AlfalfaGEDB | MS.gene072555

M. sativa cultivar XinJiangDaYe / MS.gene072555

KEGG: K07953
GO: GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0015031 GO:0015833 GO:0017076 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0033036 GO:0035639 GO:0036094 GO:0042886 GO:0043167 GO:0043168 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0071702 GO:0071705 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00025.24

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072555.t1	XP_013450457.1	99.5	193	1	0	1	193	1	193	3.90E-106	394

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072555.t1	O04834	94.8	193	10	0	1	193	1	193	9.7e-106	384.0

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072555.t1	A0A072UFB5	99.5	193	1	0	1	193	1	193	2.8e-106	394.0

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049255	MS.gene072555	0.805502	1.29E-49	-1.69E-46
MS.gene049411	MS.gene072555	0.812575	3.96E-51	-1.69E-46
MS.gene049680	MS.gene072555	0.830617	2.66E-55	-1.69E-46
MS.gene050277	MS.gene072555	0.800274	1.56E-48	-1.69E-46
MS.gene05029	MS.gene072555	0.832203	1.08E-55	-1.69E-46
MS.gene050320	MS.gene072555	0.815434	9.26E-52	-1.69E-46
MS.gene050437	MS.gene072555	0.87953	1.16E-69	-1.69E-46
MS.gene050752	MS.gene072555	0.989125	8.54E-177	-1.69E-46
MS.gene050838	MS.gene072555	0.849691	2.75E-60	-1.69E-46
MS.gene050955	MS.gene072555	0.983578	3.98E-158	-1.69E-46
MS.gene051003	MS.gene072555	0.899662	1.59E-77	-1.69E-46
MS.gene051234	MS.gene072555	0.883386	4.69E-71	-1.69E-46
MS.gene051241	MS.gene072555	0.809596	1.75E-50	-1.69E-46
MS.gene051343	MS.gene072555	0.843065	1.76E-58	-1.69E-46
MS.gene05134	MS.gene072555	0.815864	7.43E-52	-1.69E-46
MS.gene051746	MS.gene072555	0.815209	1.04E-51	-1.69E-46
MS.gene051748	MS.gene072555	0.821321	4.30E-53	-1.69E-46
MS.gene051756	MS.gene072555	0.817796	2.74E-52	-1.69E-46
MS.gene051903	MS.gene072555	0.856055	4.17E-62	-1.69E-46
MS.gene051975	MS.gene072555	0.821134	4.74E-53	-1.69E-46
MS.gene052072	MS.gene072555	0.821078	4.89E-53	-1.69E-46
MS.gene052335	MS.gene072555	0.824633	7.26E-54	-1.69E-46
MS.gene052479	MS.gene072555	0.838652	2.53E-57	-1.69E-46
MS.gene052947	MS.gene072555	0.845894	3.05E-59	-1.69E-46
MS.gene053058	MS.gene072555	0.829994	3.77E-55	-1.69E-46
MS.gene053109	MS.gene072555	0.816331	5.84E-52	-1.69E-46
MS.gene053590	MS.gene072555	0.8009	1.16E-48	-1.69E-46
MS.gene053952	MS.gene072555	0.820849	5.52E-53	-1.69E-46
MS.gene054004	MS.gene072555	0.827032	1.96E-54	-1.69E-46
MS.gene054005	MS.gene072555	0.803188	3.93E-49	-1.69E-46
MS.gene054403	MS.gene072555	0.988126	8.23E-173	-1.69E-46
MS.gene05469	MS.gene072555	0.829298	5.57E-55	-1.69E-46
MS.gene055162	MS.gene072555	0.800011	1.76E-48	-1.69E-46
MS.gene055555	MS.gene072555	0.804812	1.80E-49	-1.69E-46
MS.gene056699	MS.gene072555	0.802404	5.70E-49	-1.69E-46
MS.gene056787	MS.gene072555	0.816837	4.50E-52	-1.69E-46
MS.gene056986	MS.gene072555	0.820768	5.76E-53	-1.69E-46
MS.gene057102	MS.gene072555	0.81052	1.11E-50	-1.69E-46
MS.gene057234	MS.gene072555	0.825754	3.94E-54	-1.69E-46
MS.gene057694	MS.gene072555	0.810841	9.43E-51	-1.69E-46
MS.gene057705	MS.gene072555	0.853811	1.87E-61	-1.69E-46
