Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08131.t1 | XP_003624717.1 | 97.1 | 596 | 10 | 2 | 1 | 596 | 1 | 589 | 0.00E+00 | 1114.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08131.t1 | Q9FKP2 | 50.3 | 577 | 251 | 10 | 15 | 587 | 12 | 556 | 9.2e-139 | 495.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08131.t1 | G7L1K1 | 97.1 | 596 | 10 | 2 | 1 | 596 | 1 | 589 | 0.0e+00 | 1114.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene08131 | 0.80827 | 3.36E-50 | -1.69E-46 |
| MS.gene049159 | MS.gene08131 | 0.827012 | 1.98E-54 | -1.69E-46 |
| MS.gene049368 | MS.gene08131 | 0.811658 | 6.27E-51 | -1.69E-46 |
| MS.gene049801 | MS.gene08131 | 0.810223 | 1.28E-50 | -1.69E-46 |
| MS.gene049983 | MS.gene08131 | 0.804318 | 2.29E-49 | -1.69E-46 |
| MS.gene050361 | MS.gene08131 | 0.826325 | 2.89E-54 | -1.69E-46 |
| MS.gene050654 | MS.gene08131 | 0.807627 | 4.61E-50 | -1.69E-46 |
| MS.gene050737 | MS.gene08131 | 0.804919 | 1.71E-49 | -1.69E-46 |
| MS.gene050759 | MS.gene08131 | 0.815211 | 1.04E-51 | -1.69E-46 |
| MS.gene050762 | MS.gene08131 | 0.829148 | 6.05E-55 | -1.69E-46 |
| MS.gene050763 | MS.gene08131 | 0.829466 | 5.07E-55 | -1.69E-46 |
| MS.gene050826 | MS.gene08131 | 0.86234 | 5.43E-64 | -1.69E-46 |
| MS.gene050941 | MS.gene08131 | 0.828474 | 8.81E-55 | -1.69E-46 |
| MS.gene050962 | MS.gene08131 | 0.80773 | 4.38E-50 | -1.69E-46 |
| MS.gene051066 | MS.gene08131 | 0.807762 | 4.31E-50 | -1.69E-46 |
| MS.gene051180 | MS.gene08131 | 0.816866 | 4.43E-52 | -1.69E-46 |
| MS.gene051198 | MS.gene08131 | 0.802923 | 4.46E-49 | -1.69E-46 |
| MS.gene051800 | MS.gene08131 | 0.839785 | 1.29E-57 | -1.69E-46 |
| MS.gene052426 | MS.gene08131 | 0.803777 | 2.96E-49 | -1.69E-46 |
| MS.gene052674 | MS.gene08131 | 0.850113 | 2.09E-60 | -1.69E-46 |
| MS.gene052675 | MS.gene08131 | 0.851976 | 6.25E-61 | -1.69E-46 |
| MS.gene052677 | MS.gene08131 | 0.853324 | 2.58E-61 | -1.69E-46 |
| MS.gene053008 | MS.gene08131 | 0.800931 | 1.14E-48 | -1.69E-46 |
| MS.gene05350 | MS.gene08131 | 0.820136 | 8.04E-53 | -1.69E-46 |
| MS.gene054236 | MS.gene08131 | 0.818293 | 2.11E-52 | -1.69E-46 |
| MS.gene054379 | MS.gene08131 | 0.833719 | 4.54E-56 | -1.69E-46 |
| MS.gene05458 | MS.gene08131 | 0.800604 | 1.33E-48 | -1.69E-46 |
| MS.gene05468 | MS.gene08131 | 0.807792 | 4.25E-50 | -1.69E-46 |
| MS.gene05510 | MS.gene08131 | 0.806445 | 8.20E-50 | -1.69E-46 |
| MS.gene055310 | MS.gene08131 | 0.817105 | 3.92E-52 | -1.69E-46 |
| MS.gene055701 | MS.gene08131 | 0.831395 | 1.71E-55 | -1.69E-46 |
| MS.gene055864 | MS.gene08131 | 0.811747 | 6.00E-51 | -1.69E-46 |
| MS.gene055926 | MS.gene08131 | 0.924085 | 1.13E-89 | -1.69E-46 |
| MS.gene056181 | MS.gene08131 | 0.800423 | 1.45E-48 | -1.69E-46 |
| MS.gene056480 | MS.gene08131 | 0.816464 | 5.46E-52 | -1.69E-46 |
| MS.gene057915 | MS.gene08131 | 0.800192 | 1.62E-48 | -1.69E-46 |
| MS.gene058010 | MS.gene08131 | 0.812817 | 3.50E-51 | -1.69E-46 |
| MS.gene058081 | MS.gene08131 | 0.843858 | 1.08E-58 | -1.69E-46 |
| MS.gene058146 | MS.gene08131 | 0.805983 | 1.03E-49 | -1.69E-46 |
| MS.gene058223 | MS.gene08131 | -0.800733 | 1.26E-48 | -1.69E-46 |
| MS.gene058360 | MS.gene08131 | 0.806105 | 9.67E-50 | -1.69E-46 |
