Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36467.t1 | RHN62852.1 | 94.5 | 991 | 36 | 3 | 1 | 985 | 1 | 978 | 0.00E+00 | 1439.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36467.t1 | Q0WVX5 | 74.2 | 880 | 215 | 3 | 104 | 983 | 169 | 1036 | 5.3e-301 | 1035.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36467.t1 | A0A396IB54 | 94.5 | 991 | 36 | 3 | 1 | 985 | 1 | 978 | 0.0e+00 | 1439.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049137 | MS.gene36467 | 0.829829 | 4.14E-55 | -1.69E-46 |
MS.gene049171 | MS.gene36467 | 0.817498 | 3.20E-52 | -1.69E-46 |
MS.gene049222 | MS.gene36467 | 0.809482 | 1.85E-50 | -1.69E-46 |
MS.gene049257 | MS.gene36467 | 0.825529 | 4.46E-54 | -1.69E-46 |
MS.gene049609 | MS.gene36467 | 0.830782 | 2.42E-55 | -1.69E-46 |
MS.gene050538 | MS.gene36467 | 0.805464 | 1.32E-49 | -1.69E-46 |
MS.gene050577 | MS.gene36467 | 0.808746 | 2.66E-50 | -1.69E-46 |
MS.gene050747 | MS.gene36467 | 0.858838 | 6.26E-63 | -1.69E-46 |
MS.gene050772 | MS.gene36467 | 0.801353 | 9.37E-49 | -1.69E-46 |
MS.gene05080 | MS.gene36467 | 0.811137 | 8.14E-51 | -1.69E-46 |
MS.gene05081 | MS.gene36467 | 0.840256 | 9.70E-58 | -1.69E-46 |
MS.gene050950 | MS.gene36467 | 0.844713 | 6.38E-59 | -1.69E-46 |
MS.gene05105 | MS.gene36467 | 0.801693 | 7.98E-49 | -1.69E-46 |
MS.gene051525 | MS.gene36467 | 0.816417 | 5.59E-52 | -1.69E-46 |
MS.gene051666 | MS.gene36467 | 0.805578 | 1.25E-49 | -1.69E-46 |
MS.gene051838 | MS.gene36467 | 0.876567 | 1.26E-68 | -1.69E-46 |
MS.gene052134 | MS.gene36467 | 0.800967 | 1.12E-48 | -1.69E-46 |
MS.gene052164 | MS.gene36467 | 0.811083 | 8.36E-51 | -1.69E-46 |
MS.gene052346 | MS.gene36467 | 0.842364 | 2.71E-58 | -1.69E-46 |
MS.gene052414 | MS.gene36467 | 0.831802 | 1.36E-55 | -1.69E-46 |
MS.gene052481 | MS.gene36467 | 0.82888 | 7.03E-55 | -1.69E-46 |
MS.gene052501 | MS.gene36467 | 0.866847 | 2.11E-65 | -1.69E-46 |
MS.gene052503 | MS.gene36467 | 0.851162 | 1.06E-60 | -1.69E-46 |
MS.gene052505 | MS.gene36467 | 0.844801 | 6.04E-59 | -1.69E-46 |
MS.gene052615 | MS.gene36467 | 0.812595 | 3.92E-51 | -1.69E-46 |
MS.gene052823 | MS.gene36467 | 0.842811 | 2.06E-58 | -1.69E-46 |
MS.gene052825 | MS.gene36467 | 0.85141 | 9.04E-61 | -1.69E-46 |
MS.gene052982 | MS.gene36467 | 0.845688 | 3.48E-59 | -1.69E-46 |
MS.gene053203 | MS.gene36467 | 0.81721 | 3.71E-52 | -1.69E-46 |
MS.gene053207 | MS.gene36467 | 0.80702 | 6.20E-50 | -1.69E-46 |
MS.gene053436 | MS.gene36467 | 0.839467 | 1.56E-57 | -1.69E-46 |
MS.gene053480 | MS.gene36467 | 0.821544 | 3.82E-53 | -1.69E-46 |
MS.gene053632 | MS.gene36467 | 0.810211 | 1.29E-50 | -1.69E-46 |
MS.gene053824 | MS.gene36467 | 0.805206 | 1.49E-49 | -1.69E-46 |
MS.gene053873 | MS.gene36467 | 0.80198 | 6.97E-49 | -1.69E-46 |
MS.gene054408 | MS.gene36467 | 0.818491 | 1.91E-52 | -1.69E-46 |
MS.gene054600 | MS.gene36467 | 0.81028 | 1.25E-50 | -1.69E-46 |
MS.gene05470 | MS.gene36467 | 0.80852 | 2.98E-50 | -1.69E-46 |
MS.gene054884 | MS.gene36467 | -0.804642 | 1.96E-49 | -1.69E-46 |
MS.gene054927 | MS.gene36467 | 0.86977 | 2.41E-66 | -1.69E-46 |
MS.gene055206 | MS.gene36467 | 0.829136 | 6.10E-55 | -1.69E-46 |
MS.gene055289 | MS.gene36467 | 0.824562 | 7.55E-54 | -1.69E-46 |
MS.gene055370 | MS.gene36467 | 0.847846 | 8.93E-60 | -1.69E-46 |
