Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070685.t1 | XP_003613046.1 | 97.7 | 173 | 4 | 0 | 1 | 173 | 1 | 173 | 2.20E-92 | 348.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070685.t1 | G7JWE3 | 97.7 | 173 | 4 | 0 | 1 | 173 | 1 | 173 | 1.6e-92 | 348.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene070685 | 0.804641 | 1.96E-49 | -1.69E-46 |
| MS.gene049230 | MS.gene070685 | 0.842023 | 3.33E-58 | -1.69E-46 |
| MS.gene049283 | MS.gene070685 | 0.818421 | 1.98E-52 | -1.69E-46 |
| MS.gene049378 | MS.gene070685 | 0.832796 | 7.71E-56 | -1.69E-46 |
| MS.gene049419 | MS.gene070685 | -0.816566 | 5.18E-52 | -1.69E-46 |
| MS.gene049801 | MS.gene070685 | 0.816578 | 5.15E-52 | -1.69E-46 |
| MS.gene049983 | MS.gene070685 | 0.833628 | 4.78E-56 | -1.69E-46 |
| MS.gene050105 | MS.gene070685 | 0.879454 | 1.23E-69 | -1.69E-46 |
| MS.gene050605 | MS.gene070685 | 0.830546 | 2.76E-55 | -1.69E-46 |
| MS.gene050654 | MS.gene070685 | 0.83624 | 1.05E-56 | -1.69E-46 |
| MS.gene050737 | MS.gene070685 | 0.80399 | 2.68E-49 | -1.69E-46 |
| MS.gene050826 | MS.gene070685 | 0.805683 | 1.19E-49 | -1.69E-46 |
| MS.gene050941 | MS.gene070685 | 0.816294 | 5.96E-52 | -1.69E-46 |
| MS.gene051122 | MS.gene070685 | 0.876689 | 1.14E-68 | -1.69E-46 |
| MS.gene051210 | MS.gene070685 | 0.800836 | 1.20E-48 | -1.69E-46 |
| MS.gene051368 | MS.gene070685 | 0.826507 | 2.61E-54 | -1.69E-46 |
| MS.gene051924 | MS.gene070685 | -0.822402 | 2.41E-53 | -1.69E-46 |
| MS.gene051926 | MS.gene070685 | -0.80939 | 1.94E-50 | -1.69E-46 |
| MS.gene05216 | MS.gene070685 | 0.843994 | 9.95E-59 | -1.69E-46 |
| MS.gene052333 | MS.gene070685 | 0.815327 | 9.79E-52 | -1.69E-46 |
| MS.gene052586 | MS.gene070685 | 0.804476 | 2.12E-49 | -1.69E-46 |
| MS.gene052674 | MS.gene070685 | 0.847362 | 1.21E-59 | -1.69E-46 |
| MS.gene052675 | MS.gene070685 | 0.840247 | 9.75E-58 | -1.69E-46 |
| MS.gene052677 | MS.gene070685 | 0.845906 | 3.03E-59 | -1.69E-46 |
| MS.gene052954 | MS.gene070685 | 0.854429 | 1.24E-61 | -1.69E-46 |
| MS.gene053166 | MS.gene070685 | 0.804409 | 2.19E-49 | -1.69E-46 |
| MS.gene053216 | MS.gene070685 | 0.801995 | 6.92E-49 | -1.69E-46 |
| MS.gene05350 | MS.gene070685 | 0.809492 | 1.84E-50 | -1.69E-46 |
| MS.gene054379 | MS.gene070685 | 0.800577 | 1.35E-48 | -1.69E-46 |
| MS.gene054479 | MS.gene070685 | 0.872265 | 3.63E-67 | -1.69E-46 |
| MS.gene05510 | MS.gene070685 | 0.804583 | 2.01E-49 | -1.69E-46 |
| MS.gene055623 | MS.gene070685 | 0.810368 | 1.19E-50 | -1.69E-46 |
| MS.gene055701 | MS.gene070685 | 0.84267 | 2.24E-58 | -1.69E-46 |
| MS.gene055864 | MS.gene070685 | 0.8021 | 6.59E-49 | -1.69E-46 |
