Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072969.t1 | XP_003603477.1 | 94.9 | 255 | 12 | 1 | 1 | 255 | 1 | 254 | 4.20E-46 | 195.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072969.t1 | G7JBR2 | 94.9 | 255 | 12 | 1 | 1 | 255 | 1 | 254 | 3.0e-46 | 195.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049166 | MS.gene072969 | 0.825106 | 5.62E-54 | -1.69E-46 |
| MS.gene050114 | MS.gene072969 | 0.867542 | 1.27E-65 | -1.69E-46 |
| MS.gene050317 | MS.gene072969 | 0.826078 | 3.30E-54 | -1.69E-46 |
| MS.gene050320 | MS.gene072969 | 0.812906 | 3.35E-51 | -1.69E-46 |
| MS.gene050752 | MS.gene072969 | 0.826235 | 3.03E-54 | -1.69E-46 |
| MS.gene050838 | MS.gene072969 | 0.84631 | 2.35E-59 | -1.69E-46 |
| MS.gene051003 | MS.gene072969 | 0.834143 | 3.55E-56 | -1.69E-46 |
| MS.gene051233 | MS.gene072969 | 0.805008 | 1.64E-49 | -1.69E-46 |
| MS.gene051245 | MS.gene072969 | 0.804796 | 1.82E-49 | -1.69E-46 |
| MS.gene051343 | MS.gene072969 | 0.836606 | 8.48E-57 | -1.69E-46 |
| MS.gene051746 | MS.gene072969 | 0.803952 | 2.73E-49 | -1.69E-46 |
| MS.gene051748 | MS.gene072969 | 0.837132 | 6.23E-57 | -1.69E-46 |
| MS.gene051756 | MS.gene072969 | 0.805043 | 1.61E-49 | -1.69E-46 |
| MS.gene051903 | MS.gene072969 | 0.861852 | 7.67E-64 | -1.69E-46 |
| MS.gene051975 | MS.gene072969 | 0.81212 | 4.97E-51 | -1.69E-46 |
| MS.gene052434 | MS.gene072969 | 0.824475 | 7.91E-54 | -1.69E-46 |
| MS.gene052818 | MS.gene072969 | -0.809533 | 1.81E-50 | -1.69E-46 |
| MS.gene052947 | MS.gene072969 | 0.834565 | 2.78E-56 | -1.69E-46 |
| MS.gene053058 | MS.gene072969 | 0.844054 | 9.59E-59 | -1.69E-46 |
| MS.gene053109 | MS.gene072969 | 0.815393 | 9.46E-52 | -1.69E-46 |
| MS.gene053167 | MS.gene072969 | 0.813424 | 2.58E-51 | -1.69E-46 |
| MS.gene053786 | MS.gene072969 | 0.800372 | 1.49E-48 | -1.69E-46 |
| MS.gene053952 | MS.gene072969 | 0.819354 | 1.21E-52 | -1.69E-46 |
| MS.gene054403 | MS.gene072969 | 0.825837 | 3.77E-54 | -1.69E-46 |
| MS.gene055424 | MS.gene072969 | 0.846728 | 1.81E-59 | -1.69E-46 |
| MS.gene055441 | MS.gene072969 | 0.807149 | 5.82E-50 | -1.69E-46 |
| MS.gene055603 | MS.gene072969 | 0.806806 | 6.88E-50 | -1.69E-46 |
| MS.gene056097 | MS.gene072969 | 0.804657 | 1.94E-49 | -1.69E-46 |
| MS.gene056181 | MS.gene072969 | 0.811222 | 7.80E-51 | -1.69E-46 |
| MS.gene056403 | MS.gene072969 | 0.808203 | 3.48E-50 | -1.69E-46 |
| MS.gene056580 | MS.gene072969 | 0.817354 | 3.44E-52 | -1.69E-46 |
| MS.gene056605 | MS.gene072969 | 0.826121 | 3.23E-54 | -1.69E-46 |
| MS.gene056752 | MS.gene072969 | 0.827409 | 1.59E-54 | -1.69E-46 |
| MS.gene056787 | MS.gene072969 | 0.835748 | 1.40E-56 | -1.69E-46 |
| MS.gene056849 | MS.gene072969 | 0.810061 | 1.39E-50 | -1.69E-46 |
| MS.gene056986 | MS.gene072969 | 0.829709 | 4.42E-55 | -1.69E-46 |
| MS.gene056992 | MS.gene072969 | 0.8111 | 8.29E-51 | -1.69E-46 |
| MS.gene057094 | MS.gene072969 | 0.861051 | 1.35E-63 | -1.69E-46 |
