AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene20866


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene20866.t1 MTR_1g086840 92.884 267 12 2 1 267 1 260 0.0 504
MS.gene20866.t1 MTR_1g086840 82.969 229 29 4 1 228 1 220 5.84e-131 370
MS.gene20866.t1 MTR_7g095920 36.364 198 119 4 50 246 46 237 2.48e-37 132
MS.gene20866.t1 MTR_1g471050 36.082 194 117 4 54 246 53 240 3.55e-35 127
MS.gene20866.t1 MTR_3g080840 32.906 234 128 7 49 266 43 263 1.05e-34 126
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene20866.t1 AT4G01995 63.559 236 76 2 21 256 27 252 2.73e-101 296
MS.gene20866.t1 AT4G01995 68.900 209 63 1 48 256 15 221 3.39e-100 292
MS.gene20866.t1 AT4G01995 58.065 155 57 1 21 175 27 173 5.41e-52 168
MS.gene20866.t1 AT1G64680 36.098 205 110 6 51 243 36 231 4.70e-39 137
MS.gene20866.t1 AT1G03055 35.071 211 119 6 46 246 52 254 4.67e-36 129
MS.gene20866.t1 AT1G64680 34.463 177 95 6 51 215 36 203 3.29e-28 107

Find 82 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCAGTCACACCTGTGTTTC+TGG 0.163795 1.3:-61495541 None:intergenic
ATTCCAACGCTTTGTTCTAA+TGG 0.234706 1.3:+61493142 MS.gene20866:CDS
GCAGAAGATGCAAACCGTTT+TGG 0.270080 1.3:-61493227 None:intergenic
CAATTTGTTTCGCACCAAAT+TGG 0.279978 1.3:+61493369 MS.gene20866:CDS
TTTGTTTCCTCCATTCCTTT+TGG 0.289746 1.3:+61494514 MS.gene20866:CDS
GAAAATTACCGTAGCTTCTA+TGG 0.292895 1.3:-61493603 None:intergenic
TTAGGTTACCTGAACCAATT+TGG 0.303056 1.3:-61493383 None:intergenic
TTCAGGACGGTGTCATCTTC+AGG 0.308272 1.3:-61495468 None:intergenic
GACCTTCTTCAAGGATCATA+TGG 0.328100 1.3:+61495281 MS.gene20866:intron
TTAAATTTGCAGTTCAAATT+CGG 0.342169 1.3:+61495429 MS.gene20866:intron
AACCTGTGTTGGAAACTTAC+AGG 0.345038 1.3:-61494963 None:intergenic
GTCTACAGAATTGACTTTGC+AGG 0.348660 1.3:-61494755 None:intergenic
GTTTCGCACCAAATTGGTTC+AGG 0.358197 1.3:+61493375 MS.gene20866:CDS
TCTTCTTCTTCATCTTCATC+AGG 0.361445 1.3:+61493202 MS.gene20866:CDS
TTAGAACAAAGCGTTGGAAT+TGG 0.365725 1.3:-61493139 None:intergenic
TGTCGAAAGATGCAAGTATC+TGG 0.367315 1.3:+61494907 MS.gene20866:CDS
AAATGCTTCCCTACGAAGAT+TGG 0.373694 1.3:+61495515 MS.gene20866:CDS
CTTCCAAGCAAGGCTCCTTC+AGG 0.383691 1.3:-61495485 None:intergenic
TTAAATTTAGACCTTCTTCA+AGG 0.416665 1.3:+61495272 MS.gene20866:intron
GCAACTTTGCCTCCACCTAT+AGG 0.420034 1.3:-61494560 None:intergenic
ACAGCTATAATCAGCAAAGT+TGG 0.429629 1.3:-61495325 None:intergenic
TCAAAGAGTGAATACAAGCC+TGG 0.439154 1.3:+61493325 MS.gene20866:CDS
AGGCAAAGTTGCCGCTATAA+TGG 0.445748 1.3:+61494571 MS.gene20866:CDS
AATCTTCGTAGGGAAGCATT+TGG 0.450960 1.3:-61495513 None:intergenic
CTTTGCTGATTATAGCTGTC+AGG 0.455452 1.3:+61495329 MS.gene20866:CDS
CGTCCTGAAGGAGCCTTGCT+TGG 0.459856 1.3:+61495482 MS.gene20866:CDS
TCAATTAGTCCGTCATATCC+AGG 0.477685 1.3:-61493536 None:intergenic
AAAATGCTCATAGCTCCTAT+AGG 0.484909 1.3:+61494545 MS.gene20866:CDS
GATGGAACCTCATGGAATAG+TGG 0.485415 1.3:+61494784 MS.gene20866:CDS
TTACTGCACTTACTTGTCAA+TGG 0.489234 1.3:+61494722 MS.gene20866:CDS
ACCTTCTTCAAGGATCATAT+GGG 0.499420 1.3:+61495282 MS.gene20866:CDS
CAGCTATAATCAGCAAAGTT+GGG 0.500940 1.3:-61495324 None:intergenic