| MS.gene056045 | MS.gene070685 | 0.82122 | 4.53E-53 | -1.69E-46 |
| MS.gene056480 | MS.gene070685 | 0.858803 | 6.41E-63 | -1.69E-46 |
| MS.gene056506 | MS.gene070685 | 0.825625 | 4.23E-54 | -1.69E-46 |
| MS.gene056776 | MS.gene070685 | 0.802828 | 4.66E-49 | -1.69E-46 |
| MS.gene056779 | MS.gene070685 | 0.830497 | 2.84E-55 | -1.69E-46 |
| MS.gene056849 | MS.gene070685 | 0.812621 | 3.87E-51 | -1.69E-46 |
| MS.gene056873 | MS.gene070685 | 0.81718 | 3.77E-52 | -1.69E-46 |
| MS.gene057026 | MS.gene070685 | 0.80809 | 3.67E-50 | -1.69E-46 |
| MS.gene057156 | MS.gene070685 | -0.818748 | 1.67E-52 | -1.69E-46 |
| MS.gene057208 | MS.gene070685 | 0.82085 | 5.52E-53 | -1.69E-46 |
| MS.gene05761 | MS.gene070685 | 0.80447 | 2.13E-49 | -1.69E-46 |
| MS.gene058008 | MS.gene070685 | 0.802459 | 5.55E-49 | -1.69E-46 |
| MS.gene058081 | MS.gene070685 | 0.831383 | 1.72E-55 | -1.69E-46 |
| MS.gene058146 | MS.gene070685 | 0.811258 | 7.66E-51 | -1.69E-46 |
| MS.gene058223 | MS.gene070685 | -0.850682 | 1.45E-60 | -1.69E-46 |
| MS.gene058427 | MS.gene070685 | 0.801988 | 6.94E-49 | -1.69E-46 |
| MS.gene058429 | MS.gene070685 | 0.808353 | 3.23E-50 | -1.69E-46 |
| MS.gene058595 | MS.gene070685 | 0.817522 | 3.16E-52 | -1.69E-46 |
| MS.gene058979 | MS.gene070685 | 0.807843 | 4.15E-50 | -1.69E-46 |
| MS.gene059952 | MS.gene070685 | 0.814266 | 1.68E-51 | -1.69E-46 |
| MS.gene060011 | MS.gene070685 | 0.827612 | 1.42E-54 | -1.69E-46 |
| MS.gene060296 | MS.gene070685 | 0.803005 | 4.28E-49 | -1.69E-46 |
| MS.gene060322 | MS.gene070685 | 0.800721 | 1.26E-48 | -1.69E-46 |
| MS.gene06052 | MS.gene070685 | 0.832142 | 1.12E-55 | -1.69E-46 |
| MS.gene060683 | MS.gene070685 | 0.822923 | 1.83E-53 | -1.69E-46 |
| MS.gene060685 | MS.gene070685 | 0.827019 | 1.97E-54 | -1.69E-46 |
| MS.gene060777 | MS.gene070685 | 0.802836 | 4.64E-49 | -1.69E-46 |
| MS.gene060802 | MS.gene070685 | 0.808898 | 2.47E-50 | -1.69E-46 |
| MS.gene060803 | MS.gene070685 | 0.800896 | 1.16E-48 | -1.69E-46 |
| MS.gene060840 | MS.gene070685 | 0.810611 | 1.06E-50 | -1.69E-46 |
| MS.gene060850 | MS.gene070685 | 0.833187 | 6.16E-56 | -1.69E-46 |
| MS.gene060851 | MS.gene070685 | 0.858326 | 8.89E-63 | -1.69E-46 |
| MS.gene060852 | MS.gene070685 | 0.857911 | 1.18E-62 | -1.69E-46 |
| MS.gene060932 | MS.gene070685 | 0.82224 | 2.63E-53 | -1.69E-46 |
| MS.gene060935 | MS.gene070685 | 0.800005 | 1.77E-48 | -1.69E-46 |
| MS.gene060937 | MS.gene070685 | 0.801318 | 9.53E-49 | -1.69E-46 |
| MS.gene060998 | MS.gene070685 | 0.808642 | 2.80E-50 | -1.69E-46 |
| MS.gene06121 | MS.gene070685 | 0.837828 | 4.13E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070685.t1 | MTR_5g032070 | 97.688 | 173 | 4 | 0 | 1 | 173 | 1 | 173 | 4.77e-123 | 343 |