| MS.gene057234 | MS.gene072969 | 0.821898 | 3.16E-53 | -1.69E-46 |
| MS.gene057451 | MS.gene072969 | -0.830715 | 2.51E-55 | -1.69E-46 |
| MS.gene057452 | MS.gene072969 | -0.851879 | 6.66E-61 | -1.69E-46 |
| MS.gene05781 | MS.gene072969 | 0.849497 | 3.11E-60 | -1.69E-46 |
| MS.gene057999 | MS.gene072969 | 0.832379 | 9.77E-56 | -1.69E-46 |
| MS.gene058054 | MS.gene072969 | 0.807947 | 3.94E-50 | -1.69E-46 |
| MS.gene058055 | MS.gene072969 | 0.804744 | 1.86E-49 | -1.69E-46 |
| MS.gene058074 | MS.gene072969 | 0.85024 | 1.93E-60 | -1.69E-46 |
| MS.gene058238 | MS.gene072969 | 0.848826 | 4.79E-60 | -1.69E-46 |
| MS.gene058638 | MS.gene072969 | 0.813133 | 2.99E-51 | -1.69E-46 |
| MS.gene058639 | MS.gene072969 | 0.827461 | 1.55E-54 | -1.69E-46 |
| MS.gene058654 | MS.gene072969 | 0.82564 | 4.20E-54 | -1.69E-46 |
| MS.gene058758 | MS.gene072969 | 0.800384 | 1.48E-48 | -1.69E-46 |
| MS.gene05880 | MS.gene072969 | 0.840037 | 1.11E-57 | -1.69E-46 |
| MS.gene059146 | MS.gene072969 | 0.803055 | 4.18E-49 | -1.69E-46 |
| MS.gene059171 | MS.gene072969 | 0.802278 | 6.05E-49 | -1.69E-46 |
| MS.gene059360 | MS.gene072969 | 0.811053 | 8.49E-51 | -1.69E-46 |
| MS.gene06001 | MS.gene072969 | 0.823035 | 1.72E-53 | -1.69E-46 |
| MS.gene06011 | MS.gene072969 | 0.840672 | 7.55E-58 | -1.69E-46 |
| MS.gene060296 | MS.gene072969 | 0.804639 | 1.96E-49 | -1.69E-46 |
| MS.gene060297 | MS.gene072969 | 0.819299 | 1.25E-52 | -1.69E-46 |
| MS.gene060563 | MS.gene072969 | 0.802559 | 5.30E-49 | -1.69E-46 |
| MS.gene060869 | MS.gene072969 | 0.815295 | 9.95E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072969.t1 | MTR_3g108090 | 98.377 | 308 | 4 | 1 | 1 | 308 | 1 | 307 | 0.0 | 595 |
| MS.gene072969.t1 | MTR_3g108100 | 87.107 | 318 | 29 | 3 | 1 | 308 | 1 | 316 | 3.26e-99 | 295 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072969.t1 | AT2G25670 | 60.615 | 325 | 104 | 9 | 1 | 308 | 1 | 318 | 1.12e-43 | 152 |
| MS.gene072969.t1 | AT2G25670 | 60.615 | 325 | 104 | 9 | 1 | 308 | 1 | 318 | 1.12e-43 | 152 |
| MS.gene072969.t1 | AT4G32610 | 55.385 | 325 | 118 | 11 | 1 | 308 | 1 | 315 | 1.77e-33 | 125 |
Find 71 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTTCTTCTTGGCATTCT+TGG | 0.196635 | 3.4:+93890521 | None:intergenic |
| AATCGGAATCGCAGGCGTTT+TGG | 0.237603 | 3.4:-93892236 | MS.gene072969:CDS |
| CGATTCCGATTTGGTTGATT+TGG | 0.262411 | 3.4:+93892254 | None:intergenic |
| TTCTTCTTGACCTCAGGTTC+AGG | 0.291395 | 3.4:+93891100 | None:intergenic |
| CAAGGACAAGAAGAATAATA+AGG | 0.295710 | 3.4:-93892283 | MS.gene072969:CDS |
| AGCAGCGTCCATTTCTTTAC+TGG | 0.341268 | 3.4:+93890356 | None:intergenic |
| CTGCGATTCCGATTCCGATT+TGG | 0.363251 | 3.4:+93892245 | None:intergenic |
| CAGGATAAGAAAGGTGTAGA+TGG | 0.373922 | 3.4:-93890582 | MS.gene072969:CDS |
| TCGGCCTCCTTTGGTGCAGC+TGG | 0.386362 | 3.4:+93891067 | None:intergenic |
| AGTTGACGTTCGGCCTCCTT+TGG | 0.387948 | 3.4:+93891058 | None:intergenic |