CGGTGTCATCTTCAGGAAGT+GGG 0.502536 1.3:-61495461 None:intergenic
TACCGTAGCTTCTATGGTAT+CGG 0.506593 1.3:-61493597 None:intergenic
ATCTTCATCAGGACCCAAAA+CGG 0.508312 1.3:+61493213 MS.gene20866:CDS
ATGGAACCTCATGGAATAGT+GGG 0.508469 1.3:+61494785 MS.gene20866:CDS
GGATGGGACTCGAAGAAACC+TGG 0.509195 1.3:+61493518 MS.gene20866:CDS
CAAAGAGTGAATACAAGCCT+GGG 0.509583 1.3:+61493326 MS.gene20866:CDS
ACGGTGTCATCTTCAGGAAG+TGG 0.512090 1.3:-61495462 None:intergenic
TTTGGACATGCTTCCAAGCA+AGG 0.516931 1.3:-61495495 None:intergenic
AAGGCGCTAAGTATTGTTGT+TGG 0.517773 1.3:+61493109 MS.gene20866:CDS
ATATGTTCATGTCTTTGGGC+AGG 0.520060 1.3:-61495562 None:intergenic
GAAGAATCACTAACCTGTGT+TGG 0.521242 1.3:-61494974 None:intergenic
ACTTACTTGTCAATGGCTCA+TGG 0.525178 1.3:+61494729 MS.gene20866:CDS
TCTACAGAATTGACTTTGCA+GGG 0.526670 1.3:-61494754 None:intergenic
GCGCTAAGTATTGTTGTTGG+CGG 0.530949 1.3:+61493112 MS.gene20866:CDS
CTTACTTGTCAATGGCTCAT+GGG 0.539633 1.3:+61494730 MS.gene20866:CDS
CTCCGATACCATAGAAGCTA+CGG 0.540098 1.3:+61493595 MS.gene20866:CDS
TATGGGAGTTCCATTACTCA+TGG 0.540166 1.3:+61495299 MS.gene20866:CDS
TACTATAACAGGAAGTGGGA+TGG 0.548952 1.3:+61493501 MS.gene20866:intron
TTATAGAGCTCCAAAAGGAA+TGG 0.549533 1.3:-61494524 None:intergenic
ATTTGGTGCGAAACAAATTG+AGG 0.552877 1.3:-61493366 None:intergenic
TCCCATATGATCCTTGAAGA+AGG 0.562632 1.3:-61495283 None:intergenic
CTCATAGCTCCTATAGGTGG+AGG 0.565279 1.3:+61494551 MS.gene20866:CDS
TAGTGCCTTTCATCATTAGA+CGG 0.569097 1.3:-61493568 None:intergenic
ATTCCATTAGAACAAAGCGT+TGG 0.570606 1.3:-61493145 None:intergenic
AAAATACTATAACAGGAAGT+GGG 0.571265 1.3:+61493497 MS.gene20866:intron
AAGTTGGGCTCCATGAGTAA+TGG 0.572536 1.3:-61495309 None:intergenic
TCGAAGAAACCTGGATATGA+CGG 0.573061 1.3:+61493527 MS.gene20866:CDS
ACTATAACAGGAAGTGGGAT+GGG 0.573427 1.3:+61493502 MS.gene20866:intron
TGAAGATGACACCGTCCTGA+AGG 0.575565 1.3:+61495470 MS.gene20866:CDS
TCTGGAAGCCAATCTTCGTA+GGG 0.579827 1.3:-61495523 None:intergenic
ACCTATCAGATGGAACCTCA+TGG 0.586052 1.3:+61494776 MS.gene20866:CDS
AACAAATCATCAATAACCCC+AGG 0.586570 1.3:-61493343 None:intergenic
TCCATGAGGTTCCATCTGAT+AGG 0.590896 1.3:-61494777 None:intergenic
CACCTGTAAGTTTCCAACAC+AGG 0.597620 1.3:+61494961 MS.gene20866:CDS
TTCTGGAAGCCAATCTTCGT+AGG 0.598210 1.3:-61495524 None:intergenic
AAAGTTGCCGCTATAATGGT+TGG 0.601706 1.3:+61494575 MS.gene20866:CDS
CTGGAGGAAAGCAAGTGTGT+TGG 0.610904 1.3:+61494926 MS.gene20866:CDS
AATTCTGTAGACCTATCAGA+TGG 0.614406 1.3:+61494766 MS.gene20866:CDS
TAGAGCTCCAAAAGGAATGG+AGG 0.615600 1.3:-61494521 None:intergenic
GCTAACCGTCTAATGATGAA+AGG 0.626704 1.3:+61493563 MS.gene20866:CDS
ATGCTCATAGCTCCTATAGG+TGG 0.633669 1.3:+61494548 MS.gene20866:CDS
CGAAAGATGCAAGTATCTGG+AGG 0.640761 1.3:+61494910 MS.gene20866:CDS
GGTGTCATCTTCAGGAAGTG+GGG 0.642463 1.3:-61495460 None:intergenic
CAAGCAAGGCTCCTTCAGGA+CGG 0.652728 1.3:-61495481 None:intergenic
GTGTCATCTTCAGGAAGTGG+GGG 0.656581 1.3:-61495459 None:intergenic
AGATTGGCTTCCAGAAACAC+AGG 0.677702 1.3:+61495531 MS.gene20866:CDS
AGACTCACCAACCATTATAG+CGG 0.701172 1.3:-61494582 None:intergenic