MS.gene05781	MS.gene072555	0.822906	1.84E-53	-1.69E-46
MS.gene057999	MS.gene072555	0.833376	5.53E-56	-1.69E-46
MS.gene058238	MS.gene072555	0.806877	6.64E-50	-1.69E-46
MS.gene058261	MS.gene072555	0.805423	1.34E-49	-1.69E-46
MS.gene059146	MS.gene072555	0.834379	3.10E-56	-1.69E-46
MS.gene059227	MS.gene072555	0.829886	4.00E-55	-1.69E-46
MS.gene06011	MS.gene072555	0.827213	1.77E-54	-1.69E-46
MS.gene060763	MS.gene072555	0.802242	6.16E-49	-1.69E-46
MS.gene06118	MS.gene072555	0.828919	6.88E-55	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072555.t1	MTR_7g112090	99.482	193	1	0	1	193	1	193	4.70e-143	396
MS.gene072555.t1	MTR_2g034640	93.264	193	13	0	1	193	1	193	1.45e-137	382
MS.gene072555.t1	MTR_4g121860	89.637	193	20	0	1	193	1	193	1.15e-133	372
MS.gene072555.t1	MTR_4g128910	33.523	176	105	1	18	193	15	178	6.39e-28	103
MS.gene072555.t1	MTR_5g016540	32.203	177	104	2	18	192	15	177	2.46e-25	97.1
MS.gene072555.t1	MTR_6g005820	31.073	177	106	2	18	192	15	177	4.83e-24	93.6
MS.gene072555.t1	MTR_5g034130	31.073	177	106	2	18	192	15	177	5.15e-24	93.6
MS.gene072555.t1	MTR_5g034125	31.073	177	106	2	18	192	15	177	5.15e-24	93.6
MS.gene072555.t1	MTR_7g109960	31.073	177	106	2	18	192	15	177	5.37e-24	93.6
MS.gene072555.t1	MTR_1g086480	31.073	177	106	2	18	192	15	177	5.37e-24	93.6
MS.gene072555.t1	MTR_1g076550	35.088	171	99	2	19	189	16	174	1.46e-23	92.4
MS.gene072555.t1	MTR_4g026950	37.778	135	77	2	22	152	2	133	3.21e-23	91.3
MS.gene072555.t1	MTR_2g022200	37.584	149	81	3	15	151	7	155	3.54e-23	92.0
MS.gene072555.t1	MTR_8g077540	32.164	171	105	1	22	192	18	177	3.54e-23	91.7
MS.gene072555.t1	MTR_5g007810	29.319	191	115	3	3	193	8	178	4.15e-23	91.7
MS.gene072555.t1	MTR_8g077540	32.164	171	105	1	22	192	44	203	9.11e-23	91.3
MS.gene072555.t1	MTR_4g077640	29.319	191	115	3	3	193	8	178	1.43e-22	90.1
MS.gene072555.t1	MTR_5g007820	34.848	132	82	2	20	148	17	147	2.12e-22	89.7
MS.gene072555.t1	MTR_5g015370	36.601	153	95	2	1	152	1	152	2.45e-22	89.4
MS.gene072555.t1	MTR_5g078090	36.296	135	85	1	18	151	17	151	5.98e-22	88.2
MS.gene072555.t1	MTR_5g098820	85.000	40	6	0	39	78	1	40	1.58e-18	78.2
MS.gene072555.t1	MTR_5g098820	82.857	35	6	0	44	78	69	103	1.07e-14	68.2
MS.gene072555.t1	MTR_8g077540	36.458	96	61	0	22	117	18	113	4.09e-16	71.6
MS.gene072555.t1	MTR_5g007840	32.283	127	74	2	20	146	17	131	1.69e-15	72.0

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene072555.t1	AT4G02080	94.819	193	10	0	1	193	1	193	5.24e-139	386
MS.gene072555.t1	AT3G62560	93.750	192	12	0	1	192	1	192	1.61e-136	379
MS.gene072555.t1	AT1G56330	91.667	192	16	0	1	192	1	192	1.01e-133	372
MS.gene072555.t1	AT1G09180	87.047	193	25	0	1	193	1	193	6.08e-127	355
MS.gene072555.t1	AT1G02620	87.387	111	14	0	83	193	12	122	8.84e-71	211
MS.gene072555.t1	AT2G24765	34.091	176	104	1	18	193	15	178	1.13e-27	103
MS.gene072555.t1	AT3G49870	38.562	153	92	2	1	152	1	152	3.95e-26	99.4
MS.gene072555.t1	AT5G67560	36.424	151	90	2	3	152	7	152	5.03e-25	96.3
MS.gene072555.t1	AT3G49870	40.310	129	76	1	25	152	5	133	1.54e-24	94.7
MS.gene072555.t1	AT2G47170	31.016	187	113	2	8	192	5	177	2.04e-24	94.7
MS.gene072555.t1	AT2G47170	31.016	187	113	2	8	192	5	177	2.04e-24	94.7
