Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37468.t1 | XP_013461801.1 | 96.7 | 397 | 13 | 0 | 1 | 397 | 1 | 397 | 2.30E-198 | 701.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37468.t1 | Q9SY57 | 48.8 | 391 | 189 | 4 | 8 | 390 | 14 | 401 | 4.9e-96 | 352.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37468.t1 | A0A072V2F7 | 96.7 | 397 | 13 | 0 | 1 | 397 | 1 | 397 | 1.7e-198 | 701.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04915 | MS.gene37468 | 0.822167 | 2.74E-53 | -1.69E-46 |
| MS.gene04917 | MS.gene37468 | 0.818093 | 2.35E-52 | -1.69E-46 |
| MS.gene049801 | MS.gene37468 | 0.802837 | 4.64E-49 | -1.69E-46 |
| MS.gene04991 | MS.gene37468 | -0.832474 | 9.26E-56 | -1.69E-46 |
| MS.gene049983 | MS.gene37468 | 0.804862 | 1.76E-49 | -1.69E-46 |
| MS.gene050114 | MS.gene37468 | 0.814873 | 1.23E-51 | -1.69E-46 |
| MS.gene050317 | MS.gene37468 | 0.810495 | 1.12E-50 | -1.69E-46 |
| MS.gene050361 | MS.gene37468 | 0.82172 | 3.48E-53 | -1.69E-46 |
| MS.gene050623 | MS.gene37468 | -0.803301 | 3.72E-49 | -1.69E-46 |
| MS.gene050629 | MS.gene37468 | -0.827722 | 1.34E-54 | -1.69E-46 |
| MS.gene050654 | MS.gene37468 | 0.882238 | 1.23E-70 | -1.69E-46 |
| MS.gene050762 | MS.gene37468 | 0.848833 | 4.76E-60 | -1.69E-46 |
| MS.gene050763 | MS.gene37468 | 0.848306 | 6.67E-60 | -1.69E-46 |
| MS.gene050826 | MS.gene37468 | 0.81016 | 1.32E-50 | -1.69E-46 |
| MS.gene050941 | MS.gene37468 | 0.837488 | 5.05E-57 | -1.69E-46 |
| MS.gene051122 | MS.gene37468 | 0.815618 | 8.43E-52 | -1.69E-46 |
| MS.gene051184 | MS.gene37468 | 0.805097 | 1.57E-49 | -1.69E-46 |
| MS.gene051541 | MS.gene37468 | 0.809854 | 1.54E-50 | -1.69E-46 |
| MS.gene051831 | MS.gene37468 | 0.808754 | 2.65E-50 | -1.69E-46 |
| MS.gene052434 | MS.gene37468 | 0.819062 | 1.41E-52 | -1.69E-46 |
| MS.gene052674 | MS.gene37468 | 0.80658 | 7.68E-50 | -1.69E-46 |
| MS.gene052675 | MS.gene37468 | 0.80083 | 1.20E-48 | -1.69E-46 |
| MS.gene052677 | MS.gene37468 | 0.81021 | 1.29E-50 | -1.69E-46 |
| MS.gene053058 | MS.gene37468 | 0.802947 | 4.40E-49 | -1.69E-46 |
| MS.gene053726 | MS.gene37468 | 0.829653 | 4.56E-55 | -1.69E-46 |
| MS.gene054379 | MS.gene37468 | 0.839721 | 1.34E-57 | -1.69E-46 |
| MS.gene054479 | MS.gene37468 | 0.816496 | 5.37E-52 | -1.69E-46 |
| MS.gene054823 | MS.gene37468 | 0.814608 | 1.41E-51 | -1.69E-46 |
| MS.gene055222 | MS.gene37468 | 0.800547 | 1.37E-48 | -1.69E-46 |
| MS.gene055311 | MS.gene37468 | 0.841351 | 5.01E-58 | -1.69E-46 |
| MS.gene055313 | MS.gene37468 | 0.811407 | 7.11E-51 | -1.69E-46 |