| MS.gene070685.t1 | MTR_8g471140 | 59.669 | 181 | 56 | 7 | 3 | 173 | 1 | 174 | 2.63e-49 | 157 |
| MS.gene070685.t1 | MTR_5g066330 | 50.847 | 177 | 73 | 8 | 1 | 170 | 1 | 170 | 2.38e-46 | 149 |
| MS.gene070685.t1 | MTR_8g471140 | 57.317 | 164 | 53 | 7 | 3 | 156 | 1 | 157 | 4.32e-38 | 128 |
| MS.gene070685.t1 | MTR_3g100200 | 39.326 | 178 | 94 | 6 | 1 | 170 | 1 | 172 | 1.04e-26 | 99.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070685.t1 | AT4G38060 | 44.118 | 136 | 57 | 4 | 36 | 171 | 20 | 136 | 2.31e-25 | 95.1 |
| MS.gene070685.t1 | AT4G38060 | 44.118 | 136 | 57 | 4 | 36 | 171 | 20 | 136 | 2.31e-25 | 95.1 |
| MS.gene070685.t1 | AT4G38060 | 44.118 | 136 | 57 | 4 | 36 | 171 | 20 | 136 | 2.31e-25 | 95.1 |
| MS.gene070685.t1 | AT4G38060 | 40.323 | 124 | 55 | 4 | 36 | 159 | 20 | 124 | 3.92e-17 | 73.6 |
| MS.gene070685.t1 | AT5G65480 | 44.048 | 84 | 28 | 5 | 89 | 168 | 82 | 150 | 7.57e-12 | 60.5 |
Find 34 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGACACGTTTGTCTTGT+TGG | 0.293279 | 5.3:-20688166 | MS.gene070685:CDS |
| GAGAAAGAGCCTATTGTTAA+TGG | 0.294492 | 5.3:-20688125 | MS.gene070685:CDS |
| GATGACTCAGATTGGTCTAT+TGG | 0.319310 | 5.3:-20687906 | MS.gene070685:CDS |
| TTGGTTATGGAGAGGTAGTA+AGG | 0.362202 | 5.3:-20688147 | MS.gene070685:CDS |
| CACGTTTGTCTTGTTGGTTA+TGG | 0.369107 | 5.3:-20688160 | MS.gene070685:CDS |
| GATGGATTTCCATTAACAAT+AGG | 0.374602 | 5.3:+20688116 | None:intergenic |
| CAAATAATCAAAGGAAGGTT+AGG | 0.383783 | 5.3:-20688031 | MS.gene070685:CDS |
| GGTGGTGGTGGTTGTTTGTC+AGG | 0.396455 | 5.3:-20687939 | MS.gene070685:CDS |
| TTACCAGAAGAAAATTCATT+TGG | 0.409882 | 5.3:+20687729 | None:intergenic |
| TTAGGAAGAAGTGGCAGAGT+AGG | 0.411049 | 5.3:-20688013 | MS.gene070685:CDS |
| ATGACTCAGATTGGTCTATT+GGG | 0.420028 | 5.3:-20687905 | MS.gene070685:CDS |
| TTTGAAGTTTCCTTTGATGA+AGG | 0.436540 | 5.3:-20688057 | MS.gene070685:CDS |
| TAGGAAGAAGTGGCAGAGTA+GGG | 0.441023 | 5.3:-20688012 | MS.gene070685:CDS |
| CCTTCAACTTCCTTGCAACC+TGG | 0.459031 | 5.3:+20687792 | None:intergenic |
| AGTGGCAGAGTAGGGAAGAG+AGG | 0.465355 | 5.3:-20688004 | MS.gene070685:CDS |
| ATGGAAATCCATCTTCTGAA+TGG | 0.490855 | 5.3:-20688106 | MS.gene070685:CDS |
| CCAGGTTGCAAGGAAGTTGA+AGG | 0.512670 | 5.3:-20687792 | MS.gene070685:CDS |
| GTATCATCTGATGGTGGTGG+TGG | 0.523059 | 5.3:-20687951 | MS.gene070685:CDS |
| TTGGTTCCTTGTTATAGACC+AGG | 0.523146 | 5.3:-20687810 | MS.gene070685:CDS |
| CTGAATCTGATGACTCAGAT+TGG | 0.527691 | 5.3:-20687914 | MS.gene070685:CDS |
| TTGAAGTTTCCTTTGATGAA+GGG | 0.535589 | 5.3:-20688056 | MS.gene070685:CDS |