| MS.gene058595 | MS.gene08131 | 0.807033 | 6.16E-50 | -1.69E-46 |
| MS.gene059161 | MS.gene08131 | 0.801105 | 1.05E-48 | -1.69E-46 |
| MS.gene059283 | MS.gene08131 | 0.840016 | 1.12E-57 | -1.69E-46 |
| MS.gene059439 | MS.gene08131 | 0.816665 | 4.92E-52 | -1.69E-46 |
| MS.gene059842 | MS.gene08131 | 0.817904 | 2.59E-52 | -1.69E-46 |
| MS.gene06010 | MS.gene08131 | 0.814021 | 1.90E-51 | -1.69E-46 |
| MS.gene060296 | MS.gene08131 | 0.834566 | 2.78E-56 | -1.69E-46 |
| MS.gene060322 | MS.gene08131 | 0.810301 | 1.23E-50 | -1.69E-46 |
| MS.gene06052 | MS.gene08131 | 0.844556 | 7.03E-59 | -1.69E-46 |
| MS.gene060802 | MS.gene08131 | 0.871587 | 6.10E-67 | -1.69E-46 |
| MS.gene060803 | MS.gene08131 | 0.834392 | 3.08E-56 | -1.69E-46 |
| MS.gene060850 | MS.gene08131 | 0.81513 | 1.08E-51 | -1.69E-46 |
| MS.gene060851 | MS.gene08131 | 0.819007 | 1.46E-52 | -1.69E-46 |
| MS.gene060852 | MS.gene08131 | 0.813777 | 2.16E-51 | -1.69E-46 |
| MS.gene060870 | MS.gene08131 | 0.824535 | 7.66E-54 | -1.69E-46 |
| MS.gene060932 | MS.gene08131 | 0.818796 | 1.63E-52 | -1.69E-46 |
| MS.gene060998 | MS.gene08131 | 0.859979 | 2.84E-63 | -1.69E-46 |
| MS.gene06121 | MS.gene08131 | 0.833559 | 4.98E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08131.t1 | MTR_7g086690 | 97.148 | 596 | 10 | 2 | 1 | 596 | 1 | 589 | 0.0 | 1161 |
| MS.gene08131.t1 | MTR_6g027570 | 63.590 | 585 | 195 | 7 | 12 | 595 | 10 | 577 | 0.0 | 648 |
| MS.gene08131.t1 | MTR_6g027580 | 48.818 | 592 | 280 | 9 | 5 | 590 | 12 | 586 | 1.11e-161 | 474 |
| MS.gene08131.t1 | MTR_8g021180 | 43.441 | 587 | 297 | 7 | 29 | 587 | 67 | 646 | 3.69e-146 | 437 |
| MS.gene08131.t1 | MTR_7g113730 | 32.063 | 446 | 242 | 10 | 97 | 528 | 59 | 457 | 3.07e-44 | 165 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene08131.t1 | AT5G17860 | 47.874 | 541 | 262 | 4 | 52 | 590 | 45 | 567 | 3.52e-167 | 488 |
| MS.gene08131.t1 | AT5G17850 | 50.258 | 581 | 251 | 10 | 15 | 590 | 12 | 559 | 1.12e-163 | 479 |
| MS.gene08131.t1 | AT5G17850 | 50.258 | 581 | 251 | 10 | 15 | 590 | 12 | 559 | 1.12e-163 | 479 |
| MS.gene08131.t1 | AT5G17860 | 46.753 | 539 | 236 | 3 | 52 | 590 | 45 | 532 | 9.25e-159 | 465 |
| MS.gene08131.t1 | AT1G54115 | 42.857 | 560 | 273 | 7 | 63 | 587 | 91 | 638 | 3.22e-151 | 450 |
| MS.gene08131.t1 | AT3G14070 | 43.716 | 549 | 282 | 7 | 63 | 587 | 92 | 637 | 2.93e-147 | 440 |
| MS.gene08131.t1 | AT1G08960 | 30.237 | 506 | 291 | 13 | 39 | 528 | 26 | 485 | 5.95e-54 | 192 |
Find 102 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTGGAAATTTCCCTTTAT+TGG | 0.076464 | 7.3:+22224751 | MS.gene08131:CDS |
| ACTTGGTTCTCTTCAATTTA+AGG | 0.089846 | 7.3:+22226206 | MS.gene08131:CDS |
| CACAAGGGTTGTTTGATTTA+AGG | 0.133984 | 7.3:-22224685 | None:intergenic |
| TCATCAAGCCTATTAGTTTA+TGG | 0.163372 | 7.3:+22225622 | MS.gene08131:CDS |
| ATTGGTTCTCTTCTATCTTT+TGG | 0.181075 | 7.3:+22224799 | MS.gene08131:CDS |
| AGCCTATTAGTTTATGGAAT+TGG | 0.211692 | 7.3:+22225628 | MS.gene08131:CDS |
| AGTTTATGGAATTGGGTTAT+TGG | 0.214182 | 7.3:+22225636 | MS.gene08131:CDS |
| AATTTAACAATGGCTTTAAA+TGG | 0.222751 | 7.3:+22225895 | MS.gene08131:CDS |
| ACTTCATTTCTCTTATTCTT+AGG | 0.245806 | 7.3:+22226172 | MS.gene08131:CDS |