MS.gene055539 | MS.gene36467 | 0.839264 | 1.76E-57 | -1.69E-46 |
MS.gene055741 | MS.gene36467 | 0.803314 | 3.70E-49 | -1.69E-46 |
MS.gene055744 | MS.gene36467 | 0.800923 | 1.15E-48 | -1.69E-46 |
MS.gene05589 | MS.gene36467 | 0.818896 | 1.54E-52 | -1.69E-46 |
MS.gene056040 | MS.gene36467 | 0.817364 | 3.43E-52 | -1.69E-46 |
MS.gene056166 | MS.gene36467 | 0.815589 | 8.56E-52 | -1.69E-46 |
MS.gene056351 | MS.gene36467 | 0.826739 | 2.30E-54 | -1.69E-46 |
MS.gene056877 | MS.gene36467 | 0.812684 | 3.75E-51 | -1.69E-46 |
MS.gene057048 | MS.gene36467 | 0.83415 | 3.54E-56 | -1.69E-46 |
MS.gene057196 | MS.gene36467 | 0.824317 | 8.62E-54 | -1.69E-46 |
MS.gene057289 | MS.gene36467 | 0.803903 | 2.79E-49 | -1.69E-46 |
MS.gene057332 | MS.gene36467 | 0.833874 | 4.15E-56 | -1.69E-46 |
MS.gene057658 | MS.gene36467 | 0.845691 | 3.47E-59 | -1.69E-46 |
MS.gene057749 | MS.gene36467 | 0.800926 | 1.15E-48 | -1.69E-46 |
MS.gene057823 | MS.gene36467 | 0.811526 | 6.70E-51 | -1.69E-46 |
MS.gene057831 | MS.gene36467 | 0.811598 | 6.46E-51 | -1.69E-46 |
MS.gene058338 | MS.gene36467 | 0.815706 | 8.06E-52 | -1.69E-46 |
MS.gene058376 | MS.gene36467 | 0.834445 | 2.99E-56 | -1.69E-46 |
MS.gene05837 | MS.gene36467 | 0.801929 | 7.14E-49 | -1.69E-46 |
MS.gene058444 | MS.gene36467 | 0.838701 | 2.46E-57 | -1.69E-46 |
MS.gene058544 | MS.gene36467 | 0.813359 | 2.66E-51 | -1.69E-46 |
MS.gene058700 | MS.gene36467 | 0.810731 | 9.96E-51 | -1.69E-46 |
MS.gene058838 | MS.gene36467 | 0.86029 | 2.29E-63 | -1.69E-46 |
MS.gene058948 | MS.gene36467 | 0.802892 | 4.52E-49 | -1.69E-46 |
MS.gene059023 | MS.gene36467 | 0.829078 | 6.29E-55 | -1.69E-46 |
MS.gene05914 | MS.gene36467 | 0.811907 | 5.53E-51 | -1.69E-46 |
MS.gene059303 | MS.gene36467 | 0.864139 | 1.51E-64 | -1.69E-46 |
MS.gene059512 | MS.gene36467 | 0.822409 | 2.41E-53 | -1.69E-46 |
MS.gene059667 | MS.gene36467 | 0.841148 | 5.66E-58 | -1.69E-46 |
MS.gene059683 | MS.gene36467 | 0.808602 | 2.86E-50 | -1.69E-46 |
MS.gene059718 | MS.gene36467 | 0.808625 | 2.83E-50 | -1.69E-46 |
MS.gene059756 | MS.gene36467 | 0.802321 | 5.93E-49 | -1.69E-46 |
MS.gene060485 | MS.gene36467 | 0.837951 | 3.84E-57 | -1.69E-46 |
MS.gene06077 | MS.gene36467 | 0.80022 | 1.60E-48 | -1.69E-46 |
MS.gene06092 | MS.gene36467 | 0.814573 | 1.44E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36467.t1 | MTR_4g094595 | 93.327 | 1004 | 33 | 6 | 1 | 986 | 1 | 988 | 0.0 | 1878 |
MS.gene36467.t1 | MTR_2g023320 | 47.000 | 500 | 209 | 10 | 482 | 973 | 467 | 918 | 5.74e-133 | 424 |
MS.gene36467.t1 | MTR_2g023320 | 47.000 | 500 | 209 | 10 | 482 | 973 | 651 | 1102 | 4.78e-132 | 426 |
MS.gene36467.t1 | MTR_5g030600 | 34.375 | 640 | 389 | 8 | 326 | 963 | 47 | 657 | 5.16e-114 | 366 |
MS.gene36467.t1 | MTR_5g430710 | 39.940 | 333 | 189 | 2 | 364 | 696 | 502 | 823 | 4.84e-73 | 259 |
MS.gene36467.t1 | MTR_6g012380 | 32.220 | 509 | 299 | 15 | 491 | 976 | 269 | 754 | 1.35e-64 | 233 |
MS.gene36467.t1 | MTR_3g091570 | 32.031 | 512 | 308 | 15 | 491 | 972 | 143 | 644 | 8.11e-62 | 223 |
MS.gene36467.t1 | MTR_3g091570 | 32.867 | 429 | 256 | 12 | 569 | 972 | 46 | 467 | 4.98e-54 | 196 |
MS.gene36467.t1 | MTR_8g024340 | 29.963 | 544 | 281 | 21 | 488 | 974 | 89 | 589 | 2.32e-47 | 180 |
