Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06798.t1 | XP_013461473.1 | 97.8 | 415 | 9 | 0 | 1 | 415 | 1 | 415 | 5.90E-237 | 829.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06798.t1 | Q0WPK3 | 73.7 | 392 | 92 | 2 | 23 | 414 | 6 | 386 | 3.3e-167 | 589.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06798.t1 | A0A072V2C7 | 97.8 | 415 | 9 | 0 | 1 | 415 | 1 | 415 | 4.3e-237 | 829.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene06798 | -0.819357 | 1.21E-52 | -1.69E-46 |
| MS.gene049217 | MS.gene06798 | -0.856276 | 3.59E-62 | -1.69E-46 |
| MS.gene049222 | MS.gene06798 | -0.806041 | 9.97E-50 | -1.69E-46 |
| MS.gene049232 | MS.gene06798 | -0.815235 | 1.03E-51 | -1.69E-46 |
| MS.gene049265 | MS.gene06798 | 0.817768 | 2.78E-52 | -1.69E-46 |
| MS.gene049285 | MS.gene06798 | -0.819629 | 1.05E-52 | -1.69E-46 |
| MS.gene049320 | MS.gene06798 | -0.814956 | 1.18E-51 | -1.69E-46 |
| MS.gene049425 | MS.gene06798 | 0.929521 | 6.17E-93 | -1.69E-46 |
| MS.gene049611 | MS.gene06798 | 0.817248 | 3.64E-52 | -1.69E-46 |
| MS.gene049634 | MS.gene06798 | 0.81905 | 1.42E-52 | -1.69E-46 |
| MS.gene05010 | MS.gene06798 | -0.804694 | 1.91E-49 | -1.69E-46 |
| MS.gene050163 | MS.gene06798 | -0.801487 | 8.80E-49 | -1.69E-46 |
| MS.gene050165 | MS.gene06798 | -0.811696 | 6.15E-51 | -1.69E-46 |
| MS.gene050216 | MS.gene06798 | -0.829663 | 4.54E-55 | -1.69E-46 |
| MS.gene050333 | MS.gene06798 | -0.806175 | 9.35E-50 | -1.69E-46 |
| MS.gene050381 | MS.gene06798 | 0.805216 | 1.49E-49 | -1.69E-46 |
| MS.gene050504 | MS.gene06798 | -0.826852 | 2.16E-54 | -1.69E-46 |
| MS.gene050518 | MS.gene06798 | -0.825226 | 5.26E-54 | -1.69E-46 |
| MS.gene050612 | MS.gene06798 | -0.827116 | 1.87E-54 | -1.69E-46 |
| MS.gene050662 | MS.gene06798 | -0.805104 | 1.57E-49 | -1.69E-46 |
| MS.gene050675 | MS.gene06798 | -0.816883 | 4.40E-52 | -1.69E-46 |
| MS.gene050772 | MS.gene06798 | -0.806725 | 7.15E-50 | -1.69E-46 |
| MS.gene05079 | MS.gene06798 | 0.81141 | 7.10E-51 | -1.69E-46 |
| MS.gene050868 | MS.gene06798 | -0.810374 | 1.19E-50 | -1.69E-46 |
| MS.gene050871 | MS.gene06798 | -0.806425 | 8.28E-50 | -1.69E-46 |
| MS.gene05104 | MS.gene06798 | 0.822047 | 2.92E-53 | -1.69E-46 |
| MS.gene051127 | MS.gene06798 | 0.809951 | 1.47E-50 | -1.69E-46 |
| MS.gene051364 | MS.gene06798 | 0.806981 | 6.32E-50 | -1.69E-46 |
| MS.gene051366 | MS.gene06798 | 0.815852 | 7.48E-52 | -1.69E-46 |
| MS.gene051810 | MS.gene06798 | -0.801449 | 8.96E-49 | -1.69E-46 |
| MS.gene051858 | MS.gene06798 | -0.848411 | 6.24E-60 | -1.69E-46 |
| MS.gene051874 | MS.gene06798 | -0.802738 | 4.86E-49 | -1.69E-46 |
| MS.gene053420 | MS.gene06798 | 0.831114 | 2.00E-55 | -1.69E-46 |
| MS.gene053561 | MS.gene06798 | 0.833419 | 5.39E-56 | -1.69E-46 |
| MS.gene054642 | MS.gene06798 | -0.826459 | 2.68E-54 | -1.69E-46 |
| MS.gene054954 | MS.gene06798 | -0.823034 | 1.72E-53 | -1.69E-46 |
| MS.gene055154 | MS.gene06798 | 0.829015 | 6.52E-55 | -1.69E-46 |
| MS.gene055202 | MS.gene06798 | 0.805441 | 1.33E-49 | -1.69E-46 |
| MS.gene055206 | MS.gene06798 | -0.803941 | 2.74E-49 | -1.69E-46 |
| MS.gene055362 | MS.gene06798 | -0.808083 | 3.69E-50 | -1.69E-46 |
| MS.gene055502 | MS.gene06798 | -0.824476 | 7.91E-54 | -1.69E-46 |
| MS.gene055577 | MS.gene06798 | -0.80821 | 3.46E-50 | -1.69E-46 |
| MS.gene055634 | MS.gene06798 | -0.801304 | 9.59E-49 | -1.69E-46 |
| MS.gene055636 | MS.gene06798 | -0.811478 | 6.86E-51 | -1.69E-46 |
| MS.gene055638 | MS.gene06798 | -0.819252 | 1.28E-52 | -1.69E-46 |
| MS.gene056504 | MS.gene06798 | -0.803775 | 2.97E-49 | -1.69E-46 |
| MS.gene056657 | MS.gene06798 | -0.817341 | 3.47E-52 | -1.69E-46 |
| MS.gene057926 | MS.gene06798 | -0.80427 | 2.34E-49 | -1.69E-46 |
| MS.gene058117 | MS.gene06798 | 0.807242 | 5.56E-50 | -1.69E-46 |
| MS.gene058171 | MS.gene06798 | 0.820105 | 8.18E-53 | -1.69E-46 |
| MS.gene058173 | MS.gene06798 | 0.812798 | 3.54E-51 | -1.69E-46 |
| MS.gene058175 | MS.gene06798 | 0.827939 | 1.19E-54 | -1.69E-46 |
| MS.gene058419 | MS.gene06798 | -0.831576 | 1.54E-55 | -1.69E-46 |
| MS.gene058773 | MS.gene06798 | -0.810003 | 1.43E-50 | -1.69E-46 |
| MS.gene059022 | MS.gene06798 | -0.823696 | 1.21E-53 | -1.69E-46 |
| MS.gene059677 | MS.gene06798 | -0.821313 | 4.31E-53 | -1.69E-46 |
| MS.gene059703 | MS.gene06798 | 0.80356 | 3.29E-49 | -1.69E-46 |
| MS.gene059865 | MS.gene06798 | -0.816215 | 6.20E-52 | -1.69E-46 |
| MS.gene059902 | MS.gene06798 | -0.850337 | 1.81E-60 | -1.69E-46 |
| MS.gene060595 | MS.gene06798 | 0.804186 | 2.44E-49 | -1.69E-46 |