| CGAACGTCAACTCTCCAAAA+AGG | 0.392328 | 3.4:-93891047 | MS.gene072969:CDS |
| ATGCTCGGGTTTGTCCTCAC+TGG | 0.394418 | 3.4:+93892113 | None:intergenic |
| GGTTTGTCCTCACTGGGTTG+AGG | 0.405114 | 3.4:+93892120 | None:intergenic |
| TGAAGGTGACGAGGAGGTAG+AGG | 0.413213 | 3.4:-93891164 | MS.gene072969:CDS |
| GTTTGTCCTCACTGGGTTGA+GGG | 0.417417 | 3.4:+93892121 | None:intergenic |
| AAATACCTTGGGATTCATCT+TGG | 0.429606 | 3.4:+93890939 | None:intergenic |
| TGCTAGAGCTGCTGCTCAAG+AGG | 0.430832 | 3.4:-93890334 | MS.gene072969:CDS |
| TCAGCATTCTTCTTGACCTC+AGG | 0.431890 | 3.4:+93891094 | None:intergenic |
| TCAGGTTTCACAGTGTGCTC+TGG | 0.433555 | 3.4:+93891118 | None:intergenic |
| GCACAGGTTGTTGGTTGTAA+TGG | 0.445016 | 3.4:+93890262 | None:intergenic |
| TGCTCGGGTTTGTCCTCACT+GGG | 0.461528 | 3.4:+93892114 | None:intergenic |
| CAAATCAACCAAATCGGAAT+CGG | 0.464697 | 3.4:-93892253 | MS.gene072969:CDS |
| TGTATTTGCAGGTGCACCTC+AGG | 0.467621 | 3.4:-93890601 | MS.gene072969:intron |
| GTTAGACTCTTTCACCTCCT+TGG | 0.471040 | 3.4:+93890482 | None:intergenic |
| TTCTTCCAAATCAACCAAAT+CGG | 0.473799 | 3.4:-93892259 | MS.gene072969:CDS |
| GGTGTAGATGGGGATGTAGA+TGG | 0.477288 | 3.4:-93890570 | MS.gene072969:CDS |
| GTTCTTCTCTTTCTTCTTAG+CGG | 0.490710 | 3.4:+93890284 | None:intergenic |
| TTAAGAAAGTTGCTTCTATG+AGG | 0.492845 | 3.4:-93890389 | MS.gene072969:CDS |
| AAGGACAAGAAGAATAATAA+GGG | 0.503226 | 3.4:-93892282 | MS.gene072969:CDS |
| CACCGTTGAATGCAACCTCA+TGG | 0.509050 | 3.4:-93892206 | MS.gene072969:CDS |
| CTGCTCAAGAGGCTGCTGCA+AGG | 0.511826 | 3.4:-93890323 | MS.gene072969:CDS |
| TGAACAAACCTCAAAATGCT+CGG | 0.523575 | 3.4:+93892098 | None:intergenic |
| GAGGTTGCATTCAACGGTGC+CGG | 0.524888 | 3.4:+93892210 | None:intergenic |
| TGGTGGAAGCAGAAGAGATG+AGG | 0.527011 | 3.4:-93892376 | MS.gene072969:CDS |
| AAAGAAGGATAAAGCTTCCA+AGG | 0.528000 | 3.4:-93890499 | MS.gene072969:CDS |
| GTCCTCACTGGGTTGAGGGT+CGG | 0.528008 | 3.4:+93892125 | None:intergenic |
| AGGATAAGAAAGGTGTAGAT+GGG | 0.528793 | 3.4:-93890581 | MS.gene072969:CDS |
| CAAATCGGAATCGGAATCGC+AGG | 0.529120 | 3.4:-93892244 | MS.gene072969:CDS |
| GCCCATGAGGTTGCATTCAA+CGG | 0.535338 | 3.4:+93892204 | None:intergenic |
| GAACAAACCTCAAAATGCTC+GGG | 0.543027 | 3.4:+93892099 | None:intergenic |
| AGGCTGCTGCAAGGAACGCA+AGG | 0.544412 | 3.4:-93890314 | MS.gene072969:CDS |
| TGCAACCTCATGGGCTGATG+TGG | 0.545900 | 3.4:-93892196 | MS.gene072969:CDS |
| ACACAGAATGAAAGCAATGA+TGG | 0.546801 | 3.4:-93890968 | MS.gene072969:CDS |
| GAAGGAACTTGAAGAGCTTG+AGG | 0.550464 | 3.4:-93891014 | MS.gene072969:CDS |
| ACCGTTGAATGCAACCTCAT+GGG | 0.552821 | 3.4:-93892205 | MS.gene072969:CDS |
| CAGAAGAGATGAGGGTTCGT+TGG | 0.554071 | 3.4:-93892367 | MS.gene072969:CDS |
| GGAAAATTGAGGCGGTGCGG+TGG | 0.568741 | 3.4:+93892146 | None:intergenic |
| TTGTTAAGAATGGTTGGTGG+TGG | 0.570771 | 3.4:-93892393 | None:intergenic |
