Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24266.t1 | KEH40159.1 | 95 | 280 | 11 | 1 | 1 | 280 | 90 | 366 | 1.80E-144 | 521.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24266.t1 | Q8LEZ4 | 56.6 | 279 | 100 | 5 | 1 | 274 | 108 | 370 | 6.8e-76 | 285.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24266.t1 | A0A072VDQ7 | 95.0 | 280 | 11 | 1 | 1 | 280 | 90 | 366 | 1.3e-144 | 521.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene24266 | 0.841579 | 4.36E-58 | -1.69E-46 |
| MS.gene049159 | MS.gene24266 | 0.801915 | 7.19E-49 | -1.69E-46 |
| MS.gene049341 | MS.gene24266 | 0.810614 | 1.06E-50 | -1.69E-46 |
| MS.gene049382 | MS.gene24266 | 0.805382 | 1.37E-49 | -1.69E-46 |
| MS.gene049807 | MS.gene24266 | 0.832889 | 7.30E-56 | -1.69E-46 |
| MS.gene049821 | MS.gene24266 | 0.813512 | 2.47E-51 | -1.69E-46 |
| MS.gene049850 | MS.gene24266 | 0.805656 | 1.20E-49 | -1.69E-46 |
| MS.gene049887 | MS.gene24266 | 0.858586 | 7.44E-63 | -1.69E-46 |
| MS.gene050551 | MS.gene24266 | 0.822742 | 2.01E-53 | -1.69E-46 |
| MS.gene050689 | MS.gene24266 | 0.8513 | 9.71E-61 | -1.69E-46 |
| MS.gene050807 | MS.gene24266 | 0.848198 | 7.14E-60 | -1.69E-46 |
| MS.gene050808 | MS.gene24266 | 0.816905 | 4.35E-52 | -1.69E-46 |
| MS.gene050838 | MS.gene24266 | 0.859894 | 3.02E-63 | -1.69E-46 |
| MS.gene050901 | MS.gene24266 | 0.828595 | 8.24E-55 | -1.69E-46 |
| MS.gene051003 | MS.gene24266 | 0.805864 | 1.09E-49 | -1.69E-46 |
| MS.gene051102 | MS.gene24266 | 0.836618 | 8.42E-57 | -1.69E-46 |
| MS.gene051233 | MS.gene24266 | 0.805836 | 1.10E-49 | -1.69E-46 |
| MS.gene051234 | MS.gene24266 | 0.805128 | 1.55E-49 | -1.69E-46 |
| MS.gene051328 | MS.gene24266 | 0.827033 | 1.96E-54 | -1.69E-46 |
| MS.gene051343 | MS.gene24266 | 0.816902 | 4.35E-52 | -1.69E-46 |
| MS.gene051381 | MS.gene24266 | 0.813787 | 2.14E-51 | -1.69E-46 |
| MS.gene051577 | MS.gene24266 | 0.8015 | 8.75E-49 | -1.69E-46 |
| MS.gene05157 | MS.gene24266 | 0.822453 | 2.35E-53 | -1.69E-46 |
| MS.gene051700 | MS.gene24266 | 0.804376 | 2.23E-49 | -1.69E-46 |
| MS.gene051719 | MS.gene24266 | 0.812 | 5.28E-51 | -1.69E-46 |
| MS.gene051720 | MS.gene24266 | 0.81044 | 1.15E-50 | -1.69E-46 |
| MS.gene051744 | MS.gene24266 | 0.810623 | 1.05E-50 | -1.69E-46 |
| MS.gene052133 | MS.gene24266 | 0.847522 | 1.10E-59 | -1.69E-46 |
| MS.gene052242 | MS.gene24266 | -0.802336 | 5.89E-49 | -1.69E-46 |
| MS.gene052307 | MS.gene24266 | 0.822994 | 1.76E-53 | -1.69E-46 |
| MS.gene052335 | MS.gene24266 | 0.828993 | 6.60E-55 | -1.69E-46 |
| MS.gene052397 | MS.gene24266 | 0.849652 | 2.82E-60 | -1.69E-46 |