MS.gene072555.t1	AT2G47170	31.016	187	113	2	8	192	5	177	2.04e-24	94.7
MS.gene072555.t1	AT3G22950	34.483	174	102	2	19	192	16	177	2.21e-24	94.7
MS.gene072555.t1	AT3G22950	34.483	174	102	2	19	192	16	177	2.21e-24	94.7
MS.gene072555.t1	AT3G62290	31.016	187	113	2	8	192	5	177	2.87e-24	94.4
MS.gene072555.t1	AT3G62290	31.016	187	113	2	8	192	5	177	2.87e-24	94.4
MS.gene072555.t1	AT3G62290	31.016	187	113	2	8	192	5	177	2.87e-24	94.4
MS.gene072555.t1	AT1G10630	31.073	177	106	2	18	192	15	177	5.34e-24	93.6
MS.gene072555.t1	AT1G10630	31.073	177	106	2	18	192	15	177	5.34e-24	93.6
MS.gene072555.t1	AT5G14670	31.073	177	106	2	18	192	15	177	5.39e-24	93.6
MS.gene072555.t1	AT5G14670	31.073	177	106	2	18	192	15	177	5.39e-24	93.6
MS.gene072555.t1	AT1G70490	31.073	177	106	2	18	192	15	177	5.51e-24	93.6
MS.gene072555.t1	AT1G70490	31.073	177	106	2	18	192	15	177	5.51e-24	93.6
MS.gene072555.t1	AT1G70490	31.073	177	106	2	18	192	15	177	5.51e-24	93.6
MS.gene072555.t1	AT1G70490	31.073	177	106	2	18	192	15	177	5.51e-24	93.6
MS.gene072555.t1	AT1G70490	31.073	177	106	2	18	192	15	177	5.51e-24	93.6
MS.gene072555.t1	AT1G70490	31.073	177	106	2	18	192	15	177	5.51e-24	93.6
MS.gene072555.t1	AT1G23490	31.073	177	106	2	18	192	15	177	5.51e-24	93.6
MS.gene072555.t1	AT1G70490	31.073	177	106	2	18	192	15	177	5.51e-24	93.6
MS.gene072555.t1	AT5G14670	31.073	177	106	2	18	192	15	177	6.58e-24	93.6
MS.gene072555.t1	AT2G24765	40.708	113	67	0	18	130	15	127	6.79e-24	92.0
MS.gene072555.t1	AT2G18390	32.749	171	104	1	22	192	18	177	8.53e-24	93.2
MS.gene072555.t1	AT3G49860	37.143	140	87	1	15	153	6	145	1.18e-23	92.8
MS.gene072555.t1	AT5G37680	36.029	136	86	1	18	152	17	152	1.38e-22	90.1
MS.gene072555.t1	AT5G17060	28.796	191	116	3	3	193	8	178	3.53e-22	89.4
MS.gene072555.t1	AT5G17060	28.796	191	116	3	3	193	8	178	3.53e-22	89.4
MS.gene072555.t1	AT3G03120	32.877	146	90	1	3	148	8	145	9.68e-22	88.2
MS.gene072555.t1	AT2G15310	29.189	185	119	1	8	192	5	177	9.86e-22	88.2
MS.gene072555.t1	AT5G52210	36.242	149	77	3	15	148	7	152	3.34e-20	84.3
MS.gene072555.t1	AT5G52210	36.242	149	77	3	15	148	7	152	3.34e-20	84.3
MS.gene072555.t1	AT3G03120	32.061	131	81	1	3	133	8	130	5.19e-20	82.0
MS.gene072555.t1	AT5G37680	38.835	103	63	0	50	152	3	105	2.46e-18	77.8
MS.gene072555.t1	AT1G02430	31.206	141	89	4	18	151	15	154	1.36e-14	68.6
MS.gene072555.t1	AT1G02430	31.206	141	89	4	18	151	15	154	2.30e-14	68.6

Find 44 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GTGCAGTATTGTGAAGAAAA+TGG	0.290748	7.3:+4401754	MS.gene072555:CDS
TTCTAGCATCGCTTGGATTA+TGG	0.331495	7.3:+4399606	MS.gene072555:CDS
AGACGAATTGCGTTACCATT+TGG	0.332275	7.3:+4401655	MS.gene072555:CDS
GACGAATTGCGTTACCATTT+GGG	0.348316	7.3:+4401656	MS.gene072555:CDS
GAGGCTAAGATCTTATTCTT+AGG	0.351250	7.3:+4399635	MS.gene072555:CDS
TCTCCTTTCTGATGAATCAT+TGG	0.399431	7.3:+4401574	MS.gene072555:CDS
AATGTCCCTTTCCTTGTCCT+TGG	0.407599	7.3:+4401599	MS.gene072555:CDS
ATCAGATTGCTCGTAGAGTC+TGG	0.419780	7.3:+4400374	MS.gene072555:CDS
CATCAGAAGAGTTGAGTATT+GGG	0.422638	7.3:+4400317	MS.gene072555:CDS
TCGTCTTCTGAGGCAGCATA+TGG	0.429799	7.3:-4401638	None:intergenic
GATACTGAGTCGGCTGATGC+TGG	0.450131	7.3:-4400291	None:intergenic