MS.gene36467.t1 | MTR_1g078000 | 29.775 | 534 | 295 | 19 | 488 | 974 | 81 | 581 | 3.20e-43 | 167 |
MS.gene36467.t1 | MTR_7g037650 | 33.333 | 153 | 85 | 3 | 742 | 894 | 95 | 230 | 1.94e-16 | 84.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36467.t1 | AT4G18240 | 70.575 | 904 | 247 | 6 | 80 | 983 | 152 | 1036 | 0.0 | 1308 |
MS.gene36467.t1 | AT1G11720 | 47.773 | 494 | 203 | 9 | 487 | 973 | 592 | 1037 | 8.46e-135 | 432 |
MS.gene36467.t1 | AT1G11720 | 47.773 | 494 | 203 | 9 | 487 | 973 | 644 | 1089 | 2.28e-134 | 432 |
MS.gene36467.t1 | AT5G65685 | 39.571 | 326 | 188 | 3 | 422 | 747 | 47 | 363 | 1.45e-77 | 259 |
MS.gene36467.t1 | AT5G65685 | 39.571 | 326 | 188 | 3 | 422 | 747 | 47 | 363 | 1.45e-77 | 259 |
MS.gene36467.t1 | AT5G65685 | 39.571 | 326 | 188 | 3 | 422 | 747 | 47 | 363 | 1.45e-77 | 259 |
MS.gene36467.t1 | AT5G65685 | 39.571 | 326 | 188 | 3 | 422 | 747 | 47 | 363 | 1.45e-77 | 259 |
MS.gene36467.t1 | AT5G65685 | 39.571 | 326 | 188 | 3 | 422 | 747 | 47 | 363 | 1.45e-77 | 259 |
MS.gene36467.t1 | AT5G65685 | 39.571 | 326 | 188 | 3 | 422 | 747 | 47 | 363 | 1.45e-77 | 259 |
MS.gene36467.t1 | AT5G65685 | 39.571 | 326 | 188 | 3 | 422 | 747 | 47 | 363 | 1.45e-77 | 259 |
MS.gene36467.t1 | AT5G65685 | 39.571 | 326 | 188 | 3 | 422 | 747 | 125 | 441 | 6.15e-77 | 260 |
MS.gene36467.t1 | AT5G65685 | 39.571 | 326 | 188 | 3 | 422 | 747 | 114 | 430 | 8.01e-77 | 259 |
MS.gene36467.t1 | AT5G65685 | 39.571 | 326 | 188 | 3 | 422 | 747 | 153 | 469 | 8.13e-77 | 260 |
MS.gene36467.t1 | AT5G65685 | 39.571 | 326 | 188 | 3 | 422 | 747 | 164 | 480 | 4.38e-76 | 259 |
MS.gene36467.t1 | AT5G65685 | 39.571 | 326 | 188 | 3 | 422 | 747 | 170 | 486 | 5.28e-76 | 259 |
MS.gene36467.t1 | AT3G01180 | 32.353 | 510 | 297 | 16 | 491 | 976 | 303 | 788 | 1.23e-63 | 231 |
MS.gene36467.t1 | AT5G24300 | 30.839 | 548 | 343 | 15 | 453 | 973 | 103 | 641 | 6.41e-61 | 220 |
MS.gene36467.t1 | AT5G24300 | 30.839 | 548 | 343 | 15 | 453 | 973 | 103 | 641 | 6.41e-61 | 220 |
MS.gene36467.t1 | AT1G32900 | 30.402 | 523 | 306 | 18 | 488 | 974 | 83 | 583 | 1.22e-44 | 172 |
Find 191 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCATAATAGGTTGGTGGCTT+GGG | 0.159950 | 4.1:-18569942 | MS.gene36467:intron |
ATATTGCATGCAGTCATATT+TGG | 0.165615 | 4.1:+18569854 | None:intergenic |
TCAAAGGAAGGTTGATAAAT+TGG | 0.177835 | 4.1:-18571364 | MS.gene36467:CDS |
CTAGCTGAATTTAATCCTTT+TGG | 0.194710 | 4.1:+18569275 | None:intergenic |
GAATCATCGTGATCAGATTT+TGG | 0.207155 | 4.1:+18572966 | None:intergenic |
AAGTTCATCGGTGTTCTTAA+TGG | 0.242169 | 4.1:-18568101 | MS.gene36467:CDS |
CCTCCACAGTTCTCACTTCT+TGG | 0.247602 | 4.1:+18568974 | None:intergenic |
ATCATCCTGATAAGTTCTTT+TGG | 0.274259 | 4.1:-18569543 | MS.gene36467:CDS |
CAATTATTGCTTCTAATTGA+TGG | 0.276345 | 4.1:-18571087 | MS.gene36467:CDS |
TCCATAATAGGTTGGTGGCT+TGG | 0.280060 | 4.1:-18569943 | MS.gene36467:intron |
CTCTGCTCCGTTTACATTCA+AGG | 0.280109 | 4.1:+18572154 | None:intergenic |
AAGATATGCCGTGGGAATTC+TGG | 0.284215 | 4.1:-18571113 | MS.gene36467:CDS |
TCAAGGGAAAGCAGAGAATA+AGG | 0.293067 | 4.1:-18568009 | MS.gene36467:CDS |
TACGCGCAATTAATCTCTTC+AGG | 0.302897 | 4.1:-18564925 | MS.gene36467:CDS |
TTTGCCAGGCTCCTTTATAC+TGG | 0.304391 | 4.1:-18569310 | MS.gene36467:intron |
GCTATGCTAACCTGTCATTT+AGG | 0.323249 | 4.1:+18565576 | None:intergenic |