| MS.gene055314 | MS.gene37468 | 0.814843 | 1.25E-51 | -1.69E-46 |
| MS.gene055442 | MS.gene37468 | 0.807206 | 5.66E-50 | -1.69E-46 |
| MS.gene055864 | MS.gene37468 | 0.839019 | 2.03E-57 | -1.69E-46 |
| MS.gene055926 | MS.gene37468 | 0.806645 | 7.44E-50 | -1.69E-46 |
| MS.gene056045 | MS.gene37468 | 0.820414 | 6.95E-53 | -1.69E-46 |
| MS.gene056181 | MS.gene37468 | 0.825023 | 5.88E-54 | -1.69E-46 |
| MS.gene056480 | MS.gene37468 | 0.828432 | 9.02E-55 | -1.69E-46 |
| MS.gene056787 | MS.gene37468 | 0.812033 | 5.20E-51 | -1.69E-46 |
| MS.gene056849 | MS.gene37468 | 0.842098 | 3.18E-58 | -1.69E-46 |
| MS.gene05761 | MS.gene37468 | 0.824371 | 8.37E-54 | -1.69E-46 |
| MS.gene058081 | MS.gene37468 | 0.848219 | 7.05E-60 | -1.69E-46 |
| MS.gene058429 | MS.gene37468 | 0.840438 | 8.69E-58 | -1.69E-46 |
| MS.gene058638 | MS.gene37468 | 0.814888 | 1.22E-51 | -1.69E-46 |
| MS.gene058639 | MS.gene37468 | 0.816688 | 4.86E-52 | -1.69E-46 |
| MS.gene058646 | MS.gene37468 | 0.801902 | 7.23E-49 | -1.69E-46 |
| MS.gene058758 | MS.gene37468 | 0.842556 | 2.41E-58 | -1.69E-46 |
| MS.gene059170 | MS.gene37468 | 0.806184 | 9.30E-50 | -1.69E-46 |
| MS.gene059283 | MS.gene37468 | 0.804607 | 1.99E-49 | -1.69E-46 |
| MS.gene059360 | MS.gene37468 | 0.812356 | 4.42E-51 | -1.69E-46 |
| MS.gene060084 | MS.gene37468 | 0.811731 | 6.05E-51 | -1.69E-46 |
| MS.gene06010 | MS.gene37468 | 0.835423 | 1.69E-56 | -1.69E-46 |
| MS.gene060259 | MS.gene37468 | 0.813425 | 2.58E-51 | -1.69E-46 |
| MS.gene060296 | MS.gene37468 | 0.827122 | 1.86E-54 | -1.69E-46 |
| MS.gene060400 | MS.gene37468 | 0.800561 | 1.36E-48 | -1.69E-46 |
| MS.gene060520 | MS.gene37468 | 0.810415 | 1.17E-50 | -1.69E-46 |
| MS.gene060563 | MS.gene37468 | 0.803203 | 3.90E-49 | -1.69E-46 |
| MS.gene060802 | MS.gene37468 | 0.844568 | 6.98E-59 | -1.69E-46 |
| MS.gene060850 | MS.gene37468 | 0.857783 | 1.29E-62 | -1.69E-46 |
| MS.gene060851 | MS.gene37468 | 0.859385 | 4.29E-63 | -1.69E-46 |
| MS.gene060852 | MS.gene37468 | 0.857399 | 1.68E-62 | -1.69E-46 |
| MS.gene060869 | MS.gene37468 | 0.835876 | 1.30E-56 | -1.69E-46 |
| MS.gene060870 | MS.gene37468 | 0.850858 | 1.29E-60 | -1.69E-46 |
| MS.gene060932 | MS.gene37468 | 0.832861 | 7.42E-56 | -1.69E-46 |
| MS.gene060998 | MS.gene37468 | 0.813823 | 2.11E-51 | -1.69E-46 |
| MS.gene06121 | MS.gene37468 | 0.828115 | 1.08E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37468.t1 | MTR_3g103320 | 97.229 | 397 | 11 | 0 | 1 | 397 | 1 | 397 | 0.0 | 789 |