| TCTACACCTTTCTTATCCTG+AGG | 0.571217 | 3.4:+93890585 | None:intergenic |
| TGAAGTTCCAGCTGCACCAA+AGG | 0.576041 | 3.4:-93891074 | MS.gene072969:CDS |
| GGTTGAGGGTCGGAAAATTG+AGG | 0.576339 | 3.4:+93892135 | None:intergenic |
| TGATGTTGAAAATGCAGAGG+AGG | 0.584727 | 3.4:-93890442 | MS.gene072969:CDS |
| ATCGCGTTGTTAAGAATGGT+TGG | 0.586496 | 3.4:-93892399 | None:intergenic |
| CACTGTGAAACCTGAACCTG+AGG | 0.592278 | 3.4:-93891110 | MS.gene072969:CDS |
| GGTGCACCTCAGGATAAGAA+AGG | 0.599338 | 3.4:-93890591 | MS.gene072969:CDS |
| AGTTCCAGCTGCACCAAAGG+AGG | 0.599579 | 3.4:-93891071 | MS.gene072969:CDS |
| GGATAAGAAAGGTGTAGATG+GGG | 0.604616 | 3.4:-93890580 | MS.gene072969:CDS |
| AATGAAAGCAATGATGGTCA+AGG | 0.616215 | 3.4:-93890962 | MS.gene072969:CDS |
| GGTGGAAGCAGAAGAGATGA+GGG | 0.627510 | 3.4:-93892375 | MS.gene072969:CDS |
| TTTAGATGAAGGTGACGAGG+AGG | 0.634428 | 3.4:-93891170 | MS.gene072969:CDS |
| GTCGGAAAATTGAGGCGGTG+CGG | 0.637381 | 3.4:+93892143 | None:intergenic |
| TTCTGATGTTGAAAATGCAG+AGG | 0.645244 | 3.4:-93890445 | MS.gene072969:CDS |
| GTCATCCACATCAGCCCATG+AGG | 0.661130 | 3.4:+93892191 | None:intergenic |
| GAAGAAGAAGAAATCGGACA+AGG | 0.668190 | 3.4:-93892301 | MS.gene072969:CDS |
| TTCCGACCCTCAACCCAGTG+AGG | 0.672447 | 3.4:-93892127 | MS.gene072969:CDS |
| CAAGGCCAAGATGAATCCCA+AGG | 0.675177 | 3.4:-93890944 | MS.gene072969:intron |
| GCGTTGTTAAGAATGGTTGG+TGG | 0.676274 | 3.4:-93892396 | None:intergenic |
| AAGGAGGTGAAAGAGTCTAA+CGG | 0.681195 | 3.4:-93890480 | MS.gene072969:CDS |
| ATTACAACCAACAACCTGTG+CGG | 0.714310 | 3.4:-93890260 | MS.gene072969:CDS |
| TGAGGGTCGGAAAATTGAGG+CGG | 0.719908 | 3.4:+93892138 | None:intergenic |
| GAAGGATAAAGCTTCCAAGG+AGG | 0.726948 | 3.4:-93890496 | MS.gene072969:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGAAAAAAATTATAAATGC+TGG | + | chr3.4:93891941-93891960 | None:intergenic | 15.0% |
| !! | AAATTGCAAAGTAAAAAATC+TGG | + | chr3.4:93891421-93891440 | None:intergenic | 20.0% |
| !! | AGTTTATCATTACTATTCAA+AGG | + | chr3.4:93891287-93891306 | None:intergenic | 20.0% |
| !! | TGAATAGTAATGATAAACTT+TGG | - | chr3.4:93891288-93891307 | MS.gene072969:intron | 20.0% |
| !! | TTACATTATTTGTAGGATTA+TGG | - | chr3.4:93891743-93891762 | MS.gene072969:intron | 20.0% |
| !!! | ACATTTTGAAGATTTATCTT+AGG | + | chr3.4:93891075-93891094 | None:intergenic | 20.0% |
| !!! | TAAGTATTTGAAAAGCTTTT+CGG | + | chr3.4:93891038-93891057 | None:intergenic | 20.0% |
| !!! | TTTACTTTGCAATTTTTAAC+AGG | - | chr3.4:93891426-93891445 | MS.gene072969:intron | 20.0% |
| ! | AAGGACAAGAAGAATAATAA+GGG | - | chr3.4:93890359-93890378 | MS.gene072969:CDS | 25.0% |
| ! | ACAATAACAAAAAAACATCC+AGG | + | chr3.4:93890615-93890634 | None:intergenic | 25.0% |
| ! | ACACAATTATCAAAAAGATC+AGG | + | chr3.4:93891161-93891180 | None:intergenic | 25.0% |
| ! | GAAAAAATCCAGTAAAGAAA+TGG | - | chr3.4:93892277-93892296 | MS.gene072969:CDS | 25.0% |