TGGAACCTCATGGAATAGTG+GGG 0.705163 1.3:+61494786 MS.gene20866:CDS
AAAGAGTGAATACAAGCCTG+GGG 0.716715 1.3:+61493327 MS.gene20866:CDS
GATCACCCCACTATTCCATG+AGG 0.750720 1.3:-61494791 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACTTAAATAAATGTTTA+AGG - chr1.3:61494692-61494711 None:intergenic 10.0%
!! ATATATGAATATGATTAATG+TGG + chr1.3:61493458-61493477 MS.gene20866:intron 15.0%
!! AAAGCTATAAATAAGTTAAC+TGG - chr1.3:61493418-61493437 None:intergenic 20.0%
!! AAATATTACGTATTCTCTTA+TGG + chr1.3:61495356-61495375 MS.gene20866:intron 20.0%
!! AAATCCTAAGATGATAAAAA+TGG + chr1.3:61494047-61494066 MS.gene20866:intron 20.0%
!! AAGTTTAGAAGAATCATATA+AGG - chr1.3:61494425-61494444 None:intergenic 20.0%
!! AGATTATCAAACTGTTTATA+AGG + chr1.3:61493812-61493831 MS.gene20866:intron 20.0%
!! ATTTGAACTGCAAATTTAAA+AGG - chr1.3:61495428-61495447 None:intergenic 20.0%
!! GAATAAGTAACATTGTATTA+CGG - chr1.3:61494327-61494346 None:intergenic 20.0%
!! TATAAATAAGTTAACTGGAA+GGG - chr1.3:61493413-61493432 None:intergenic 20.0%
!! TATGTACTATAAAATGTTGT+AGG + chr1.3:61494880-61494899 MS.gene20866:intron 20.0%
!! TTAAATTTGCAGTTCAAATT+CGG + chr1.3:61495429-61495448 MS.gene20866:intron 20.0%
!!! AGATAAGAATTTGATGTTTT+TGG + chr1.3:61494109-61494128 MS.gene20866:intron 20.0%
!!! ATAAGAATTTGATGTTTTTG+GGG + chr1.3:61494111-61494130 MS.gene20866:intron 20.0%
!!! GATAAGAATTTGATGTTTTT+GGG + chr1.3:61494110-61494129 MS.gene20866:intron 20.0%
!!! GTTTTGATTGAATTTGAATT+AGG + chr1.3:61493285-61493304 MS.gene20866:intron 20.0%
!!! TAATACAATGTTACTTATTC+TGG + chr1.3:61494327-61494346 MS.gene20866:intron 20.0%
!!! TTATTTAAGTTTTGAAGCAA+GGG + chr1.3:61494699-61494718 MS.gene20866:intron 20.0%
!!! TTTATTTAAGTTTTGAAGCA+AGG + chr1.3:61494698-61494717 MS.gene20866:intron 20.0%
!!! TTTTAGAAAGAAAGAAAAGA+GGG + chr1.3:61493435-61493454 MS.gene20866:intron 20.0%
! AAAATACTATAACAGGAAGT+GGG + chr1.3:61493497-61493516 MS.gene20866:intron 25.0%
! ATAAATAAGTTAACTGGAAG+GGG - chr1.3:61493412-61493431 None:intergenic 25.0%
! ATACTAACATGAAAAAACCA+AGG - chr1.3:61495184-61495203 None:intergenic 25.0%
! ATGAATATGATTAATGTGGT+GGG + chr1.3:61493462-61493481 MS.gene20866:intron 25.0%
! CTATAAATAAGTTAACTGGA+AGG - chr1.3:61493414-61493433 None:intergenic 25.0%
! GAGTATGAAAATACTATAAC+AGG + chr1.3:61493490-61493509 MS.gene20866:intron 25.0%
! GAGTTCAAATTTATATGATG+AGG + chr1.3:61495378-61495397 MS.gene20866:intron 25.0%
! TACTAACATGAAAAAACCAA+GGG - chr1.3:61495183-61495202 None:intergenic 25.0%
! TAGTTATCTTTGCGAAAAAA+TGG + chr1.3:61494226-61494245 MS.gene20866:intron 25.0%
! TATGAATATGATTAATGTGG+TGG + chr1.3:61493461-61493480 MS.gene20866:intron 25.0%
! TCATCTTGTATTATTGAAAG+TGG + chr1.3:61494855-61494874 MS.gene20866:intron 25.0%
! TGATTCTTCTAAACTTTGAA+TGG + chr1.3:61494429-61494448 MS.gene20866:intron 25.0%
! TGATTGAATTTGAATTAGGT+GGG + chr1.3:61493289-61493308 MS.gene20866:intron 25.0%
! TTAAATTTAGACCTTCTTCA+AGG + chr1.3:61495272-61495291 MS.gene20866:intron 25.0%
! TTGATTGAATTTGAATTAGG+TGG + chr1.3:61493288-61493307 MS.gene20866:intron 25.0%