| MS.gene37468.t1 | MTR_5g015150 | 43.735 | 423 | 202 | 7 | 1 | 397 | 1 | 413 | 3.40e-117 | 347 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37468.t1 | AT1G10150 | 52.041 | 392 | 177 | 4 | 7 | 390 | 13 | 401 | 4.48e-139 | 403 |
| MS.gene37468.t1 | AT1G59510 | 46.194 | 381 | 175 | 5 | 9 | 388 | 15 | 366 | 7.15e-118 | 348 |
| MS.gene37468.t1 | AT3G49790 | 41.892 | 370 | 174 | 6 | 5 | 373 | 12 | 341 | 4.08e-92 | 281 |
Find 79 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTTATATTTACATATTT+TGG | 0.007902 | 3.4:+90949191 | MS.gene37468:CDS |
| GTTGATGGAGTTGGGGATTC+TGG | 0.036210 | 3.4:+90948931 | MS.gene37468:CDS |
| TTCCTCGGACATGGCAATTT+TGG | 0.098120 | 3.4:-90948320 | None:intergenic |
| CGAAAAGGTGAAGGGAATTT+TGG | 0.152646 | 3.4:+90948756 | MS.gene37468:CDS |
| TCGAAATCTGATGGTATTTC+TGG | 0.188403 | 3.4:+90948577 | MS.gene37468:CDS |
| GGATAATTGTTTGAAACTAT+TGG | 0.205140 | 3.4:-90948299 | None:intergenic |
| TTGAGTTCACCTAGGGAAAA+TGG | 0.207384 | 3.4:+90948859 | MS.gene37468:CDS |
| CTCAAATCAGATTTACCTTT+TGG | 0.212767 | 3.4:-90948841 | None:intergenic |
| TTTGAAAAGGGGTGTTAATA+AGG | 0.254480 | 3.4:+90949086 | MS.gene37468:CDS |
| GAAAAGTGTGGGAAGGTTAT+AGG | 0.268010 | 3.4:+90948622 | MS.gene37468:CDS |
| GATAATTGTTTGAAACTATT+GGG | 0.292814 | 3.4:-90948298 | None:intergenic |
| AAAAGTGTGGGAAGGTTATA+GGG | 0.303415 | 3.4:+90948623 | MS.gene37468:CDS |
| TTGATGGAGTTGGGGATTCT+GGG | 0.306483 | 3.4:+90948932 | MS.gene37468:CDS |
| TGAAACGGTTTCTGCGGAAC+TGG | 0.346962 | 3.4:-90948224 | None:intergenic |
| GGCTGGAACTGGGTTTGTTT+CGG | 0.350057 | 3.4:+90948483 | MS.gene37468:CDS |
| GGATTCTGGGTGGCTTGAAC+AGG | 0.351079 | 3.4:+90948945 | MS.gene37468:CDS |
| CTTATGTCTGAGGCTGGAAC+TGG | 0.363984 | 3.4:+90948472 | MS.gene37468:CDS |
| AAGTTGGAAAATGTTGATTC+GGG | 0.380669 | 3.4:+90948553 | MS.gene37468:CDS |
| GAAGTTGGAAAATGTTGATT+CGG | 0.393462 | 3.4:+90948552 | MS.gene37468:CDS |
| GAGAAATTTGTTTAAATCGT+TGG | 0.399408 | 3.4:-90948254 | None:intergenic |
| CATTTGTGGAGTTTATGTTA+TGG | 0.403207 | 3.4:+90949049 | MS.gene37468:CDS |
| TTTGGTTAAAACATCTCATC+AGG | 0.407964 | 3.4:+90948807 | MS.gene37468:CDS |
| AGAATCCTAAAAGCGCGATT+AGG | 0.413573 | 3.4:-90948096 | None:intergenic |
| AATTTCTGAAGATAAGCTTC+CGG | 0.414427 | 3.4:-90948892 | None:intergenic |
| AGCTTTATAAGCACCGTAAC+CGG | 0.430646 | 3.4:-90948119 | None:intergenic |
| TATCTTCAGAAATTCAGAAA+TGG | 0.439497 | 3.4:+90948901 | MS.gene37468:CDS |
| CGAAACTGTGAGGTCATTTG+TGG | 0.447805 | 3.4:+90949035 | MS.gene37468:CDS |
| GAAGCTCTGTTGATGGAGTT+GGG | 0.450576 | 3.4:+90948923 | MS.gene37468:CDS |
| AATATCAGAAGGTTTGAAAA+GGG | 0.454639 | 3.4:+90949074 | MS.gene37468:CDS |