| TGCAGCTGGAAACAATTACA+TGG | 0.536763 | 5.3:-20686478 | MS.gene070685:intron |
| ATTGGGTGGTTAGAGCCTCA+TGG | 0.551380 | 5.3:-20687888 | MS.gene070685:CDS |
| TTATTTGTTCCCTTCATCAA+AGG | 0.553314 | 5.3:+20688047 | None:intergenic |
| AAAGGAAGGTTAGGAAGAAG+TGG | 0.568851 | 5.3:-20688022 | MS.gene070685:CDS |
| TTAGTATCATCTGATGGTGG+TGG | 0.573261 | 5.3:-20687954 | MS.gene070685:CDS |
| TTGTTATAGACCAGGTTGCA+AGG | 0.574059 | 5.3:-20687802 | MS.gene070685:CDS |
| GGGAACAAATAATCAAAGGA+AGG | 0.591584 | 5.3:-20688036 | MS.gene070685:CDS |
| GAAACAATTACATGGAACAA+TGG | 0.593678 | 5.3:-20686470 | MS.gene070685:CDS |
| TGAAGGGAACAAATAATCAA+AGG | 0.593937 | 5.3:-20688040 | MS.gene070685:CDS |
| TTGTCTTGTTGGTTATGGAG+AGG | 0.611884 | 5.3:-20688155 | MS.gene070685:CDS |
| ACTCAGATTGGTCTATTGGG+TGG | 0.613034 | 5.3:-20687902 | MS.gene070685:CDS |
| TTGCAACCTGGTCTATAACA+AGG | 0.667827 | 5.3:+20687804 | None:intergenic |
| CTCTGAAAATCAGAACCATG+AGG | 0.713992 | 5.3:+20687873 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTGTTTTTTTTTATTCT+TGG | - | chr5.3:20687187-20687206 | MS.gene070685:intron | 10.0% |
| !! | AATAGATATAAAAGATAAAC+TGG | - | chr5.3:20687724-20687743 | MS.gene070685:intron | 15.0% |
| !!! | ATATCTATTTCTTATTTTGA+AGG | + | chr5.3:20687713-20687732 | None:intergenic | 15.0% |
| !!! | TATCTATTTCTTATTTTGAA+GGG | + | chr5.3:20687712-20687731 | None:intergenic | 15.0% |
| !!! | TCATATTTCTTTGTATATTT+TGG | - | chr5.3:20687468-20687487 | MS.gene070685:intron | 15.0% |
| !! | ATCATTTCTCAACAATATAA+TGG | + | chr5.3:20687351-20687370 | None:intergenic | 20.0% |
| !! | CTTTGTACAAATCAAAATTA+GGG | - | chr5.3:20688000-20688019 | MS.gene070685:CDS | 20.0% |
| !! | TCATTTCTCAACAATATAAT+GGG | + | chr5.3:20687350-20687369 | None:intergenic | 20.0% |
| !! | TCTTTGTACAAATCAAAATT+AGG | - | chr5.3:20687999-20688018 | MS.gene070685:CDS | 20.0% |
| !!! | ACTGTTTTTTTTCTTGTTTA+TGG | - | chr5.3:20687819-20687838 | MS.gene070685:CDS | 20.0% |
| !!! | ATTTTGCTATATTTGTAGTT+TGG | - | chr5.3:20687079-20687098 | MS.gene070685:intron | 20.0% |
| ! | AACAAACAGCTCAATTAAAA+TGG | + | chr5.3:20687980-20687999 | None:intergenic | 25.0% |
| ! | AAGATCTATTAATACTACTC+AGG | + | chr5.3:20687667-20687686 | None:intergenic | 25.0% |
| ! | AATGTTGAATATAAGCTCTT+TGG | - | chr5.3:20687616-20687635 | MS.gene070685:intron | 25.0% |
| ! | ATTTCTCAACAATATAATGG+GGG | + | chr5.3:20687348-20687367 | None:intergenic | 25.0% |
| ! | CAAATTAAGTTCAATTCTCT+TGG | + | chr5.3:20687920-20687939 | None:intergenic | 25.0% |
| ! | CATTTCTCAACAATATAATG+GGG | + | chr5.3:20687349-20687368 | None:intergenic | 25.0% |