!! TAAATTTTGTGTGACTGTTT+AGG + chr1.3:61493774-61493793 MS.gene20866:intron 25.0%
!!! ATATAAACCTTTTGAAACCA+TGG - chr1.3:61493696-61493715 None:intergenic 25.0%
!!! CTTTTAGAAAGAAAGAAAAG+AGG + chr1.3:61493434-61493453 MS.gene20866:intron 25.0%
!!! GTTTCCATTTTTATCATCTT+AGG - chr1.3:61494054-61494073 None:intergenic 25.0%
!!! TTTGAAGTTGTTGCATTTTA+TGG + chr1.3:61495228-61495247 MS.gene20866:intron 25.0%
AGCTTTACTTTCTCTTTCTA+AGG - chr1.3:61494003-61494022 None:intergenic 30.0%
GAAAATACTATAACAGGAAG+TGG + chr1.3:61493496-61493515 MS.gene20866:intron 30.0%
TCAGTTAAAGACAAATCGTT+TGG - chr1.3:61495135-61495154 None:intergenic 30.0%
! AAGTTGTTGCATTTTATGGA+TGG + chr1.3:61495232-61495251 MS.gene20866:intron 30.0%
! GAAAGAGAAAGTAAAGCTTT+TGG + chr1.3:61494005-61494024 MS.gene20866:intron 30.0%
!! TGAAGTGGATTGGAATAAAA+CGG - chr1.3:61494275-61494294 None:intergenic 30.0%
AAAATGCTCATAGCTCCTAT+AGG + chr1.3:61494545-61494564 MS.gene20866:CDS 35.0%
AAATGCAACAACTTCAAAGC+TGG - chr1.3:61495226-61495245 None:intergenic 35.0%
AACAAATCATCAATAACCCC+AGG - chr1.3:61493346-61493365 None:intergenic 35.0%
AACTCTCAAAACCAAAATGG+TGG - chr1.3:61494154-61494173 None:intergenic 35.0%
AATTCTGTAGACCTATCAGA+TGG + chr1.3:61494766-61494785 MS.gene20866:CDS 35.0%
ACAGCTATAATCAGCAAAGT+TGG - chr1.3:61495328-61495347 None:intergenic 35.0%
ACATGAAAAAACCAAGGGAT+CGG - chr1.3:61495178-61495197 None:intergenic 35.0%
ACATTGTATTACGGTATGTC+TGG - chr1.3:61494318-61494337 None:intergenic 35.0%
ACCAAAACCATGGTTTCAAA+AGG + chr1.3:61493686-61493705 MS.gene20866:intron 35.0%
ACCTTCTTCAAGGATCATAT+GGG + chr1.3:61495282-61495301 MS.gene20866:CDS 35.0%
ATTCCATTAGAACAAAGCGT+TGG - chr1.3:61493148-61493167 None:intergenic 35.0%
CAGCTATAATCAGCAAAGTT+GGG - chr1.3:61495327-61495346 None:intergenic 35.0%
CCAAACTCTCAAAACCAAAA+TGG - chr1.3:61494157-61494176 None:intergenic 35.0%
GAAAATTACCGTAGCTTCTA+TGG - chr1.3:61493606-61493625 None:intergenic 35.0%
GGTATAGATCAGGTATGTTT+GGG + chr1.3:61494175-61494194 MS.gene20866:intron 35.0%
TAGAGTTGAATGAAGTGGAT+TGG - chr1.3:61494285-61494304 None:intergenic 35.0%
TAGTGCCTTTCATCATTAGA+CGG - chr1.3:61493571-61493590 None:intergenic 35.0%
TCATAATAAGCACTTGTGAG+CGG + chr1.3:61493956-61493975 MS.gene20866:intron 35.0%
TCTTCTTCTTCATCTTCATC+AGG + chr1.3:61493202-61493221 MS.gene20866:CDS 35.0%
TGGTATAGAGTTGAATGAAG+TGG - chr1.3:61494290-61494309 None:intergenic 35.0%
TGGTATAGATCAGGTATGTT+TGG + chr1.3:61494174-61494193 MS.gene20866:intron 35.0%
TTACTGCACTTACTTGTCAA+TGG + chr1.3:61494722-61494741 MS.gene20866:CDS 35.0%
TTAGGTTACCTGAACCAATT+TGG - chr1.3:61493386-61493405 None:intergenic 35.0%
TTATAGAGCTCCAAAAGGAA+TGG - chr1.3:61494527-61494546 None:intergenic 35.0%
TTCCTTACAAACCAAAACCA+TGG + chr1.3:61493676-61493695 MS.gene20866:intron 35.0%
TTGAGAGTTTGGTATAGATC+AGG + chr1.3:61494165-61494184 MS.gene20866:intron 35.0%
TTTCAGTCAGGATTTGAACT+CGG + chr1.3:61495103-61495122 MS.gene20866:intron 35.0%
! AATATGATTAATGTGGTGGG+TGG + chr1.3:61493465-61493484 MS.gene20866:intron 35.0%
! ATTCCAACGCTTTGTTCTAA+TGG + chr1.3:61493142-61493161 MS.gene20866:CDS 35.0%
