Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33428.t1 | XP_013441900.1 | 98.4 | 191 | 3 | 0 | 1 | 191 | 1 | 191 | 2.60E-102 | 381.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33428.t1 | Q9C523 | 48.7 | 189 | 92 | 2 | 3 | 190 | 1 | 185 | 1.2e-47 | 191.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33428.t1 | G7JKK5 | 98.4 | 191 | 3 | 0 | 1 | 191 | 1 | 191 | 1.9e-102 | 381.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049232 | MS.gene33428 | -0.800087 | 1.70E-48 | -1.69E-46 |
MS.gene049611 | MS.gene33428 | 0.841414 | 4.82E-58 | -1.69E-46 |
MS.gene049634 | MS.gene33428 | 0.817977 | 2.49E-52 | -1.69E-46 |
MS.gene050216 | MS.gene33428 | -0.825758 | 3.94E-54 | -1.69E-46 |
MS.gene050380 | MS.gene33428 | 0.805979 | 1.03E-49 | -1.69E-46 |
MS.gene050381 | MS.gene33428 | 0.875603 | 2.71E-68 | -1.69E-46 |
MS.gene050868 | MS.gene33428 | -0.807269 | 5.49E-50 | -1.69E-46 |
MS.gene050871 | MS.gene33428 | -0.808631 | 2.82E-50 | -1.69E-46 |
MS.gene050883 | MS.gene33428 | 0.803185 | 3.93E-49 | -1.69E-46 |
MS.gene051044 | MS.gene33428 | 0.804735 | 1.87E-49 | -1.69E-46 |
MS.gene05104 | MS.gene33428 | 0.827003 | 1.99E-54 | -1.69E-46 |
MS.gene051127 | MS.gene33428 | 0.841195 | 5.51E-58 | -1.69E-46 |
MS.gene051138 | MS.gene33428 | 0.833298 | 5.78E-56 | -1.69E-46 |
MS.gene051632 | MS.gene33428 | 0.830294 | 3.18E-55 | -1.69E-46 |
MS.gene052805 | MS.gene33428 | 0.817263 | 3.61E-52 | -1.69E-46 |
MS.gene053420 | MS.gene33428 | 0.873494 | 1.41E-67 | -1.69E-46 |
MS.gene053488 | MS.gene33428 | 0.846126 | 2.64E-59 | -1.69E-46 |
MS.gene053561 | MS.gene33428 | 0.82669 | 2.36E-54 | -1.69E-46 |
MS.gene054054 | MS.gene33428 | 0.800807 | 1.21E-48 | -1.69E-46 |
MS.gene054708 | MS.gene33428 | 0.809837 | 1.55E-50 | -1.69E-46 |
MS.gene055124 | MS.gene33428 | 0.867119 | 1.73E-65 | -1.69E-46 |
MS.gene055154 | MS.gene33428 | 0.865746 | 4.72E-65 | -1.69E-46 |
MS.gene055202 | MS.gene33428 | 0.833593 | 4.88E-56 | -1.69E-46 |
MS.gene055959 | MS.gene33428 | 0.86908 | 4.05E-66 | -1.69E-46 |
MS.gene056224 | MS.gene33428 | 0.812947 | 3.28E-51 | -1.69E-46 |
MS.gene056310 | MS.gene33428 | 0.808902 | 2.47E-50 | -1.69E-46 |
MS.gene056311 | MS.gene33428 | 0.820939 | 5.26E-53 | -1.69E-46 |
MS.gene056313 | MS.gene33428 | 0.822406 | 2.41E-53 | -1.69E-46 |
MS.gene056856 | MS.gene33428 | 0.806933 | 6.47E-50 | -1.69E-46 |
MS.gene057014 | MS.gene33428 | 0.800952 | 1.13E-48 | -1.69E-46 |