| GCCAATGTCTCCCACAAATA+TGG | 0.253071 | 7.3:-22226054 | None:intergenic |
| TAGAATGTTACTTTATGTTT+TGG | 0.260934 | 7.3:+22225450 | MS.gene08131:CDS |
| ATTGGAAATTTCCCTTTATT+GGG | 0.271619 | 7.3:+22224752 | MS.gene08131:CDS |
| GGTGTCACTCTTCTCTCTCT+TGG | 0.274952 | 7.3:+22224899 | MS.gene08131:CDS |
| TTATTGGTTGGAATTATATT+AGG | 0.290689 | 7.3:+22225652 | MS.gene08131:CDS |
| AACTAATAGGCTTGATGAAT+TGG | 0.297305 | 7.3:-22225617 | None:intergenic |
| GATGAAGTTGAAAGTGATTA+TGG | 0.331110 | 7.3:+22225268 | MS.gene08131:CDS |
| ATTGGATTCAACACTGTTCT+TGG | 0.331351 | 7.3:+22224983 | MS.gene08131:CDS |
| GCCTATTAGTTTATGGAATT+GGG | 0.332807 | 7.3:+22225629 | MS.gene08131:CDS |
| AAAAGGGTATGACCCAATAA+AGG | 0.334456 | 7.3:-22224764 | None:intergenic |
| AGGCTTTCACCAACTATTGC+TGG | 0.335790 | 7.3:+22224878 | MS.gene08131:CDS |
| GGGGCTCAAATAGCAATTTC+AGG | 0.338302 | 7.3:+22225928 | MS.gene08131:CDS |
| AAAGTTTCTGTTATTATTGT+TGG | 0.338919 | 7.3:-22224588 | None:intergenic |
| ACCCAATTCCATAAACTAAT+AGG | 0.345445 | 7.3:-22225630 | None:intergenic |
| TTTGGTTGTTGGATTGATTT+GGG | 0.349011 | 7.3:+22226080 | MS.gene08131:CDS |
| TTCAATACAGTTGTTGGATT+GGG | 0.352207 | 7.3:+22225970 | MS.gene08131:CDS |
| CTTGTTTCTTTCAAAGGTAA+TGG | 0.356613 | 7.3:+22224950 | MS.gene08131:CDS |
| TTGTTTCTTTCAAAGGTAAT+GGG | 0.357414 | 7.3:+22224951 | MS.gene08131:CDS |
| ATTTCAGCTCAAGAATTAGT+AGG | 0.359746 | 7.3:+22225775 | MS.gene08131:CDS |
| CCTATCTTCAATACAGTTGT+TGG | 0.365242 | 7.3:+22225964 | MS.gene08131:CDS |
| CACAACAACACAAGAAATAA+AGG | 0.365515 | 7.3:-22225014 | None:intergenic |
| GTTTCACTTGGTTTCATATG+TGG | 0.378949 | 7.3:+22225805 | MS.gene08131:CDS |
| GTGTCACTCTTCTCTCTCTT+GGG | 0.389245 | 7.3:+22224900 | MS.gene08131:CDS |
| GGTGTTAATCCTTCAATACT+TGG | 0.389771 | 7.3:+22225826 | MS.gene08131:CDS |
| GATTTAGATGTTCCTCTACT+TGG | 0.392499 | 7.3:+22225319 | MS.gene08131:CDS |
| CTTCAATACAGTTGTTGGAT+TGG | 0.393064 | 7.3:+22225969 | MS.gene08131:CDS |
| TTGTTACCATGGCTAGCTGC+AGG | 0.398686 | 7.3:+22225724 | MS.gene08131:CDS |
| TTTATTTCTTGTGTTGTTGT+GGG | 0.405964 | 7.3:+22225016 | MS.gene08131:CDS |
| TGGATTAACAGTACTTGCTT+GGG | 0.408172 | 7.3:+22225846 | MS.gene08131:CDS |
| TATCTCTTGTTACATCTACT+TGG | 0.418938 | 7.3:+22225995 | MS.gene08131:CDS |
| CTTTATTTCTTGTGTTGTTG+TGG | 0.419235 | 7.3:+22225015 | MS.gene08131:CDS |
| TTTCCTTTGGATTCCATACA+AGG | 0.420611 | 7.3:+22225582 | MS.gene08131:CDS |
| ACTGTTAATCCAAGTATTGA+AGG | 0.428915 | 7.3:-22225835 | None:intergenic |
| CCAACAACTGTATTGAAGAT+AGG | 0.432471 | 7.3:-22225964 | None:intergenic |
| GCAATTTCAGGTTGTTATGC+TGG | 0.432764 | 7.3:+22225940 | MS.gene08131:CDS |
| TTGGATTAACAGTACTTGCT+TGG | 0.435057 | 7.3:+22225845 | MS.gene08131:CDS |
| TATGGAATTGGGTTATTGGT+TGG | 0.441874 | 7.3:+22225640 | MS.gene08131:CDS |
| CCAATAACCATAGAAACAAA+AGG | 0.447694 | 7.3:-22224781 | None:intergenic |
| AATAACAGAAACTTTGTCTC+TGG | 0.459319 | 7.3:+22224596 | MS.gene08131:CDS |
| ACTCTTCTCTCTCTTGGGAA+TGG | 0.465576 | 7.3:+22224905 | MS.gene08131:CDS |
| GCCACACTTGTTTCTTTCAA+AGG | 0.465678 | 7.3:+22224944 | MS.gene08131:CDS |
| TTGTTCAGTGTCTTCATCAA+TGG | 0.469754 | 7.3:+22225133 | MS.gene08131:CDS |