| MS.gene060703 | MS.gene06798 | -0.810704 | 1.01E-50 | -1.69E-46 |
| MS.gene061134 | MS.gene06798 | -0.804886 | 1.74E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene44120 | MS.gene06798 | PPI |
| MS.gene005249 | MS.gene06798 | PPI |
| MS.gene06556 | MS.gene06798 | PPI |
| MS.gene013452 | MS.gene06798 | PPI |
| MS.gene049425 | MS.gene06798 | PPI |
| MS.gene06798 | MS.gene013452 | PPI |
| MS.gene056055 | MS.gene06798 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06798.t1 | MTR_3g093590 | 97.831 | 415 | 9 | 0 | 1 | 415 | 1 | 415 | 0.0 | 850 |
| MS.gene06798.t1 | MTR_1g083230 | 58.313 | 403 | 138 | 7 | 16 | 414 | 4 | 380 | 8.78e-159 | 452 |
| MS.gene06798.t1 | MTR_7g108520 | 61.064 | 357 | 121 | 5 | 60 | 413 | 71 | 412 | 1.39e-150 | 433 |
| MS.gene06798.t1 | MTR_7g108520 | 61.064 | 357 | 121 | 5 | 60 | 413 | 71 | 412 | 1.39e-150 | 433 |
| MS.gene06798.t1 | MTR_1g088855 | 50.975 | 359 | 162 | 2 | 57 | 414 | 5 | 350 | 4.63e-127 | 371 |
| MS.gene06798.t1 | MTR_7g108520 | 66.805 | 241 | 80 | 0 | 60 | 300 | 71 | 311 | 1.39e-119 | 352 |
| MS.gene06798.t1 | MTR_4g130190 | 34.538 | 249 | 156 | 4 | 55 | 298 | 15 | 261 | 8.26e-44 | 154 |
| MS.gene06798.t1 | MTR_4g130190 | 34.538 | 249 | 156 | 4 | 55 | 298 | 15 | 261 | 1.57e-42 | 152 |
| MS.gene06798.t1 | MTR_4g130190 | 34.538 | 249 | 156 | 4 | 55 | 298 | 15 | 261 | 1.62e-42 | 153 |
| MS.gene06798.t1 | MTR_4g130190 | 33.005 | 203 | 131 | 3 | 101 | 298 | 1 | 203 | 8.10e-30 | 117 |
| MS.gene06798.t1 | MTR_4g130190 | 33.005 | 203 | 131 | 3 | 101 | 298 | 1 | 203 | 1.25e-29 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06798.t1 | AT3G56440 | 74.227 | 388 | 89 | 2 | 27 | 414 | 10 | 386 | 0.0 | 597 |
| MS.gene06798.t1 | AT2G40810 | 71.675 | 406 | 96 | 3 | 10 | 414 | 1 | 388 | 0.0 | 596 |
| MS.gene06798.t1 | AT2G40810 | 71.675 | 406 | 96 | 3 | 10 | 414 | 1 | 388 | 0.0 | 596 |
| MS.gene06798.t1 | AT3G56440 | 74.656 | 363 | 81 | 2 | 27 | 389 | 10 | 361 | 0.0 | 561 |
| MS.gene06798.t1 | AT3G56440 | 75.232 | 323 | 69 | 2 | 27 | 349 | 10 | 321 | 2.51e-177 | 498 |
| MS.gene06798.t1 | AT3G62770 | 57.323 | 396 | 145 | 5 | 23 | 414 | 45 | 420 | 1.30e-152 | 439 |
| MS.gene06798.t1 | AT3G62770 | 56.604 | 371 | 137 | 5 | 23 | 389 | 45 | 395 | 8.75e-140 | 405 |
| MS.gene06798.t1 | AT5G05150 | 47.666 | 407 | 164 | 5 | 10 | 413 | 1 | 361 | 6.79e-125 | 366 |
| MS.gene06798.t1 | AT2G40810 | 73.529 | 170 | 42 | 1 | 245 | 414 | 97 | 263 | 1.88e-82 | 254 |
| MS.gene06798.t1 | AT2G40810 | 53.333 | 120 | 40 | 2 | 10 | 128 | 1 | 105 | 9.27e-32 | 122 |
| MS.gene06798.t1 | AT4G30510 | 32.509 | 283 | 181 | 6 | 53 | 330 | 9 | 286 | 3.82e-38 | 141 |
| MS.gene06798.t1 | AT4G30510 | 32.766 | 235 | 150 | 5 | 101 | 330 | 1 | 232 | 2.97e-30 | 119 |
Find 106 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTTCCGATCATTGAATT+TGG | 0.146013 | 3.3:-77968419 | None:intergenic |
| CATTCTGAACTAAAATATTT+TGG | 0.153937 | 3.3:-77970582 | None:intergenic |
| ATCCCAAATCAAAACTTTAT+TGG | 0.177425 | 3.3:-77968717 | None:intergenic |
| TTGGGGTTGGCACCGGTATT+TGG | 0.187638 | 3.3:-77969879 | None:intergenic |
| AACCTTTCAAAGAGACTTTC+AGG | 0.219715 | 3.3:+77968597 | MS.gene06798:CDS |
| TGCAGCTTTGATCAAGTAAA+TGG | 0.230085 | 3.3:+77971608 | MS.gene06798:CDS |
| CTGATTTGTTCTCAGTTTCA+TGG | 0.238417 | 3.3:+77968513 | MS.gene06798:CDS |
| ACTAAATTCATTGTGGCATT+TGG | 0.273806 | 3.3:+77970636 | MS.gene06798:CDS |
| AACTTGAGAGTGAGGGTGTT+TGG | 0.279915 | 3.3:+77969768 | MS.gene06798:CDS |
| TCTTCATCAAATTGATACTA+TGG | 0.283426 | 3.3:+77968871 | MS.gene06798:CDS |
| TCAGAGTGAAGCATGCAATT+TGG | 0.287147 | 3.3:-77969030 | None:intergenic |
| TCCCAAATCAAAACTTTATT+GGG | 0.292270 | 3.3:-77968716 | None:intergenic |
| CATGAAAGATAATGATGAAT+TGG | 0.295519 | 3.3:-77969898 | None:intergenic |
| GATATATGTTTATAACTTCA+TGG | 0.302452 | 3.3:+77968838 | MS.gene06798:CDS |
| ACTTGAGAGTGAGGGTGTTT+GGG | 0.303097 | 3.3:+77969769 | MS.gene06798:CDS |
| CAGAGTGAAGCATGCAATTT+GGG | 0.308247 | 3.3:-77969029 | None:intergenic |
| GTTCTCAGTTTCATGGAATC+AGG | 0.310536 | 3.3:+77968520 | MS.gene06798:CDS |
| CCATTCAAATACATTTGTTA+TGG | 0.324119 | 3.3:+77968925 | MS.gene06798:CDS |
| AACTTTATTGGGTGGATAGT+TGG | 0.360324 | 3.3:-77968705 | None:intergenic |
| ATGAAAGATAATGATGAATT+GGG | 0.360564 | 3.3:-77969897 | None:intergenic |
| GAAGATGAGGCCCCACTATT+GGG | 0.364649 | 3.3:-77968449 | None:intergenic |
| AGAAGATGAGGCCCCACTAT+TGG | 0.366717 | 3.3:-77968450 | None:intergenic |