| MS.gene052516 | MS.gene24266 | 0.844153 | 9.02E-59 | -1.69E-46 |
| MS.gene052609 | MS.gene24266 | 0.841554 | 4.43E-58 | -1.69E-46 |
| MS.gene052665 | MS.gene24266 | 0.848521 | 5.81E-60 | -1.69E-46 |
| MS.gene052732 | MS.gene24266 | 0.819684 | 1.02E-52 | -1.69E-46 |
| MS.gene052858 | MS.gene24266 | 0.802988 | 4.32E-49 | -1.69E-46 |
| MS.gene052860 | MS.gene24266 | 0.812836 | 3.47E-51 | -1.69E-46 |
| MS.gene053058 | MS.gene24266 | 0.819757 | 9.82E-53 | -1.69E-46 |
| MS.gene053079 | MS.gene24266 | 0.824043 | 9.99E-54 | -1.69E-46 |
| MS.gene053122 | MS.gene24266 | 0.802809 | 4.70E-49 | -1.69E-46 |
| MS.gene053143 | MS.gene24266 | 0.825191 | 5.36E-54 | -1.69E-46 |
| MS.gene053144 | MS.gene24266 | 0.838738 | 2.41E-57 | -1.69E-46 |
| MS.gene053174 | MS.gene24266 | 0.806927 | 6.49E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene24266 | 0.826269 | 2.98E-54 | -1.69E-46 |
| MS.gene053563 | MS.gene24266 | 0.830221 | 3.32E-55 | -1.69E-46 |
| MS.gene053581 | MS.gene24266 | 0.837487 | 5.05E-57 | -1.69E-46 |
| MS.gene05364 | MS.gene24266 | 0.818085 | 2.36E-52 | -1.69E-46 |
| MS.gene054584 | MS.gene24266 | 0.834045 | 3.76E-56 | -1.69E-46 |
| MS.gene054824 | MS.gene24266 | 0.806084 | 9.77E-50 | -1.69E-46 |
| MS.gene055311 | MS.gene24266 | 0.818055 | 2.39E-52 | -1.69E-46 |
| MS.gene055313 | MS.gene24266 | 0.818701 | 1.71E-52 | -1.69E-46 |
| MS.gene055314 | MS.gene24266 | 0.800872 | 1.18E-48 | -1.69E-46 |
| MS.gene055424 | MS.gene24266 | 0.802126 | 6.51E-49 | -1.69E-46 |
| MS.gene055465 | MS.gene24266 | 0.832979 | 6.94E-56 | -1.69E-46 |
| MS.gene055466 | MS.gene24266 | 0.814642 | 1.39E-51 | -1.69E-46 |
| MS.gene055468 | MS.gene24266 | 0.82631 | 2.91E-54 | -1.69E-46 |
| MS.gene055469 | MS.gene24266 | 0.848292 | 6.73E-60 | -1.69E-46 |
| MS.gene055512 | MS.gene24266 | 0.826028 | 3.40E-54 | -1.69E-46 |
| MS.gene055513 | MS.gene24266 | 0.842566 | 2.39E-58 | -1.69E-46 |
| MS.gene055580 | MS.gene24266 | -0.833715 | 4.55E-56 | -1.69E-46 |
| MS.gene055891 | MS.gene24266 | 0.827579 | 1.45E-54 | -1.69E-46 |
| MS.gene056043 | MS.gene24266 | -0.835785 | 1.37E-56 | -1.69E-46 |
| MS.gene056181 | MS.gene24266 | 0.835427 | 1.69E-56 | -1.69E-46 |
| MS.gene056308 | MS.gene24266 | 0.838656 | 2.53E-57 | -1.69E-46 |
| MS.gene056507 | MS.gene24266 | 0.823376 | 1.43E-53 | -1.69E-46 |
| MS.gene056553 | MS.gene24266 | 0.802918 | 4.47E-49 | -1.69E-46 |
| MS.gene056760 | MS.gene24266 | 0.805959 | 1.04E-49 | -1.69E-46 |
| MS.gene057034 | MS.gene24266 | 0.812514 | 4.08E-51 | -1.69E-46 |
| MS.gene057444 | MS.gene24266 | 0.803558 | 3.29E-49 | -1.69E-46 |