| ATGCAAGTTGTTAGATATGT+AGG | 0.456238 | 3.4:+90949135 | MS.gene37468:CDS |
| AACTGGGTTTGTTTCGGTTG+TGG | 0.457163 | 3.4:+90948489 | MS.gene37468:CDS |
| AGCACAAACCTCTGGTTAGC+TGG | 0.460341 | 3.4:-90948988 | None:intergenic |
| AACGAAAGCTTTGAGAAGCT+TGG | 0.461504 | 3.4:-90948182 | None:intergenic |
| AGGTTTGTGCTTGATGTCAC+GGG | 0.461808 | 3.4:+90949000 | MS.gene37468:CDS |
| GGAAAATGGGCGTTTGAAAC+CGG | 0.463327 | 3.4:+90948873 | MS.gene37468:CDS |
| AGAAATGGAAGCTCTGTTGA+TGG | 0.465656 | 3.4:+90948916 | MS.gene37468:CDS |
| TAATGGTGCTGTTGAGACTT+TGG | 0.466719 | 3.4:+90948789 | MS.gene37468:CDS |
| TGAGTTCACCTAGGGAAAAT+GGG | 0.476331 | 3.4:+90948860 | MS.gene37468:CDS |
| GAATATCAGAAGGTTTGAAA+AGG | 0.486731 | 3.4:+90949073 | MS.gene37468:CDS |
| GGAAGCTCTGTTGATGGAGT+TGG | 0.496439 | 3.4:+90948922 | MS.gene37468:CDS |
| GGTTTCAAAGTCTTTAACAC+AGG | 0.507988 | 3.4:+90948363 | MS.gene37468:CDS |
| ATCGTTGGAAACGATTGAAA+CGG | 0.512284 | 3.4:-90948239 | None:intergenic |
| AATTGTTATCGAAAATTCCT+CGG | 0.513477 | 3.4:-90948335 | None:intergenic |
| GAGGTTTGTGCTTGATGTCA+CGG | 0.533268 | 3.4:+90948999 | MS.gene37468:CDS |
| TATCGAAAATTCCTCGGACA+TGG | 0.538704 | 3.4:-90948329 | None:intergenic |
| GATAAGCTTATGTCTGAGGC+TGG | 0.543039 | 3.4:+90948466 | MS.gene37468:CDS |
| GAATCCAAAACACCACGAAA+AGG | 0.544499 | 3.4:+90948741 | MS.gene37468:CDS |
| AACGATTGAAACGGTTTCTG+CGG | 0.546930 | 3.4:-90948230 | None:intergenic |
| ATCTGATTTGAGTTCACCTA+GGG | 0.546953 | 3.4:+90948852 | MS.gene37468:CDS |
| CTTTGAGAAGCTTGGTGAAG+CGG | 0.547949 | 3.4:-90948174 | None:intergenic |
| GGGTGGTAGTAGGATTCTAG+TGG | 0.548130 | 3.4:+90949212 | MS.gene37468:CDS |
| TGACATCAAGCACAAACCTC+TGG | 0.548454 | 3.4:-90948996 | None:intergenic |
| AAAGTGTGGGAAGGTTATAG+GGG | 0.564724 | 3.4:+90948624 | MS.gene37468:CDS |
| ATGGAGTTGGGGATTCTGGG+TGG | 0.564951 | 3.4:+90948935 | MS.gene37468:CDS |
| GGGTTTGTTTCGGTTGTGGT+TGG | 0.582510 | 3.4:+90948493 | MS.gene37468:CDS |
| GTTTCAAAGTCTTTAACACA+GGG | 0.590487 | 3.4:+90948364 | MS.gene37468:CDS |
| GTTGGATAAGCTTATGTCTG+AGG | 0.594329 | 3.4:+90948462 | MS.gene37468:CDS |
| TTATGTCTGAGGCTGGAACT+GGG | 0.597190 | 3.4:+90948473 | MS.gene37468:CDS |
| TGAGAAGCTTGGTGAAGCGG+TGG | 0.598441 | 3.4:-90948171 | None:intergenic |
| GTGATTTGTGATGAAAAGTG+TGG | 0.602122 | 3.4:+90948610 | MS.gene37468:CDS |
| CATGATGACGTTGTAGACAA+AGG | 0.605113 | 3.4:+90949111 | MS.gene37468:CDS |
| GATTCGGGGTCGAAATCTGA+TGG | 0.609922 | 3.4:+90948568 | MS.gene37468:CDS |
| ATATCAGAAGGTTTGAAAAG+GGG | 0.613283 | 3.4:+90949075 | MS.gene37468:CDS |