| TGGTGAAAGCCTCAAAACTT+TGG | 0.469895 | 7.3:-22224867 | None:intergenic |
| TCCATATTTGTGGGAGACAT+TGG | 0.474566 | 7.3:+22226053 | MS.gene08131:CDS |
| CTAGGAATCACAATAGATGA+AGG | 0.475246 | 7.3:-22226027 | None:intergenic |
| CTTAGGCTTACTCAAACACT+TGG | 0.475303 | 7.3:+22226189 | MS.gene08131:CDS |
| CAGATTCATAGCAATTCAAA+TGG | 0.477046 | 7.3:+22225364 | MS.gene08131:CDS |
| AAAGGGTATGACCCAATAAA+GGG | 0.479389 | 7.3:-22224763 | None:intergenic |
| GCTTTAAATGGTGGGCCAGA+GGG | 0.482620 | 7.3:+22225907 | MS.gene08131:CDS |
| ACAGGAATTGTTAATCTCCT+AGG | 0.487004 | 7.3:-22225490 | None:intergenic |
| ATCAATGTTGTTGTGGCAGT+TGG | 0.487147 | 7.3:+22225160 | MS.gene08131:CDS |
| ATGAAGCTTGATGCAATGTT+AGG | 0.498376 | 7.3:+22226129 | MS.gene08131:CDS |
| TAACAATGGCTTTAAATGGT+GGG | 0.499024 | 7.3:+22225899 | MS.gene08131:CDS |
| GTCACATCTAGCAAAAGAAA+AGG | 0.510055 | 7.3:+22225223 | MS.gene08131:CDS |
| TTAACAATGGCTTTAAATGG+TGG | 0.512871 | 7.3:+22225898 | MS.gene08131:CDS |
| TCCCACAAATATGGATCTCT+AGG | 0.518786 | 7.3:-22226045 | None:intergenic |
| TTTCAGCTCAAGAATTAGTA+GGG | 0.519227 | 7.3:+22225776 | MS.gene08131:CDS |
| GTAGGGTTGTTAGTTTCACT+TGG | 0.521163 | 7.3:+22225793 | MS.gene08131:CDS |
| GGTAATGGGACACAAGGCAT+TGG | 0.522056 | 7.3:+22224965 | MS.gene08131:CDS |
| TTTAAATGGTGGGCCAGAGG+GGG | 0.522665 | 7.3:+22225909 | MS.gene08131:CDS |
| TGTTACCATGGCTAGCTGCA+GGG | 0.525417 | 7.3:+22225725 | MS.gene08131:CDS |
| TTCCTAGAGATCCATATTTG+TGG | 0.525439 | 7.3:+22226043 | MS.gene08131:CDS |
| CAAAGGAAAGCTAATAAAAG+TGG | 0.528694 | 7.3:-22225568 | None:intergenic |
| GGATTCAACACTGTTCTTGG+TGG | 0.529370 | 7.3:+22224986 | MS.gene08131:CDS |
| TCCTAGAGATCCATATTTGT+GGG | 0.531471 | 7.3:+22226044 | MS.gene08131:CDS |
| CTCTGGTGTCACTGATGATG+AGG | 0.535420 | 7.3:+22224613 | MS.gene08131:CDS |
| GGCTTTAAATGGTGGGCCAG+AGG | 0.537518 | 7.3:+22225906 | MS.gene08131:CDS |
| CAAGAAAATTCTTGTTACCA+TGG | 0.539455 | 7.3:+22225713 | MS.gene08131:CDS |
| ATATGCCTCTTTACCTGCCT+AGG | 0.553833 | 7.3:+22225473 | MS.gene08131:CDS |
| TTGGAGAGATTATCAAGAGA+AGG | 0.561396 | 7.3:-22224848 | None:intergenic |
| CAATAACCATAGAAACAAAA+GGG | 0.563756 | 7.3:-22224780 | None:intergenic |
| GGATTAACAGTACTTGCTTG+GGG | 0.569748 | 7.3:+22225847 | MS.gene08131:CDS |
| CTTTAAATGGTGGGCCAGAG+GGG | 0.577285 | 7.3:+22225908 | MS.gene08131:CDS |
| TATGGTGATTCAAGAAGTCA+TGG | 0.578121 | 7.3:+22225286 | MS.gene08131:CDS |
| TTTCCTTGTATGGAATCCAA+AGG | 0.578564 | 7.3:-22225585 | None:intergenic |
| GAATTGTTAATCTCCTAGGC+AGG | 0.580458 | 7.3:-22225486 | None:intergenic |
| AGAGTGACACCAGCAATAGT+TGG | 0.584420 | 7.3:-22224887 | None:intergenic |
| CTTGATGCAATGTTAGGTGG+AGG | 0.588704 | 7.3:+22226135 | MS.gene08131:CDS |
| AATCTCCTAGGCAGGTAAAG+AGG | 0.593056 | 7.3:-22225478 | None:intergenic |
| TTTAGTGACTAATTTAACAA+TGG | 0.604981 | 7.3:+22225885 | MS.gene08131:CDS |
| TTCAAAGGTAATGGGACACA+AGG | 0.612012 | 7.3:+22224959 | MS.gene08131:CDS |
| ACATAGCCTTGTGTGACACA+AGG | 0.613048 | 7.3:-22224701 | None:intergenic |
| ACAAACCCTGCAGCTAGCCA+TGG | 0.621070 | 7.3:-22225730 | None:intergenic |
| TGGTGAAATCAATGTTGTTG+TGG | 0.630057 | 7.3:+22225153 | MS.gene08131:CDS |