| ! | TATCTTAGGATAAAACATGT+TGG | + | chr3.4:93891061-93891080 | None:intergenic | 25.0% |
| ! | TGTCTATGCGATAAATAAAT+AGG | - | chr3.4:93891200-93891219 | MS.gene072969:intron | 25.0% |
| ! | TTTGAAGAAGAAGAAGAAAT+CGG | - | chr3.4:93890334-93890353 | MS.gene072969:CDS | 25.0% |
| !! | ACAAGTTGAAAATAAGGTAT+AGG | - | chr3.4:93890996-93891015 | MS.gene072969:CDS | 25.0% |
| !! | ATGAACACAAGTTGAAAATA+AGG | - | chr3.4:93890990-93891009 | MS.gene072969:CDS | 25.0% |
| !! | GATTTATCTGTGTTTTCTTT+GGG | - | chr3.4:93891356-93891375 | MS.gene072969:intron | 25.0% |
| !! | TGATTTATCTGTGTTTTCTT+TGG | - | chr3.4:93891355-93891374 | MS.gene072969:intron | 25.0% |
| !! | TTGATAATTGTGTTTCTTTG+AGG | - | chr3.4:93891168-93891187 | MS.gene072969:CDS | 25.0% |
| !! | TTGATGACTATTGAGATTAA+GGG | - | chr3.4:93890764-93890783 | MS.gene072969:intron | 25.0% |
| !!! | AATAAATAGGTTTTGTCACA+TGG | - | chr3.4:93891213-93891232 | MS.gene072969:intron | 25.0% |
| !!! | ATAAATAGGTTTTGTCACAT+GGG | - | chr3.4:93891214-93891233 | MS.gene072969:intron | 25.0% |
| !!! | ATGTCATTTTTCTGTTTGTT+TGG | - | chr3.4:93890669-93890688 | MS.gene072969:intron | 25.0% |
| !!! | GAAGAAGATATTTTAGATGA+AGG | - | chr3.4:93891460-93891479 | MS.gene072969:intron | 25.0% |
| !!! | TATGGTTTATTTTTGAGTTC+AGG | - | chr3.4:93891761-93891780 | MS.gene072969:intron | 25.0% |
| ATTCGCAAAATTGTATTTGC+AGG | - | chr3.4:93892029-93892048 | MS.gene072969:intron | 30.0% | |
| CAAGGACAAGAAGAATAATA+AGG | - | chr3.4:93890358-93890377 | MS.gene072969:CDS | 30.0% | |
| CTGCATCTTACATTATTTGT+AGG | - | chr3.4:93891736-93891755 | MS.gene072969:intron | 30.0% | |
| TCAGCGAAAAAAGATGAAAA+TGG | + | chr3.4:93891880-93891899 | None:intergenic | 30.0% | |
| TTAAGAAAGTTGCTTCTATG+AGG | - | chr3.4:93892252-93892271 | MS.gene072969:CDS | 30.0% | |
| TTCTTCCAAATCAACCAAAT+CGG | - | chr3.4:93890382-93890401 | MS.gene072969:CDS | 30.0% | |
| TTTATGTGCTTACTTTGCTT+TGG | - | chr3.4:93891112-93891131 | MS.gene072969:CDS | 30.0% | |
| ! | ATCCTTCTTTTTCTTCTTCT+TGG | + | chr3.4:93892132-93892151 | None:intergenic | 30.0% |
| !! | ATTTTCAACATCAGAAGTGT+TGG | + | chr3.4:93892192-93892211 | None:intergenic | 30.0% |
| !! | GTTGATGACTATTGAGATTA+AGG | - | chr3.4:93890763-93890782 | MS.gene072969:intron | 30.0% |
| !! | TGTTGTTGTTTATTGATTCC+TGG | - | chr3.4:93890594-93890613 | MS.gene072969:intron | 30.0% |
| !!! | TTTTCAACATCAGAAGTGTT+GGG | + | chr3.4:93892191-93892210 | None:intergenic | 30.0% |
| AAAGAAGGATAAAGCTTCCA+AGG | - | chr3.4:93892142-93892161 | MS.gene072969:CDS | 35.0% | |
| AAATACCTTGGGATTCATCT+TGG | + | chr3.4:93891705-93891724 | None:intergenic | 35.0% | |
| AATAATGTAAGATGCAGCTC+TGG | + | chr3.4:93891733-93891752 | None:intergenic | 35.0% | |
| AATGAAAGCAATGATGGTCA+AGG | - | chr3.4:93891679-93891698 | MS.gene072969:intron | 35.0% | |
| ACACAGAATGAAAGCAATGA+TGG | - | chr3.4:93891673-93891692 | MS.gene072969:intron | 35.0% | |