MS.gene057549 | MS.gene33428 | 0.825806 | 3.83E-54 | -1.69E-46 |
MS.gene058068 | MS.gene33428 | 0.807885 | 4.06E-50 | -1.69E-46 |
MS.gene058093 | MS.gene33428 | 0.861217 | 1.20E-63 | -1.69E-46 |
MS.gene058099 | MS.gene33428 | 0.872096 | 4.13E-67 | -1.69E-46 |
MS.gene058108 | MS.gene33428 | 0.862781 | 3.97E-64 | -1.69E-46 |
MS.gene058109 | MS.gene33428 | 0.850552 | 1.58E-60 | -1.69E-46 |
MS.gene058111 | MS.gene33428 | 0.810143 | 1.33E-50 | -1.69E-46 |
MS.gene058171 | MS.gene33428 | 0.871166 | 8.40E-67 | -1.69E-46 |
MS.gene058173 | MS.gene33428 | 0.869112 | 3.95E-66 | -1.69E-46 |
MS.gene058175 | MS.gene33428 | 0.878343 | 3.03E-69 | -1.69E-46 |
MS.gene058179 | MS.gene33428 | 0.871521 | 6.42E-67 | -1.69E-46 |
MS.gene058180 | MS.gene33428 | 0.825146 | 5.50E-54 | -1.69E-46 |
MS.gene058269 | MS.gene33428 | 0.807897 | 4.04E-50 | -1.69E-46 |
MS.gene058493 | MS.gene33428 | 0.812761 | 3.60E-51 | -1.69E-46 |
MS.gene058494 | MS.gene33428 | 0.819643 | 1.04E-52 | -1.69E-46 |
MS.gene058840 | MS.gene33428 | 0.817198 | 3.74E-52 | -1.69E-46 |
MS.gene059037 | MS.gene33428 | 0.883936 | 2.94E-71 | -1.69E-46 |
MS.gene059038 | MS.gene33428 | 0.876514 | 1.31E-68 | -1.69E-46 |
MS.gene059044 | MS.gene33428 | 0.832504 | 9.10E-56 | -1.69E-46 |
MS.gene059045 | MS.gene33428 | 0.861981 | 7.00E-64 | -1.69E-46 |
MS.gene059223 | MS.gene33428 | 0.825076 | 5.71E-54 | -1.69E-46 |
MS.gene059690 | MS.gene33428 | 0.803611 | 3.21E-49 | -1.69E-46 |
MS.gene059694 | MS.gene33428 | 0.801077 | 1.07E-48 | -1.69E-46 |
MS.gene059865 | MS.gene33428 | -0.801122 | 1.05E-48 | -1.69E-46 |
MS.gene059916 | MS.gene33428 | 0.800077 | 1.71E-48 | -1.69E-46 |
MS.gene060205 | MS.gene33428 | 0.813342 | 2.69E-51 | -1.69E-46 |
MS.gene060578 | MS.gene33428 | 0.807367 | 5.23E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33428.t1 | MTR_4g013385 | 98.429 | 191 | 3 | 0 | 1 | 191 | 1 | 191 | 1.78e-140 | 389 |
MS.gene33428.t1 | MTR_0433s0040 | 98.429 | 191 | 3 | 0 | 1 | 191 | 1 | 191 | 1.78e-140 | 389 |
MS.gene33428.t1 | MTR_4g013355 | 69.474 | 190 | 47 | 2 | 3 | 191 | 1 | 180 | 1.61e-92 | 268 |
MS.gene33428.t1 | MTR_4g013770 | 67.045 | 176 | 56 | 1 | 17 | 190 | 16 | 191 | 7.40e-83 | 244 |
MS.gene33428.t1 | MTR_4g013345 | 60.440 | 182 | 67 | 3 | 14 | 190 | 15 | 196 | 2.02e-75 | 225 |
MS.gene33428.t1 | MTR_4g013350 | 61.202 | 183 | 65 | 3 | 14 | 190 | 15 | 197 | 1.28e-74 | 223 |
MS.gene33428.t1 | MTR_4g013320 | 60.326 | 184 | 65 | 4 | 15 | 190 | 16 | 199 | 1.92e-72 | 218 |