CATGTCAGACGCAGCATAAA+TGG | 0.325896 | 4.1:+18566075 | None:intergenic |
GAGGCTATATCTGCATTTCT+TGG | 0.334967 | 4.1:-18570946 | MS.gene36467:CDS |
GTGGAATTATTATTAGTATC+AGG | 0.344166 | 4.1:+18572912 | None:intergenic |
AGACATCCTTCTTATAAATC+AGG | 0.344850 | 4.1:-18571961 | MS.gene36467:CDS |
ACAAGATTGGTTCCACAAAA+AGG | 0.345815 | 4.1:-18567286 | MS.gene36467:CDS |
TGATGAACGTTTGGTGGTAT+TGG | 0.348885 | 4.1:-18571592 | MS.gene36467:CDS |
GAGTTGTCCTGCATTCTATC+TGG | 0.360248 | 4.1:+18569158 | None:intergenic |
GAGTATTAGTGATGTATATA+TGG | 0.362578 | 4.1:-18570992 | MS.gene36467:CDS |
TATTGCATGCAGTCATATTT+GGG | 0.368001 | 4.1:+18569855 | None:intergenic |
CCTCTCCAAAAGAACTTATC+AGG | 0.369301 | 4.1:+18569538 | None:intergenic |
TCATGACAATGAATGATATC+TGG | 0.373989 | 4.1:+18569427 | None:intergenic |
GCAGCAAAAGATAAAACTAT+TGG | 0.374806 | 4.1:-18571271 | MS.gene36467:CDS |
GGAGGTCAATTTGTTCTACT+TGG | 0.376408 | 4.1:-18567220 | MS.gene36467:CDS |
CCTTACTGAGGAGCTTAATT+CGG | 0.377587 | 4.1:-18571688 | MS.gene36467:CDS |
ATCTGGGTTGGCACTGTTGA+AGG | 0.384950 | 4.1:-18569666 | MS.gene36467:intron |
ATGGTATTGACACTGATATA+TGG | 0.386658 | 4.1:-18568082 | MS.gene36467:CDS |
TGTTGTCATGATTCTTGAAA+TGG | 0.390398 | 4.1:+18566137 | None:intergenic |
CAACCTTCCTTTGAAGATCC+TGG | 0.399688 | 4.1:+18571373 | None:intergenic |
CATAATAGGTTGGTGGCTTG+GGG | 0.403639 | 4.1:-18569941 | MS.gene36467:intron |
ATACAATACCTTCACAGTTT+CGG | 0.403883 | 4.1:-18565471 | MS.gene36467:CDS |
ATATCATTCATTGTCATGAT+TGG | 0.404496 | 4.1:-18569423 | MS.gene36467:CDS |
TTAGTATCAGGCACTACAAT+TGG | 0.406866 | 4.1:+18572924 | None:intergenic |
ACAAGTTGCTTCCAACTCTC+AGG | 0.410557 | 4.1:+18564896 | None:intergenic |
GACAGTTCAGATGCATCTTC+CGG | 0.410826 | 4.1:+18571507 | None:intergenic |
TACAAAATGCAGGGAGGTAA+AGG | 0.411092 | 4.1:-18568155 | MS.gene36467:intron |
CTCACTTCTTGGGCGTAAGT+AGG | 0.414308 | 4.1:+18568985 | None:intergenic |
GCATATATGTCCCAGTATAA+AGG | 0.416270 | 4.1:+18569299 | None:intergenic |
GCGTAATGAGTTGGCCGAAA+AGG | 0.418873 | 4.1:-18571769 | MS.gene36467:CDS |
CCGAATTAAGCTCCTCAGTA+AGG | 0.421532 | 4.1:+18571688 | None:intergenic |
AGGCTATATCTGCATTTCTT+GGG | 0.422991 | 4.1:-18570945 | MS.gene36467:CDS |
GAAGATCATTTGCACTGTAC+TGG | 0.432795 | 4.1:+18568030 | None:intergenic |
ATGACCTGGATATGTGGAAC+TGG | 0.432799 | 4.1:+18567190 | None:intergenic |
ATGCAAGCATTTATCAGATA+AGG | 0.434574 | 4.1:-18571469 | MS.gene36467:CDS |
AAATAGGCCTTGAATGTAAA+CGG | 0.437824 | 4.1:-18572161 | MS.gene36467:intron |
TTTCTTCTGCAGATGTTAAG+AGG | 0.439149 | 4.1:-18567962 | MS.gene36467:CDS |
CTCCACAGTTCTCACTTCTT+GGG | 0.439457 | 4.1:+18568975 | None:intergenic |
TCACTTCTTGGGCGTAAGTA+GGG | 0.443182 | 4.1:+18568986 | None:intergenic |
TGGGGCTCAATGAAATAAAC+AGG | 0.444627 | 4.1:+18569565 | None:intergenic |
GGTTGGCTGCATAACAAGAT+TGG | 0.444710 | 4.1:-18567299 | MS.gene36467:CDS |
TCAAGAATCATGACAACATA+AGG | 0.445108 | 4.1:-18566132 | MS.gene36467:CDS |
TATAGATGTCAGCTTCTTCA+AGG | 0.445676 | 4.1:+18571334 | None:intergenic |
GAGATTAATTGCGCGTACTA+AGG | 0.453266 | 4.1:+18564931 | None:intergenic |
CAAGAACAATGATGAACGTT+TGG | 0.455146 | 4.1:-18571601 | MS.gene36467:CDS |
CTGTACTGGACTTCAAGAAA+TGG | 0.459297 | 4.1:+18568044 | None:intergenic |