| MS.gene057446 | MS.gene24266 | 0.843367 | 1.46E-58 | -1.69E-46 |
| MS.gene057705 | MS.gene24266 | 0.823359 | 1.45E-53 | -1.69E-46 |
| MS.gene05781 | MS.gene24266 | 0.812785 | 3.56E-51 | -1.69E-46 |
| MS.gene057869 | MS.gene24266 | 0.802056 | 6.72E-49 | -1.69E-46 |
| MS.gene057915 | MS.gene24266 | 0.818572 | 1.83E-52 | -1.69E-46 |
| MS.gene058010 | MS.gene24266 | 0.802304 | 5.98E-49 | -1.69E-46 |
| MS.gene058330 | MS.gene24266 | 0.812566 | 3.97E-51 | -1.69E-46 |
| MS.gene058638 | MS.gene24266 | 0.812043 | 5.17E-51 | -1.69E-46 |
| MS.gene058639 | MS.gene24266 | 0.818379 | 2.02E-52 | -1.69E-46 |
| MS.gene058852 | MS.gene24266 | 0.835335 | 1.78E-56 | -1.69E-46 |
| MS.gene058906 | MS.gene24266 | 0.804522 | 2.08E-49 | -1.69E-46 |
| MS.gene059171 | MS.gene24266 | 0.837528 | 4.93E-57 | -1.69E-46 |
| MS.gene059335 | MS.gene24266 | 0.806743 | 7.09E-50 | -1.69E-46 |
| MS.gene059725 | MS.gene24266 | 0.820361 | 7.14E-53 | -1.69E-46 |
| MS.gene05978 | MS.gene24266 | 0.8507 | 1.43E-60 | -1.69E-46 |
| MS.gene059937 | MS.gene24266 | 0.811998 | 5.29E-51 | -1.69E-46 |
| MS.gene059965 | MS.gene24266 | 0.818239 | 2.17E-52 | -1.69E-46 |
| MS.gene06001 | MS.gene24266 | 0.809801 | 1.58E-50 | -1.69E-46 |
| MS.gene060296 | MS.gene24266 | 0.806336 | 8.64E-50 | -1.69E-46 |
| MS.gene060429 | MS.gene24266 | 0.820114 | 8.14E-53 | -1.69E-46 |
| MS.gene060587 | MS.gene24266 | 0.828349 | 9.45E-55 | -1.69E-46 |
| MS.gene060637 | MS.gene24266 | 0.808732 | 2.68E-50 | -1.69E-46 |
| MS.gene061006 | MS.gene24266 | 0.863763 | 1.97E-64 | -1.69E-46 |
| MS.gene061100 | MS.gene24266 | 0.83115 | 1.97E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24266.t1 | MTR_1g022355 | 95.000 | 280 | 11 | 1 | 1 | 280 | 90 | 366 | 0.0 | 532 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24266.t1 | AT1G19520 | 56.631 | 279 | 100 | 5 | 1 | 274 | 108 | 370 | 5.32e-87 | 264 |
| MS.gene24266.t1 | AT1G19520 | 56.429 | 280 | 101 | 5 | 1 | 275 | 108 | 371 | 6.55e-84 | 266 |
Find 71 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATTAAGTTCAAGATTTA+TGG | 0.133676 | 1.1:-1929319 | MS.gene24266:CDS |
| TCAGCCACTTGTTCCCATTT+AGG | 0.207802 | 1.1:+1929280 | None:intergenic |
| TTGATCTATCGGATCCTAAA+TGG | 0.216797 | 1.1:-1929294 | MS.gene24266:CDS |
| ATGAGGCGGGAGAAGTTATT+TGG | 0.238365 | 1.1:-1929249 | MS.gene24266:CDS |
| TTAGAGAGCTTAGGTTTAAA+TGG | 0.238681 | 1.1:-1929525 | MS.gene24266:CDS |
| GGAGGTTAGTAATAAGGTTT+TGG | 0.281718 | 1.1:-1929659 | MS.gene24266:CDS |
| TGTTTGCATTTCCCGGTTAT+CGG | 0.314823 | 1.1:+1929211 | None:intergenic |