GTTATGGTGATGGTTTCAAA+TGG	0.456424	7.3:+4401777	MS.gene072555:CDS
TACGGGGTTCTAGCATCGCT+TGG	0.473883	7.3:+4399599	MS.gene072555:CDS
TTATGGTGATGGTTTCAAAT+GGG	0.483238	7.3:+4401778	MS.gene072555:CDS
ACATCAGAAGAGTTGAGTAT+TGG	0.487462	7.3:+4400316	MS.gene072555:CDS
GGCTTGAGCAACTTCACCAC+TGG	0.494395	7.3:+4401677	MS.gene072555:CDS
TGCAGTATTGTGAAGAAAAT+GGG	0.501905	7.3:+4401755	MS.gene072555:CDS
TGAAGTTGCTCAAGCCCAAA+TGG	0.508916	7.3:-4401670	None:intergenic
TGTTTCCAAGGACAAGGAAA+GGG	0.516162	7.3:-4401604	None:intergenic
GGTAGATGCAGTGGTCTACT+TGG	0.525431	7.3:+4401499	MS.gene072555:intron
CTTCACCACTGGCAAGGGTA+AGG	0.533342	7.3:+4401688	MS.gene072555:CDS
TTGTTTCCAAGGACAAGGAA+AGG	0.535849	7.3:-4401605	None:intergenic
AAGAAAATGGGTTATGGTGA+TGG	0.542914	7.3:+4401767	MS.gene072555:CDS
TTGCCAATGATTCATCAGAA+AGG	0.547484	7.3:-4401577	None:intergenic
TTCTTAGGTCTCGACAACGC+CGG	0.556039	7.3:+4399650	MS.gene072555:CDS
GAGCAACTTCACCACTGGCA+AGG	0.556603	7.3:+4401682	MS.gene072555:CDS
AGCAACTTCACCACTGGCAA+GGG	0.561923	7.3:+4401683	MS.gene072555:CDS
ATTGTGAAGAAAATGGGTTA+TGG	0.564263	7.3:+4401761	MS.gene072555:CDS
CTGGAAAGATTACTATGCCC+AGG	0.565879	7.3:+4400393	MS.gene072555:CDS
CTTGGTTGATGCTTATGACA+AGG	0.569852	7.3:+4401517	MS.gene072555:CDS
AGACTCAAATGTCCGACCCA+TGG	0.577020	7.3:+4401721	MS.gene072555:CDS
GCTTGGATTATGGCAGAAAG+AGG	0.588367	7.3:+4399616	MS.gene072555:CDS
ATACTCAACTCTTCTGATGT+CGG	0.590024	7.3:-4400313	None:intergenic
TCTGATGTCGGATACTGAGT+CGG	0.590760	7.3:-4400301	None:intergenic
ACTGCACATGAATACCTCCA+TGG	0.596081	7.3:-4401738	None:intergenic
CTGCACATGAATACCTCCAT+GGG	0.601771	7.3:-4401737	None:intergenic
GTCTTTGAGCATATGAAGCA+AGG	0.603316	7.3:-4399681	None:intergenic
GCTTCATATGCTCAAAGACG+AGG	0.605146	7.3:+4399685	MS.gene072555:CDS
GTAACGCAATTCGTCTTCTG+AGG	0.630635	7.3:-4401648	None:intergenic
ATTTACCTTACCCTTGCCAG+TGG	0.635981	7.3:-4401693	None:intergenic
TGCAATGCAGGTAGATGCAG+TGG	0.654691	7.3:+4401490	MS.gene072555:intron
CTCAAATGTCCGACCCATGG+AGG	0.662910	7.3:+4401724	MS.gene072555:CDS
ACATGAATACCTCCATGGGT+CGG	0.682919	7.3:-4401733	None:intergenic
TTTGAGCATATGAAGCAAGG+TGG	0.690241	7.3:-4399678	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATAATAATGATAATAATAAG+TGG	-	chr7.3:4399727-4399746	None:intergenic	10.0%
!!	TAATAATGATAATAATAAGT+GGG	-	chr7.3:4399726-4399745	None:intergenic	10.0%
!!	ATATCTTAATCATGAAAATT+TGG	+	chr7.3:4400473-4400492	MS.gene072555:intron	15.0%
!!	AGACATAATATAATATAGGA+AGG	-	chr7.3:4400510-4400529	None:intergenic	20.0%
!!	AGCAATAGTATAAAATGAAA+AGG	-	chr7.3:4401341-4401360	None:intergenic	20.0%
!!	TCCAAGACATAATATAATAT+AGG	-	chr7.3:4400514-4400533	None:intergenic	20.0%
!!	TCCTATATTATATTATGTCT+TGG	+	chr7.3:4400510-4400529	MS.gene072555:intron	20.0%
!!!	AAGTTTAAAGCTTTTGATTT+GGG	+	chr7.3:4400346-4400365	MS.gene072555:CDS	20.0%
!!!	ATAGAATATTTTGTAGTCAA+AGG	+	chr7.3:4399817-4399836	MS.gene072555:intron	20.0%
!	AGATTAATACATACTTGCTT+TGG	+	chr7.3:4401149-4401168	MS.gene072555:intron	25.0%
!	ATACAATGGATAGAATAGAA+GGG	-	chr7.3:4400999-4401018	None:intergenic	25.0%
!	ATTATATTATGTCTTGGACT+TGG	+	chr7.3:4400516-4400535	MS.gene072555:intron	25.0%