AGTGGGTAGAGAGGGTTGAA+TGG | 0.459646 | 4.1:+18568129 | None:intergenic |
CTTGAGTTTCTTCTTCAAGC+TGG | 0.459726 | 4.1:-18569457 | MS.gene36467:CDS |
TGAAAGAATGGCTTCGAAGC+TGG | 0.461646 | 4.1:-18573276 | None:intergenic |
CAGACGCAGCATAAATGGTA+TGG | 0.463540 | 4.1:+18566080 | None:intergenic |
TATCTGGTCTGTTTAGATGC+TGG | 0.464432 | 4.1:+18569174 | None:intergenic |
AAAAGAACTTATCAGGATGA+TGG | 0.466946 | 4.1:+18569545 | None:intergenic |
CGTAATGAGTTGGCCGAAAA+GGG | 0.468079 | 4.1:-18571768 | MS.gene36467:CDS |
TGCACTTGAAGATCTTCAAA+AGG | 0.468986 | 4.1:-18571928 | MS.gene36467:CDS |
ACAGTTGTCTGGTGGTCAAT+TGG | 0.469922 | 4.1:-18572123 | MS.gene36467:CDS |
CATTACGCAGTTTCTCCAAC+TGG | 0.471171 | 4.1:+18571784 | None:intergenic |
ATTCTCTAGAGAGAATTTGA+AGG | 0.471383 | 4.1:-18566169 | MS.gene36467:intron |
CTCTAGCCTGATTTATAAGA+AGG | 0.471879 | 4.1:+18571955 | None:intergenic |
GAAAATATGACCTGGATATG+TGG | 0.475465 | 4.1:+18567184 | None:intergenic |
TCCATTGACGGAGGAGGAGG+AGG | 0.477653 | 4.1:-18573002 | MS.gene36467:CDS |
AATATATCTAACACTGGAGC+TGG | 0.478866 | 4.1:-18567242 | MS.gene36467:CDS |
GAATGTAAACGGAGCAGAGC+AGG | 0.479325 | 4.1:-18572150 | MS.gene36467:CDS |
CAGATGATTTCAATGAGATA+TGG | 0.481201 | 4.1:-18565629 | MS.gene36467:CDS |
ATCAAAACTGTCAATATCTC+CGG | 0.481623 | 4.1:-18571526 | MS.gene36467:CDS |
TATTGCTTCTAATTGATGGT+TGG | 0.484247 | 4.1:-18571083 | MS.gene36467:CDS |
TACAGTGCAAATGATCTTCA+AGG | 0.485397 | 4.1:-18568026 | MS.gene36467:CDS |
ACGTTTGGTGGTATTGGAAA+AGG | 0.486193 | 4.1:-18571586 | MS.gene36467:CDS |
ATTCTTGCAGGCTTTGGATG+TGG | 0.488180 | 4.1:-18569730 | MS.gene36467:intron |
CCATCGATCTTTGAACCTTG+TGG | 0.489475 | 4.1:-18566043 | MS.gene36467:CDS |
TTGTTTCCATAATAGGTTGG+TGG | 0.497200 | 4.1:-18569948 | MS.gene36467:intron |
CTTCAAGCACTATAACGGCT+TGG | 0.498601 | 4.1:+18571400 | None:intergenic |
AAGTAAAGCATTGCAAAAGA+AGG | 0.499408 | 4.1:-18569901 | MS.gene36467:CDS |
CTGAAGCTGCTGCAGTCCCT+TGG | 0.506177 | 4.1:+18569222 | None:intergenic |
AGAGATGGCACCAGTGGCTA+AGG | 0.508859 | 4.1:-18570797 | MS.gene36467:intron |
AAAGAACTTATCAGGATGAT+GGG | 0.509934 | 4.1:+18569546 | None:intergenic |
TGCGACACCACCGTATTCTC+AGG | 0.511703 | 4.1:-18573157 | MS.gene36467:intron |
ATATGAATCACATATAATCC+TGG | 0.512442 | 4.1:+18570826 | None:intergenic |
GAGCAGGCTGAACAGTTGTC+TGG | 0.513578 | 4.1:-18572134 | MS.gene36467:CDS |
TCAAGAAATGGATCAGTAGC+AGG | 0.515259 | 4.1:+18568056 | None:intergenic |
AAACTGGTGGCCTAAATGAC+AGG | 0.519105 | 4.1:-18565586 | MS.gene36467:intron |
AGGTAAGGTACCTGAGAATA+CGG | 0.519780 | 4.1:+18573147 | None:intergenic |
AAGTCCAGTTCCACATATCC+AGG | 0.520172 | 4.1:-18567194 | MS.gene36467:intron |
GCGGATTGAAGTTGCTGACC+AGG | 0.521108 | 4.1:-18571835 | MS.gene36467:CDS |
TTCTTCAGCAGCACAATATG+AGG | 0.521236 | 4.1:-18564840 | MS.gene36467:CDS |
TGCATGAGCTTCATAATGAT+AGG | 0.529529 | 4.1:-18571719 | MS.gene36467:CDS |
GTAATAGAGTCATACTTTGA+TGG | 0.529982 | 4.1:-18569708 | MS.gene36467:CDS |
ATTGACGGAGGAGGAGGAGG+AGG | 0.531028 | 4.1:-18572999 | MS.gene36467:CDS |
GACTGCAGCAGCTTCAGAGT+TGG | 0.533533 | 4.1:-18569216 | MS.gene36467:CDS |
TTGCCAGGCTCCTTTATACT+GGG | 0.533609 | 4.1:-18569309 | MS.gene36467:intron |
CCTCCTCCGTCAATGGAAGA+TGG | 0.534161 | 4.1:+18573008 | None:intergenic |