| ! | GCTTAAATCATCTTATATGA+TGG | - | chr5.3:20687893-20687912 | MS.gene070685:CDS | 25.0% |
| ! | TATTCCAAAAACAATAAGCA+TGG | + | chr5.3:20688107-20688126 | None:intergenic | 25.0% |
| ! | TCCCCTAAAAAAAAAATCTT+TGG | - | chr5.3:20687641-20687660 | MS.gene070685:intron | 25.0% |
| ! | TGAATGTATCAAATTAGTAC+AGG | + | chr5.3:20688071-20688090 | None:intergenic | 25.0% |
| ! | TTACCAGAAGAAAATTCATT+TGG | + | chr5.3:20686890-20686909 | None:intergenic | 25.0% |
| !! | AATTTTCTTCTGGTAAGATT+TGG | - | chr5.3:20686894-20686913 | MS.gene070685:intron | 25.0% |
| !! | AGTGGTAATGTAATTAATGA+TGG | - | chr5.3:20688025-20688044 | MS.gene070685:CDS | 25.0% |
| !! | TTTGTCATGTATTATGCTTT+TGG | + | chr5.3:20687157-20687176 | None:intergenic | 25.0% |
| !!! | AAAGATTTTTTTTTTAGGGG+AGG | + | chr5.3:20687642-20687661 | None:intergenic | 25.0% |
| !!! | AGGCCAAAGATTTTTTTTTT+AGG | + | chr5.3:20687647-20687666 | None:intergenic | 25.0% |
| !!! | GCCAAAGATTTTTTTTTTAG+GGG | + | chr5.3:20687645-20687664 | None:intergenic | 25.0% |
| !!! | GGCCAAAGATTTTTTTTTTA+GGG | + | chr5.3:20687646-20687665 | None:intergenic | 25.0% |
| AAAACAATAAGCATGGATAC+AGG | + | chr5.3:20688100-20688119 | None:intergenic | 30.0% | |
| ATATACTTCAAACTGCAAGT+TGG | - | chr5.3:20687948-20687967 | MS.gene070685:CDS | 30.0% | |
| CAAATAATCAAAGGAAGGTT+AGG | - | chr5.3:20686585-20686604 | MS.gene070685:intron | 30.0% | |
| CAAATCAAAATTAGGGAAAG+TGG | - | chr5.3:20688007-20688026 | MS.gene070685:CDS | 30.0% | |
| GAAACAATTACATGGAACAA+TGG | - | chr5.3:20688146-20688165 | MS.gene070685:CDS | 30.0% | |
| GTATAAGTATCTGTGCAAAT+TGG | + | chr5.3:20687564-20687583 | None:intergenic | 30.0% | |
| TACAGGAAATAGAGTTAAGA+GGG | + | chr5.3:20688054-20688073 | None:intergenic | 30.0% | |
| TATACTTCAAACTGCAAGTT+GGG | - | chr5.3:20687949-20687968 | MS.gene070685:CDS | 30.0% | |
| TGAAGGGAACAAATAATCAA+AGG | - | chr5.3:20686576-20686595 | MS.gene070685:intron | 30.0% | |
| TTATTTGTTCCCTTCATCAA+AGG | + | chr5.3:20686572-20686591 | None:intergenic | 30.0% | |
| TTCAAATGCATCAATCTACT+AGG | - | chr5.3:20687217-20687236 | MS.gene070685:intron | 30.0% | |
| TTGAAGTTTCCTTTGATGAA+GGG | - | chr5.3:20686560-20686579 | MS.gene070685:intron | 30.0% | |
| ! | CTACCAAATGAATTTTCTTC+TGG | - | chr5.3:20686884-20686903 | MS.gene070685:intron | 30.0% |
| ! | GATGGATTTCCATTAACAAT+AGG | + | chr5.3:20686503-20686522 | None:intergenic | 30.0% |
| ! | GTATCCATGCTTATTGTTTT+TGG | - | chr5.3:20688100-20688119 | MS.gene070685:CDS | 30.0% |
| ! | TTTGAAGTTTCCTTTGATGA+AGG | - | chr5.3:20686559-20686578 | MS.gene070685:intron | 30.0% |
| !! | TCTACTAGGTTTTTGTTTCA+TGG | - | chr5.3:20687231-20687250 | MS.gene070685:intron | 30.0% |