| AAAACACCACGAAAAGGTGA+AGG | 0.616934 | 3.4:+90948747 | MS.gene37468:CDS |
| ATCCAAAATTGCCATGTCCG+AGG | 0.618224 | 3.4:+90948318 | MS.gene37468:CDS |
| ATGTTATGGAGAATATCAGA+AGG | 0.618821 | 3.4:+90949063 | MS.gene37468:CDS |
| AATCTGATTTGAGTTCACCT+AGG | 0.620883 | 3.4:+90948851 | MS.gene37468:CDS |
| AAAACCCTTGGAAATTGGTG+CGG | 0.627520 | 3.4:+90948414 | MS.gene37468:CDS |
| AAGCTCTGTTGATGGAGTTG+GGG | 0.629477 | 3.4:+90948924 | MS.gene37468:CDS |
| TTTCTGTGCCAGCTAACCAG+AGG | 0.634765 | 3.4:+90948980 | MS.gene37468:CDS |
| AAACACCACGAAAAGGTGAA+GGG | 0.640062 | 3.4:+90948748 | MS.gene37468:CDS |
| TTGTGATGAAAAGTGTGGGA+AGG | 0.642371 | 3.4:+90948615 | MS.gene37468:CDS |
| TGTTTACGTGAGAAATTGAG+TGG | 0.648714 | 3.4:-90948058 | None:intergenic |
| TGATTTGTGATGAAAAGTGT+GGG | 0.672796 | 3.4:+90948611 | MS.gene37468:CDS |
| AGTTGGAAAATGTTGATTCG+GGG | 0.681446 | 3.4:+90948554 | MS.gene37468:CDS |
| ATATGTAGGAGCTAAGTCGT+CGG | 0.689384 | 3.4:+90949149 | MS.gene37468:CDS |
| TAAATATAAAGCAAGACACA+AGG | 0.689722 | 3.4:-90949181 | None:intergenic |
| GGTTTGTGCTTGATGTCACG+GGG | 0.712732 | 3.4:+90949001 | MS.gene37468:CDS |
| GAGTGACATTCGAAACTGTG+AGG | 0.724455 | 3.4:+90949025 | MS.gene37468:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GCTTTATATTTACATATTTT+GGG | + | chr3.4:90949192-90949211 | MS.gene37468:CDS | 15.0% |
| !!! | TGCTTTATATTTACATATTT+TGG | + | chr3.4:90949191-90949210 | MS.gene37468:CDS | 15.0% |
| !!! | AATTTTCGATAACAATTTCT+AGG | + | chr3.4:90948341-90948360 | MS.gene37468:CDS | 20.0% |
| !!! | ATTTTCGATAACAATTTCTA+GGG | + | chr3.4:90948342-90948361 | MS.gene37468:CDS | 20.0% |
| !!! | GATAATTGTTTGAAACTATT+GGG | - | chr3.4:90948301-90948320 | None:intergenic | 20.0% |
| !!! | TGTTTTTCTTGATAAAACAA+TGG | + | chr3.4:90948681-90948700 | MS.gene37468:CDS | 20.0% |
| !!! | TTATATTTACATATTTTGGG+TGG | + | chr3.4:90949195-90949214 | MS.gene37468:CDS | 20.0% |
| ! | AATATCAGAAGGTTTGAAAA+GGG | + | chr3.4:90949074-90949093 | MS.gene37468:CDS | 25.0% |
| ! | AATTGTTATCGAAAATTCCT+CGG | - | chr3.4:90948338-90948357 | None:intergenic | 25.0% |
| ! | TAAATATAAAGCAAGACACA+AGG | - | chr3.4:90949184-90949203 | None:intergenic | 25.0% |
| ! | TATCTTCAGAAATTCAGAAA+TGG | + | chr3.4:90948901-90948920 | MS.gene37468:CDS | 25.0% |
| !! | GAGAAATTTGTTTAAATCGT+TGG | - | chr3.4:90948257-90948276 | None:intergenic | 25.0% |
| !! | GGATAATTGTTTGAAACTAT+TGG | - | chr3.4:90948302-90948321 | None:intergenic | 25.0% |
| !!! | AAAAATCGAATTTTTCGGAT+AGG | + | chr3.4:90948437-90948456 | MS.gene37468:CDS | 25.0% |