!	TAAACATATCTCAACAAAAG+TGG	-	chr7.3:4400027-4400046	None:intergenic	25.0%
!	TATACAATGGATAGAATAGA+AGG	-	chr7.3:4401000-4401019	None:intergenic	25.0%
!	TCTTATGTTCTTTACCATAA+TGG	+	chr7.3:4400677-4400696	MS.gene072555:intron	25.0%
!	TTATAAGCTACTGTATACAA+TGG	-	chr7.3:4401013-4401032	None:intergenic	25.0%
!!	GTTTCTTTTATGATGAGAAT+TGG	+	chr7.3:4400252-4400271	MS.gene072555:intron	25.0%
!!	TATTACCGATATTGTTCTTT+TGG	+	chr7.3:4399744-4399763	MS.gene072555:intron	25.0%
!!	TCAAAGTCAAATTGATTCAA+CGG	-	chr7.3:4401070-4401089	None:intergenic	25.0%
!!!	AGTTTAAAGCTTTTGATTTG+GGG	+	chr7.3:4400347-4400366	MS.gene072555:CDS	25.0%
!!!	CAAGTTTAAAGCTTTTGATT+TGG	+	chr7.3:4400345-4400364	MS.gene072555:CDS	25.0%
!!!	GAATATCAATTTTGTTTCCA+AGG	-	chr7.3:4401619-4401638	None:intergenic	25.0%
!!!	GTAACTTTATTTTGTTTGTG+TGG	+	chr7.3:4400545-4400564	MS.gene072555:intron	25.0%
!!!	TTACTGTTGATAATGTTTTG+TGG	+	chr7.3:4399791-4399810	MS.gene072555:intron	25.0%
	AAAATACTACTTCATGTTCG+AGG	-	chr7.3:4401197-4401216	None:intergenic	30.0%
	AAACCATTAGAAGGATTTAG+AGG	+	chr7.3:4400778-4400797	MS.gene072555:intron	30.0%
	AAATGACTGTGTTTCCATTA+TGG	-	chr7.3:4400694-4400713	None:intergenic	30.0%
	AACACACCAAAACAAGTTAA+GGG	-	chr7.3:4400060-4400079	None:intergenic	30.0%
	AGAAACATTATACCAAGACT+CGG	-	chr7.3:4400238-4400257	None:intergenic	30.0%
	AGATTCTAAGCCAATATCTT+AGG	-	chr7.3:4400624-4400643	None:intergenic	30.0%
	AGTACCTTATAAGACATTTC+TGG	+	chr7.3:4401364-4401383	MS.gene072555:intron	30.0%
	CCATTCCAAAAGAACAATAT+CGG	-	chr7.3:4399752-4399771	None:intergenic	30.0%
	TATAGAACTGCCTAAGATAT+TGG	+	chr7.3:4400611-4400630	MS.gene072555:intron	30.0%
	TCTCAGTTAAATATTGAGCA+GGG	-	chr7.3:4401290-4401309	None:intergenic	30.0%
	TGAGATATGTTTATCCAAAC+AGG	+	chr7.3:4400034-4400053	MS.gene072555:intron	30.0%
	TGCAGTATTGTGAAGAAAAT+GGG	+	chr7.3:4401755-4401774	MS.gene072555:CDS	30.0%
	TGGTTTATGATAGAACACTA+TGG	+	chr7.3:4400822-4400841	MS.gene072555:intron	30.0%
	TTAATACATACTTGCTTTGG+TGG	+	chr7.3:4401152-4401171	MS.gene072555:intron	30.0%
	TTCTCAGTTAAATATTGAGC+AGG	-	chr7.3:4401291-4401310	None:intergenic	30.0%
	TTGTAAGAGAAACCATTAGA+AGG	+	chr7.3:4400769-4400788	MS.gene072555:intron	30.0%
	TTTACACTTATTACTGTCAG+CGG	+	chr7.3:4399851-4399870	MS.gene072555:intron	30.0%
!	AAACCATCAAGTTTGTTTCT+CGG	-	chr7.3:4401254-4401273	None:intergenic	30.0%
!	CAATGAGTTGGATTCAAATA+TGG	+	chr7.3:4400802-4400821	MS.gene072555:intron	30.0%
!!	AAGATTTGCTGAGTCAAAAA+AGG	+	chr7.3:4401541-4401560	MS.gene072555:CDS	30.0%
!!	ACAAAAAAGTATTGAAGGCA+TGG	-	chr7.3:4400430-4400449	None:intergenic	30.0%
!!	ATTGTGAAGAAAATGGGTTA+TGG	+	chr7.3:4401761-4401780	MS.gene072555:CDS	30.0%
!!	TAGCCACAAAAAAGTATTGA+AGG	-	chr7.3:4400435-4400454	None:intergenic	30.0%
!!	TTATGGTGATGGTTTCAAAT+GGG	+	chr7.3:4401778-4401797	MS.gene072555:CDS	30.0%
!!!	ATGCCTTCAATACTTTTTTG+TGG	+	chr7.3:4400429-4400448	MS.gene072555:intron	30.0%
!!!	ATTGTTCTTTTGGAATGGAA+CGG	+	chr7.3:4399754-4399773	MS.gene072555:intron	30.0%
!!!	GTTTAAAGCTTTTGATTTGG+GGG	+	chr7.3:4400348-4400367	MS.gene072555:CDS	30.0%
!!!	TTTAAAGCTTTTGATTTGGG+GGG	+	chr7.3:4400349-4400368	MS.gene072555:CDS	30.0%