| GGGCCTCATCTTCTCTTTCC+CGG | 0.370929 | 3.3:+77968459 | MS.gene06798:CDS |
| AGCATGCAATTTGGGAATCA+TGG | 0.405618 | 3.3:-77969021 | None:intergenic |
| GGTTAGAAGAGGGGTGGATA+GGG | 0.417025 | 3.3:+77969665 | MS.gene06798:intron |
| CACTTGATGCTGCCAACCAC+TGG | 0.429688 | 3.3:-77969722 | None:intergenic |
| TTGATACTATGGCAAATCCT+AGG | 0.431047 | 3.3:+77968882 | MS.gene06798:CDS |
| GCAGCTTTGATCAAGTAAAT+GGG | 0.450799 | 3.3:+77971609 | MS.gene06798:CDS |
| CTGTCATTGATGTCTGCATC+TGG | 0.455833 | 3.3:-77968482 | None:intergenic |
| AGGTTAGAAGAGGGGTGGAT+AGG | 0.457915 | 3.3:+77969664 | MS.gene06798:intron |
| AATTGTGAATACCCCAATAG+TGG | 0.458125 | 3.3:+77968437 | MS.gene06798:CDS |
| AGAATCTTCAATACAATGGA+TGG | 0.459968 | 3.3:+77969103 | MS.gene06798:CDS |
| ACCGGTATTTGGAGAAATCA+AGG | 0.473373 | 3.3:-77969868 | None:intergenic |
| AGCAACATCCTAGCGCTTGT+TGG | 0.476042 | 3.3:+77968668 | MS.gene06798:CDS |
| CAGGCCCTTGGACAGCAGTT+GGG | 0.479532 | 3.3:-77969809 | None:intergenic |
| CATTGATGTCTGCATCTGGC+CGG | 0.479957 | 3.3:-77968478 | None:intergenic |
| TTCCATCCATGCCAGAGATT+AGG | 0.483661 | 3.3:-77970674 | None:intergenic |
| GCTGCCAACCACTGGACATT+GGG | 0.488358 | 3.3:-77969714 | None:intergenic |
| GAAGTTCGAGTTGAACACTT+TGG | 0.488765 | 3.3:+77968971 | MS.gene06798:CDS |
| ACATTTGTTATGGCTTGTCC+AGG | 0.490027 | 3.3:+77968935 | MS.gene06798:CDS |
| TGATACTATGGCAAATCCTA+GGG | 0.491747 | 3.3:+77968883 | MS.gene06798:CDS |
| CCCTTGATTTCTCCAAATAC+CGG | 0.496555 | 3.3:+77969867 | MS.gene06798:CDS |
| GTCTCCCAATGTCCAGTGGT+TGG | 0.498399 | 3.3:+77969710 | MS.gene06798:CDS |
| ACATTTAGATCTGAAGTTCG+TGG | 0.499114 | 3.3:+77968770 | MS.gene06798:CDS |
| GTCCTAATCTCTGGCATGGA+TGG | 0.500489 | 3.3:+77970672 | MS.gene06798:CDS |
| CCATAACAAATGTATTTGAA+TGG | 0.510743 | 3.3:-77968925 | None:intergenic |
| TTAGCTGCTGGAACAAGTCA+TGG | 0.511790 | 3.3:+77968554 | MS.gene06798:CDS |
| GAATTCTGATGAAGTAGTAC+AGG | 0.516241 | 3.3:-77969828 | None:intergenic |
| CGCCTGAAAGTCTCTTTGAA+AGG | 0.516860 | 3.3:-77968599 | None:intergenic |
| CAGAACACTGTCCTAATCTC+TGG | 0.520013 | 3.3:+77970663 | MS.gene06798:CDS |
| TGCTTCACTCTGACAACGGA+CGG | 0.522941 | 3.3:+77969040 | MS.gene06798:CDS |
| CTATCGTGTAGGTTAGAAGA+GGG | 0.524773 | 3.3:+77969655 | MS.gene06798:intron |
| GCATGCAATTTGGGAATCAT+GGG | 0.526357 | 3.3:-77969020 | None:intergenic |
| ACAGGCCCTTGGACAGCAGT+TGG | 0.528221 | 3.3:-77969810 | None:intergenic |
| TCGTCTGTTTCAACATCTCA+AGG | 0.528457 | 3.3:+77968389 | MS.gene06798:CDS |
| ATATTTCCAAATTCAATGAT+CGG | 0.530341 | 3.3:+77968413 | MS.gene06798:CDS |
| CTTGCAACTGCTAGTGAGAA+GGG | 0.530985 | 3.3:+77969070 | MS.gene06798:CDS |
| TGATGAATTGGGGTTGGCAC+CGG | 0.533284 | 3.3:-77969886 | None:intergenic |
| GACTACGGTTGCTTAGCTGC+TGG | 0.535019 | 3.3:+77968542 | MS.gene06798:CDS |
| CAAATCAAAACTTTATTGGG+TGG | 0.537171 | 3.3:-77968713 | None:intergenic |
| GATCATCAGAGCAGGTGCAT+TGG | 0.542145 | 3.3:+77968740 | MS.gene06798:CDS |
| ATTGATGTCTGCATCTGGCC+GGG | 0.542391 | 3.3:-77968477 | None:intergenic |
| ATACGCCCAACTGCTGTCCA+AGG | 0.547866 | 3.3:+77969804 | MS.gene06798:CDS |
| CTCTGTCTCCCAATGTCCAG+TGG | 0.551409 | 3.3:+77969706 | MS.gene06798:CDS |
| TAATCTCTGGCATGGATGGA+AGG | 0.552266 | 3.3:+77970676 | MS.gene06798:CDS |
| GCTTCACTCTGACAACGGAC+GGG | 0.555040 | 3.3:+77969041 | MS.gene06798:CDS |
| ACTTCTCCTTTGTGACGACC+TGG | 0.555547 | 3.3:-77968953 | None:intergenic |
| GATGAAGTAGTACAGGCCCT+TGG | 0.557475 | 3.3:-77969821 | None:intergenic |
| TCTTGCAACTGCTAGTGAGA+AGG | 0.557640 | 3.3:+77969069 | MS.gene06798:CDS |
| GAGAGTGAGGGTGTTTGGGG+AGG | 0.558785 | 3.3:+77969773 | MS.gene06798:CDS |
| ATTGTGAATACCCCAATAGT+GGG | 0.562593 | 3.3:+77968438 | MS.gene06798:CDS |
| CTTGAGAGTGAGGGTGTTTG+GGG | 0.564799 | 3.3:+77969770 | MS.gene06798:CDS |
| CGTGTAGGTTAGAAGAGGGG+TGG | 0.568066 | 3.3:+77969659 | MS.gene06798:intron |
| GACGAATTGATATGAGATGA+GGG | 0.569550 | 3.3:-77968371 | None:intergenic |
| CACTGTCCTAATCTCTGGCA+TGG | 0.571130 | 3.3:+77970668 | MS.gene06798:CDS |
| ACGAATTGATATGAGATGAG+GGG | 0.571530 | 3.3:-77968370 | None:intergenic |
| CTACAGCACCAACAAGCGCT+AGG | 0.572951 | 3.3:-77968676 | None:intergenic |
| TCATCATTATCTTTCATGAG+AGG | 0.573870 | 3.3:+77969903 | MS.gene06798:CDS |
| TGCATGCTTCACTCTGACAA+CGG | 0.580675 | 3.3:+77969036 | MS.gene06798:CDS |
| TGCTGCCAACCACTGGACAT+TGG | 0.582381 | 3.3:-77969715 | None:intergenic |
| TTTGGGATGATCATCAGAGC+AGG | 0.585812 | 3.3:+77968732 | MS.gene06798:CDS |
| GAATCTTCAATACAATGGAT+GGG | 0.589619 | 3.3:+77969104 | MS.gene06798:CDS |