MS.gene33428.t1 | MTR_7g070390 | 58.511 | 188 | 75 | 1 | 6 | 190 | 5 | 192 | 5.91e-72 | 216 |
MS.gene33428.t1 | MTR_4g013330 | 58.696 | 184 | 68 | 4 | 15 | 190 | 16 | 199 | 4.22e-71 | 214 |
MS.gene33428.t1 | MTR_4g013335 | 56.354 | 181 | 73 | 3 | 15 | 190 | 17 | 196 | 2.66e-69 | 209 |
MS.gene33428.t1 | MTR_4g013325 | 62.759 | 145 | 53 | 1 | 47 | 190 | 55 | 199 | 8.13e-66 | 201 |
MS.gene33428.t1 | MTR_4g013310 | 54.891 | 184 | 73 | 5 | 15 | 190 | 16 | 197 | 4.28e-65 | 199 |
MS.gene33428.t1 | MTR_1g054525 | 46.486 | 185 | 94 | 3 | 9 | 190 | 10 | 192 | 1.20e-56 | 177 |
MS.gene33428.t1 | MTR_7g093850 | 42.021 | 188 | 106 | 3 | 6 | 190 | 7 | 194 | 1.97e-47 | 154 |
MS.gene33428.t1 | MTR_7g093790 | 41.989 | 181 | 99 | 4 | 13 | 190 | 14 | 191 | 1.64e-46 | 151 |
MS.gene33428.t1 | MTR_7g093820 | 40.426 | 188 | 109 | 3 | 6 | 190 | 7 | 194 | 1.89e-46 | 151 |
MS.gene33428.t1 | MTR_4g073950 | 44.444 | 153 | 83 | 1 | 40 | 190 | 40 | 192 | 1.20e-45 | 149 |
MS.gene33428.t1 | MTR_7g093830 | 41.143 | 175 | 100 | 3 | 19 | 190 | 19 | 193 | 9.05e-45 | 147 |
MS.gene33428.t1 | MTR_1g056370 | 45.695 | 151 | 81 | 1 | 40 | 189 | 35 | 185 | 2.54e-43 | 143 |
MS.gene33428.t1 | MTR_7g093870 | 41.975 | 162 | 76 | 3 | 41 | 190 | 38 | 193 | 1.12e-39 | 135 |
MS.gene33428.t1 | MTR_4g078885 | 36.872 | 179 | 111 | 2 | 14 | 191 | 9 | 186 | 1.74e-38 | 130 |
MS.gene33428.t1 | MTR_3g034030 | 37.222 | 180 | 111 | 2 | 13 | 191 | 8 | 186 | 1.76e-38 | 130 |
MS.gene33428.t1 | MTR_5g096120 | 37.234 | 188 | 107 | 5 | 9 | 190 | 7 | 189 | 1.63e-37 | 128 |
MS.gene33428.t1 | MTR_3g105640 | 41.558 | 154 | 83 | 3 | 42 | 190 | 37 | 188 | 3.38e-37 | 127 |
MS.gene33428.t1 | MTR_3g105630 | 37.634 | 186 | 107 | 5 | 11 | 190 | 7 | 189 | 1.53e-36 | 125 |
MS.gene33428.t1 | MTR_4g122130 | 34.211 | 152 | 99 | 1 | 40 | 190 | 29 | 180 | 8.15e-25 | 95.5 |
MS.gene33428.t1 | MTR_4g122110 | 33.974 | 156 | 99 | 2 | 36 | 190 | 28 | 180 | 1.08e-23 | 92.8 |
MS.gene33428.t1 | MTR_4g049550 | 33.088 | 136 | 90 | 1 | 42 | 176 | 29 | 164 | 8.25e-17 | 74.7 |
MS.gene33428.t1 | MTR_4g049570 | 31.915 | 141 | 90 | 2 | 46 | 185 | 33 | 168 | 5.27e-16 | 72.4 |
MS.gene33428.t1 | MTR_1g046490 | 39.560 | 91 | 54 | 1 | 77 | 167 | 121 | 210 | 4.80e-14 | 68.6 |
MS.gene33428.t1 | MTR_1g046500 | 40.659 | 91 | 53 | 1 | 77 | 167 | 135 | 224 | 1.78e-13 | 67.0 |
MS.gene33428.t1 | MTR_1g046800 | 41.111 | 90 | 52 | 1 | 78 | 167 | 136 | 224 | 2.08e-13 | 67.0 |