| !!! | GTTGTTTTAGTATCATCTGA+TGG | - | chr5.3:20686656-20686675 | MS.gene070685:intron | 30.0% |
| !!! | TGATAGTAGTTTTGCTGTTT+TGG | - | chr5.3:20686787-20686806 | MS.gene070685:intron | 30.0% |
| !!! | TTCTAGTCTTGTGTGTTTTT+TGG | - | chr5.3:20687322-20687341 | MS.gene070685:intron | 30.0% |
| ACTTACTCTCTCTATTGCTT+TGG | - | chr5.3:20687430-20687449 | MS.gene070685:intron | 35.0% | |
| ATGGAAATCCATCTTCTGAA+TGG | - | chr5.3:20686510-20686529 | MS.gene070685:intron | 35.0% | |
| CTGTAAGTGCAATGATGATT+AGG | - | chr5.3:20687113-20687132 | MS.gene070685:intron | 35.0% | |
| GAAAAACTCCATTCAGAAGA+TGG | + | chr5.3:20686521-20686540 | None:intergenic | 35.0% | |
| GAGAAAGAGCCTATTGTTAA+TGG | - | chr5.3:20686491-20686510 | MS.gene070685:intron | 35.0% | |
| GGGAACAAATAATCAAAGGA+AGG | - | chr5.3:20686580-20686599 | MS.gene070685:intron | 35.0% | |
| GTACAGGAAATAGAGTTAAG+AGG | + | chr5.3:20688055-20688074 | None:intergenic | 35.0% | |
| GTGTCTGTCATTATCATCAT+GGG | - | chr5.3:20687043-20687062 | MS.gene070685:intron | 35.0% | |
| TGAAACTGTGGATACTATAG+AGG | - | chr5.3:20687292-20687311 | MS.gene070685:intron | 35.0% | |
| TGACAACACTAACAACATAG+AGG | + | chr5.3:20687538-20687557 | None:intergenic | 35.0% | |
| TGTAACTATGCATGAAACTG+TGG | - | chr5.3:20687280-20687299 | MS.gene070685:intron | 35.0% | |
| TGTGTCTGTCATTATCATCA+TGG | - | chr5.3:20687042-20687061 | MS.gene070685:intron | 35.0% | |
| TTGCACAGATACTTATACTC+TGG | - | chr5.3:20687566-20687585 | MS.gene070685:intron | 35.0% | |
| TTTGAAGGGAACAAATTGCA+GGG | + | chr5.3:20687698-20687717 | None:intergenic | 35.0% | |
| TTTGGATTTAGCTACCCAAA+AGG | + | chr5.3:20687139-20687158 | None:intergenic | 35.0% | |
| ! | ATACTGATTGAATTTGCAGC+TGG | - | chr5.3:20688124-20688143 | MS.gene070685:CDS | 35.0% |
| ! | CAATGATGATTAGGCCTTTT+GGG | - | chr5.3:20687122-20687141 | MS.gene070685:intron | 35.0% |
| ! | CATTTTTGTTCACAGCTTGT+GGG | + | chr5.3:20687498-20687517 | None:intergenic | 35.0% |
| !! | ATGACTCAGATTGGTCTATT+GGG | - | chr5.3:20686711-20686730 | MS.gene070685:intron | 35.0% |
| !! | GTTTTAGTATCATCTGATGG+TGG | - | chr5.3:20686659-20686678 | MS.gene070685:intron | 35.0% |
| !! | TTTTGAAGGGAACAAATTGC+AGG | + | chr5.3:20687699-20687718 | None:intergenic | 35.0% |
| AAAGGAAGGTTAGGAAGAAG+TGG | - | chr5.3:20686594-20686613 | MS.gene070685:intron | 40.0% | |
| CCACAAGCTGTGAACAAAAA+TGG | - | chr5.3:20687496-20687515 | MS.gene070685:intron | 40.0% | |
| CTGAATCTGATGACTCAGAT+TGG | - | chr5.3:20686702-20686721 | MS.gene070685:intron | 40.0% | |
| CTTTGACACGTTTGTCTTGT+TGG | - | chr5.3:20686450-20686469 | MS.gene070685:CDS | 40.0% | |