| ATATATTCAACTTGAGAGTG+AGG | 0.590254 | 3.3:+77969760 | MS.gene06798:CDS |
| AGATAATGATGAATTGGGGT+TGG | 0.592572 | 3.3:-77969892 | None:intergenic |
| AAGATGAGGCCCCACTATTG+GGG | 0.595901 | 3.3:-77968448 | None:intergenic |
| TCTCACTAGCAGTTGCAAGA+AGG | 0.597081 | 3.3:-77969066 | None:intergenic |
| CGAATTGATATGAGATGAGG+GGG | 0.598276 | 3.3:-77968369 | None:intergenic |
| GATTAGAATCTTCAATACAA+TGG | 0.601484 | 3.3:+77969099 | MS.gene06798:CDS |
| AGACGAATTGATATGAGATG+AGG | 0.607029 | 3.3:-77968372 | None:intergenic |
| TATATTCAACTTGAGAGTGA+GGG | 0.607920 | 3.3:+77969761 | MS.gene06798:CDS |
| TCTATCGTGTAGGTTAGAAG+AGG | 0.613791 | 3.3:+77969654 | MS.gene06798:intron |
| CAGCTTTGATCAAGTAAATG+GGG | 0.615526 | 3.3:+77971610 | MS.gene06798:CDS |
| TACGCCCAACTGCTGTCCAA+GGG | 0.621281 | 3.3:+77969805 | MS.gene06798:CDS |
| GTTTCATGGAATCAGGACTA+CGG | 0.621760 | 3.3:+77968527 | MS.gene06798:CDS |
| TGGCCGGGAAAGAGAAGATG+AGG | 0.624207 | 3.3:-77968462 | None:intergenic |
| TGAAAACACTAAATTCATTG+TGG | 0.629098 | 3.3:+77970629 | MS.gene06798:CDS |
| GCTTGTCCAGGTCGTCACAA+AGG | 0.632605 | 3.3:+77968947 | MS.gene06798:CDS |
| CCGGTATTTGGAGAAATCAA+GGG | 0.637476 | 3.3:-77969867 | None:intergenic |
| CAAGCGCTAGGATGTTGCTA+CGG | 0.644150 | 3.3:-77968664 | None:intergenic |
| TTGGCAGCATCAAGTGACAA+AGG | 0.665997 | 3.3:+77969729 | MS.gene06798:CDS |
| GATACTATGGCAAATCCTAG+GGG | 0.691243 | 3.3:+77968884 | MS.gene06798:CDS |
| TGAAAGATAATGATGAATTG+GGG | 0.693897 | 3.3:-77969896 | None:intergenic |
| AGCTTTGATCAAGTAAATGG+GGG | 0.695560 | 3.3:+77971611 | MS.gene06798:CDS |
| TATCGTGTAGGTTAGAAGAG+GGG | 0.696069 | 3.3:+77969656 | MS.gene06798:intron |
| TTGTGAATACCCCAATAGTG+GGG | 0.696105 | 3.3:+77968439 | MS.gene06798:CDS |
| ATACTATGGCAAATCCTAGG+GGG | 0.718473 | 3.3:+77968885 | MS.gene06798:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCTTGACATTTATAATTA+TGG | + | chr3.3:77971220-77971239 | MS.gene06798:intron | 15.0% |
| !! | CAAATTATGATAATAATTTC+AGG | - | chr3.3:77969960-77969979 | None:intergenic | 15.0% |
| !! | CTGAAATTATTATCATAATT+TGG | + | chr3.3:77969958-77969977 | MS.gene06798:intron | 15.0% |
| !! | GACAAATATTAATAAGTTAA+TGG | + | chr3.3:77970980-77970999 | MS.gene06798:intron | 15.0% |
| !!! | ATCTGAAATATATTATTTTG+AGG | - | chr3.3:77971445-77971464 | None:intergenic | 15.0% |
| !!! | ATTTAATTTTTGAAAGAACA+GGG | - | chr3.3:77970748-77970767 | None:intergenic | 15.0% |
| !!! | TATTTTCATATCTATATATG+AGG | + | chr3.3:77969230-77969249 | MS.gene06798:intron | 15.0% |
| !! | AAAAATATCACATGATTCAA+TGG | - | chr3.3:77970913-77970932 | None:intergenic | 20.0% |
| !! | ACATAAAAAAGATCAAAAGT+AGG | + | chr3.3:77970185-77970204 | MS.gene06798:intron | 20.0% |
| !! | ACCTAAAAACTATCTAAAAA+CGG | - | chr3.3:77970060-77970079 | None:intergenic | 20.0% |
| !! | AGATATGAAAATAAAAAACC+TGG | - | chr3.3:77969223-77969242 | None:intergenic | 20.0% |
| !! | ATATTTCCAAATTCAATGAT+CGG | + | chr3.3:77968413-77968432 | MS.gene06798:CDS | 20.0% |
| !! | ATGAAAGATAATGATGAATT+GGG | - | chr3.3:77969900-77969919 | None:intergenic | 20.0% |
| !! | CATAAAAAAGATCAAAAGTA+GGG | + | chr3.3:77970186-77970205 | MS.gene06798:intron | 20.0% |
| !! | CTTTCAAAAATTAAATCCTT+AGG | + | chr3.3:77970752-77970771 | MS.gene06798:intron | 20.0% |
| !! | GATATATGTTTATAACTTCA+TGG | + | chr3.3:77968838-77968857 | MS.gene06798:CDS | 20.0% |
| !! | GATATGAAAATAAAAAACCT+GGG | - | chr3.3:77969222-77969241 | None:intergenic | 20.0% |
| !! | TTTGAAAATGTAAAAACCTA+AGG | - | chr3.3:77970771-77970790 | None:intergenic | 20.0% |
| !!! | AAGTTTTAATAGTTATTCAG+CGG | + | chr3.3:77971255-77971274 | MS.gene06798:intron | 20.0% |
| !!! | ACAATTTTCTTTGCATATTT+TGG | + | chr3.3:77969448-77969467 | MS.gene06798:intron | 20.0% |
| !!! | CAAAATATTTTAGTTCAGAA+TGG | + | chr3.3:77970583-77970602 | MS.gene06798:CDS | 20.0% |
| !!! | CATTCTGAACTAAAATATTT+TGG | - | chr3.3:77970585-77970604 | None:intergenic | 20.0% |
| !!! | CTATTGAAATTATTGGTTTA+TGG | + | chr3.3:77970827-77970846 | MS.gene06798:intron | 20.0% |
| !!! | GATTTAATTTTTGAAAGAAC+AGG | - | chr3.3:77970749-77970768 | None:intergenic | 20.0% |
| !!! | TACATTTTCAAATAATGTTG+AGG | + | chr3.3:77970779-77970798 | MS.gene06798:intron | 20.0% |
| !!! | TAGAATACAATTTTACAATC+CGG | + | chr3.3:77970887-77970906 | MS.gene06798:intron | 20.0% |
| !!! | TGTTTGTTTTATCATTCTTT+TGG | + | chr3.3:77970344-77970363 | MS.gene06798:intron | 20.0% |
| !!! | TTGTGAATTTTTTTATTGTG+TGG | + | chr3.3:77969381-77969400 | MS.gene06798:intron | 20.0% |