TGGGACATATATGCCCCAAA+AGG | 0.536974 | 4.1:-18569290 | MS.gene36467:CDS |
TGAACAGCCATACCTGTGTT+AGG | 0.537120 | 4.1:+18566020 | None:intergenic |
ACGCGCAATTAATCTCTTCA+GGG | 0.538504 | 4.1:-18564924 | MS.gene36467:CDS |
TCTTCCATTGACGGAGGAGG+AGG | 0.538753 | 4.1:-18573005 | MS.gene36467:CDS |
TCAGGGACGACCCTGAGAGT+TGG | 0.541248 | 4.1:-18564907 | MS.gene36467:CDS |
TGAAGGGGATACCGAGGGTG+TGG | 0.545888 | 4.1:+18572893 | None:intergenic |
CGAACTCATGGAGGGCCAGT+TGG | 0.546632 | 4.1:-18571799 | MS.gene36467:CDS |
TCCCACGGCATATCTTCCAC+TGG | 0.546811 | 4.1:+18571120 | None:intergenic |
ATACCTTCACAGTTTCGGAA+TGG | 0.546994 | 4.1:-18565466 | MS.gene36467:CDS |
AAGACCTAGATTCTTTCTCA+AGG | 0.548744 | 4.1:+18567983 | None:intergenic |
TTGGAAGCAACTTGTTCAGA+AGG | 0.549083 | 4.1:-18564888 | MS.gene36467:CDS |
GAAGCCTTGAGAAAGAATCT+AGG | 0.549769 | 4.1:-18567987 | MS.gene36467:CDS |
CACTTCTTGGGCGTAAGTAG+GGG | 0.550373 | 4.1:+18568987 | None:intergenic |
GATTCATATTGCAGCAGAGA+TGG | 0.551113 | 4.1:-18570812 | MS.gene36467:CDS |
CCATCTTCCATTGACGGAGG+AGG | 0.551863 | 4.1:-18573008 | MS.gene36467:CDS |
TGCAGATGTTAAGAGGCCAT+TGG | 0.553063 | 4.1:-18567955 | MS.gene36467:intron |
AAAGACGCATGTCGAACTCA+TGG | 0.555398 | 4.1:-18571811 | MS.gene36467:CDS |
AAGCACTATAACGGCTTGGT+CGG | 0.559921 | 4.1:+18571404 | None:intergenic |
ATAATAGGTTGGTGGCTTGG+GGG | 0.560247 | 4.1:-18569940 | MS.gene36467:intron |
GAACAATGATGAACGTTTGG+TGG | 0.561740 | 4.1:-18571598 | MS.gene36467:CDS |
AGTAAAGCATTGCAAAAGAA+GGG | 0.562152 | 4.1:-18569900 | MS.gene36467:CDS |
CGAATTAAGCTCCTCAGTAA+GGG | 0.568634 | 4.1:+18571689 | None:intergenic |
CAAAAGGATTAAATTCAGCT+AGG | 0.570834 | 4.1:-18569274 | MS.gene36467:CDS |
GGAGAAACTGCGTAATGAGT+TGG | 0.571012 | 4.1:-18571778 | MS.gene36467:CDS |
ATATATCTAACACTGGAGCT+GGG | 0.575756 | 4.1:-18567241 | MS.gene36467:CDS |
AAGAAAACCAGGATCTTCAA+AGG | 0.577026 | 4.1:-18571380 | MS.gene36467:CDS |
CATACCTGTGTTAGGCCACA+AGG | 0.577489 | 4.1:+18566028 | None:intergenic |
AGACGCAGCATAAATGGTAT+GGG | 0.579304 | 4.1:+18566081 | None:intergenic |
AAACCAGGATCTTCAAAGGA+AGG | 0.581100 | 4.1:-18571376 | MS.gene36467:CDS |
TCCCTTGGTACTCAAAGTTG+TGG | 0.585289 | 4.1:+18569237 | None:intergenic |
GTCATGATTCTTGAAATGGT+TGG | 0.587756 | 4.1:+18566141 | None:intergenic |
TCACAGCCATCTTCCATTGA+CGG | 0.589410 | 4.1:-18573014 | MS.gene36467:CDS |
GATGTATATATGGCTTGCAA+AGG | 0.591249 | 4.1:-18570982 | MS.gene36467:CDS |
ATAGATGTCAGCTTCTTCAA+GGG | 0.592685 | 4.1:+18571335 | None:intergenic |
TAATAATAATTCCACACCCT+CGG | 0.593918 | 4.1:-18572904 | MS.gene36467:intron |
TACTTAAAGTCTGTGACTAG+AGG | 0.596902 | 4.1:-18564812 | MS.gene36467:CDS |
CCACAAGGTTCAAAGATCGA+TGG | 0.598033 | 4.1:+18566043 | None:intergenic |
TAACGACTTAGAGATGAGGT+TGG | 0.600003 | 4.1:-18571871 | MS.gene36467:CDS |
AATCCATTCCGAAACTGTGA+AGG | 0.601972 | 4.1:+18565463 | None:intergenic |
GATGAATTCACCTTAGCCAC+TGG | 0.602207 | 4.1:+18570787 | None:intergenic |
TGCAGCAGAGATGGCACCAG+TGG | 0.603229 | 4.1:-18570803 | MS.gene36467:CDS |
ACAGTGCAAATGATCTTCAA+GGG | 0.603538 | 4.1:-18568025 | MS.gene36467:CDS |
AGAAAGCAAGAGAAAGACGC+TGG | 0.604545 | 4.1:-18571148 | MS.gene36467:CDS |
AACCAGTGGAAGATATGCCG+TGG | 0.606256 | 4.1:-18571122 | MS.gene36467:CDS |