!!!	TTTTTGGTGGATTGGTTTTA+CGG	+	chr7.3:4399581-4399600	MS.gene072555:CDS	30.0%
	ACATCAGAAGAGTTGAGTAT+TGG	+	chr7.3:4400316-4400335	MS.gene072555:CDS	35.0%
	AGAAACCAGAAAAGATTACG+TGG	-	chr7.3:4400165-4400184	None:intergenic	35.0%
	AGAGCCAGAAATGTCTTATA+AGG	-	chr7.3:4401371-4401390	None:intergenic	35.0%
	ATACTCAACTCTTCTGATGT+CGG	-	chr7.3:4400316-4400335	None:intergenic	35.0%
	ATATCTTTATCTCCGAGTCT+TGG	+	chr7.3:4400223-4400242	MS.gene072555:intron	35.0%
	ATGAAAATTTGGATGCCAGT+AGG	+	chr7.3:4400484-4400503	MS.gene072555:intron	35.0%
	CAACACACCAAAACAAGTTA+AGG	-	chr7.3:4400061-4400080	None:intergenic	35.0%
	CATCAGAAGAGTTGAGTATT+GGG	+	chr7.3:4400317-4400336	MS.gene072555:CDS	35.0%
	GAGGCTAAGATCTTATTCTT+AGG	+	chr7.3:4399635-4399654	MS.gene072555:CDS	35.0%
	GTGCAGTATTGTGAAGAAAA+TGG	+	chr7.3:4401754-4401773	MS.gene072555:CDS	35.0%
	TAACCGAGAAACAAACTTGA+TGG	+	chr7.3:4401248-4401267	MS.gene072555:intron	35.0%
	TAATCAGATGTGCACATTCT+AGG	+	chr7.3:4401109-4401128	MS.gene072555:intron	35.0%
	TATAATATAGGAAGGCCTAC+TGG	-	chr7.3:4400502-4400521	None:intergenic	35.0%
	TCTCCTTTCTGATGAATCAT+TGG	+	chr7.3:4401574-4401593	MS.gene072555:CDS	35.0%
	TGACCTCTAAATCCTTCTAA+TGG	-	chr7.3:4400784-4400803	None:intergenic	35.0%
	TTGCCAATGATTCATCAGAA+AGG	-	chr7.3:4401580-4401599	None:intergenic	35.0%
!	AAACTTGATGGTTTGGACTT+TGG	+	chr7.3:4401260-4401279	MS.gene072555:intron	35.0%
!	GAGAAACAAACTTGATGGTT+TGG	+	chr7.3:4401253-4401272	MS.gene072555:intron	35.0%
!	TTGAGTTTGCTTGTTCAACT+AGG	+	chr7.3:4401086-4401105	MS.gene072555:intron	35.0%
!!	AAGAAAATGGGTTATGGTGA+TGG	+	chr7.3:4401767-4401786	MS.gene072555:CDS	35.0%
!!	CAATTTTGTTTCCAAGGACA+AGG	-	chr7.3:4401613-4401632	None:intergenic	35.0%
!!	CCGATATTGTTCTTTTGGAA+TGG	+	chr7.3:4399749-4399768	MS.gene072555:intron	35.0%
!!	GTTATGGTGATGGTTTCAAA+TGG	+	chr7.3:4401777-4401796	MS.gene072555:CDS	35.0%
!!!	CTTTATTTTGTTTGTGTGGC+TGG	+	chr7.3:4400549-4400568	MS.gene072555:intron	35.0%
!!!	TTTTGGTGGATTGGTTTTAC+GGG	+	chr7.3:4399582-4399601	MS.gene072555:CDS	35.0%
	AAACAAGTTAAGGGCCTGTT+TGG	-	chr7.3:4400051-4400070	None:intergenic	40.0%
	AACTGAGAAACATTACGTGC+TGG	+	chr7.3:4401428-4401447	MS.gene072555:intron	40.0%
	AGACGAATTGCGTTACCATT+TGG	+	chr7.3:4401655-4401674	MS.gene072555:CDS	40.0%
	ATCATGAGTTGTTGCAATGC+AGG	+	chr7.3:4401478-4401497	MS.gene072555:intron	40.0%
	CAACGGCAGAAATGATTCAA+CGG	-	chr7.3:4401053-4401072	None:intergenic	40.0%
	GACGAATTGCGTTACCATTT+GGG	+	chr7.3:4401656-4401675	MS.gene072555:CDS	40.0%
	GGATTTAGAGGTCAATGAGT+TGG	+	chr7.3:4400790-4400809	MS.gene072555:intron	40.0%
	GTCTTTGAGCATATGAAGCA+AGG	-	chr7.3:4399684-4399703	None:intergenic	40.0%
	TGCTGAGTCAAAAAAGGAGT+TGG	+	chr7.3:4401547-4401566	MS.gene072555:CDS	40.0%
	TGTTTCCAAGGACAAGGAAA+GGG	-	chr7.3:4401607-4401626	None:intergenic	40.0%
	TTCTAGCATCGCTTGGATTA+TGG	+	chr7.3:4399606-4399625	MS.gene072555:CDS	40.0%
	TTGTTTCCAAGGACAAGGAA+AGG	-	chr7.3:4401608-4401627	None:intergenic	40.0%
	TTTGAGCATATGAAGCAAGG+TGG	-	chr7.3:4399681-4399700	None:intergenic	40.0%
!	CTTGGTTGATGCTTATGACA+AGG	+	chr7.3:4401517-4401536	MS.gene072555:CDS	40.0%
!	TTCGACCACGTAATCTTTTC+TGG	+	chr7.3:4400157-4400176	MS.gene072555:intron	40.0%