| !!! | TTTAATTTTTGAAAGAACAG+GGG | - | chr3.3:77970747-77970766 | None:intergenic | 20.0% |
| !!! | TTTGTTTGAAAGTATATTGT+TGG | + | chr3.3:77971180-77971199 | MS.gene06798:intron | 20.0% |
| ! | AAAATAAAAAACCTGGGAAA+TGG | - | chr3.3:77969216-77969235 | None:intergenic | 25.0% |
| ! | AAGTATTTGAATTGGTAAAC+TGG | - | chr3.3:77970006-77970025 | None:intergenic | 25.0% |
| ! | AGAGAACATCCATAAATATA+TGG | - | chr3.3:77970448-77970467 | None:intergenic | 25.0% |
| ! | ATCCCAAATCAAAACTTTAT+TGG | - | chr3.3:77968720-77968739 | None:intergenic | 25.0% |
| ! | CAAAAAACAAGTTGTATGTA+AGG | - | chr3.3:77971572-77971591 | None:intergenic | 25.0% |
| ! | CATGAAAGATAATGATGAAT+TGG | - | chr3.3:77969901-77969920 | None:intergenic | 25.0% |
| ! | CCATAACAAATGTATTTGAA+TGG | - | chr3.3:77968928-77968947 | None:intergenic | 25.0% |
| ! | GAAATTAATGTATCCTTTGT+AGG | + | chr3.3:77971473-77971492 | MS.gene06798:intron | 25.0% |
| ! | GAGAACATCCATAAATATAT+GGG | - | chr3.3:77970447-77970466 | None:intergenic | 25.0% |
| ! | GATTAGAATCTTCAATACAA+TGG | + | chr3.3:77969099-77969118 | MS.gene06798:CDS | 25.0% |
| ! | TAGATTCAAATGTCTCAATT+AGG | - | chr3.3:77971137-77971156 | None:intergenic | 25.0% |
| ! | TAGTAGAACCCATATATTTA+TGG | + | chr3.3:77970436-77970455 | MS.gene06798:intron | 25.0% |
| ! | TCCCAAATCAAAACTTTATT+GGG | - | chr3.3:77968719-77968738 | None:intergenic | 25.0% |
| ! | TCTTCATCAAATTGATACTA+TGG | + | chr3.3:77968871-77968890 | MS.gene06798:CDS | 25.0% |
| ! | TGAAAACAAATTACACATGT+GGG | - | chr3.3:77971302-77971321 | None:intergenic | 25.0% |
| ! | TGAAAACACTAAATTCATTG+TGG | + | chr3.3:77970629-77970648 | MS.gene06798:CDS | 25.0% |
| ! | TGAAAGATAATGATGAATTG+GGG | - | chr3.3:77969899-77969918 | None:intergenic | 25.0% |
| ! | TGGAAAGTTCAACATATTAA+TGG | - | chr3.3:77969182-77969201 | None:intergenic | 25.0% |
| ! | TTGAAAACAAATTACACATG+TGG | - | chr3.3:77971303-77971322 | None:intergenic | 25.0% |
| ! | TTGCATGCTATTGAAATTAT+TGG | + | chr3.3:77970820-77970839 | MS.gene06798:intron | 25.0% |
| ! | TTTAAGAATGATCAAGAATC+AGG | - | chr3.3:77969413-77969432 | None:intergenic | 25.0% |
| ! | TTTCATATCTATATATGAGG+TGG | + | chr3.3:77969233-77969252 | MS.gene06798:intron | 25.0% |
| !! | AATCAATGATTTTGCACATT+AGG | + | chr3.3:77970319-77970338 | MS.gene06798:intron | 25.0% |
| !! | ACAATGAATTTAGTGTTTTC+AGG | - | chr3.3:77970630-77970649 | None:intergenic | 25.0% |
| !! | CCATTCAAATACATTTGTTA+TGG | + | chr3.3:77968925-77968944 | MS.gene06798:CDS | 25.0% |
| !! | GCTAAAACATTGTTATTGTA+AGG | - | chr3.3:77969480-77969499 | None:intergenic | 25.0% |
| !! | GGAAAATTGCATGATATTTT+TGG | + | chr3.3:77970503-77970522 | MS.gene06798:intron | 25.0% |
| !! | TGAAAATGTTTTACTTGACT+TGG | - | chr3.3:77969358-77969377 | None:intergenic | 25.0% |
| !! | TGCTCTATTAGATTTACTTT+TGG | + | chr3.3:77970243-77970262 | MS.gene06798:intron | 25.0% |
| !! | TTTGAAAGTATATTGTTGGA+TGG | + | chr3.3:77971184-77971203 | MS.gene06798:intron | 25.0% |
| !!! | ACCCAATAAAGTTTTGATTT+GGG | + | chr3.3:77968715-77968734 | MS.gene06798:CDS | 25.0% |
| !!! | ATTTTCTTTGCATATTTTGG+AGG | + | chr3.3:77969451-77969470 | MS.gene06798:intron | 25.0% |
| !!! | TGTTTCTTTTTTTCCTACAA+AGG | - | chr3.3:77971489-77971508 | None:intergenic | 25.0% |
| !!! | TTAATTTTTGAAAGAACAGG+GGG | - | chr3.3:77970746-77970765 | None:intergenic | 25.0% |
| !!! | TTGTTAGCTTACTTTTAAGA+TGG | + | chr3.3:77970482-77970501 | MS.gene06798:intron | 25.0% |
| !!! | TTTTTAGGTCTTCATCATTT+AGG | + | chr3.3:77970071-77970090 | MS.gene06798:intron | 25.0% |
| AAGATCAAACTGAATCCTAT+TGG | - | chr3.3:77969596-77969615 | None:intergenic | 30.0% | |
| ACTAAATTCATTGTGGCATT+TGG | + | chr3.3:77970636-77970655 | MS.gene06798:CDS | 30.0% | |
| AGAATCTTCAATACAATGGA+TGG | + | chr3.3:77969103-77969122 | MS.gene06798:CDS | 30.0% | |
| ATATATTCAACTTGAGAGTG+AGG | + | chr3.3:77969760-77969779 | MS.gene06798:CDS | 30.0% | |
| ATTGTTTCCAGAGAGAAAAT+AGG | - | chr3.3:77970550-77970569 | None:intergenic | 30.0% | |
| CAAATCAAAACTTTATTGGG+TGG | - | chr3.3:77968716-77968735 | None:intergenic | 30.0% | |
| CAATTTCCGATCATTGAATT+TGG | - | chr3.3:77968422-77968441 | None:intergenic | 30.0% | |
| CTCTCTTCATTTAATGAACT+TGG | + | chr3.3:77971527-77971546 | MS.gene06798:intron | 30.0% | |
| GAATCTTCAATACAATGGAT+GGG | + | chr3.3:77969104-77969123 | MS.gene06798:CDS | 30.0% | |
| GATGTTATTACATGCTTGAA+AGG | - | chr3.3:77970413-77970432 | None:intergenic | 30.0% | |
| GATTATTGAACACGAAAAGA+GGG | - | chr3.3:77969628-77969647 | None:intergenic | 30.0% | |