| CAAAAAGGAAAGGAAGAAGA+AGG | - | chr3.4:93891609-93891628 | MS.gene072969:intron | 35.0% | |
| CAAATCAACCAAATCGGAAT+CGG | - | chr3.4:93890388-93890407 | MS.gene072969:CDS | 35.0% | |
| CTCTGGATAACAAATACCTT+GGG | + | chr3.4:93891716-93891735 | None:intergenic | 35.0% | |
| GTTCTTCTCTTTCTTCTTAG+CGG | + | chr3.4:93892360-93892379 | None:intergenic | 35.0% | |
| TCACTTTATGTGCTTAGCTA+AGG | - | chr3.4:93890643-93890662 | MS.gene072969:intron | 35.0% | |
| TCAGGTATCCTAATAAGAAC+AGG | + | chr3.4:93891143-93891162 | None:intergenic | 35.0% | |
| TGAACAAACCTCAAAATGCT+CGG | + | chr3.4:93890546-93890565 | None:intergenic | 35.0% | |
| TGCCAAGAAGAAGAAAAAGA+AGG | - | chr3.4:93892127-93892146 | MS.gene072969:CDS | 35.0% | |
| TGGTTATGCCTGTTCTTATT+AGG | - | chr3.4:93891132-93891151 | MS.gene072969:CDS | 35.0% | |
| TTCTGATGTTGAAAATGCAG+AGG | - | chr3.4:93892196-93892215 | MS.gene072969:CDS | 35.0% | |
| TTTCTTCTTCTTGGCATTCT+TGG | + | chr3.4:93892123-93892142 | None:intergenic | 35.0% | |
| ! | AGGATAAGAAAGGTGTAGAT+GGG | - | chr3.4:93892060-93892079 | MS.gene072969:intron | 35.0% |
| ! | CTTCTTCTTCCTTTCCTTTT+TGG | + | chr3.4:93891611-93891630 | None:intergenic | 35.0% |
| ! | TTATCTGTGTTTTCTTTGGG+TGG | - | chr3.4:93891359-93891378 | MS.gene072969:intron | 35.0% |
| !! | TATTTTAGATGAAGGTGACG+AGG | - | chr3.4:93891468-93891487 | MS.gene072969:intron | 35.0% |
| !!! | TTTCATCTTTTTTCGCTGAC+AGG | - | chr3.4:93891881-93891900 | MS.gene072969:intron | 35.0% |
| AAGCACATAAAGTGAGCAAC+AGG | + | chr3.4:93890638-93890657 | None:intergenic | 40.0% | |
| AAGGAGGTGAAAGAGTCTAA+CGG | - | chr3.4:93892161-93892180 | MS.gene072969:CDS | 40.0% | |
| ATGCATTCGTTCTACACTAC+TGG | - | chr3.4:93891804-93891823 | MS.gene072969:intron | 40.0% | |
| ATTACAACCAACAACCTGTG+CGG | - | chr3.4:93892381-93892400 | MS.gene072969:CDS | 40.0% | |
| CTAGATCTTTGAGCAAAAGC+AGG | + | chr3.4:93891855-93891874 | None:intergenic | 40.0% | |
| GAACAAACCTCAAAATGCTC+GGG | + | chr3.4:93890545-93890564 | None:intergenic | 40.0% | |
| GAAGAAGAAGAAATCGGACA+AGG | - | chr3.4:93890340-93890359 | MS.gene072969:CDS | 40.0% | |
| GTCAACTCTCCAAAAAGGAA+AGG | - | chr3.4:93891599-93891618 | MS.gene072969:intron | 40.0% | |
| TAGAACGAATGCATGAGCAA+CGG | + | chr3.4:93891798-93891817 | None:intergenic | 40.0% | |
| TCTACACCTTTCTTATCCTG+AGG | + | chr3.4:93892059-93892078 | None:intergenic | 40.0% | |
| TGATGTTGAAAATGCAGAGG+AGG | - | chr3.4:93892199-93892218 | MS.gene072969:CDS | 40.0% | |
| TTGGGTGGTTATTGCTTGAA+TGG | - | chr3.4:93891374-93891393 | MS.gene072969:intron | 40.0% | |
| ! | CAGGATAAGAAAGGTGTAGA+TGG | - | chr3.4:93892059-93892078 | MS.gene072969:intron | 40.0% |
| ! | CTGGTCTTTCTTTCTCTGTT+TGG | - | chr3.4:93891823-93891842 | MS.gene072969:intron | 40.0% |
| ! | GCTCTGGATAACAAATACCT+TGG | + | chr3.4:93891717-93891736 | None:intergenic | 40.0% |
| ! | GGATAAGAAAGGTGTAGATG+GGG | - | chr3.4:93892061-93892080 | MS.gene072969:intron | 40.0% |