| !!! | AAAATCGAATTTTTCGGATA+GGG | + | chr3.4:90948438-90948457 | MS.gene37468:CDS | 25.0% |
| !!! | ATTTTGGTTTCTCTATGTAA+TGG | + | chr3.4:90948772-90948791 | MS.gene37468:CDS | 25.0% |
| ATATCAGAAGGTTTGAAAAG+GGG | + | chr3.4:90949075-90949094 | MS.gene37468:CDS | 30.0% | |
| ATGCAAGTTGTTAGATATGT+AGG | + | chr3.4:90949135-90949154 | MS.gene37468:CDS | 30.0% | |
| ATGTTATGGAGAATATCAGA+AGG | + | chr3.4:90949063-90949082 | MS.gene37468:CDS | 30.0% | |
| CATTTGTGGAGTTTATGTTA+TGG | + | chr3.4:90949049-90949068 | MS.gene37468:CDS | 30.0% | |
| GAATATCAGAAGGTTTGAAA+AGG | + | chr3.4:90949073-90949092 | MS.gene37468:CDS | 30.0% | |
| GTTTCAAAGTCTTTAACACA+GGG | + | chr3.4:90948364-90948383 | MS.gene37468:CDS | 30.0% | |
| TCCAGCAAAAATTTCATCAT+AGG | - | chr3.4:90948716-90948735 | None:intergenic | 30.0% | |
| TTTGAAAAACCCTTGGAAAT+TGG | + | chr3.4:90948409-90948428 | MS.gene37468:CDS | 30.0% | |
| TTTGGTTAAAACATCTCATC+AGG | + | chr3.4:90948807-90948826 | MS.gene37468:CDS | 30.0% | |
| ! | AATTTCTGAAGATAAGCTTC+CGG | - | chr3.4:90948895-90948914 | None:intergenic | 30.0% |
| ! | ACCTATGATGAAATTTTTGC+TGG | + | chr3.4:90948712-90948731 | MS.gene37468:CDS | 30.0% |
| ! | CTCAAATCAGATTTACCTTT+TGG | - | chr3.4:90948844-90948863 | None:intergenic | 30.0% |
| ! | GAAGTTGGAAAATGTTGATT+CGG | + | chr3.4:90948552-90948571 | MS.gene37468:CDS | 30.0% |
| ! | TGATTTGTGATGAAAAGTGT+GGG | + | chr3.4:90948611-90948630 | MS.gene37468:CDS | 30.0% |
| ! | TGCGGAAAAATCGAATTTTT+CGG | + | chr3.4:90948432-90948451 | MS.gene37468:CDS | 30.0% |
| ! | TTTAACACAGGGAATTTTGA+TGG | + | chr3.4:90948375-90948394 | MS.gene37468:CDS | 30.0% |
| !! | AAGTTGGAAAATGTTGATTC+GGG | + | chr3.4:90948553-90948572 | MS.gene37468:CDS | 30.0% |
| !! | TTAACACAGGGAATTTTGAT+GGG | + | chr3.4:90948376-90948395 | MS.gene37468:CDS | 30.0% |
| !! | TTTGAAAAGGGGTGTTAATA+AGG | + | chr3.4:90949086-90949105 | MS.gene37468:CDS | 30.0% |
| !! | TTTTGCTAGGAATTTGGTTT+TGG | + | chr3.4:90948519-90948538 | MS.gene37468:CDS | 30.0% |
| !!! | TTTGCTAGGAATTTGGTTTT+GGG | + | chr3.4:90948520-90948539 | MS.gene37468:CDS | 30.0% |
| ATCGTTGGAAACGATTGAAA+CGG | - | chr3.4:90948242-90948261 | None:intergenic | 35.0% | |
| GGTTTCAAAGTCTTTAACAC+AGG | + | chr3.4:90948363-90948382 | MS.gene37468:CDS | 35.0% | |
| TCGAAATCTGATGGTATTTC+TGG | + | chr3.4:90948577-90948596 | MS.gene37468:CDS | 35.0% | |
| TGGTGAATTTGAAAAACCCT+TGG | + | chr3.4:90948402-90948421 | MS.gene37468:CDS | 35.0% | |
| TGTTTACGTGAGAAATTGAG+TGG | - | chr3.4:90948061-90948080 | None:intergenic | 35.0% | |