MS.gene33428.t1 | MTR_1g115510 | 37.815 | 119 | 67 | 4 | 78 | 189 | 235 | 353 | 1.69e-12 | 65.1 |
MS.gene33428.t1 | MTR_8g099135 | 31.618 | 136 | 69 | 5 | 50 | 169 | 37 | 164 | 3.73e-11 | 59.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33428.t1 | AT1G58170 | 48.421 | 190 | 91 | 3 | 3 | 190 | 1 | 185 | 1.28e-63 | 194 |
MS.gene33428.t1 | AT1G55210 | 50.802 | 187 | 87 | 3 | 7 | 190 | 3 | 187 | 5.00e-63 | 193 |
MS.gene33428.t1 | AT1G55210 | 50.802 | 187 | 87 | 3 | 7 | 190 | 3 | 187 | 5.00e-63 | 193 |
MS.gene33428.t1 | AT3G13650 | 53.216 | 171 | 77 | 2 | 21 | 190 | 18 | 186 | 8.19e-61 | 187 |
MS.gene33428.t1 | AT5G49040 | 46.995 | 183 | 91 | 3 | 11 | 190 | 12 | 191 | 1.67e-54 | 172 |
MS.gene33428.t1 | AT1G65870 | 45.033 | 151 | 82 | 1 | 40 | 189 | 39 | 189 | 5.89e-46 | 150 |
MS.gene33428.t1 | AT3G13660 | 58.120 | 117 | 49 | 0 | 74 | 190 | 9 | 125 | 1.31e-43 | 142 |
MS.gene33428.t1 | AT5G42500 | 46.575 | 146 | 73 | 3 | 46 | 189 | 43 | 185 | 1.45e-43 | 144 |
MS.gene33428.t1 | AT5G42510 | 44.667 | 150 | 80 | 2 | 41 | 189 | 35 | 182 | 3.00e-43 | 143 |
MS.gene33428.t1 | AT5G49030 | 45.029 | 171 | 89 | 3 | 18 | 185 | 16 | 184 | 6.67e-42 | 150 |
MS.gene33428.t1 | AT3G13662 | 46.715 | 137 | 71 | 1 | 41 | 177 | 38 | 172 | 7.93e-41 | 136 |
MS.gene33428.t1 | AT1G22900 | 44.000 | 150 | 81 | 2 | 41 | 189 | 46 | 193 | 9.82e-40 | 134 |
MS.gene33428.t1 | AT2G21100 | 40.940 | 149 | 87 | 1 | 42 | 189 | 39 | 187 | 9.89e-39 | 131 |
MS.gene33428.t1 | AT2G21100 | 40.940 | 149 | 87 | 1 | 42 | 189 | 39 | 187 | 9.89e-39 | 131 |
MS.gene33428.t1 | AT3G58090 | 46.789 | 109 | 58 | 0 | 81 | 189 | 163 | 271 | 5.98e-34 | 121 |
MS.gene33428.t1 | AT2G21110 | 38.411 | 151 | 88 | 1 | 45 | 190 | 36 | 186 | 3.07e-32 | 115 |
MS.gene33428.t1 | AT4G38700 | 36.842 | 190 | 107 | 6 | 8 | 190 | 7 | 190 | 9.80e-31 | 111 |
MS.gene33428.t1 | AT4G23690 | 32.117 | 137 | 87 | 4 | 37 | 169 | 32 | 166 | 2.58e-15 | 70.9 |
MS.gene33428.t1 | AT4G11210 | 27.746 | 173 | 113 | 6 | 5 | 173 | 2 | 166 | 1.12e-13 | 66.6 |
MS.gene33428.t1 | AT4G11190 | 29.630 | 135 | 89 | 3 | 39 | 169 | 30 | 162 | 3.26e-13 | 65.5 |
MS.gene33428.t1 | AT4G11180 | 32.374 | 139 | 87 | 5 | 36 | 169 | 28 | 164 | 1.15e-11 | 61.2 |
Find 40 sgRNAs with CRISPR-Local
Find 45 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTCTTCTTCTGAACAATTT+AGG | 0.169887 | 4.2:-87024301 | None:intergenic |