| !! | CGATTCCGATTTGGTTGATT+TGG | + | chr3.4:93890390-93890409 | None:intergenic | 40.0% |
| !! | CTTTTTGGAGAGTTGACGTT+CGG | + | chr3.4:93891596-93891615 | None:intergenic | 40.0% |
| !! | GAGGCTCTTTTAGCTGATTT+TGG | - | chr3.4:93891646-93891665 | MS.gene072969:intron | 40.0% |
| ACCGTTGAATGCAACCTCAT+GGG | - | chr3.4:93890436-93890455 | MS.gene072969:CDS | 45.0% | |
| AGCAGCGTCCATTTCTTTAC+TGG | + | chr3.4:93892288-93892307 | None:intergenic | 45.0% | |
| CGAACGTCAACTCTCCAAAA+AGG | - | chr3.4:93891594-93891613 | MS.gene072969:intron | 45.0% | |
| GAAGGAACTTGAAGAGCTTG+AGG | - | chr3.4:93891627-93891646 | MS.gene072969:intron | 45.0% | |
| GAAGGATAAAGCTTCCAAGG+AGG | - | chr3.4:93892145-93892164 | MS.gene072969:CDS | 45.0% | |
| GTGCATGTCAATCTAGATGC+AGG | - | chr3.4:93891975-93891994 | MS.gene072969:intron | 45.0% | |
| GTTAGACTCTTTCACCTCCT+TGG | + | chr3.4:93892162-93892181 | None:intergenic | 45.0% | |
| TCAGCATTCTTCTTGACCTC+AGG | + | chr3.4:93891550-93891569 | None:intergenic | 45.0% | |
| TTCTTCTTGACCTCAGGTTC+AGG | + | chr3.4:93891544-93891563 | None:intergenic | 45.0% | |
| TTTAGATGAAGGTGACGAGG+AGG | - | chr3.4:93891471-93891490 | MS.gene072969:intron | 45.0% | |
| ! | ATCAAGCGCTGCAAAAACGT+TGG | + | chr3.4:93890312-93890331 | None:intergenic | 45.0% |
| ! | GCACAGGTTGTTGGTTGTAA+TGG | + | chr3.4:93892382-93892401 | None:intergenic | 45.0% |
| CAAATCGGAATCGGAATCGC+AGG | - | chr3.4:93890397-93890416 | MS.gene072969:CDS | 50.0% | |
| CAAGGCCAAGATGAATCCCA+AGG | - | chr3.4:93891697-93891716 | MS.gene072969:intron | 50.0% | |
| CACCGTTGAATGCAACCTCA+TGG | - | chr3.4:93890435-93890454 | MS.gene072969:CDS | 50.0% | |
| CACTGTGAAACCTGAACCTG+AGG | - | chr3.4:93891531-93891550 | MS.gene072969:intron | 50.0% | |
| CAGAAGAGATGAGGGTTCGT+TGG | - | chr3.4:93890274-93890293 | MS.gene072969:CDS | 50.0% | |
| CGCTGCAAAAACGTTGGTGT+TGG | + | chr3.4:93890306-93890325 | None:intergenic | 50.0% | |
| CTGCGATTCCGATTCCGATT+TGG | + | chr3.4:93890399-93890418 | None:intergenic | 50.0% | |
| GCCCATGAGGTTGCATTCAA+CGG | + | chr3.4:93890440-93890459 | None:intergenic | 50.0% | |
| GGTGCACCTCAGGATAAGAA+AGG | - | chr3.4:93892050-93892069 | MS.gene072969:intron | 50.0% | |
| GGTGGAAGCAGAAGAGATGA+GGG | - | chr3.4:93890266-93890285 | MS.gene072969:CDS | 50.0% | |
| GGTGTAGATGGGGATGTAGA+TGG | - | chr3.4:93892071-93892090 | MS.gene072969:intron | 50.0% | |
| GGTTGAGGGTCGGAAAATTG+AGG | + | chr3.4:93890509-93890528 | None:intergenic | 50.0% | |
| TCAGGTTTCACAGTGTGCTC+TGG | + | chr3.4:93891526-93891545 | None:intergenic | 50.0% | |
| TGAAGTTCCAGCTGCACCAA+AGG | - | chr3.4:93891567-93891586 | MS.gene072969:intron | 50.0% | |
| TGAGGGTCGGAAAATTGAGG+CGG | + | chr3.4:93890506-93890525 | None:intergenic | 50.0% | |
| TGGTGGAAGCAGAAGAGATG+AGG | - | chr3.4:93890265-93890284 | MS.gene072969:CDS | 50.0% | |
| TGTATTTGCAGGTGCACCTC+AGG | - | chr3.4:93892040-93892059 | MS.gene072969:intron | 50.0% | |