| GACACACACATTTCTTCATC+AGG | + | chr5.3:20687028-20687047 | None:intergenic | 40.0% | |
| TGCAGCTGGAAACAATTACA+TGG | - | chr5.3:20688138-20688157 | MS.gene070685:CDS | 40.0% | |
| TTGCAACCTGGTCTATAACA+AGG | + | chr5.3:20686815-20686834 | None:intergenic | 40.0% | |
| TTGGTTATGGAGAGGTAGTA+AGG | - | chr5.3:20686469-20686488 | MS.gene070685:CDS | 40.0% | |
| TTGTTATAGACCAGGTTGCA+AGG | - | chr5.3:20686814-20686833 | MS.gene070685:intron | 40.0% | |
| ! | CACGTTTGTCTTGTTGGTTA+TGG | - | chr5.3:20686456-20686475 | MS.gene070685:CDS | 40.0% |
| ! | CTCTGAAAATCAGAACCATG+AGG | + | chr5.3:20686746-20686765 | None:intergenic | 40.0% |
| ! | GCAATGATGATTAGGCCTTT+TGG | - | chr5.3:20687121-20687140 | MS.gene070685:intron | 40.0% |
| ! | TTGGTTCCTTGTTATAGACC+AGG | - | chr5.3:20686806-20686825 | MS.gene070685:intron | 40.0% |
| ! | TTGTCTTGTTGGTTATGGAG+AGG | - | chr5.3:20686461-20686480 | MS.gene070685:CDS | 40.0% |
| !! | CCATTTTTGTTCACAGCTTG+TGG | + | chr5.3:20687499-20687518 | None:intergenic | 40.0% |
| !! | GATGACTCAGATTGGTCTAT+TGG | - | chr5.3:20686710-20686729 | MS.gene070685:intron | 40.0% |
| !! | TTAGTATCATCTGATGGTGG+TGG | - | chr5.3:20686662-20686681 | MS.gene070685:intron | 40.0% |
| TAGGAAGAAGTGGCAGAGTA+GGG | - | chr5.3:20686604-20686623 | MS.gene070685:intron | 45.0% | |
| TTAGGAAGAAGTGGCAGAGT+AGG | - | chr5.3:20686603-20686622 | MS.gene070685:intron | 45.0% | |
| !! | ACTCAGATTGGTCTATTGGG+TGG | - | chr5.3:20686714-20686733 | MS.gene070685:intron | 45.0% |
| ATTGGGTGGTTAGAGCCTCA+TGG | - | chr5.3:20686728-20686747 | MS.gene070685:intron | 50.0% | |
| CCAGGTTGCAAGGAAGTTGA+AGG | - | chr5.3:20686824-20686843 | MS.gene070685:intron | 50.0% | |
| CCTTCAACTTCCTTGCAACC+TGG | + | chr5.3:20686827-20686846 | None:intergenic | 50.0% | |
| !! | GTATCATCTGATGGTGGTGG+TGG | - | chr5.3:20686665-20686684 | MS.gene070685:intron | 50.0% |
| AGTGGCAGAGTAGGGAAGAG+AGG | - | chr5.3:20686612-20686631 | MS.gene070685:intron | 55.0% | |
| !! | GGTGGTGGTGGTTGTTTGTC+AGG | - | chr5.3:20686677-20686696 | MS.gene070685:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 20686440 | 20688198 | 20686440 | ID=MS.gene070685 |
| chr5.3 | mRNA | 20686440 | 20688198 | 20686440 | ID=MS.gene070685.t1;Parent=MS.gene070685 |
| chr5.3 | exon | 20687733 | 20688198 | 20687733 | ID=MS.gene070685.t1.exon1;Parent=MS.gene070685.t1 |
| chr5.3 | CDS | 20687733 | 20688198 | 20687733 | ID=cds.MS.gene070685.t1;Parent=MS.gene070685.t1 |
| chr5.3 | exon | 20686440 | 20686495 | 20686440 | ID=MS.gene070685.t1.exon2;Parent=MS.gene070685.t1 |
| chr5.3 | CDS | 20686440 | 20686495 | 20686440 | ID=cds.MS.gene070685.t1;Parent=MS.gene070685.t1 |
| Gene Sequence |
| Protein sequence |