!!!	AACAGGCCCTTAACTTGTTT+TGG	+	chr7.3:4400051-4400070	MS.gene072555:intron	40.0%
!!!	TTGTTTTGGTGTGTTGCTCT+TGG	+	chr7.3:4400065-4400084	MS.gene072555:intron	40.0%
!!!	TTTGGTGGATTGGTTTTACG+GGG	+	chr7.3:4399583-4399602	MS.gene072555:CDS	40.0%
	AATGTCCCTTTCCTTGTCCT+TGG	+	chr7.3:4401599-4401618	MS.gene072555:CDS	45.0%
	ACATGAATACCTCCATGGGT+CGG	-	chr7.3:4401736-4401755	None:intergenic	45.0%
	ACTGCACATGAATACCTCCA+TGG	-	chr7.3:4401741-4401760	None:intergenic	45.0%
	ATCAGATTGCTCGTAGAGTC+TGG	+	chr7.3:4400374-4400393	MS.gene072555:CDS	45.0%
	ATTTACCTTACCCTTGCCAG+TGG	-	chr7.3:4401696-4401715	None:intergenic	45.0%
	CTGCACATGAATACCTCCAT+GGG	-	chr7.3:4401740-4401759	None:intergenic	45.0%
	CTGGAAAGATTACTATGCCC+AGG	+	chr7.3:4400393-4400412	MS.gene072555:CDS	45.0%
	GCATGGAAAAAGAGAGACCT+GGG	-	chr7.3:4400413-4400432	None:intergenic	45.0%
	GCTTCATATGCTCAAAGACG+AGG	+	chr7.3:4399685-4399704	MS.gene072555:CDS	45.0%
	GCTTGGATTATGGCAGAAAG+AGG	+	chr7.3:4399616-4399635	MS.gene072555:CDS	45.0%
	GTAACGCAATTCGTCTTCTG+AGG	-	chr7.3:4401651-4401670	None:intergenic	45.0%
	TCTGATGTCGGATACTGAGT+CGG	-	chr7.3:4400304-4400323	None:intergenic	45.0%
	TGAAGTTGCTCAAGCCCAAA+TGG	-	chr7.3:4401673-4401692	None:intergenic	45.0%
!	AAGCCTTATCCCACTAAGTG+GGG	-	chr7.3:4400871-4400890	None:intergenic	45.0%
!	CAAGCCTTATCCCACTAAGT+GGG	-	chr7.3:4400872-4400891	None:intergenic	45.0%
!	TACTGTCAGCGGAGTTTTCT+AGG	+	chr7.3:4399862-4399881	MS.gene072555:intron	45.0%
!!	ATGAAGCAAGGTGGTTTTGC+CGG	-	chr7.3:4399672-4399691	None:intergenic	45.0%
!!	TTTTGTTTGTGTGGCTGGAC+TGG	+	chr7.3:4400554-4400573	MS.gene072555:intron	45.0%
	ACTAAGTGGGGTCAGGTACA+TGG	-	chr7.3:4400859-4400878	None:intergenic	50.0%
	AGACTCAAATGTCCGACCCA+TGG	+	chr7.3:4401721-4401740	MS.gene072555:CDS	50.0%
	AGCAACTTCACCACTGGCAA+GGG	+	chr7.3:4401683-4401702	MS.gene072555:CDS	50.0%
	ATGTACCTGACCCCACTTAG+TGG	+	chr7.3:4400858-4400877	MS.gene072555:intron	50.0%
	CCACTTAGTGGGATAAGGCT+TGG	+	chr7.3:4400870-4400889	MS.gene072555:intron	50.0%
	GGCATGGAAAAAGAGAGACC+TGG	-	chr7.3:4400414-4400433	None:intergenic	50.0%
	GGTAGATGCAGTGGTCTACT+TGG	+	chr7.3:4401499-4401518	MS.gene072555:intron	50.0%
	TGACCCCACTTAGTGGGATA+AGG	+	chr7.3:4400865-4400884	MS.gene072555:intron	50.0%
	TGCAATGCAGGTAGATGCAG+TGG	+	chr7.3:4401490-4401509	MS.gene072555:intron	50.0%
	TGTACCTGACCCCACTTAGT+GGG	+	chr7.3:4400859-4400878	MS.gene072555:intron	50.0%
	TTATCCCACTAAGTGGGGTC+AGG	-	chr7.3:4400866-4400885	None:intergenic	50.0%
	TTCTTAGGTCTCGACAACGC+CGG	+	chr7.3:4399650-4399669	MS.gene072555:CDS	50.0%
!	CCAAGCCTTATCCCACTAAG+TGG	-	chr7.3:4400873-4400892	None:intergenic	50.0%
!!	TCGTCTTCTGAGGCAGCATA+TGG	-	chr7.3:4401641-4401660	None:intergenic	50.0%
	CTCAAATGTCCGACCCATGG+AGG	+	chr7.3:4401724-4401743	MS.gene072555:CDS	55.0%
	CTTCACCACTGGCAAGGGTA+AGG	+	chr7.3:4401688-4401707	MS.gene072555:CDS	55.0%
	GAGCAACTTCACCACTGGCA+AGG	+	chr7.3:4401682-4401701	MS.gene072555:CDS	55.0%
	GATACTGAGTCGGCTGATGC+TGG	-	chr7.3:4400294-4400313	None:intergenic	55.0%
	GGCTTGAGCAACTTCACCAC+TGG	+	chr7.3:4401677-4401696	MS.gene072555:CDS	55.0%
!	TACGGGGTTCTAGCATCGCT+TGG	+	chr7.3:4399599-4399618	MS.gene072555:CDS	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	4399578	4401820	4399578	ID=MS.gene072555