| AAGCTTGATGCAATGTTAGG+TGG | 0.631062 | 7.3:+22226132 | MS.gene08131:CDS |
| GATTCAAGAAGTCATGGCAA+TGG | 0.631409 | 7.3:+22225292 | MS.gene08131:CDS |
| TAGGAATCACAATAGATGAA+GGG | 0.638422 | 7.3:-22226026 | None:intergenic |
| GATTAACAGTACTTGCTTGG+GGG | 0.639126 | 7.3:+22225848 | MS.gene08131:CDS |
| AACAACCCTTGTGTCACACA+AGG | 0.639893 | 7.3:+22224695 | MS.gene08131:CDS |
| CATAGCCTTGTGTGACACAA+GGG | 0.653566 | 7.3:-22224700 | None:intergenic |
| ACCTTTGAAAGAAACAAGTG+TGG | 0.657131 | 7.3:-22224945 | None:intergenic |
| TTCTCCATAAAACCAAGTAG+AGG | 0.658159 | 7.3:-22225331 | None:intergenic |
| GGTTTGTGATGAGTGTGACA+TGG | 0.672642 | 7.3:+22225746 | MS.gene08131:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGTTTCTGTTATTATTGT+TGG | - | chr7.3:22224591-22224610 | None:intergenic | 20.0% |
| !! | TTTAGTGACTAATTTAACAA+TGG | + | chr7.3:22225885-22225904 | MS.gene08131:CDS | 20.0% |
| !!! | AATTTAACAATGGCTTTAAA+TGG | + | chr7.3:22225895-22225914 | MS.gene08131:CDS | 20.0% |
| !!! | TACATTTTCTATTGCAAAAT+TGG | + | chr7.3:22224734-22224753 | MS.gene08131:CDS | 20.0% |
| !!! | TAGAATGTTACTTTATGTTT+TGG | + | chr7.3:22225450-22225469 | MS.gene08131:CDS | 20.0% |
| !!! | TTATTGGTTGGAATTATATT+AGG | + | chr7.3:22225652-22225671 | MS.gene08131:CDS | 20.0% |
| !!! | TTTTGCAATAGAAAATGTAA+AGG | - | chr7.3:22224733-22224752 | None:intergenic | 20.0% |
| ! | AATTGGAAATTTCCCTTTAT+TGG | + | chr7.3:22224751-22224770 | MS.gene08131:CDS | 25.0% |
| ! | ACTTCATTTCTCTTATTCTT+AGG | + | chr7.3:22226172-22226191 | MS.gene08131:CDS | 25.0% |
| ! | ATTGGAAATTTCCCTTTATT+GGG | + | chr7.3:22224752-22224771 | MS.gene08131:CDS | 25.0% |
| ! | CAATAACCATAGAAACAAAA+GGG | - | chr7.3:22224783-22224802 | None:intergenic | 25.0% |
| ! | GAAAAACACAAAACAACAAA+AGG | - | chr7.3:22224514-22224533 | None:intergenic | 25.0% |
| !! | TTGTTTCTTTCAAAGGTAAT+GGG | + | chr7.3:22224951-22224970 | MS.gene08131:CDS | 25.0% |
| !! | TTTATTTCTTGTGTTGTTGT+GGG | + | chr7.3:22225016-22225035 | MS.gene08131:CDS | 25.0% |
| AACTAATAGGCTTGATGAAT+TGG | - | chr7.3:22225620-22225639 | None:intergenic | 30.0% | |
| AATAACAGAAACTTTGTCTC+TGG | + | chr7.3:22224596-22224615 | MS.gene08131:CDS | 30.0% | |
| ACCCAATTCCATAAACTAAT+AGG | - | chr7.3:22225633-22225652 | None:intergenic | 30.0% | |
| AGTTTATGGAATTGGGTTAT+TGG | + | chr7.3:22225636-22225655 | MS.gene08131:CDS | 30.0% | |
| ATTTCAGCTCAAGAATTAGT+AGG | + | chr7.3:22225775-22225794 | MS.gene08131:CDS | 30.0% | |
| CAAAGGAAAGCTAATAAAAG+TGG | - | chr7.3:22225571-22225590 | None:intergenic | 30.0% | |
| CAAGAAAATTCTTGTTACCA+TGG | + | chr7.3:22225713-22225732 | MS.gene08131:CDS | 30.0% | |
| CACAACAACACAAGAAATAA+AGG | - | chr7.3:22225017-22225036 | None:intergenic | 30.0% | |
| CAGATTCATAGCAATTCAAA+TGG | + | chr7.3:22225364-22225383 | MS.gene08131:CDS | 30.0% | |
| CCAATAACCATAGAAACAAA+AGG | - | chr7.3:22224784-22224803 | None:intergenic | 30.0% | |
| GATGAAGTTGAAAGTGATTA+TGG | + | chr7.3:22225268-22225287 | MS.gene08131:CDS | 30.0% | |
| TAGGAATCACAATAGATGAA+GGG | - | chr7.3:22226029-22226048 | None:intergenic | 30.0% | |
| TATCTCTTGTTACATCTACT+TGG | + | chr7.3:22225995-22226014 | MS.gene08131:CDS | 30.0% | |