! CAATTTGTTTCGCACCAAAT+TGG + chr1.3:61493369-61493388 MS.gene20866:CDS 35.0%
! GCATTTTATAGAGCTCCAAA+AGG - chr1.3:61494532-61494551 None:intergenic 35.0%
! TAGCACTTATGTCTTGTTAC+AGG + chr1.3:61494475-61494494 MS.gene20866:intron 35.0%
! TCTACAGAATTGACTTTGCA+GGG - chr1.3:61494757-61494776 None:intergenic 35.0%
! TGTTACAGGTACGAATTTTG+AGG + chr1.3:61494489-61494508 MS.gene20866:intron 35.0%
! TTTGTTTCCTCCATTCCTTT+TGG + chr1.3:61494514-61494533 MS.gene20866:CDS 35.0%
!! AGCTGTTTTCATAAGCTATC+TGG - chr1.3:61493865-61493884 None:intergenic 35.0%
!! ATTTGGTGCGAAACAAATTG+AGG - chr1.3:61493369-61493388 None:intergenic 35.0%
!! TTAGAACAAAGCGTTGGAAT+TGG - chr1.3:61493142-61493161 None:intergenic 35.0%
!!! AACCATGGTTTTGGTTTGTA+AGG - chr1.3:61493681-61493700 None:intergenic 35.0%
!!! ACCTTTTGAAACCATGGTTT+TGG - chr1.3:61493690-61493709 None:intergenic 35.0%
!!! CCATTTTGGTTTTGAGAGTT+TGG + chr1.3:61494154-61494173 MS.gene20866:intron 35.0%
!!! GAATTTGATGTTTTTGGGGA+TGG + chr1.3:61494115-61494134 MS.gene20866:intron 35.0%
AAAGAGTGAATACAAGCCTG+GGG + chr1.3:61493327-61493346 MS.gene20866:CDS 40.0%
AAAGTTGCCGCTATAATGGT+TGG + chr1.3:61494575-61494594 MS.gene20866:CDS 40.0%
AAATGCTTCCCTACGAAGAT+TGG + chr1.3:61495515-61495534 MS.gene20866:CDS 40.0%
AACCTGTGTTGGAAACTTAC+AGG - chr1.3:61494966-61494985 None:intergenic 40.0%
ACTATAACAGGAAGTGGGAT+GGG + chr1.3:61493502-61493521 MS.gene20866:intron 40.0%
ACTTACTTGTCAATGGCTCA+TGG + chr1.3:61494729-61494748 MS.gene20866:CDS 40.0%
AGACTCACCAACCATTATAG+CGG - chr1.3:61494585-61494604 None:intergenic 40.0%
AGTCATAAACACACAGCGAA+AGG - chr1.3:61494824-61494843 None:intergenic 40.0%
ATCCTGACTGAAACAATCAC+TGG - chr1.3:61495096-61495115 None:intergenic 40.0%
ATCTTCATCAGGACCCAAAA+CGG + chr1.3:61493213-61493232 MS.gene20866:CDS 40.0%
ATGGAACCTCATGGAATAGT+GGG + chr1.3:61494785-61494804 MS.gene20866:CDS 40.0%
CAAAGAGTGAATACAAGCCT+GGG + chr1.3:61493326-61493345 MS.gene20866:CDS 40.0%
CTTACTTGTCAATGGCTCAT+GGG + chr1.3:61494730-61494749 MS.gene20866:CDS 40.0%
GAAGAATCACTAACCTGTGT+TGG - chr1.3:61494977-61494996 None:intergenic 40.0%
GACCGAGGGTAACAAAATTA+TGG + chr1.3:61495070-61495089 MS.gene20866:intron 40.0%
GACCTTCTTCAAGGATCATA+TGG + chr1.3:61495281-61495300 MS.gene20866:intron 40.0%
GCTAACCGTCTAATGATGAA+AGG + chr1.3:61493563-61493582 MS.gene20866:CDS 40.0%
GGTGTATGTGTATCCAAACA+GGG + chr1.3:61493977-61493996 MS.gene20866:intron 40.0%
TACCGTAGCTTCTATGGTAT+CGG - chr1.3:61493600-61493619 None:intergenic 40.0%
TACTATAACAGGAAGTGGGA+TGG + chr1.3:61493501-61493520 MS.gene20866:intron 40.0%
TAGATCAGGTATGTTTGGGT+TGG + chr1.3:61494179-61494198 MS.gene20866:intron 40.0%
TATGGGAGTTCCATTACTCA+TGG + chr1.3:61495299-61495318 MS.gene20866:CDS 40.0%
TCAAAGAGTGAATACAAGCC+TGG + chr1.3:61493325-61493344 MS.gene20866:CDS 40.0%
TCAATTAGTCCGTCATATCC+AGG - chr1.3:61493539-61493558 None:intergenic 40.0%
TCCCATATGATCCTTGAAGA+AGG - chr1.3:61495286-61495305 None:intergenic 40.0%
TCGAAGAAACCTGGATATGA+CGG + chr1.3:61493527-61493546 MS.gene20866:CDS 40.0%
TGTCGAAAGATGCAAGTATC+TGG + chr1.3:61494907-61494926 MS.gene20866:CDS 40.0%