| GGTAACTTGTTTGCATTTCC+CGG | 0.333463 | 1.1:+1929204 | None:intergenic |
| GAATTATCCTTTATACTTCA+AGG | 0.334354 | 1.1:-1929053 | MS.gene24266:CDS |
| AAGGAGGCGAAGCCGATAAC+CGG | 0.340946 | 1.1:-1929223 | MS.gene24266:CDS |
| TGTGTGGGAGGTTAGTAATA+AGG | 0.359950 | 1.1:-1929665 | MS.gene24266:CDS |
| TAGAGCTTCTACAGCCTACT+AGG | 0.360591 | 1.1:-1929114 | MS.gene24266:CDS |
| TAAATGGGCACGTGAGAAAA+TGG | 0.380143 | 1.1:-1929509 | MS.gene24266:CDS |
| TGCATCTTCGCGATTTGATT+CGG | 0.380839 | 1.1:-1929716 | MS.gene24266:CDS |
| ATGGAAAAGGGTAGTGGTAG+TGG | 0.392895 | 1.1:-1929757 | MS.gene24266:CDS |
| ACAGTTACCTTGAAGTATAA+AGG | 0.399658 | 1.1:+1929046 | None:intergenic |
| TGTAGATTTGCTGGTGAAGT+TGG | 0.408581 | 1.1:-1929565 | MS.gene24266:CDS |
| GATGCTGGTGTTCGTGTTGA+TGG | 0.410669 | 1.1:-1929388 | MS.gene24266:CDS |
| AAATTAAGTTCAAGATTTAT+GGG | 0.422169 | 1.1:-1929318 | MS.gene24266:CDS |
| CGAGAAAATTCTGTCGTTGA+AGG | 0.433246 | 1.1:-1929182 | MS.gene24266:CDS |
| AAAGAGATGTGTAGATTTGC+TGG | 0.447104 | 1.1:-1929574 | MS.gene24266:CDS |
| GTTGACCCTGGTAGCTGAAT+GGG | 0.449689 | 1.1:-1929137 | MS.gene24266:CDS |
| ATGAGGATTTGGAGAAAATG+AGG | 0.450985 | 1.1:-1929471 | MS.gene24266:CDS |
| TAGAGAGCTTAGGTTTAAAT+GGG | 0.451572 | 1.1:-1929524 | MS.gene24266:CDS |
| TGATCTATCGGATCCTAAAT+GGG | 0.452985 | 1.1:-1929293 | MS.gene24266:CDS |
| GATTTATGGGCTTGATCTAT+CGG | 0.456068 | 1.1:-1929305 | MS.gene24266:CDS |
| TGGAAAAGGGTAGTGGTAGT+GGG | 0.463563 | 1.1:-1929756 | MS.gene24266:CDS |
| GTTGAGGAGAAGAAGGTTGT+TGG | 0.471339 | 1.1:-1929361 | MS.gene24266:CDS |
| TTGATCCAATCCACCCTAGT+AGG | 0.474961 | 1.1:+1929100 | None:intergenic |
| GCTCTACCCATTCAGCTACC+AGG | 0.475118 | 1.1:+1929131 | None:intergenic |
| TTGGTCTTCCTAAGAGGAAA+GGG | 0.483400 | 1.1:-1929342 | MS.gene24266:CDS |
| GCTGGTGAAGTTGGGATTCG+AGG | 0.483854 | 1.1:-1929556 | MS.gene24266:CDS |
| TGCTGCTTGTTATTGTTGAA+AGG | 0.487258 | 1.1:-1929792 | MS.gene24266:CDS |
| AGGAAGAAGGAGAAAATGAA+AGG | 0.488535 | 1.1:-1929619 | MS.gene24266:CDS |
| AACAAGCAGCATTGCATCTA+CGG | 0.491489 | 1.1:+1929804 | None:intergenic |
| ATTGGATCAATTTGCTTGAA+AGG | 0.495330 | 1.1:-1929087 | MS.gene24266:CDS |
| TACAGCCTACTAGGGTGGAT+TGG | 0.497105 | 1.1:-1929105 | MS.gene24266:CDS |
| GTTATCGGCTTCGCCTCCTT+CGG | 0.498408 | 1.1:+1929226 | None:intergenic |
| GTAGATTTGCTGGTGAAGTT+GGG | 0.499570 | 1.1:-1929564 | MS.gene24266:CDS |
| GCGATTTGCTTAGAGAGCTT+AGG | 0.500284 | 1.1:-1929534 | MS.gene24266:CDS |
| TGTTGACCCTGGTAGCTGAA+TGG | 0.506521 | 1.1:-1929138 | MS.gene24266:CDS |
| GCTGCTTGTTATTGTTGAAA+GGG | 0.513685 | 1.1:-1929791 | MS.gene24266:CDS |