| ! | AATCGGAATCGCAGGCGTTT+TGG | - | chr3.4:93890405-93890424 | MS.gene072969:CDS | 50.0% |
| ! | ATCGGAATCGCAGGCGTTTT+GGG | - | chr3.4:93890406-93890425 | MS.gene072969:CDS | 50.0% |
| ! | GGACAAACCCGAGCATTTTG+AGG | - | chr3.4:93890535-93890554 | MS.gene072969:CDS | 50.0% |
| ! | GTTTGTCCTCACTGGGTTGA+GGG | + | chr3.4:93890523-93890542 | None:intergenic | 50.0% |
| ! | TGTCACATGGGTGCGCATTT+TGG | - | chr3.4:93891226-93891245 | MS.gene072969:intron | 50.0% |
| AGTTCCAGCTGCACCAAAGG+AGG | - | chr3.4:93891570-93891589 | MS.gene072969:intron | 55.0% | |
| AGTTGACGTTCGGCCTCCTT+TGG | + | chr3.4:93891586-93891605 | None:intergenic | 55.0% | |
| ATGCTCGGGTTTGTCCTCAC+TGG | + | chr3.4:93890531-93890550 | None:intergenic | 55.0% | |
| GAGGTTGCATTCAACGGTGC+CGG | + | chr3.4:93890434-93890453 | None:intergenic | 55.0% | |
| GGTTTGTCCTCACTGGGTTG+AGG | + | chr3.4:93890524-93890543 | None:intergenic | 55.0% | |
| GTCATCCACATCAGCCCATG+AGG | + | chr3.4:93890453-93890472 | None:intergenic | 55.0% | |
| GTCGGAAAATTGAGGCGGTG+CGG | + | chr3.4:93890501-93890520 | None:intergenic | 55.0% | |
| TGAAGGTGACGAGGAGGTAG+AGG | - | chr3.4:93891477-93891496 | MS.gene072969:intron | 55.0% | |
| TGCTAGAGCTGCTGCTCAAG+AGG | - | chr3.4:93892307-93892326 | MS.gene072969:CDS | 55.0% | |
| TGCTCGGGTTTGTCCTCACT+GGG | + | chr3.4:93890530-93890549 | None:intergenic | 55.0% | |
| ! | TGCAACCTCATGGGCTGATG+TGG | - | chr3.4:93890445-93890464 | MS.gene072969:CDS | 55.0% |
| AGGCTGCTGCAAGGAACGCA+AGG | - | chr3.4:93892327-93892346 | MS.gene072969:CDS | 60.0% | |
| CTGCTCAAGAGGCTGCTGCA+AGG | - | chr3.4:93892318-93892337 | MS.gene072969:CDS | 60.0% | |
| GGAAAATTGAGGCGGTGCGG+TGG | + | chr3.4:93890498-93890517 | None:intergenic | 60.0% | |
| TTCCGACCCTCAACCCAGTG+AGG | - | chr3.4:93890514-93890533 | MS.gene072969:CDS | 60.0% | |
| ! | GTCCTCACTGGGTTGAGGGT+CGG | + | chr3.4:93890519-93890538 | None:intergenic | 60.0% |
| !! | ATCGCAGGCGTTTTGGGCTC+CGG | - | chr3.4:93890412-93890431 | MS.gene072969:CDS | 60.0% |
| ! | TCGGCCTCCTTTGGTGCAGC+TGG | + | chr3.4:93891577-93891596 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 93890257 | 93892406 | 93890257 | ID=MS.gene072969 |
| chr3.4 | mRNA | 93890257 | 93892406 | 93890257 | ID=MS.gene072969.t1;Parent=MS.gene072969 |
| chr3.4 | exon | 93892107 | 93892406 | 93892107 | ID=MS.gene072969.t1.exon1;Parent=MS.gene072969.t1 |
| chr3.4 | CDS | 93892107 | 93892406 | 93892107 | ID=cds.MS.gene072969.t1;Parent=MS.gene072969.t1 |
| chr3.4 | exon | 93890945 | 93891215 | 93890945 | ID=MS.gene072969.t1.exon2;Parent=MS.gene072969.t1 |
| chr3.4 | CDS | 93890945 | 93891215 | 93890945 | ID=cds.MS.gene072969.t1;Parent=MS.gene072969.t1 |
| chr3.4 | exon | 93890257 | 93890612 | 93890257 | ID=MS.gene072969.t1.exon3;Parent=MS.gene072969.t1 |
| chr3.4 | CDS | 93890257 | 93890612 | 93890257 | ID=cds.MS.gene072969.t1;Parent=MS.gene072969.t1 |
| Gene Sequence |
| Protein sequence |