ACCTCAATTGAGCTCAAAAT+TGG | 0.270077 | 4.2:+87024468 | MS.gene33428:CDS |
TGGAAGCACAATTACTATCT+TGG | 0.342636 | 4.2:+87024585 | MS.gene33428:CDS |
TTATTTGAAGGGAAATATAA+TGG | 0.360119 | 4.2:+87024565 | MS.gene33428:CDS |
TTAGCCACTTTAGATTCTAT+TGG | 0.363260 | 4.2:+87024329 | MS.gene33428:CDS |
AAGCTCAGTTTGTGAGGTAT+AGG | 0.375610 | 4.2:-87024515 | None:intergenic |
GGAAGCACAATTACTATCTT+GGG | 0.437728 | 4.2:+87024586 | MS.gene33428:CDS |
ATCTATTGATCCCACGAAAC+CGG | 0.454018 | 4.2:-87024278 | None:intergenic |
AAGAAATGATGCTTATGAAA+AGG | 0.476165 | 4.2:+87024609 | MS.gene33428:CDS |
AAATTGGTTGGAAGGGCTCA+AGG | 0.505137 | 4.2:+87024484 | MS.gene33428:CDS |
ATGCCTGTGATTGGTGGAAG+TGG | 0.512180 | 4.2:+87024640 | MS.gene33428:CDS |
CATAGACAACGCTTTAACCT+CGG | 0.517171 | 4.2:+87024444 | MS.gene33428:CDS |
TGAGCTCAAAATTGGTTGGA+AGG | 0.519356 | 4.2:+87024476 | MS.gene33428:CDS |
TACTATTTGAATACCACTAC+AGG | 0.522854 | 4.2:+87024703 | MS.gene33428:CDS |
CAATTGAGCTCAAAATTGGT+TGG | 0.529085 | 4.2:+87024472 | MS.gene33428:CDS |
CATGCCAATAGAATCTAAAG+TGG | 0.545838 | 4.2:-87024333 | None:intergenic |
GTTAGAGAAATGCCTGTGAT+TGG | 0.553503 | 4.2:+87024631 | MS.gene33428:CDS |
ACAAGATGAGACCGGTTTCG+TGG | 0.556174 | 4.2:+87024267 | MS.gene33428:CDS |
AAGTTTAACACAACAAACTT+CGG | 0.557297 | 4.2:+87024409 | MS.gene33428:CDS |
ATAGACAACGCTTTAACCTC+GGG | 0.557789 | 4.2:+87024445 | MS.gene33428:CDS |
GTTGTGTTAAACTTCGGAAG+AGG | 0.562627 | 4.2:-87024400 | None:intergenic |
GTGTTAAACTTCGGAAGAGG+TGG | 0.563949 | 4.2:-87024397 | None:intergenic |
AAAATTAAGCTCAGTTTGTG+AGG | 0.564947 | 4.2:-87024521 | None:intergenic |
GGGTGTAACAAGAAAGGAGA+AGG | 0.565271 | 4.2:-87024228 | None:intergenic |
TTGTGAGGGTGTAACAAGAA+AGG | 0.567784 | 4.2:-87024234 | None:intergenic |
AAGTTTGTTGTGTTAAACTT+CGG | 0.573223 | 4.2:-87024406 | None:intergenic |
CAAGATGAGACCGGTTTCGT+GGG | 0.576259 | 4.2:+87024268 | MS.gene33428:CDS |
GAGCTCAAAATTGGTTGGAA+GGG | 0.580534 | 4.2:+87024477 | MS.gene33428:CDS |
AGTCCACTTCCACCAATCAC+AGG | 0.592137 | 4.2:-87024643 | None:intergenic |
AGAGAAATGCCTGTGATTGG+TGG | 0.594056 | 4.2:+87024634 | MS.gene33428:CDS |
AATTGGTTGGAAGGGCTCAA+GGG | 0.595873 | 4.2:+87024485 | MS.gene33428:CDS |
CTTGTGCAGTGACGATTGTG+AGG | 0.610302 | 4.2:-87024249 | None:intergenic |
AGTTGTAGCATCTCCTGTAG+TGG | 0.622414 | 4.2:-87024716 | None:intergenic |
GTCACTGCACAAGATGAGAC+CGG | 0.630861 | 4.2:+87024259 | MS.gene33428:CDS |