| GGAAGAAGGAGAAAATGAAA+GGG | 0.516139 | 1.1:-1929618 | MS.gene24266:CDS |
| TATGAATAAAGAGAGGAAGA+AGG | 0.517752 | 1.1:-1929632 | MS.gene24266:CDS |
| GGAAAAGGGTAGTGGTAGTG+GGG | 0.518104 | 1.1:-1929755 | MS.gene24266:CDS |
| AGGTTGTTGGTCTTCCTAAG+AGG | 0.522381 | 1.1:-1929348 | MS.gene24266:CDS |
| GAAAAGGGTAGTGGTAGTGG+GGG | 0.524024 | 1.1:-1929754 | MS.gene24266:CDS |
| GAAAATGTCGTTGTTGATGC+TGG | 0.527609 | 1.1:-1929403 | MS.gene24266:CDS |
| TGGTAATGTTGAGGAGAAGA+AGG | 0.529708 | 1.1:-1929368 | MS.gene24266:CDS |
| TTAGAAATGGAAAAGGGTAG+TGG | 0.542276 | 1.1:-1929763 | MS.gene24266:CDS |
| AATTCTGTCGTTGAAGGAGA+AGG | 0.546483 | 1.1:-1929176 | MS.gene24266:CDS |
| GTTGGTCTTCCTAAGAGGAA+AGG | 0.559694 | 1.1:-1929343 | MS.gene24266:CDS |
| AGGAGGCGAAGCCGATAACC+GGG | 0.567405 | 1.1:-1929222 | MS.gene24266:CDS |
| AGAAGTTATTTGGCCGAAGG+AGG | 0.576981 | 1.1:-1929239 | MS.gene24266:CDS |
| GGCTGATAAGATTCATGAGG+CGG | 0.580784 | 1.1:-1929263 | MS.gene24266:CDS |
| GGGAGAAGTTATTTGGCCGA+AGG | 0.586632 | 1.1:-1929242 | MS.gene24266:CDS |
| GCTGATAAGATTCATGAGGC+GGG | 0.589093 | 1.1:-1929262 | MS.gene24266:CDS |
| TTTATGGAGGACTGTGTGGG+AGG | 0.601402 | 1.1:-1929677 | MS.gene24266:CDS |
| ATCTTCGCGATTTGATTCGG+TGG | 0.603612 | 1.1:-1929713 | MS.gene24266:CDS |
| AGGATTTATGGAGGACTGTG+TGG | 0.605077 | 1.1:-1929681 | MS.gene24266:CDS |
| CTGTCGTTGAAGGAGAAGGA+TGG | 0.608593 | 1.1:-1929172 | MS.gene24266:CDS |
| GGATCCTAAATGGGAACAAG+TGG | 0.618929 | 1.1:-1929284 | MS.gene24266:CDS |
| CTCTACCCATTCAGCTACCA+GGG | 0.620249 | 1.1:+1929132 | None:intergenic |
| GCTTCTACAGCCTACTAGGG+TGG | 0.622270 | 1.1:-1929110 | MS.gene24266:CDS |
| TCGTGTTGATGGTAATGTTG+AGG | 0.627189 | 1.1:-1929377 | MS.gene24266:CDS |
| AGAGCTTCTACAGCCTACTA+GGG | 0.634855 | 1.1:-1929113 | MS.gene24266:CDS |
| GGATTTATGGAGGACTGTGT+GGG | 0.636168 | 1.1:-1929680 | MS.gene24266:CDS |
| TGGTTGATATGAATAAAGAG+AGG | 0.637788 | 1.1:-1929639 | MS.gene24266:CDS |
| AGATGATAGTTTGTTGACCC+TGG | 0.658807 | 1.1:-1929149 | MS.gene24266:CDS |
| AGTGGCTGATAAGATTCATG+AGG | 0.693084 | 1.1:-1929266 | MS.gene24266:CDS |
| ATGGGCACGTGAGAAAATGG+AGG | 0.695770 | 1.1:-1929506 | MS.gene24266:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTAAGTTCAAGATTTA+TGG | - | chr1.1:1929561-1929580 | MS.gene24266:CDS | 15.0% |
| !! | AAATTAAGTTCAAGATTTAT+GGG | - | chr1.1:1929562-1929581 | MS.gene24266:CDS | 15.0% |
| ! | GAATTATCCTTTATACTTCA+AGG | - | chr1.1:1929827-1929846 | MS.gene24266:CDS | 25.0% |
| !!! | GTTGTTTTAGAAATGGAAAA+GGG | - | chr1.1:1929111-1929130 | MS.gene24266:CDS | 25.0% |