CAAGTTGCTTCCAACTCTCA+GGG | 0.608146 | 4.1:+18564897 | None:intergenic |
TGAACCTTGTGGCCTAACAC+AGG | 0.608845 | 4.1:-18566032 | MS.gene36467:intron |
GCCACAACTTTGAGTACCAA+GGG | 0.609655 | 4.1:-18569238 | MS.gene36467:CDS |
TATCAGGCACTACAATTGGA+CGG | 0.609853 | 4.1:+18572928 | None:intergenic |
TGGAGAGCACATTACGCGGT+GGG | 0.609956 | 4.1:+18573199 | None:intergenic |
GTCTGTGACTAGAGGAAGAG+CGG | 0.614440 | 4.1:-18564804 | MS.gene36467:CDS |
TAAGCTCCTCAGTAAGGGAA+CGG | 0.616366 | 4.1:+18571694 | None:intergenic |
TATAGTGCTTGAAGAAAACC+AGG | 0.617056 | 4.1:-18571391 | MS.gene36467:CDS |
GGCTTACATCGTCTGCAACA+AGG | 0.618089 | 4.1:-18570924 | MS.gene36467:intron |
ATTTGTGAATGCTGATGAGA+AGG | 0.621507 | 4.1:-18565437 | MS.gene36467:intron |
TGATAGAGTCAATTCTGTCA+AGG | 0.625322 | 4.1:-18569129 | MS.gene36467:intron |
AAACAGACCAGATAGAATGC+AGG | 0.626984 | 4.1:-18569165 | MS.gene36467:CDS |
CTTGCATTCAACTCTAAGTG+TGG | 0.631108 | 4.1:+18571485 | None:intergenic |
GCTCAATGAAATAAACAGGA+AGG | 0.632993 | 4.1:+18569569 | None:intergenic |
GTGTGCTGCAATTTGAGCAG+CGG | 0.634056 | 4.1:-18573242 | MS.gene36467:CDS |
TGCCACAACTTTGAGTACCA+AGG | 0.639727 | 4.1:-18569239 | MS.gene36467:CDS |
GAAGAAACTCAAGTGCTACA+CGG | 0.642151 | 4.1:+18569467 | None:intergenic |
ACATGCAATATATCTAACAC+TGG | 0.642390 | 4.1:-18567248 | MS.gene36467:CDS |
GGGTAGAGAGGGTTGAATGG+AGG | 0.648233 | 4.1:+18568132 | None:intergenic |
ACGCATGTCGAACTCATGGA+GGG | 0.649812 | 4.1:-18571807 | MS.gene36467:CDS |
AAAGACGCTGGATGAACCAG+TGG | 0.651059 | 4.1:-18571136 | MS.gene36467:CDS |
GACGCATGTCGAACTCATGG+AGG | 0.654000 | 4.1:-18571808 | MS.gene36467:CDS |
AAGAACTTATCAGGATGATG+GGG | 0.657540 | 4.1:+18569547 | None:intergenic |
TTCTATGGCATTCTTCAGAG+AGG | 0.658220 | 4.1:+18571650 | None:intergenic |
ATGGAGAGCACATTACGCGG+TGG | 0.659091 | 4.1:+18573198 | None:intergenic |
GCTTCAGAGTTGGAATCATG+TGG | 0.661516 | 4.1:-18569206 | MS.gene36467:CDS |
AATTGACTCCAGAATTCCCA+CGG | 0.662373 | 4.1:+18571105 | None:intergenic |
CAGGCTGAACAGTTGTCTGG+TGG | 0.665061 | 4.1:-18572131 | MS.gene36467:CDS |
AAGTTAACGACTTAGAGATG+AGG | 0.665068 | 4.1:-18571875 | MS.gene36467:CDS |
ACCAGTGGAAGATATGCCGT+GGG | 0.676148 | 4.1:-18571121 | MS.gene36467:CDS |
ATTTAAAATACAGCTCAATG+AGG | 0.677221 | 4.1:-18571625 | MS.gene36467:CDS |
TGGGAAGTACGATTTCAACA+AGG | 0.682155 | 4.1:+18569874 | None:intergenic |
ATTGTTGCTAGATAAAGCAA+CGG | 0.685275 | 4.1:-18571433 | MS.gene36467:CDS |
CGCCCAAGAAGTGAGAACTG+TGG | 0.687875 | 4.1:-18568977 | MS.gene36467:CDS |
CCAAGAAGTGAGAACTGTGG+AGG | 0.689930 | 4.1:-18568974 | MS.gene36467:intron |
TAGGATCCGTTCCCTTACTG+AGG | 0.694684 | 4.1:-18571700 | MS.gene36467:CDS |
CAGCCATCTTCCATTGACGG+AGG | 0.700118 | 4.1:-18573011 | MS.gene36467:CDS |
TGCATGCAATATGACCGCGT+TGG | 0.706322 | 4.1:-18569843 | MS.gene36467:CDS |
GAAATGGAGAGCACATTACG+CGG | 0.706474 | 4.1:+18573195 | None:intergenic |
TATCTAACACTGGAGCTGGG+AGG | 0.740873 | 4.1:-18567238 | MS.gene36467:CDS |
TAAGGTACCTGAGAATACGG+TGG | 0.758925 | 4.1:+18573150 | None:intergenic |
GGTTGGCTGAGACTGATGCG+CGG | 0.781736 | 4.1:-18571854 | MS.gene36467:CDS |
ATACTCTTAAATCACCAACG+CGG | 0.863183 | 4.1:+18569829 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 18564790 | 18573291 | 18564790 | ID=MS.gene36467 |
