGAGCCAGTGG+TGG + chr2.4:17689783-17689802 MS.gene065166:intron 50.0%
CGTGCACGGATGTTCAGATC+AGG + chr2.4:17689377-17689396 MS.gene065166:CDS 55.0%
CTCCACCTTCCATCTCCACA+CGG - chr2.4:17688013-17688032 None:intergenic 55.0%
GATAGTGAGCCGTGTGGAGA+TGG + chr2.4:17688001-17688020 MS.gene065166:CDS 55.0%
GATCCCTTGGCCAATGCGTA+TGG + chr2.4:17688779-17688798 MS.gene065166:intron 55.0%
GTGACGACGACGCAAGTGAA+TGG + chr2.4:17688047-17688066 MS.gene065166:CDS 55.0%
GTGGAGATGGAAGGTGGAGA+TGG + chr2.4:17688014-17688033 MS.gene065166:CDS 55.0%
! GAAGGGAGGAAAGTGTGGTG+AGG - chr2.4:17687807-17687826 None:intergenic 55.0%
! TCGAGTGCTTCGGGTTTGGT+TGG + chr2.4:17688110-17688129 MS.gene065166:CDS 55.0%
!! GTGAGGTACGGTGCTGTGAA+CGG - chr2.4:17687790-17687809 None:intergenic 55.0%
AGCCGTGTGGAGATGGAAGG+TGG + chr2.4:17688008-17688027 MS.gene065166:CDS 60.0%
CCACTCGCGTCACACCAAGT+TGG - chr2.4:17688741-17688760 None:intergenic 60.0%
GTGAGCCGTGTGGAGATGGA+AGG + chr2.4:17688005-17688024 MS.gene065166:CDS 60.0%
!! CCAACTTGGTGTGACGCGAG+TGG + chr2.4:17688738-17688757 MS.gene065166:intron 60.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 17687780 17690804 17687780 ID=MS.gene065166
chr2.4 mRNA 17687780 17690804 17687780 ID=MS.gene065166.t1;Parent=MS.gene065166
chr2.4 exon 17687780 17688262 17687780 ID=MS.gene065166.t1.exon1;Parent=MS.gene065166.t1
chr2.4 CDS 17687780 17688262 17687780 ID=cds.MS.gene065166.t1;Parent=MS.gene065166.t1
chr2.4 exon 17689100 17689240 17689100 ID=MS.gene065166.t1.exon2;Parent=MS.gene065166.t1
chr2.4 CDS 17689100 17689240 17689100 ID=cds.MS.gene065166.t1;Parent=MS.gene065166.t1
chr2.4 exon 17689344 17689457 17689344 ID=MS.gene065166.t1.exon3;Parent=MS.gene065166.t1
chr2.4 CDS 17689344 17689457 17689344 ID=cds.MS.gene065166.t1;Parent=MS.gene065166.t1
chr2.4 exon 17689556 17689729 17689556 ID=MS.gene065166.t1.exon4;Parent=MS.gene065166.t1
chr2.4 CDS 17689556 17689729 17689556 ID=cds.MS.gene065166.t1;Parent=MS.gene065166.t1
chr2.4 exon 17689861 17689976 17689861 ID=MS.gene065166.t1.exon5;Parent=MS.gene065166.t1
chr2.4 CDS 17689861 17689976 17689861 ID=cds.MS.gene065166.t1;Parent=MS.gene065166.t1
chr2.4 exon 17690614 17690683 17690614 ID=MS.gene065166.t1.exon6;Parent=MS.gene065166.t1
chr2.4 CDS 17690614 17690683 17690614 ID=cds.MS.gene065166.t1;Parent=MS.gene065166.t1
chr2.4 exon 17690799 17690804 17690799 ID=MS.gene065166.t1.exon7;Parent=MS.gene065166.t1
chr2.4 CDS 17690799 17690804 17690799 ID=cds.MS.gene065166.t1;Parent=MS.gene065166.t1
Gene Sequence