| GGGAAATGGAAAATATGAAA+TGG | - | chr3.3:77969202-77969221 | None:intergenic | 30.0% | |
| TATATTCAACTTGAGAGTGA+GGG | + | chr3.3:77969761-77969780 | MS.gene06798:CDS | 30.0% | |
| TCATCATTATCTTTCATGAG+AGG | + | chr3.3:77969903-77969922 | MS.gene06798:CDS | 30.0% | |
| TCATCATTTAGGAAACTTGA+TGG | + | chr3.3:77970082-77970101 | MS.gene06798:intron | 30.0% | |
| TTCATAAAAACAGGAGACTT+CGG | - | chr3.3:77970140-77970159 | None:intergenic | 30.0% | |
| ! | TTTCATATTTTCCATTTCCC+AGG | + | chr3.3:77969202-77969221 | MS.gene06798:intron | 30.0% |
| !! | AATCGATTTTTCTATCGTGT+AGG | + | chr3.3:77969644-77969663 | MS.gene06798:intron | 30.0% |
| !! | ATTTACTTTTGGATTTGTGC+AGG | + | chr3.3:77970254-77970273 | MS.gene06798:intron | 30.0% |
| !! | TTTACTTTTGGATTTGTGCA+GGG | + | chr3.3:77970255-77970274 | MS.gene06798:intron | 30.0% |
| !!! | CACCCAATAAAGTTTTGATT+TGG | + | chr3.3:77968714-77968733 | MS.gene06798:CDS | 30.0% |
| !!! | GCCGTTTTTAGATAGTTTTT+AGG | + | chr3.3:77970056-77970075 | MS.gene06798:intron | 30.0% |
| !!! | TTTTGGTTTATGAGTTATCC+AGG | + | chr3.3:77970361-77970380 | MS.gene06798:intron | 30.0% |
| AACCTTTCAAAGAGACTTTC+AGG | + | chr3.3:77968597-77968616 | MS.gene06798:CDS | 35.0% | |
| AACTTTATTGGGTGGATAGT+TGG | - | chr3.3:77968708-77968727 | None:intergenic | 35.0% | |
| AAGTGGAACTTCTTTCCAAT+AGG | + | chr3.3:77969578-77969597 | MS.gene06798:intron | 35.0% | |
| AATTGTGAATACCCCAATAG+TGG | + | chr3.3:77968437-77968456 | MS.gene06798:CDS | 35.0% | |
| ACAAGTTGTATGTAAGGATG+AGG | - | chr3.3:77971566-77971585 | None:intergenic | 35.0% | |
| ACGAATTGATATGAGATGAG+GGG | - | chr3.3:77968373-77968392 | None:intergenic | 35.0% | |
| AGACGAATTGATATGAGATG+AGG | - | chr3.3:77968375-77968394 | None:intergenic | 35.0% | |
| AGATAATGATGAATTGGGGT+TGG | - | chr3.3:77969895-77969914 | None:intergenic | 35.0% | |
| AGCTGGCTAAGTATTTGAAT+TGG | - | chr3.3:77970014-77970033 | None:intergenic | 35.0% | |
| ATATCACATGATTCAATGGC+CGG | - | chr3.3:77970909-77970928 | None:intergenic | 35.0% | |
| ATCAAAGATGTAATGCTACC+TGG | - | chr3.3:77970382-77970401 | None:intergenic | 35.0% | |
| ATTGTGAATACCCCAATAGT+GGG | + | chr3.3:77968438-77968457 | MS.gene06798:CDS | 35.0% | |
| CGATTATTGAACACGAAAAG+AGG | - | chr3.3:77969629-77969648 | None:intergenic | 35.0% | |
| GAATTCTGATGAAGTAGTAC+AGG | - | chr3.3:77969831-77969850 | None:intergenic | 35.0% | |
| GACGAATTGATATGAGATGA+GGG | - | chr3.3:77968374-77968393 | None:intergenic | 35.0% | |
| GGTAAACTGGAAAAGATGAT+TGG | - | chr3.3:77969993-77970012 | None:intergenic | 35.0% | |
| TGATACTATGGCAAATCCTA+GGG | + | chr3.3:77968883-77968902 | MS.gene06798:CDS | 35.0% | |
| TTAAGCTGTATGTCTACAGT+TGG | - | chr3.3:77971080-77971099 | None:intergenic | 35.0% | |
| TTCAGGCGTGATTTAAAAAG+TGG | + | chr3.3:77968614-77968633 | MS.gene06798:CDS | 35.0% | |
| TTGATACTATGGCAAATCCT+AGG | + | chr3.3:77968882-77968901 | MS.gene06798:CDS | 35.0% | |
| ! | ACATTTAGATCTGAAGTTCG+TGG | + | chr3.3:77968770-77968789 | MS.gene06798:CDS | 35.0% |
| ! | AGCTTTGATCAAGTAAATGG+GGG | + | chr3.3:77971611-77971630 | MS.gene06798:CDS | 35.0% |
| ! | CAGCTTTGATCAAGTAAATG+GGG | + | chr3.3:77971610-77971629 | MS.gene06798:CDS | 35.0% |
| ! | GCAGCTTTGATCAAGTAAAT+GGG | + | chr3.3:77971609-77971628 | MS.gene06798:CDS | 35.0% |
| ! | GTTCTTACCTATTTTCTCTC+TGG | + | chr3.3:77970540-77970559 | MS.gene06798:intron | 35.0% |
| ! | TCATGTAAGATGATTTGTGC+AGG | - | chr3.3:77970299-77970318 | None:intergenic | 35.0% |
| ! | TGCAGCTTTGATCAAGTAAA+TGG | + | chr3.3:77971608-77971627 | MS.gene06798:CDS | 35.0% |
| ! | TTTTACGCCTCAACATTCTT+GGG | + | chr3.3:77969536-77969555 | MS.gene06798:intron | 35.0% |
| !! | ATTTAGTGTTTTCAGGCAAG+TGG | - | chr3.3:77970623-77970642 | None:intergenic | 35.0% |
| !! | CTGATTTGTTCTCAGTTTCA+TGG | + | chr3.3:77968513-77968532 | MS.gene06798:CDS | 35.0% |
| !! | TTATTGGTTTATGGTGATCC+AGG | + | chr3.3:77970836-77970855 | MS.gene06798:intron | 35.0% |
| ACCGGTATTTGGAGAAATCA+AGG | - | chr3.3:77969871-77969890 | None:intergenic | 40.0% | |
| AGCATGCAATTTGGGAATCA+TGG | - | chr3.3:77969024-77969043 | None:intergenic | 40.0% | |
| AGGCGTGATTTAAAAAGTGG+CGG | + | chr3.3:77968617-77968636 | MS.gene06798:CDS | 40.0% | |
| ATACTATGGCAAATCCTAGG+GGG | + | chr3.3:77968885-77968904 | MS.gene06798:CDS | 40.0% | |
| CAGAGTGAAGCATGCAATTT+GGG | - | chr3.3:77969032-77969051 | None:intergenic | 40.0% | |
| CCAGCACAGTTCATAAAAAC+AGG | - | chr3.3:77970149-77970168 | None:intergenic | 40.0% | |