! AAGGCGCTAAGTATTGTTGT+TGG + chr1.3:61493109-61493128 MS.gene20866:CDS 40.0%
! AAGTGCTAACAAACTTGCTC+TGG - chr1.3:61494463-61494482 None:intergenic 40.0%
! CAGAAGATGCAAACCGTTTT+GGG - chr1.3:61493229-61493248 None:intergenic 40.0%
! CTTTGCTGATTATAGCTGTC+AGG + chr1.3:61495329-61495348 MS.gene20866:CDS 40.0%
! GATATCTAGAGTTTGACCGA+GGG + chr1.3:61495056-61495075 MS.gene20866:intron 40.0%
! GGCCATAATTTTGTTACCCT+CGG - chr1.3:61495075-61495094 None:intergenic 40.0%
! GTCTACAGAATTGACTTTGC+AGG - chr1.3:61494758-61494777 None:intergenic 40.0%
! TTACGGTATGTCTGGAATTG+TGG - chr1.3:61494310-61494329 None:intergenic 40.0%
!! AATCTTCGTAGGGAAGCATT+TGG - chr1.3:61495516-61495535 None:intergenic 40.0%
!! TCACTAGCTTGTTACGTTCA+GGG - chr1.3:61494651-61494670 None:intergenic 40.0%
!!! TTGATGTTTTTGGGGATGGA+TGG + chr1.3:61494119-61494138 MS.gene20866:intron 40.0%
AACATTTGAGTCCGATCCCT+TGG + chr1.3:61495164-61495183 MS.gene20866:intron 45.0%
AAGTTGGGCTCCATGAGTAA+TGG - chr1.3:61495312-61495331 None:intergenic 45.0%
ACCTATCAGATGGAACCTCA+TGG + chr1.3:61494776-61494795 MS.gene20866:CDS 45.0%
AGGCAAAGTTGCCGCTATAA+TGG + chr1.3:61494571-61494590 MS.gene20866:CDS 45.0%
ATATCCCTTCCCATGAGAAC+TGG - chr1.3:61495041-61495060 None:intergenic 45.0%
ATGCTCATAGCTCCTATAGG+TGG + chr1.3:61494548-61494567 MS.gene20866:CDS 45.0%
CACCTGTAAGTTTCCAACAC+AGG + chr1.3:61494961-61494980 MS.gene20866:CDS 45.0%
CGAAAGATGCAAGTATCTGG+AGG + chr1.3:61494910-61494929 MS.gene20866:CDS 45.0%
CGGTGTATGTGTATCCAAAC+AGG + chr1.3:61493976-61493995 MS.gene20866:intron 45.0%
CTCCGATACCATAGAAGCTA+CGG + chr1.3:61493595-61493614 MS.gene20866:CDS 45.0%
GATGGAACCTCATGGAATAG+TGG + chr1.3:61494784-61494803 MS.gene20866:CDS 45.0%
TAGAGCTCCAAAAGGAATGG+AGG - chr1.3:61494524-61494543 None:intergenic 45.0%
TCCATGAGGTTCCATCTGAT+AGG - chr1.3:61494780-61494799 None:intergenic 45.0%
TCTGGAAGCCAATCTTCGTA+GGG - chr1.3:61495526-61495545 None:intergenic 45.0%
TGGAACCTCATGGAATAGTG+GGG + chr1.3:61494786-61494805 MS.gene20866:CDS 45.0%
TTTGGACATGCTTCCAAGCA+AGG - chr1.3:61495498-61495517 None:intergenic 45.0%
! GCAGAAGATGCAAACCGTTT+TGG - chr1.3:61493230-61493249 None:intergenic 45.0%
! GCGCTAAGTATTGTTGTTGG+CGG + chr1.3:61493112-61493131 MS.gene20866:CDS 45.0%
! GGATATCTAGAGTTTGACCG+AGG + chr1.3:61495055-61495074 MS.gene20866:intron 45.0%
! GGCAAAGATCTCCACCATTT+TGG + chr1.3:61494140-61494159 MS.gene20866:intron 45.0%
! GTTTCGCACCAAATTGGTTC+AGG + chr1.3:61493375-61493394 MS.gene20866:CDS 45.0%
! TTCTGGAAGCCAATCTTCGT+AGG - chr1.3:61495527-61495546 None:intergenic 45.0%
!! AGATTGGCTTCCAGAAACAC+AGG + chr1.3:61495531-61495550 MS.gene20866:CDS 45.0%
!! ATCAGGTATGTTTGGGTTGG+TGG + chr1.3:61494182-61494201 MS.gene20866:intron 45.0%
!! CACTAGCTTGTTACGTTCAG+GGG - chr1.3:61494650-61494669 None:intergenic 45.0%
!! CTCACTAGCTTGTTACGTTC+AGG - chr1.3:61494652-61494671 None:intergenic 45.0%
!! TCTCTTTCTAAGGCCCTGTT+TGG - chr1.3:61493993-61494012 None:intergenic 45.0%
CTCATAGCTCCTATAGGTGG+AGG + chr1.3:61494551-61494570 MS.gene20866:CDS 50.0%
CTGGAGGAAAGCAAGTGTGT+TGG + chr1.3:61494926-61494945 MS.gene20866:CDS 50.0%