>MS.gene065166

ATGGCTTCCGTTCACAGCACCGTACCTCACCACACTTTCCTCCCTTCAATTTCCACACCAAAATCAAAATCCATTTCCAAGCCACAAAACTTTCCAGTATCAAGATTCTCCACTAATCCGAATTTCACAAAACGTGCAGCGGTAGCGACGAAAGTATCAACGGAGGAGTTCGACGTAATAGCAGTACAGAGCAACGATATTACAGACCAGCAAGAAGGTTTGATAGTGAGCCGTGTGGAGATGGAAGGTGGAGATGGTGAATTAGCGGTGACGACGACGCAAGTGAATGGATTTGGAGCGAATGAAGGTTTGTTATCGTTGGAAGGTTTTTCGAGTGCTTCGGGTTTGGTTGGTAATGAGAATGAAGAGAATGTGGAGAGTGTGGAGAAGCTTCTAGATAGAAGTATTAATGCTAGTATTGTTCTTGTTGCTGGTACTTTTGCTCTTACGAAGCTTCTTACTATTGATAGTGATTATTGGCATGTAAGTTTACAACAACAACTCAATCATGCTTATCTGAAATTATGTATGTGTGTGTGTGTGTGATTCTTTGGATTTGGAAATGATTAAATTTGGTTGTACTGTGGAAATTTTGATACAAAATTTGCAATTTTATAGACTAGGCCGGGTTTGGATTGACTTATTTTTCAGCTTATGAAACATAGTTTATGCAAATAAATAATCCTTTACTTTATGTTTTTATTTTATTTTATGACAGCATAATTTTTTATGTTAATTCTTAAGTTCATGCTAATGAAAATTGTATTTTATAAGCTGTTTTTCCATAAACTACCTCGACAAGCTTATGAATAATACATAAAAGCTTATTTATTTGCATAACCAGTTTTGCATACGCTAAAAACTAAGCCAATCCAAACGGTATAGTGATTATGGCCAAGTTTGTGTCGATTTCTAGCTTGGATCAAGTAAACTTCTCATCAAAATTAGGTCATAGTTACCAACTTGGTGTGACGCGAGTGGTAGATACTTGAGTTGATCGATCCCTTGGCCAATGCGTATGGAAAAATATTTGTTTGGAGAGAGACTGATCTCTTTAATGAATCTTAGTTGTCTAGAAGAATTAGTCTATACATTTGCATGCAGGGAGGGTTTTACCAAGAAAAAGTATAGTTCTTCGTCTTGTAGAAAGAGTCCTTATAAGCTAATTTAAAGTTGGTCTAAGTTATGTGTTTATTCCAAATAAGCTAATTTAAACGTGCTCCAGTTGCTAATTTAGATTAGCCCTGTATATCCAGTCAAATTTGATTATCTTGAATTTTTCCTTATCTGCTAGGATTTGTGTTTCTTGGTGCTATGTAGGGATGGACAATCTATGAGATAGTAAGATATGCACCTCTACACAACTGGTTAGCTTATGAGGAAGCTCTCAAGACAAATCCGGTTTTTGCCAAGATGGTGATTAGCGGGGTTGTTTATTCTGTAGGAGACTGGATTGCACAGGTGAGTTTTTGTGTATTTCATTTCATATACAGCTGAGTCTCGGTTAGTTGAATAGACAATCTTTTATCATGCACTGTGGCTTAAGCTCTCCTGATTATTGCAGTGCTTCGAAGGAAAGCCTCTTTTTGAGTTTGATCGTGCACGGATGTTCAGATCAGGGCTTGTTGGATTTGCTCTACATGGCTCTCTTTCTCATTACTATTACCAGTTTTGTGAGGTAGACCATATGAACAATGTTCTTTTCCTTTCTTGCATTGTTCTTGAATTGTCTGACTTATGGAGATATGCTAATTAAGTGGCCTCTCATTTATCCAGGAGCTATTTCCTTACAAAGGATGGTGGGTAGTTCCAGTCAAAGTTGCCTTCGATCAAACTGCATGGTCGGCAGTTTGGAACAGCATTTACTATACAGTTGTGGGGATCCTGCGTTTTGATTCTCCAATCAATATTTTCAATGAATTGAAGGCAACATTTTTCCCCATGTTGACTGTAAGAGAACCTTCTGGCTATTACCATTTATTTGTTGCATGGAAACAGTTATTCTTTTTCTGAGAGCCAGTGGTGGTAACATTATCTTGCAACTTCTTGTTATTTATGTTTCCTTAAACTTTCTTATACAGGCAGGATGGAAGTTGTGGCCATTTGCTCATCTAATAACTTACGGTGTAATACCAGTTGAGCAAAGACTTCTTTGGGTAGATATGATAGAGCTTATTTGGGTGACCATACTTTCAACGTAAGTTTATCTGGATTATTTTGAATTGCTGCATAGAATTTTCCATCTAGGAGAAATTGTATAGTTAAATGCAAGTGAATGTGTGAAAATGCACAGTATGGCTCTAACCTACACTAATTGATTAAGTGTTTACATGATAAACACTTATCTATATGGTATTTTCATACTCAAAGATAGAATGTGGTTAAGTTGTTTTTATGTGTACACTAAGTTGTTTTCATAAGCTATCATGTGTAGTCTATTGAAATAAGTTGATAACAGATTACGAACATACTATAAGCTATTTTTGTAAACTTTACCAAACAATCACAAAACACAAGTGTTTATGCATACGACTCTAACCTACACTAATTGATCAAGTGCTTATATGATAAACACTTATCTATAAGCTATTTTCATACTCAAAGATAGAATGTGATTAGATTGTTTTTAGATATGCAGTAAGTTGTTTTCGTAAGCTATCATGTGTAGTCTATTGAAATAAGTCTAAAAAAGCTTACAAACATACTATAAACTATTTTTGTTAACTTTTCCAAACAGTTACACGACACAAGTGTTTATGCATATGTCCAAATAAACTGTATGCTCCTTTGTATATCTCTGCAGTGGTTCTAACATGGATTTTTGTGATCAATAGATATTCAAATGAAAAATCAGAAGCAAGAAGCTCTTCAGAGTCTATAGAAGCGAAATCCACTACATCTGAGGTATGTGGCTTCTGGTTTTGTGATCAATGGATATTTGCTAAGTTTGGTTAAAAAGCATTTATATTATGGATCCTGTTTTTTTTTTTTTTTTTAAATCTTTTCATATATTTACCAGGAGTGA

Protein sequence

>MS.gene065166.t1

MASVHSTVPHHTFLPSISTPKSKSISKPQNFPVSRFSTNPNFTKRAAVATKVSTEEFDVIAVQSNDITDQQEGLIVSRVEMEGGDGELAVTTTQVNGFGANEGLLSLEGFSSASGLVGNENEENVESVEKLLDRSINASIVLVAGTFALTKLLTIDSDYWHGWTIYEIVRYAPLHNWLAYEEALKTNPVFAKMVISGVVYSVGDWIAQCFEGKPLFEFDRARMFRSGLVGFALHGSLSHYYYQFCEELFPYKGWWVVPVKVAFDQTAWSAVWNSIYYTVVGILRFDSPINIFNELKATFFPMLTAGWKLWPFAHLITYGVIPVEQRLLWVDMIELIWVTILSTYSNEKSEARSSSESIEAKSTTSEE