| CCCTTGATTTCTCCAAATAC+CGG | + | chr3.3:77969867-77969886 | MS.gene06798:CDS | 40.0% | |
| CCGGTATTTGGAGAAATCAA+GGG | - | chr3.3:77969870-77969889 | None:intergenic | 40.0% | |
| CGAATTGATATGAGATGAGG+GGG | - | chr3.3:77968372-77968391 | None:intergenic | 40.0% | |
| CTATCGTGTAGGTTAGAAGA+GGG | + | chr3.3:77969655-77969674 | MS.gene06798:intron | 40.0% | |
| GATACTATGGCAAATCCTAG+GGG | + | chr3.3:77968884-77968903 | MS.gene06798:CDS | 40.0% | |
| GCATGCAATTTGGGAATCAT+GGG | - | chr3.3:77969023-77969042 | None:intergenic | 40.0% | |
| GTAGCTTGATTGCGAGTTAA+GGG | - | chr3.3:77971115-77971134 | None:intergenic | 40.0% | |
| GTTCTCAGTTTCATGGAATC+AGG | + | chr3.3:77968520-77968539 | MS.gene06798:CDS | 40.0% | |
| GTTTCATGGAATCAGGACTA+CGG | + | chr3.3:77968527-77968546 | MS.gene06798:CDS | 40.0% | |
| TATCGTGTAGGTTAGAAGAG+GGG | + | chr3.3:77969656-77969675 | MS.gene06798:intron | 40.0% | |
| TCAAATACTTAGCCAGCTCA+GGG | + | chr3.3:77970016-77970035 | MS.gene06798:intron | 40.0% | |
| TCAGAGTGAAGCATGCAATT+TGG | - | chr3.3:77969033-77969052 | None:intergenic | 40.0% | |
| TCGTCTGTTTCAACATCTCA+AGG | + | chr3.3:77968389-77968408 | MS.gene06798:CDS | 40.0% | |
| TCTATCGTGTAGGTTAGAAG+AGG | + | chr3.3:77969654-77969673 | MS.gene06798:intron | 40.0% | |
| TTCAAATACTTAGCCAGCTC+AGG | + | chr3.3:77970015-77970034 | MS.gene06798:intron | 40.0% | |
| TTCCACTTCCAAAACTATCG+TGG | - | chr3.3:77969566-77969585 | None:intergenic | 40.0% | |
| TTGTGAATACCCCAATAGTG+GGG | + | chr3.3:77968439-77968458 | MS.gene06798:CDS | 40.0% | |
| ! | CTTTTACGCCTCAACATTCT+TGG | + | chr3.3:77969535-77969554 | MS.gene06798:intron | 40.0% |
| ! | TTCTCTCTGGAAACAATGCA+GGG | + | chr3.3:77970553-77970572 | MS.gene06798:intron | 40.0% |
| ! | TTTCTCTCTGGAAACAATGC+AGG | + | chr3.3:77970552-77970571 | MS.gene06798:intron | 40.0% |
| !! | ACATTTGTTATGGCTTGTCC+AGG | + | chr3.3:77968935-77968954 | MS.gene06798:CDS | 40.0% |
| !! | GAAGTTCGAGTTGAACACTT+TGG | + | chr3.3:77968971-77968990 | MS.gene06798:CDS | 40.0% |
| !!! | CCTGTTTTTATGAACTGTGC+TGG | + | chr3.3:77970146-77970165 | MS.gene06798:intron | 40.0% |
| CAGAACACTGTCCTAATCTC+TGG | + | chr3.3:77970663-77970682 | MS.gene06798:CDS | 45.0% | |
| CATAATATAGCTCCCTGAGC+TGG | - | chr3.3:77970031-77970050 | None:intergenic | 45.0% | |
| CGCCTGAAAGTCTCTTTGAA+AGG | - | chr3.3:77968602-77968621 | None:intergenic | 45.0% | |
| CTGTCATTGATGTCTGCATC+TGG | - | chr3.3:77968485-77968504 | None:intergenic | 45.0% | |
| CTTGCAACTGCTAGTGAGAA+GGG | + | chr3.3:77969070-77969089 | MS.gene06798:CDS | 45.0% | |
| GGGTCTCGTTTACAAGAAGT+AGG | + | chr3.3:77969124-77969143 | MS.gene06798:intron | 45.0% | |
| GGTAGCTTGATTGCGAGTTA+AGG | - | chr3.3:77971116-77971135 | None:intergenic | 45.0% | |
| TAATCTCTGGCATGGATGGA+AGG | + | chr3.3:77970676-77970695 | MS.gene06798:CDS | 45.0% | |
| TCAATTATACAAGCCCAGCC+TGG | - | chr3.3:77970857-77970876 | None:intergenic | 45.0% | |
| TCAGGTGCTCTGCATTACAA+AGG | - | chr3.3:77969942-77969961 | None:intergenic | 45.0% | |
| TCTCACTAGCAGTTGCAAGA+AGG | - | chr3.3:77969069-77969088 | None:intergenic | 45.0% | |
| TCTTGCAACTGCTAGTGAGA+AGG | + | chr3.3:77969069-77969088 | MS.gene06798:CDS | 45.0% | |
| TGCATGCTTCACTCTGACAA+CGG | + | chr3.3:77969036-77969055 | MS.gene06798:CDS | 45.0% | |
| TGGACAACCCAAGAATGTTG+AGG | - | chr3.3:77969546-77969565 | None:intergenic | 45.0% | |
| TTAGCTGCTGGAACAAGTCA+TGG | + | chr3.3:77968554-77968573 | MS.gene06798:CDS | 45.0% | |
| TTCCATCCATGCCAGAGATT+AGG | - | chr3.3:77970677-77970696 | None:intergenic | 45.0% | |
| TTGGCAGCATCAAGTGACAA+AGG | + | chr3.3:77969729-77969748 | MS.gene06798:CDS | 45.0% | |
| ! | TCTCTCTGGAAACAATGCAG+GGG | + | chr3.3:77970554-77970573 | MS.gene06798:intron | 45.0% |
| ! | TGGGTTGTCCACGATAGTTT+TGG | + | chr3.3:77969555-77969574 | MS.gene06798:intron | 45.0% |
| ! | TTTGGGATGATCATCAGAGC+AGG | + | chr3.3:77968732-77968751 | MS.gene06798:CDS | 45.0% |
| !! | AACTTGAGAGTGAGGGTGTT+TGG | + | chr3.3:77969768-77969787 | MS.gene06798:CDS | 45.0% |
| !! | ACTTGAGAGTGAGGGTGTTT+GGG | + | chr3.3:77969769-77969788 | MS.gene06798:CDS | 45.0% |
| !!! | GTCCACGATAGTTTTGGAAG+TGG | + | chr3.3:77969561-77969580 | MS.gene06798:intron | 45.0% |
| AAGATGAGGCCCCACTATTG+GGG | - | chr3.3:77968451-77968470 | None:intergenic | 50.0% | |
| ACTTCTCCTTTGTGACGACC+TGG | - | chr3.3:77968956-77968975 | None:intergenic | 50.0% | |
| AGAAGATGAGGCCCCACTAT+TGG | - | chr3.3:77968453-77968472 | None:intergenic | 50.0% | |