CTTAACCCGCCAGTTCTCAT+GGG + chr1.3:61495029-61495048 MS.gene20866:intron 50.0%
GATCACCCCACTATTCCATG+AGG - chr1.3:61494794-61494813 None:intergenic 50.0%
GCAACTTTGCCTCCACCTAT+AGG - chr1.3:61494563-61494582 None:intergenic 50.0%
GGCCAGTGATTGTTTCAGTC+AGG + chr1.3:61495091-61495110 MS.gene20866:intron 50.0%
GTGTCATCTTCAGGAAGTGG+GGG - chr1.3:61495462-61495481 None:intergenic 50.0%
GTTAACTGGAAGGGGCTGTT+AGG - chr1.3:61493404-61493423 None:intergenic 50.0%
TCTTAACCCGCCAGTTCTCA+TGG + chr1.3:61495028-61495047 MS.gene20866:intron 50.0%
TGAAGATGACACCGTCCTGA+AGG + chr1.3:61495470-61495489 MS.gene20866:CDS 50.0%
! GGTGTCATCTTCAGGAAGTG+GGG - chr1.3:61495463-61495482 None:intergenic 50.0%
!! ACGGTGTCATCTTCAGGAAG+TGG - chr1.3:61495465-61495484 None:intergenic 50.0%
!! CGGTGTCATCTTCAGGAAGT+GGG - chr1.3:61495464-61495483 None:intergenic 50.0%
!! TTCAGGACGGTGTCATCTTC+AGG - chr1.3:61495471-61495490 None:intergenic 50.0%
CAAGCAAGGCTCCTTCAGGA+CGG - chr1.3:61495484-61495503 None:intergenic 55.0%
CTTCCAAGCAAGGCTCCTTC+AGG - chr1.3:61495488-61495507 None:intergenic 55.0%
GGATGGGACTCGAAGAAACC+TGG + chr1.3:61493518-61493537 MS.gene20866:CDS 55.0%
GGCAGTCACACCTGTGTTTC+TGG - chr1.3:61495544-61495563 None:intergenic 55.0%
TCCCTTCCCATGAGAACTGG+CGG - chr1.3:61495038-61495057 None:intergenic 55.0%
!! GGTTGGTGGCTAGAGTGGAA+TGG + chr1.3:61494196-61494215 MS.gene20866:intron 55.0%
!! GTTTGGGTTGGTGGCTAGAG+TGG + chr1.3:61494191-61494210 MS.gene20866:intron 55.0%
ACCCGCCAGTTCTCATGGGA+AGG + chr1.3:61495033-61495052 MS.gene20866:intron 60.0%
CCCGCCAGTTCTCATGGGAA+GGG + chr1.3:61495034-61495053 MS.gene20866:intron 60.0%
CCCTTCCCATGAGAACTGGC+GGG - chr1.3:61495037-61495056 None:intergenic 60.0%
CGTCCTGAAGGAGCCTTGCT+TGG + chr1.3:61495482-61495501 MS.gene20866:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 61493106 61495578 61493106 ID=MS.gene20866
chr1.3 mRNA 61493106 61495578 61493106 ID=MS.gene20866.t1;Parent=MS.gene20866
chr1.3 exon 61493106 61493234 61493106 ID=MS.gene20866.t1.exon1;Parent=MS.gene20866.t1
chr1.3 CDS 61493106 61493234 61493106 ID=cds.MS.gene20866.t1;Parent=MS.gene20866.t1
chr1.3 exon 61493307 61493396 61493307 ID=MS.gene20866.t1.exon2;Parent=MS.gene20866.t1
chr1.3 CDS 61493307 61493396 61493307 ID=cds.MS.gene20866.t1;Parent=MS.gene20866.t1
chr1.3 exon 61493512 61493616 61493512 ID=MS.gene20866.t1.exon3;Parent=MS.gene20866.t1
chr1.3 CDS 61493512 61493616 61493512 ID=cds.MS.gene20866.t1;Parent=MS.gene20866.t1
chr1.3 exon 61494497 61494596 61494497 ID=MS.gene20866.t1.exon4;Parent=MS.gene20866.t1
chr1.3 CDS 61494497 61494596 61494497 ID=cds.MS.gene20866.t1;Parent=MS.gene20866.t1
chr1.3 exon 61494716 61494807 61494716 ID=MS.gene20866.t1.exon5;Parent=MS.gene20866.t1
chr1.3 CDS 61494716 61494807 61494716 ID=cds.MS.gene20866.t1;Parent=MS.gene20866.t1
chr1.3 exon 61494902 61494982 61494902 ID=MS.gene20866.t1.exon6;Parent=MS.gene20866.t1
chr1.3 CDS 61494902 61494982 61494902 ID=cds.MS.gene20866.t1;Parent=MS.gene20866.t1
chr1.3 exon 61495282 61495350 61495282 ID=MS.gene20866.t1.exon7;Parent=MS.gene20866.t1