| TTCAATACAGTTGTTGGATT+GGG | + | chr7.3:22225970-22225989 | MS.gene08131:CDS | 30.0% | |
| TTTCAGCTCAAGAATTAGTA+GGG | + | chr7.3:22225776-22225795 | MS.gene08131:CDS | 30.0% | |
| ! | AATAGCAATTTTCACAACTG+AGG | + | chr7.3:22225678-22225697 | MS.gene08131:CDS | 30.0% |
| ! | ACTTGGTTCTCTTCAATTTA+AGG | + | chr7.3:22226206-22226225 | MS.gene08131:CDS | 30.0% |
| ! | AGCCTATTAGTTTATGGAAT+TGG | + | chr7.3:22225628-22225647 | MS.gene08131:CDS | 30.0% |
| ! | ATAATCTCTCCAAAGTTTTG+AGG | + | chr7.3:22224858-22224877 | MS.gene08131:CDS | 30.0% |
| ! | ATTGAAGATTTTTCACAGCA+AGG | - | chr7.3:22225427-22225446 | None:intergenic | 30.0% |
| ! | CATGGTAACAAGAATTTTCT+TGG | - | chr7.3:22225715-22225734 | None:intergenic | 30.0% |
| ! | CATTTTTCTTCACAAACAAC+AGG | - | chr7.3:22225511-22225530 | None:intergenic | 30.0% |
| ! | CTGTTGTTTGTGAAGAAAAA+TGG | + | chr7.3:22225509-22225528 | MS.gene08131:CDS | 30.0% |
| ! | CTTGTTTCTTTCAAAGGTAA+TGG | + | chr7.3:22224950-22224969 | MS.gene08131:CDS | 30.0% |
| ! | CTTTATTTCTTGTGTTGTTG+TGG | + | chr7.3:22225015-22225034 | MS.gene08131:CDS | 30.0% |
| ! | GCCTATTAGTTTATGGAATT+GGG | + | chr7.3:22225629-22225648 | MS.gene08131:CDS | 30.0% |
| ! | TCATCAAGCCTATTAGTTTA+TGG | + | chr7.3:22225622-22225641 | MS.gene08131:CDS | 30.0% |
| ! | TTTGGTTGTTGGATTGATTT+GGG | + | chr7.3:22226080-22226099 | MS.gene08131:CDS | 30.0% |
| !! | ACTGTTAATCCAAGTATTGA+AGG | - | chr7.3:22225838-22225857 | None:intergenic | 30.0% |
| !! | ATTGGTTCTCTTCTATCTTT+TGG | + | chr7.3:22224799-22224818 | MS.gene08131:CDS | 30.0% |
| !! | TAACAATGGCTTTAAATGGT+GGG | + | chr7.3:22225899-22225918 | MS.gene08131:CDS | 30.0% |
| !! | TGGTTTTTGTTTGATGTATG+TGG | + | chr7.3:22225180-22225199 | MS.gene08131:CDS | 30.0% |
| !! | TTAACAATGGCTTTAAATGG+TGG | + | chr7.3:22225898-22225917 | MS.gene08131:CDS | 30.0% |
| !! | TTTTGGTTGTTGGATTGATT+TGG | + | chr7.3:22226079-22226098 | MS.gene08131:CDS | 30.0% |
| !!! | CACTTTTATTAGCTTTCCTT+TGG | + | chr7.3:22225569-22225588 | MS.gene08131:CDS | 30.0% |
| !!! | CCTTTTGTTTCTATGGTTAT+TGG | + | chr7.3:22224781-22224800 | MS.gene08131:CDS | 30.0% |
| ACAGGAATTGTTAATCTCCT+AGG | - | chr7.3:22225493-22225512 | None:intergenic | 35.0% | |
| ATGAAGCTTGATGCAATGTT+AGG | + | chr7.3:22226129-22226148 | MS.gene08131:CDS | 35.0% | |
| ATTGGATTCAACACTGTTCT+TGG | + | chr7.3:22224983-22225002 | MS.gene08131:CDS | 35.0% | |
| CAAAGTGAAAAACATGCGTT+TGG | - | chr7.3:22224474-22224493 | None:intergenic | 35.0% | |
| CCAACAACTGTATTGAAGAT+AGG | - | chr7.3:22225967-22225986 | None:intergenic | 35.0% | |
| CCTATCTTCAATACAGTTGT+TGG | + | chr7.3:22225964-22225983 | MS.gene08131:CDS | 35.0% | |
| CTAGGAATCACAATAGATGA+AGG | - | chr7.3:22226030-22226049 | None:intergenic | 35.0% | |
| CTTCAATACAGTTGTTGGAT+TGG | + | chr7.3:22225969-22225988 | MS.gene08131:CDS | 35.0% | |
| GATTTAGATGTTCCTCTACT+TGG | + | chr7.3:22225319-22225338 | MS.gene08131:CDS | 35.0% | |
| GGTGTTAATCCTTCAATACT+TGG | + | chr7.3:22225826-22225845 | MS.gene08131:CDS | 35.0% | |
| GTCACATCTAGCAAAAGAAA+AGG | + | chr7.3:22225223-22225242 | MS.gene08131:CDS | 35.0% | |
| GTTTCACTTGGTTTCATATG+TGG | + | chr7.3:22225805-22225824 | MS.gene08131:CDS | 35.0% | |