| AGCAACATCCTAGCGCTTGT+TGG | + | chr3.3:77968668-77968687 | MS.gene06798:CDS | 50.0% | |
| AGGTTAGAAGAGGGGTGGAT+AGG | + | chr3.3:77969664-77969683 | MS.gene06798:intron | 50.0% | |
| ATTGATGTCTGCATCTGGCC+GGG | - | chr3.3:77968480-77968499 | None:intergenic | 50.0% | |
| CAAGCGCTAGGATGTTGCTA+CGG | - | chr3.3:77968667-77968686 | None:intergenic | 50.0% | |
| CACTGTCCTAATCTCTGGCA+TGG | + | chr3.3:77970668-77970687 | MS.gene06798:CDS | 50.0% | |
| CATTGATGTCTGCATCTGGC+CGG | - | chr3.3:77968481-77968500 | None:intergenic | 50.0% | |
| GAAGATGAGGCCCCACTATT+GGG | - | chr3.3:77968452-77968471 | None:intergenic | 50.0% | |
| GATCATCAGAGCAGGTGCAT+TGG | + | chr3.3:77968740-77968759 | MS.gene06798:CDS | 50.0% | |
| GATGAAGTAGTACAGGCCCT+TGG | - | chr3.3:77969824-77969843 | None:intergenic | 50.0% | |
| GGTTAGAAGAGGGGTGGATA+GGG | + | chr3.3:77969665-77969684 | MS.gene06798:intron | 50.0% | |
| GGTTTATGGTGATCCAGGCT+GGG | + | chr3.3:77970841-77970860 | MS.gene06798:intron | 50.0% | |
| GTCCTAATCTCTGGCATGGA+TGG | + | chr3.3:77970672-77970691 | MS.gene06798:CDS | 50.0% | |
| TCAACTGCAAAGCATGCGTG+AGG | - | chr3.3:77971400-77971419 | None:intergenic | 50.0% | |
| TGCTTCACTCTGACAACGGA+CGG | + | chr3.3:77969040-77969059 | MS.gene06798:CDS | 50.0% | |
| TGGTTTATGGTGATCCAGGC+TGG | + | chr3.3:77970840-77970859 | MS.gene06798:intron | 50.0% | |
| ! | TGATGAATTGGGGTTGGCAC+CGG | - | chr3.3:77969889-77969908 | None:intergenic | 50.0% |
| !! | CTTGAGAGTGAGGGTGTTTG+GGG | + | chr3.3:77969770-77969789 | MS.gene06798:CDS | 50.0% |
| ATACGCCCAACTGCTGTCCA+AGG | + | chr3.3:77969804-77969823 | MS.gene06798:CDS | 55.0% | |
| CACTTGATGCTGCCAACCAC+TGG | - | chr3.3:77969725-77969744 | None:intergenic | 55.0% | |
| CGTGTAGGTTAGAAGAGGGG+TGG | + | chr3.3:77969659-77969678 | MS.gene06798:intron | 55.0% | |
| CTACAGCACCAACAAGCGCT+AGG | - | chr3.3:77968679-77968698 | None:intergenic | 55.0% | |
| CTCTGTCTCCCAATGTCCAG+TGG | + | chr3.3:77969706-77969725 | MS.gene06798:CDS | 55.0% | |
| CTGCAAAGCATGCGTGAGGA+AGG | - | chr3.3:77971396-77971415 | None:intergenic | 55.0% | |
| GAAAGACAGCACAACCCCCT+AGG | - | chr3.3:77968902-77968921 | None:intergenic | 55.0% | |
| GACTACGGTTGCTTAGCTGC+TGG | + | chr3.3:77968542-77968561 | MS.gene06798:CDS | 55.0% | |
| GCTGCCAACCACTGGACATT+GGG | - | chr3.3:77969717-77969736 | None:intergenic | 55.0% | |
| GCTTCACTCTGACAACGGAC+GGG | + | chr3.3:77969041-77969060 | MS.gene06798:CDS | 55.0% | |
| GCTTGTCCAGGTCGTCACAA+AGG | + | chr3.3:77968947-77968966 | MS.gene06798:CDS | 55.0% | |
| GGGCCTCATCTTCTCTTTCC+CGG | + | chr3.3:77968459-77968478 | MS.gene06798:CDS | 55.0% | |
| GTCTCCCAATGTCCAGTGGT+TGG | + | chr3.3:77969710-77969729 | MS.gene06798:CDS | 55.0% | |
| TACGCCCAACTGCTGTCCAA+GGG | + | chr3.3:77969805-77969824 | MS.gene06798:CDS | 55.0% | |
| TGCTGCCAACCACTGGACAT+TGG | - | chr3.3:77969718-77969737 | None:intergenic | 55.0% | |
| TGGCCGGGAAAGAGAAGATG+AGG | - | chr3.3:77968465-77968484 | None:intergenic | 55.0% | |
| TGGGGGAGAGATGTTGCAGA+AGG | + | chr3.3:77971628-77971647 | MS.gene06798:CDS | 55.0% | |
| !! | TTGGGGTTGGCACCGGTATT+TGG | - | chr3.3:77969882-77969901 | None:intergenic | 55.0% |
| ACAGGCCCTTGGACAGCAGT+TGG | - | chr3.3:77969813-77969832 | None:intergenic | 60.0% | |
| CACTCAGCTGACGAGTCAGC+AGG | - | chr3.3:77970714-77970733 | None:intergenic | 60.0% | |
| CAGGCCCTTGGACAGCAGTT+GGG | - | chr3.3:77969812-77969831 | None:intergenic | 60.0% | |
| !! | GAGAGTGAGGGTGTTTGGGG+AGG | + | chr3.3:77969773-77969792 | MS.gene06798:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 77968356 | 77971676 | 77968356 | ID=MS.gene06798 |
| chr3.3 | mRNA | 77968356 | 77971676 | 77968356 | ID=MS.gene06798.t1;Parent=MS.gene06798 |
| chr3.3 | exon | 77968356 | 77969141 | 77968356 | ID=MS.gene06798.t1.exon1;Parent=MS.gene06798.t1 |
| chr3.3 | CDS | 77968356 | 77969141 | 77968356 | ID=cds.MS.gene06798.t1;Parent=MS.gene06798.t1 |
| chr3.3 | exon | 77969666 | 77969924 | 77969666 | ID=MS.gene06798.t1.exon2;Parent=MS.gene06798.t1 |
| chr3.3 | CDS | 77969666 | 77969924 | 77969666 | ID=cds.MS.gene06798.t1;Parent=MS.gene06798.t1 |
| chr3.3 | exon | 77970574 | 77970697 | 77970574 | ID=MS.gene06798.t1.exon3;Parent=MS.gene06798.t1 |
| chr3.3 | CDS | 77970574 | 77970697 | 77970574 | ID=cds.MS.gene06798.t1;Parent=MS.gene06798.t1 |
| chr3.3 | exon | 77971598 | 77971676 | 77971598 | ID=MS.gene06798.t1.exon4;Parent=MS.gene06798.t1 |
| chr3.3 | CDS | 77971598 | 77971676 | 77971598 | ID=cds.MS.gene06798.t1;Parent=MS.gene06798.t1 |
| Gene Sequence |
| Protein sequence |