| ACAGTTACCTTGAAGTATAA+AGG | + | chr1.1:1929837-1929856 | None:intergenic | 30.0% | |
| TAGAGAGCTTAGGTTTAAAT+GGG | - | chr1.1:1929356-1929375 | MS.gene24266:CDS | 30.0% | |
| TATGAATAAAGAGAGGAAGA+AGG | - | chr1.1:1929248-1929267 | MS.gene24266:CDS | 30.0% | |
| TTAGAGAGCTTAGGTTTAAA+TGG | - | chr1.1:1929355-1929374 | MS.gene24266:CDS | 30.0% | |
| ! | ATCAACAACGACATTTTCTT+CGG | + | chr1.1:1929475-1929494 | None:intergenic | 30.0% |
| ! | ATTGGATCAATTTGCTTGAA+AGG | - | chr1.1:1929793-1929812 | MS.gene24266:CDS | 30.0% |
| ! | TACGGTACTTTTATCACATT+CGG | + | chr1.1:1929061-1929080 | None:intergenic | 30.0% |
| ! | TGGTTGATATGAATAAAGAG+AGG | - | chr1.1:1929241-1929260 | MS.gene24266:CDS | 30.0% |
| ! | TTAATTTTCCCTTTCCTCTT+AGG | + | chr1.1:1929549-1929568 | None:intergenic | 30.0% |
| !! | ACATGAGTTTTATGAGGATT+TGG | - | chr1.1:1929398-1929417 | MS.gene24266:CDS | 30.0% |
| !! | ATTTTAGTGAGGATTTATGG+AGG | - | chr1.1:1929190-1929209 | MS.gene24266:CDS | 30.0% |
| !! | TGGATTTTAGTGAGGATTTA+TGG | - | chr1.1:1929187-1929206 | MS.gene24266:CDS | 30.0% |
| !!! | GGTTGTTTTAGAAATGGAAA+AGG | - | chr1.1:1929110-1929129 | MS.gene24266:CDS | 30.0% |
| !!! | TGAAAGGGTTGTTTTAGAAA+TGG | - | chr1.1:1929104-1929123 | MS.gene24266:CDS | 30.0% |
| AAAGAGATGTGTAGATTTGC+TGG | - | chr1.1:1929306-1929325 | MS.gene24266:CDS | 35.0% | |
| AGGAAGAAGGAGAAAATGAA+AGG | - | chr1.1:1929261-1929280 | MS.gene24266:CDS | 35.0% | |
| ATGAGGATTTGGAGAAAATG+AGG | - | chr1.1:1929409-1929428 | MS.gene24266:CDS | 35.0% | |
| GATTTATGGGCTTGATCTAT+CGG | - | chr1.1:1929575-1929594 | MS.gene24266:CDS | 35.0% | |
| GGAAGAAGGAGAAAATGAAA+GGG | - | chr1.1:1929262-1929281 | MS.gene24266:CDS | 35.0% | |
| TGATCTATCGGATCCTAAAT+GGG | - | chr1.1:1929587-1929606 | MS.gene24266:CDS | 35.0% | |
| TTAGAAATGGAAAAGGGTAG+TGG | - | chr1.1:1929117-1929136 | MS.gene24266:CDS | 35.0% | |
| TTGATCTATCGGATCCTAAA+TGG | - | chr1.1:1929586-1929605 | MS.gene24266:CDS | 35.0% | |
| ! | ACGGTACTTTTATCACATTC+GGG | + | chr1.1:1929060-1929079 | None:intergenic | 35.0% |
| ! | CTTCAACGACAGAATTTTCT+CGG | + | chr1.1:1929700-1929719 | None:intergenic | 35.0% |
| ! | GGAGGTTAGTAATAAGGTTT+TGG | - | chr1.1:1929221-1929240 | MS.gene24266:CDS | 35.0% |
| !! | GCTGCTTGTTATTGTTGAAA+GGG | - | chr1.1:1929089-1929108 | MS.gene24266:CDS | 35.0% |
| !! | TGCTGCTTGTTATTGTTGAA+AGG | - | chr1.1:1929088-1929107 | MS.gene24266:CDS | 35.0% |
| AACAAGCAGCATTGCATCTA+CGG | + | chr1.1:1929079-1929098 | None:intergenic | 40.0% | |
| AATTCTGTCGTTGAAGGAGA+AGG | - | chr1.1:1929704-1929723 | MS.gene24266:CDS | 40.0% | |