chr4.1 | mRNA | 18564790 | 18573291 | 18564790 | ID=MS.gene36467.t1;Parent=MS.gene36467 |
chr4.1 | exon | 18573158 | 18573291 | 18573158 | ID=MS.gene36467.t1.exon1;Parent=MS.gene36467.t1 |
chr4.1 | CDS | 18573158 | 18573291 | 18573158 | ID=cds.MS.gene36467.t1;Parent=MS.gene36467.t1 |
chr4.1 | exon | 18572905 | 18573079 | 18572905 | ID=MS.gene36467.t1.exon2;Parent=MS.gene36467.t1 |
chr4.1 | CDS | 18572905 | 18573079 | 18572905 | ID=cds.MS.gene36467.t1;Parent=MS.gene36467.t1 |
chr4.1 | exon | 18572087 | 18572177 | 18572087 | ID=MS.gene36467.t1.exon3;Parent=MS.gene36467.t1 |
chr4.1 | CDS | 18572087 | 18572177 | 18572087 | ID=cds.MS.gene36467.t1;Parent=MS.gene36467.t1 |
chr4.1 | exon | 18570925 | 18571981 | 18570925 | ID=MS.gene36467.t1.exon4;Parent=MS.gene36467.t1 |
chr4.1 | CDS | 18570925 | 18571981 | 18570925 | ID=cds.MS.gene36467.t1;Parent=MS.gene36467.t1 |
chr4.1 | exon | 18570798 | 18570849 | 18570798 | ID=MS.gene36467.t1.exon5;Parent=MS.gene36467.t1 |
chr4.1 | CDS | 18570798 | 18570849 | 18570798 | ID=cds.MS.gene36467.t1;Parent=MS.gene36467.t1 |
chr4.1 | exon | 18569833 | 18569955 | 18569833 | ID=MS.gene36467.t1.exon6;Parent=MS.gene36467.t1 |
chr4.1 | CDS | 18569833 | 18569955 | 18569833 | ID=cds.MS.gene36467.t1;Parent=MS.gene36467.t1 |
chr4.1 | exon | 18569667 | 18569742 | 18569667 | ID=MS.gene36467.t1.exon7;Parent=MS.gene36467.t1 |
chr4.1 | CDS | 18569667 | 18569742 | 18569667 | ID=cds.MS.gene36467.t1;Parent=MS.gene36467.t1 |
chr4.1 | exon | 18569408 | 18569592 | 18569408 | ID=MS.gene36467.t1.exon8;Parent=MS.gene36467.t1 |
chr4.1 | CDS | 18569408 | 18569592 | 18569408 | ID=cds.MS.gene36467.t1;Parent=MS.gene36467.t1 |
chr4.1 | exon | 18569130 | 18569324 | 18569130 | ID=MS.gene36467.t1.exon9;Parent=MS.gene36467.t1 |
chr4.1 | CDS | 18569130 | 18569324 | 18569130 | ID=cds.MS.gene36467.t1;Parent=MS.gene36467.t1 |
chr4.1 | exon | 18568975 | 18569046 | 18568975 | ID=MS.gene36467.t1.exon10;Parent=MS.gene36467.t1 |
chr4.1 | CDS | 18568975 | 18569046 | 18568975 | ID=cds.MS.gene36467.t1;Parent=MS.gene36467.t1 |
chr4.1 | exon | 18567956 | 18568165 | 18567956 | ID=MS.gene36467.t1.exon11;Parent=MS.gene36467.t1 |
chr4.1 | CDS | 18567956 | 18568165 | 18567956 | ID=cds.MS.gene36467.t1;Parent=MS.gene36467.t1 |
chr4.1 | exon | 18567195 | 18567320 | 18567195 | ID=MS.gene36467.t1.exon12;Parent=MS.gene36467.t1 |
chr4.1 | CDS | 18567195 | 18567320 | 18567195 | ID=cds.MS.gene36467.t1;Parent=MS.gene36467.t1 |
chr4.1 | exon | 18566033 | 18566182 | 18566033 | ID=MS.gene36467.t1.exon13;Parent=MS.gene36467.t1 |
chr4.1 | CDS | 18566033 | 18566182 | 18566033 | ID=cds.MS.gene36467.t1;Parent=MS.gene36467.t1 |
chr4.1 | exon | 18565587 | 18565648 | 18565587 | ID=MS.gene36467.t1.exon14;Parent=MS.gene36467.t1 |
chr4.1 | CDS | 18565587 | 18565648 | 18565587 | ID=cds.MS.gene36467.t1;Parent=MS.gene36467.t1 |
chr4.1 | exon | 18565438 | 18565513 | 18565438 | ID=MS.gene36467.t1.exon15;Parent=MS.gene36467.t1 |
chr4.1 | CDS | 18565438 | 18565513 | 18565438 | ID=cds.MS.gene36467.t1;Parent=MS.gene36467.t1 |
chr4.1 | exon | 18564790 | 18564966 | 18564790 | ID=MS.gene36467.t1.exon16;Parent=MS.gene36467.t1 |
chr4.1 | CDS | 18564790 | 18564966 | 18564790 | ID=cds.MS.gene36467.t1;Parent=MS.gene36467.t1 |
Gene Sequence |
Protein sequence |