TGAGCTCAATTGAGGTCCCG+AGG | 0.649605 | 4.2:-87024461 | None:intergenic |
TGGAATAATTTCGATCGCGG+TGG | 0.668764 | 4.2:-87024377 | None:intergenic |
TATTGGCATGACGTAGTCAG+CGG | 0.668999 | 4.2:+87024346 | MS.gene33428:CDS |
AGGTGGAATAATTTCGATCG+CGG | 0.693640 | 4.2:-87024380 | None:intergenic |
TTGTGCAGTGACGATTGTGA+GGG | 0.713813 | 4.2:-87024248 | None:intergenic |
TAACACAACAAACTTCGGTG+AGG | 0.721589 | 4.2:+87024414 | MS.gene33428:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTATTTGAAGGGAAATATAA+TGG | + | chr4.2:87024565-87024584 | MS.gene33428:CDS | 20.0% |
!!! | ATGAATTTTGCATTATTTGA+AGG | + | chr4.2:87024553-87024572 | MS.gene33428:CDS | 20.0% |
!!! | TGAATTTTGCATTATTTGAA+GGG | + | chr4.2:87024554-87024573 | MS.gene33428:CDS | 20.0% |
! | AAGAAATGATGCTTATGAAA+AGG | + | chr4.2:87024609-87024628 | MS.gene33428:CDS | 25.0% |
! | AAGTTTAACACAACAAACTT+CGG | + | chr4.2:87024409-87024428 | MS.gene33428:CDS | 25.0% |
!!! | AAGTTTGTTGTGTTAAACTT+CGG | - | chr4.2:87024409-87024428 | None:intergenic | 25.0% |
AAAATTAAGCTCAGTTTGTG+AGG | - | chr4.2:87024524-87024543 | None:intergenic | 30.0% | |
TACTATTTGAATACCACTAC+AGG | + | chr4.2:87024703-87024722 | MS.gene33428:CDS | 30.0% | |
TGTCTTCTTCTGAACAATTT+AGG | - | chr4.2:87024304-87024323 | None:intergenic | 30.0% | |
! | TTAGCCACTTTAGATTCTAT+TGG | + | chr4.2:87024329-87024348 | MS.gene33428:CDS | 30.0% |
!!! | GGACTTTTTAGATTTGCTAA+GGG | + | chr4.2:87024661-87024680 | MS.gene33428:CDS | 30.0% |
!!! | TGGACTTTTTAGATTTGCTA+AGG | + | chr4.2:87024660-87024679 | MS.gene33428:CDS | 30.0% |
ACCTCAATTGAGCTCAAAAT+TGG | + | chr4.2:87024468-87024487 | MS.gene33428:CDS | 35.0% | |
CAATTGAGCTCAAAATTGGT+TGG | + | chr4.2:87024472-87024491 | MS.gene33428:CDS | 35.0% | |
CATGCCAATAGAATCTAAAG+TGG | - | chr4.2:87024336-87024355 | None:intergenic | 35.0% | |
! | ACCAATTTTGAGCTCAATTG+AGG | - | chr4.2:87024472-87024491 | None:intergenic | 35.0% |
! | GGAAGCACAATTACTATCTT+GGG | + | chr4.2:87024586-87024605 | MS.gene33428:CDS | 35.0% |
! | TGGAAGCACAATTACTATCT+TGG | + | chr4.2:87024585-87024604 | MS.gene33428:CDS | 35.0% |
AAGCTCAGTTTGTGAGGTAT+AGG | - | chr4.2:87024518-87024537 | None:intergenic | 40.0% | |
AGGTGGAATAATTTCGATCG+CGG | - | chr4.2:87024383-87024402 | None:intergenic | 40.0% | |
ATAGACAACGCTTTAACCTC+GGG | + | chr4.2:87024445-87024464 | MS.gene33428:CDS | 40.0% | |
ATCTATTGATCCCACGAAAC+CGG | - | chr4.2:87024281-87024300 | None:intergenic | 40.0% | |