| AGTGGCTGATAAGATTCATG+AGG | - | chr1.1:1929614-1929633 | MS.gene24266:CDS | 40.0% | |
| CGAGAAAATTCTGTCGTTGA+AGG | - | chr1.1:1929698-1929717 | MS.gene24266:CDS | 40.0% | |
| GAAAATGTCGTTGTTGATGC+TGG | - | chr1.1:1929477-1929496 | MS.gene24266:CDS | 40.0% | |
| TAAATGGGCACGTGAGAAAA+TGG | - | chr1.1:1929371-1929390 | MS.gene24266:CDS | 40.0% | |
| TGCATCTTCGCGATTTGATT+CGG | - | chr1.1:1929164-1929183 | MS.gene24266:CDS | 40.0% | |
| TGTGTGGGAGGTTAGTAATA+AGG | - | chr1.1:1929215-1929234 | MS.gene24266:CDS | 40.0% | |
| TGTTTGCATTTCCCGGTTAT+CGG | + | chr1.1:1929672-1929691 | None:intergenic | 40.0% | |
| ! | CGGTACTTTTATCACATTCG+GGG | + | chr1.1:1929059-1929078 | None:intergenic | 40.0% |
| ! | TGGTAATGTTGAGGAGAAGA+AGG | - | chr1.1:1929512-1929531 | MS.gene24266:CDS | 40.0% |
| ! | TTGGTCTTCCTAAGAGGAAA+GGG | - | chr1.1:1929538-1929557 | MS.gene24266:CDS | 40.0% |
| !! | AGATGATAGTTTGTTGACCC+TGG | - | chr1.1:1929731-1929750 | MS.gene24266:CDS | 40.0% |
| !! | GGAGGAACATGAGTTTTATG+AGG | - | chr1.1:1929392-1929411 | MS.gene24266:CDS | 40.0% |
| !! | GGTAACTTGTTTGCATTTCC+CGG | + | chr1.1:1929679-1929698 | None:intergenic | 40.0% |
| !! | GTAGATTTGCTGGTGAAGTT+GGG | - | chr1.1:1929316-1929335 | MS.gene24266:CDS | 40.0% |
| !! | TCGTGTTGATGGTAATGTTG+AGG | - | chr1.1:1929503-1929522 | MS.gene24266:CDS | 40.0% |
| !! | TGTAGATTTGCTGGTGAAGT+TGG | - | chr1.1:1929315-1929334 | MS.gene24266:CDS | 40.0% |
| !!! | TGATTCGGTGGATTTTAGTG+AGG | - | chr1.1:1929179-1929198 | MS.gene24266:CDS | 40.0% |
| AGAAGTTATTTGGCCGAAGG+AGG | - | chr1.1:1929641-1929660 | MS.gene24266:CDS | 45.0% | |
| AGAGCTTCTACAGCCTACTA+GGG | - | chr1.1:1929767-1929786 | MS.gene24266:CDS | 45.0% | |
| AGGATTTATGGAGGACTGTG+TGG | - | chr1.1:1929199-1929218 | MS.gene24266:CDS | 45.0% | |
| ATGAGGCGGGAGAAGTTATT+TGG | - | chr1.1:1929631-1929650 | MS.gene24266:CDS | 45.0% | |
| GCTGATAAGATTCATGAGGC+GGG | - | chr1.1:1929618-1929637 | MS.gene24266:CDS | 45.0% | |
| GGATCCTAAATGGGAACAAG+TGG | - | chr1.1:1929596-1929615 | MS.gene24266:CDS | 45.0% | |
| GGATTTATGGAGGACTGTGT+GGG | - | chr1.1:1929200-1929219 | MS.gene24266:CDS | 45.0% | |
| GGCTGATAAGATTCATGAGG+CGG | - | chr1.1:1929617-1929636 | MS.gene24266:CDS | 45.0% | |
| GTTGAGGAGAAGAAGGTTGT+TGG | - | chr1.1:1929519-1929538 | MS.gene24266:CDS | 45.0% | |
| TAGAGCTTCTACAGCCTACT+AGG | - | chr1.1:1929766-1929785 | MS.gene24266:CDS | 45.0% | |
| TCAGCCACTTGTTCCCATTT+AGG | + | chr1.1:1929603-1929622 | None:intergenic | 45.0% | |
| TTGATCCAATCCACCCTAGT+AGG | + | chr1.1:1929783-1929802 | None:intergenic | 45.0% | |
| ! | ATGGAAAAGGGTAGTGGTAG+TGG | - | chr1.1:1929123-1929142 | MS.gene24266:CDS | 45.0% |