chr1.3 CDS 61495282 61495350 61495282 ID=cds.MS.gene20866.t1;Parent=MS.gene20866.t1
chr1.3 exon 61495441 61495578 61495441 ID=MS.gene20866.t1.exon8;Parent=MS.gene20866.t1
chr1.3 CDS 61495441 61495578 61495441 ID=cds.MS.gene20866.t1;Parent=MS.gene20866.t1
Gene Sequence

>MS.gene20866

ATGAAGGCGCTAAGTATTGTTGTTGGCGGTGTTCCAATTCCAACGCTTTGTTCTAATGGAATTCGTAAACGTCAGTTCTGCGTTTCAGCTTCTTCTTCTTCTTCTTCATCTTCATCAGGACCCAAAACGGTTTGCATCTTCTGCTATTGTTTTTCGTGTGCGATTATGAAATATTGTGTGTTTTGATTGAATTTGAATTAGGTGGGAGTTGCAGCAGCTTCAAAGAGTGAATACAAGCCTGGGGTTATTGATGATTTGTTCCTCAATTTGTTTCGCACCAAATTGGTTCAGGTAACCTAACAGCCCCTTCCAGTTAACTTATTTATAGCTTTTAGAAAGAAAGAAAAGAGGGATATATGAATATGATTAATGTGGTGGGTGGCTGAGTATGAAAATACTATAACAGGAAGTGGGATGGGACTCGAAGAAACCTGGATATGACGGACTAATTGAAGTTGCTAACCGTCTAATGATGAAAGGCACTACAAACTCCGATACCATAGAAGCTACGGTAATTTTCTCTTTCAGAATCTCGATAACTTGTAATAATAGTATTTCGCTTCAGAAGTGTTCCTTACAAACCAAAACCATGGTTTCAAAAGGTTTATATTCAACTGAGTTAATGCAATGCATGTTTGAATTGCATTATTTGAGCTTATAGAAAGACTTAAATTTTGTGTGACTGTTTAGGAGAAGTTATGAAGACAGATTATCAAACTGTTTATAAGGTGTTTTCAGCTTATTTTCATAAGTTCTCCAGATAGCTTATGAAAACAGCTTATATTTTATACGAAGACAATTTAATGTTATTTATCTTTTGCTATAGAAATAGCTTATGTACAAGCGCTTATCATAATAAGCACTTGTGAGCGGTGTATGTGTATCCAAACAGGGCCTTAGAAAGAGAAAGTAAAGCTTTTGGTTCAAGTTAATAAAAAAAAAAATCCTAAGATGATAAAAATGGAAACTTATTTTGTGTAGACTTTTATTTGAAAAACTGATGAGATAAGAATTTGATGTTTTTGGGGATGGATGGCAAAGATCTCCACCATTTTGGTTTTGAGAGTTTGGTATAGATCAGGTATGTTTGGGTTGGTGGCTAGAGTGGAATGGAATAAGCTAGTTATCTTTGCGAAAAAATGGACTTTACTTCATTCAATTCTATTCCGTTTTATTCCAATCCACTTCATTCAACTCTATACCACAATTCCAGACATACCGTAATACAATGTTACTTATTCTGGTCATACATGTATGTGTTTCAACTTTTCACATCACTGCAACATAAGTCATCACATTTGTGATATAGTAATTCACCTTATATGATTCTTCTAAACTTTGAATGGTCATTTGTCCAGAGCAAGTTTGTTAGCACTTATGTCTTGTTACAGGTACGAATTTTGAGGTCTTTGTTTCCTCCATTCCTTTTGGAGCTCTATAAAATGCTCATAGCTCCTATAGGTGGAGGCAAAGTTGCCGCTATAATGGTTGGTGAGTCTGATAATATTACATCTCATTTTACAATTCTTCAAGATGATGTTCCCCTGAACGTAACAAGCTAGTGAGAAACTTTTTTGAGATATCCTTAAACATTTATTTAAGTTTTGAAGCAAGGGTTACTGCACTTACTTGTCAATGGCTCATGGGACCCTGCAAAGTCAATTCTGTAGACCTATCAGATGGAACCTCATGGAATAGTGGGGTGATCACTTATACCTTTCGCTGTGTGTTTATGACTGAATAACAATATCATCTTGTATTATTGAAAGTGGTGTATGTACTATAAAATGTTGTAGGTGCATGTCGAAAGATGCAAGTATCTGGAGGAAAGCAAGTGTGTTGGTATCTGCATCAACACCTGTAAGTTTCCAACACAGGTTAGTGATTCTTCAAACTCTTATCATTTTCTCTTCATATCTGTGTCTTAACCCGCCAGTTCTCATGGGAAGGGATATCTAGAGTTTGACCGAGGGTAACAAAATTATGGCCAGTGATTGTTTCAGTCAGGATTTGAACTCGGATTCAACCAAACGATTTGTCTTTAACTGAAATGCATTAAACATTTGAGTCCGATCCCTTGGTTTTTTCATGTTAGTATAAGAGTTAAATATATTCTGCCAGCTTTGAAGTTGTTGCATTTTATGGATGGTTCGATCTGACTCTATTTTAAATTTAGACCTTCTTCAAGGATCATATGGGAGTTCCATTACTCATGGAGCCCAACTTTGCTGATTATAGCTGTCAGGTAATAAATATTACGTATTCTCTTATGGAGTTCAAATTTATATGATGAGGTCGCTAATGTCACTATTTTCTTGACCTTTTAAATTTGCAGTTCAAATTCGGAGTTCTTCCCCCACTTCCTGAAGATGACACCGTCCTGAAGGAGCCTTGCTTGGAAGCATGTCCAAATGCTTCCCTACGAAGATTGGCTTCCAGAAACACAGGTGTGACTGCCTGCCCAAAGACATGA

Protein sequence

>MS.gene20866.t1

MKALSIVVGGVPIPTLCSNGIRKRQFCVSASSSSSSSSSGPKTVGVAAASKSEYKPGVIDDLFLNLFRTKLVQEVGWDSKKPGYDGLIEVANRLMMKGTTNSDTIEATVRILRSLFPPFLLELYKMLIAPIGGGKVAAIMVARVTALTCQWLMGPCKVNSVDLSDGTSWNSGVHVERCKYLEESKCVGICINTCKFPTQTFFKDHMGVPLLMEPNFADYSCQFKFGVLPPLPEDDTVLKEPCLEACPNASLRRLASRNTGVTACPKT