| TATGGAATTGGGTTATTGGT+TGG | + | chr7.3:22225640-22225659 | MS.gene08131:CDS | 35.0% | |
| TATGGTGATTCAAGAAGTCA+TGG | + | chr7.3:22225286-22225305 | MS.gene08131:CDS | 35.0% | |
| TCCTAGAGATCCATATTTGT+GGG | + | chr7.3:22226044-22226063 | MS.gene08131:CDS | 35.0% | |
| TCTGAGAAAAACGTGTTCAT+AGG | - | chr7.3:22224555-22224574 | None:intergenic | 35.0% | |
| TGGATTAACAGTACTTGCTT+GGG | + | chr7.3:22225846-22225865 | MS.gene08131:CDS | 35.0% | |
| TGGTGAAATCAATGTTGTTG+TGG | + | chr7.3:22225153-22225172 | MS.gene08131:CDS | 35.0% | |
| TTCCTAGAGATCCATATTTG+TGG | + | chr7.3:22226043-22226062 | MS.gene08131:CDS | 35.0% | |
| TTCTCCATAAAACCAAGTAG+AGG | - | chr7.3:22225334-22225353 | None:intergenic | 35.0% | |
| TTGGAGAGATTATCAAGAGA+AGG | - | chr7.3:22224851-22224870 | None:intergenic | 35.0% | |
| TTGGATTAACAGTACTTGCT+TGG | + | chr7.3:22225845-22225864 | MS.gene08131:CDS | 35.0% | |
| TTGTTCAGTGTCTTCATCAA+TGG | + | chr7.3:22225133-22225152 | MS.gene08131:CDS | 35.0% | |
| TTTCCTTGTATGGAATCCAA+AGG | - | chr7.3:22225588-22225607 | None:intergenic | 35.0% | |
| TTTCCTTTGGATTCCATACA+AGG | + | chr7.3:22225582-22225601 | MS.gene08131:CDS | 35.0% | |
| ! | AAAAGGGTATGACCCAATAA+AGG | - | chr7.3:22224767-22224786 | None:intergenic | 35.0% |
| ! | AAAGGGTATGACCCAATAAA+GGG | - | chr7.3:22224766-22224785 | None:intergenic | 35.0% |
| ! | ACCTTTGAAAGAAACAAGTG+TGG | - | chr7.3:22224948-22224967 | None:intergenic | 35.0% |
| ! | CACAAGGGTTGTTTGATTTA+AGG | - | chr7.3:22224688-22224707 | None:intergenic | 35.0% |
| ! | GAGAAACTGTTTTCCTTGTA+TGG | - | chr7.3:22225598-22225617 | None:intergenic | 35.0% |
| ! | GGTAACAAGAATTTTCTTGG+AGG | - | chr7.3:22225712-22225731 | None:intergenic | 35.0% |
| !!! | ACATTGGCATTTTTGGTTGT+TGG | + | chr7.3:22226069-22226088 | MS.gene08131:CDS | 35.0% |
| !!! | CTACTTGGTTTTATGGAGAA+GGG | + | chr7.3:22225334-22225353 | MS.gene08131:CDS | 35.0% |
| !!! | GTCATACCCTTTTGTTTCTA+TGG | + | chr7.3:22224774-22224793 | MS.gene08131:CDS | 35.0% |
| !!! | TCTACTTGGTTTTATGGAGA+AGG | + | chr7.3:22225333-22225352 | MS.gene08131:CDS | 35.0% |
| !!! | TGTTCCTCTACTTGGTTTTA+TGG | + | chr7.3:22225327-22225346 | MS.gene08131:CDS | 35.0% |
| AAGCTTGATGCAATGTTAGG+TGG | + | chr7.3:22226132-22226151 | MS.gene08131:CDS | 40.0% | |
| ATCAATGTTGTTGTGGCAGT+TGG | + | chr7.3:22225160-22225179 | MS.gene08131:CDS | 40.0% | |
| CTTAGGCTTACTCAAACACT+TGG | + | chr7.3:22226189-22226208 | MS.gene08131:CDS | 40.0% | |
| GAATTGTTAATCTCCTAGGC+AGG | - | chr7.3:22225489-22225508 | None:intergenic | 40.0% | |
| GATTAACAGTACTTGCTTGG+GGG | + | chr7.3:22225848-22225867 | MS.gene08131:CDS | 40.0% | |
| GATTCAAGAAGTCATGGCAA+TGG | + | chr7.3:22225292-22225311 | MS.gene08131:CDS | 40.0% | |
| GGATTAACAGTACTTGCTTG+GGG | + | chr7.3:22225847-22225866 | MS.gene08131:CDS | 40.0% | |
| TCCATATTTGTGGGAGACAT+TGG | + | chr7.3:22226053-22226072 | MS.gene08131:CDS | 40.0% | |
| TCCCACAAATATGGATCTCT+AGG | - | chr7.3:22226048-22226067 | None:intergenic | 40.0% | |
| TGGTGAAAGCCTCAAAACTT+TGG | - | chr7.3:22224870-22224889 | None:intergenic | 40.0% | |
| ! | GCCACACTTGTTTCTTTCAA+AGG | + | chr7.3:22224944-22224963 | MS.gene08131:CDS | 40.0% |
| ! | GTAGGGTTGTTAGTTTCACT+TGG | + | chr7.3:22225793-22225812 | MS.gene08131:CDS | 40.0% |