| ! | GCGATTTGCTTAGAGAGCTT+AGG | - | chr1.1:1929346-1929365 | MS.gene24266:CDS | 45.0% |
| ! | TGGAAAAGGGTAGTGGTAGT+GGG | - | chr1.1:1929124-1929143 | MS.gene24266:CDS | 45.0% |
| !! | AGGTTGTTGGTCTTCCTAAG+AGG | - | chr1.1:1929532-1929551 | MS.gene24266:CDS | 45.0% |
| !! | ATCTTCGCGATTTGATTCGG+TGG | - | chr1.1:1929167-1929186 | MS.gene24266:CDS | 45.0% |
| !! | GTTGGTCTTCCTAAGAGGAA+AGG | - | chr1.1:1929537-1929556 | MS.gene24266:CDS | 45.0% |
| ATGGGCACGTGAGAAAATGG+AGG | - | chr1.1:1929374-1929393 | MS.gene24266:CDS | 50.0% | |
| CTCTACCCATTCAGCTACCA+GGG | + | chr1.1:1929751-1929770 | None:intergenic | 50.0% | |
| CTGTCGTTGAAGGAGAAGGA+TGG | - | chr1.1:1929708-1929727 | MS.gene24266:CDS | 50.0% | |
| GATGCTGGTGTTCGTGTTGA+TGG | - | chr1.1:1929492-1929511 | MS.gene24266:CDS | 50.0% | |
| GGGAGAAGTTATTTGGCCGA+AGG | - | chr1.1:1929638-1929657 | MS.gene24266:CDS | 50.0% | |
| GTTGACCCTGGTAGCTGAAT+GGG | - | chr1.1:1929743-1929762 | MS.gene24266:CDS | 50.0% | |
| TACAGCCTACTAGGGTGGAT+TGG | - | chr1.1:1929775-1929794 | MS.gene24266:CDS | 50.0% | |
| TGTTGACCCTGGTAGCTGAA+TGG | - | chr1.1:1929742-1929761 | MS.gene24266:CDS | 50.0% | |
| TTTATGGAGGACTGTGTGGG+AGG | - | chr1.1:1929203-1929222 | MS.gene24266:CDS | 50.0% | |
| ! | GGAAAAGGGTAGTGGTAGTG+GGG | - | chr1.1:1929125-1929144 | MS.gene24266:CDS | 50.0% |
| ! | TAGTGGGGGTGGTGATGAAA+AGG | - | chr1.1:1929140-1929159 | MS.gene24266:CDS | 50.0% |
| !! | GAAAAGGGTAGTGGTAGTGG+GGG | - | chr1.1:1929126-1929145 | MS.gene24266:CDS | 50.0% |
| AAGGAGGCGAAGCCGATAAC+CGG | - | chr1.1:1929657-1929676 | MS.gene24266:CDS | 55.0% | |
| GCTCTACCCATTCAGCTACC+AGG | + | chr1.1:1929752-1929771 | None:intergenic | 55.0% | |
| GCTGGTGAAGTTGGGATTCG+AGG | - | chr1.1:1929324-1929343 | MS.gene24266:CDS | 55.0% | |
| GCTTCTACAGCCTACTAGGG+TGG | - | chr1.1:1929770-1929789 | MS.gene24266:CDS | 55.0% | |
| !! | GTTATCGGCTTCGCCTCCTT+CGG | + | chr1.1:1929657-1929676 | None:intergenic | 55.0% |
| AGGAGGCGAAGCCGATAACC+GGG | - | chr1.1:1929658-1929677 | MS.gene24266:CDS | 60.0% | |
| !! | AAGGGTAGTGGTAGTGGGGG+TGG | - | chr1.1:1929129-1929148 | MS.gene24266:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 1929030 | 1929872 | 1929030 | ID=MS.gene24266 |
| chr1.1 | mRNA | 1929030 | 1929872 | 1929030 | ID=MS.gene24266.t1;Parent=MS.gene24266 |
| chr1.1 | exon | 1929030 | 1929872 | 1929030 | ID=MS.gene24266.t1.exon1;Parent=MS.gene24266.t1 |
| chr1.1 | CDS | 1929030 | 1929872 | 1929030 | ID=cds.MS.gene24266.t1;Parent=MS.gene24266.t1 |
| Gene Sequence |
| Protein sequence |