CATAGACAACGCTTTAACCT+CGG | + | chr4.2:87024444-87024463 | MS.gene33428:CDS | 40.0% | |
GAGCTCAAAATTGGTTGGAA+GGG | + | chr4.2:87024477-87024496 | MS.gene33428:CDS | 40.0% | |
GTTAGAGAAATGCCTGTGAT+TGG | + | chr4.2:87024631-87024650 | MS.gene33428:CDS | 40.0% | |
GTTGTGTTAAACTTCGGAAG+AGG | - | chr4.2:87024403-87024422 | None:intergenic | 40.0% | |
TAACACAACAAACTTCGGTG+AGG | + | chr4.2:87024414-87024433 | MS.gene33428:CDS | 40.0% | |
TGAGCTCAAAATTGGTTGGA+AGG | + | chr4.2:87024476-87024495 | MS.gene33428:CDS | 40.0% | |
! | TTGTGAGGGTGTAACAAGAA+AGG | - | chr4.2:87024237-87024256 | None:intergenic | 40.0% |
AAATTGGTTGGAAGGGCTCA+AGG | + | chr4.2:87024484-87024503 | MS.gene33428:CDS | 45.0% | |
AATTGGTTGGAAGGGCTCAA+GGG | + | chr4.2:87024485-87024504 | MS.gene33428:CDS | 45.0% | |
AGAGAAATGCCTGTGATTGG+TGG | + | chr4.2:87024634-87024653 | MS.gene33428:CDS | 45.0% | |
AGTTGTAGCATCTCCTGTAG+TGG | - | chr4.2:87024719-87024738 | None:intergenic | 45.0% | |
GGGTGTAACAAGAAAGGAGA+AGG | - | chr4.2:87024231-87024250 | None:intergenic | 45.0% | |
GTGTTAAACTTCGGAAGAGG+TGG | - | chr4.2:87024400-87024419 | None:intergenic | 45.0% | |
TATTGGCATGACGTAGTCAG+CGG | + | chr4.2:87024346-87024365 | MS.gene33428:CDS | 45.0% | |
TGGAATAATTTCGATCGCGG+TGG | - | chr4.2:87024380-87024399 | None:intergenic | 45.0% | |
TTGTGCAGTGACGATTGTGA+GGG | - | chr4.2:87024251-87024270 | None:intergenic | 45.0% | |
AGTCCACTTCCACCAATCAC+AGG | - | chr4.2:87024646-87024665 | None:intergenic | 50.0% | |
ATGCCTGTGATTGGTGGAAG+TGG | + | chr4.2:87024640-87024659 | MS.gene33428:CDS | 50.0% | |
CTTGTGCAGTGACGATTGTG+AGG | - | chr4.2:87024252-87024271 | None:intergenic | 50.0% | |
GTCACTGCACAAGATGAGAC+CGG | + | chr4.2:87024259-87024278 | MS.gene33428:CDS | 50.0% | |
! | ACAAGATGAGACCGGTTTCG+TGG | + | chr4.2:87024267-87024286 | MS.gene33428:CDS | 50.0% |
! | CAAGATGAGACCGGTTTCGT+GGG | + | chr4.2:87024268-87024287 | MS.gene33428:CDS | 50.0% |
TGAGCTCAATTGAGGTCCCG+AGG | - | chr4.2:87024464-87024483 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 87024196 | 87024771 | 87024196 | ID=MS.gene33428 |
chr4.2 | mRNA | 87024196 | 87024771 | 87024196 | ID=MS.gene33428.t1;Parent=MS.gene33428 |
chr4.2 | exon | 87024196 | 87024771 | 87024196 | ID=MS.gene33428.t1.exon1;Parent=MS.gene33428.t1 |
chr4.2 | CDS | 87024196 | 87024771 | 87024196 | ID=cds.MS.gene33428.t1;Parent=MS.gene33428.t1 |
Gene Sequence |
Protein sequence |