| !! | GCAATTTCAGGTTGTTATGC+TGG | + | chr7.3:22225940-22225959 | MS.gene08131:CDS | 40.0% |
| !! | TTCAAAGGTAATGGGACACA+AGG | + | chr7.3:22224959-22224978 | MS.gene08131:CDS | 40.0% |
| !!! | TGGTTTTATGGAGAAGGGAA+TGG | + | chr7.3:22225339-22225358 | MS.gene08131:CDS | 40.0% |
| AACAACCCTTGTGTCACACA+AGG | + | chr7.3:22224695-22224714 | MS.gene08131:CDS | 45.0% | |
| AATCTCCTAGGCAGGTAAAG+AGG | - | chr7.3:22225481-22225500 | None:intergenic | 45.0% | |
| ACTCTTCTCTCTCTTGGGAA+TGG | + | chr7.3:22224905-22224924 | MS.gene08131:CDS | 45.0% | |
| AGAGTGACACCAGCAATAGT+TGG | - | chr7.3:22224890-22224909 | None:intergenic | 45.0% | |
| AGGCTTTCACCAACTATTGC+TGG | + | chr7.3:22224878-22224897 | MS.gene08131:CDS | 45.0% | |
| ATATGCCTCTTTACCTGCCT+AGG | + | chr7.3:22225473-22225492 | MS.gene08131:CDS | 45.0% | |
| CTTGATGCAATGTTAGGTGG+AGG | + | chr7.3:22226135-22226154 | MS.gene08131:CDS | 45.0% | |
| CTTGCTTGGGGGAATTCAAT+TGG | + | chr7.3:22225859-22225878 | MS.gene08131:CDS | 45.0% | |
| GCCAATGTCTCCCACAAATA+TGG | - | chr7.3:22226057-22226076 | None:intergenic | 45.0% | |
| GGATTCAACACTGTTCTTGG+TGG | + | chr7.3:22224986-22225005 | MS.gene08131:CDS | 45.0% | |
| GGGGCTCAAATAGCAATTTC+AGG | + | chr7.3:22225928-22225947 | MS.gene08131:CDS | 45.0% | |
| GGTTTGTGATGAGTGTGACA+TGG | + | chr7.3:22225746-22225765 | MS.gene08131:CDS | 45.0% | |
| ! | GTGGGAGACATTGGCATTTT+TGG | + | chr7.3:22226062-22226081 | MS.gene08131:CDS | 45.0% |
| ! | GTGTCACTCTTCTCTCTCTT+GGG | + | chr7.3:22224900-22224919 | MS.gene08131:CDS | 45.0% |
| !! | ACATAGCCTTGTGTGACACA+AGG | - | chr7.3:22224704-22224723 | None:intergenic | 45.0% |
| !! | CATAGCCTTGTGTGACACAA+GGG | - | chr7.3:22224703-22224722 | None:intergenic | 45.0% |
| ! | TGTTACCATGGCTAGCTGCA+GGG | + | chr7.3:22225725-22225744 | MS.gene08131:CDS | 50.0% |
| ! | TTGTTACCATGGCTAGCTGC+AGG | + | chr7.3:22225724-22225743 | MS.gene08131:CDS | 50.0% |
| !! | ATTGCTATTTGAGCCCCCTC+TGG | - | chr7.3:22225925-22225944 | None:intergenic | 50.0% |
| !! | CTCTGGTGTCACTGATGATG+AGG | + | chr7.3:22224613-22224632 | MS.gene08131:CDS | 50.0% |
| !! | CTTTAAATGGTGGGCCAGAG+GGG | + | chr7.3:22225908-22225927 | MS.gene08131:CDS | 50.0% |
| !! | GCTTTAAATGGTGGGCCAGA+GGG | + | chr7.3:22225907-22225926 | MS.gene08131:CDS | 50.0% |
| !! | GGTAATGGGACACAAGGCAT+TGG | + | chr7.3:22224965-22224984 | MS.gene08131:CDS | 50.0% |
| !! | GGTGTCACTCTTCTCTCTCT+TGG | + | chr7.3:22224899-22224918 | MS.gene08131:CDS | 50.0% |
| !! | TTTAAATGGTGGGCCAGAGG+GGG | + | chr7.3:22225909-22225928 | MS.gene08131:CDS | 50.0% |
| ACAAACCCTGCAGCTAGCCA+TGG | - | chr7.3:22225733-22225752 | None:intergenic | 55.0% | |
| !! | GGCTTTAAATGGTGGGCCAG+AGG | + | chr7.3:22225906-22225925 | MS.gene08131:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 22224452 | 22226242 | 22224452 | ID=MS.gene08131 |
| chr7.3 | mRNA | 22224452 | 22226242 | 22224452 | ID=MS.gene08131.t1;Parent=MS.gene08131 |
| chr7.3 | exon | 22224452 | 22226242 | 22224452 | ID=MS.gene08131.t1.exon1;Parent=MS.gene08131.t1 |
| chr7.3 | CDS | 22224452 | 22226242 | 22224452 | ID=cds.MS.gene08131.t1;Parent=MS.gene08131.t1 |
| Gene Sequence |
| Protein sequence |