chr7.3	mRNA	4399578	4401820	4399578	ID=MS.gene072555.t1;Parent=MS.gene072555
chr7.3	exon	4399578	4399706	4399578	ID=MS.gene072555.t1.exon1;Parent=MS.gene072555.t1
chr7.3	CDS	4399578	4399706	4399578	ID=cds.MS.gene072555.t1;Parent=MS.gene072555.t1
chr7.3	exon	4400283	4400414	4400283	ID=MS.gene072555.t1.exon2;Parent=MS.gene072555.t1
chr7.3	CDS	4400283	4400414	4400283	ID=cds.MS.gene072555.t1;Parent=MS.gene072555.t1
chr7.3	exon	4401500	4401820	4401500	ID=MS.gene072555.t1.exon3;Parent=MS.gene072555.t1
chr7.3	CDS	4401500	4401820	4401500	ID=cds.MS.gene072555.t1;Parent=MS.gene072555.t1

Gene Sequence

>MS.gene072555

ATGTTTTTGGTGGATTGGTTTTACGGGGTTCTAGCATCGCTTGGATTATGGCAGAAAGAGGCTAAGATCTTATTCTTAGGTCTCGACAACGCCGGCAAAACCACCTTGCTTCATATGCTCAAAGACGAGGTTTGTTCTTCAATTTCCCACTTATTATTATCATTATTATTACCGATATTGTTCTTTTGGAATGGAACGGATCTGTGATCTTATTTACTGTTGATAATGTTTTGTGGTTAATAGAATATTTTGTAGTCAAAGGAGTTCATGATTTTTACACTTATTACTGTCAGCGGAGTTTTCTAGGATCAATATGATATATTATACATGTTTCTGAGAAATTTCGCAATTGTGTTACTTAGATACTCAATCAACATAATTTCATTTGCTCTTAGTTTAAAATTATTTCGCAGTTTTCTAAAATATTGATTAATTTCTCAGTTTTTCCACTTTTGTTGAGATATGTTTATCCAAACAGGCCCTTAACTTGTTTTGGTGTGTTGCTCTTGGTCTCTTATCTTGACATCTAGCATCTGTTTTAAAATTTTATTGTGATTGCTCATATCTGTATTATTTTGTTTCGACCACGTAATCTTTTCTGGTTTCTGCAAGCAATGCATTTTGATAGTTAACAAGCGTGTGTCTATATCTTTATCTCCGAGTCTTGGTATAATGTTTCTTTTATGATGAGAATTGGTTTTGCAGAGATTAGTCCAGCATCAGCCGACTCAGTATCCGACATCAGAAGAGTTGAGTATTGGGAAGATCAAGTTTAAAGCTTTTGATTTGGGGGGTCATCAGATTGCTCGTAGAGTCTGGAAAGATTACTATGCCCAGGTCTCTCTTTTTCCATGCCTTCAATACTTTTTTGTGGCTAGTGTAGCAAAGTGAGAGAATATCTTAATCATGAAAATTTGGATGCCAGTAGGCCTTCCTATATTATATTATGTCTTGGACTTGGAAACATGTAACTTTATTTTGTTTGTGTGGCTGGACTGGCTAATTTGTGTGTTTATCAGTTAGTGATTTCAGATATAGAACTGCCTAAGATATTGGCTTAGAATCTACAAACAAATTCTATCAGTCATGAAGATTTTATTCTTATGTTCTTTACCATAATGGAAACACAGTCATTTAGTTTTTAAAAAAGTAAATAAATTATTGACAAATTTTTAGTTTTTAAAAATATTATTGTAAGAGAAACCATTAGAAGGATTTAGAGGTCAATGAGTTGGATTCAAATATGGTTTATGATAGAACACTATGGCGTAATTTGATCCATGTACCTGACCCCACTTAGTGGGATAAGGCTTGGTTGTTGTTGTAAAATATTATTGTAAAAAATAACTACTATCTTGTTGCAGAATGTTCTTATATCTAACAAATTACATGAATACAGCTTAAGCTAAAGATTTATGCCCTTCTATTCTATCCATTGTATACAGTAGCTTATAATTTATAAGACATTTCTGCCGTTGAATCATTTCTGCCGTTGAATCAATTTGACTTTGAGTTTGCTTGTTCAACTAGGTAATCAGATGTGCACATTCTAGGAAGAATTATTTCATTAGAGATTAATACATACTTGCTTTGGTGGTAGAATCTAATTCAATGCACCTCGAACATGAAGTAGTATTTTGTAGCTTTGTTACTACAAAAGTTCAATGTTTTAACCGAGAAACAAACTTGATGGTTTGGACTTTGGTGTTCCCTGCTCAATATTTAACTGAGAAACAAACATGATGAGTTGCTGATAGCTGCCTTTTCATTTTATACTATTGCTTACAGTACCTTATAAGACATTTCTGGCTCTGAATCAATTTACAACTTAGTAACTTGTTCAATATTTTAACTGAGAAACATTACGTGCTGGTGCTCATTATTTTTTTACTTCATTGTGATCATGAGTTGTTGCAATGCAGGTAGATGCAGTGGTCTACTTGGTTGATGCTTATGACAAGGAAAGATTTGCTGAGTCAAAAAAGGAGTTGGATGCTCTCCTTTCTGATGAATCATTGGCAAATGTCCCTTTCCTTGTCCTTGGAAACAAAATTGATATTCCATATGCTGCCTCAGAAGACGAATTGCGTTACCATTTGGGCTTGAGCAACTTCACCACTGGCAAGGGTAAGGTAAATTTGTCAGACTCAAATGTCCGACCCATGGAGGTATTCATGTGCAGTATTGTGAAGAAAATGGGTTATGGTGATGGTTTCAAATGGGTTTCTCAGTACATCAAATAG

Protein sequence

>MS.gene072555.t1

MFLVDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAQVDAVVYLVDAYDKERFAESKKELDALLSDESLANVPFLVLGNKIDIPYAASEDELRYHLGLSNFTTGKGKVNLSDSNVRPMEVFMCSIVKKMGYGDGFKWVSQYIK