| ! | AAAAGTGTGGGAAGGTTATA+GGG | + | chr3.4:90948623-90948642 | MS.gene37468:CDS | 35.0% |
| ! | AATCTGATTTGAGTTCACCT+AGG | + | chr3.4:90948851-90948870 | MS.gene37468:CDS | 35.0% |
| ! | ATCTGATTTGAGTTCACCTA+GGG | + | chr3.4:90948852-90948871 | MS.gene37468:CDS | 35.0% |
| ! | GTGATTTGTGATGAAAAGTG+TGG | + | chr3.4:90948610-90948629 | MS.gene37468:CDS | 35.0% |
| ! | TGGAAGTTTTGCTAGGAATT+TGG | + | chr3.4:90948513-90948532 | MS.gene37468:CDS | 35.0% |
| ! | TGGCGTTTTTGAACTACATA+GGG | - | chr3.4:90948154-90948173 | None:intergenic | 35.0% |
| !! | AGTTGGAAAATGTTGATTCG+GGG | + | chr3.4:90948554-90948573 | MS.gene37468:CDS | 35.0% |
| !! | CGATTAGGATAAGTCGTTTT+TGG | - | chr3.4:90948084-90948103 | None:intergenic | 35.0% |
| !! | TAACACAGGGAATTTTGATG+GGG | + | chr3.4:90948377-90948396 | MS.gene37468:CDS | 35.0% |
| !! | TACATATTTTGGGTGGTAGT+AGG | + | chr3.4:90949202-90949221 | MS.gene37468:CDS | 35.0% |
| !!! | CAGGTTTTGACTAATCCAAA+AGG | + | chr3.4:90948826-90948845 | MS.gene37468:CDS | 35.0% |
| AAAACACCACGAAAAGGTGA+AGG | + | chr3.4:90948747-90948766 | MS.gene37468:CDS | 40.0% | |
| AAAACCCTTGGAAATTGGTG+CGG | + | chr3.4:90948414-90948433 | MS.gene37468:CDS | 40.0% | |
| AAACACCACGAAAAGGTGAA+GGG | + | chr3.4:90948748-90948767 | MS.gene37468:CDS | 40.0% | |
| AAAGTGTGGGAAGGTTATAG+GGG | + | chr3.4:90948624-90948643 | MS.gene37468:CDS | 40.0% | |
| AACGATTGAAACGGTTTCTG+CGG | - | chr3.4:90948233-90948252 | None:intergenic | 40.0% | |
| AGAAATGGAAGCTCTGTTGA+TGG | + | chr3.4:90948916-90948935 | MS.gene37468:CDS | 40.0% | |
| ATATGTAGGAGCTAAGTCGT+CGG | + | chr3.4:90949149-90949168 | MS.gene37468:CDS | 40.0% | |
| GAATCCAAAACACCACGAAA+AGG | + | chr3.4:90948741-90948760 | MS.gene37468:CDS | 40.0% | |
| GTTGGATAAGCTTATGTCTG+AGG | + | chr3.4:90948462-90948481 | MS.gene37468:CDS | 40.0% | |
| TATCGAAAATTCCTCGGACA+TGG | - | chr3.4:90948332-90948351 | None:intergenic | 40.0% | |
| TGAGTTCACCTAGGGAAAAT+GGG | + | chr3.4:90948860-90948879 | MS.gene37468:CDS | 40.0% | |
| TTGAGTTCACCTAGGGAAAA+TGG | + | chr3.4:90948859-90948878 | MS.gene37468:CDS | 40.0% | |
| ! | AAATTCCCTTCACCTTTTCG+TGG | - | chr3.4:90948756-90948775 | None:intergenic | 40.0% |
| ! | AGAATCCTAAAAGCGCGATT+AGG | - | chr3.4:90948099-90948118 | None:intergenic | 40.0% |
| ! | AGCTTTATAAGCACCGTAAC+CGG | - | chr3.4:90948122-90948141 | None:intergenic | 40.0% |
| ! | CATGATGACGTTGTAGACAA+AGG | + | chr3.4:90949111-90949130 | MS.gene37468:CDS | 40.0% |
| ! | CGAAAAGGTGAAGGGAATTT+TGG | + | chr3.4:90948756-90948775 | MS.gene37468:CDS | 40.0% |
| ! | CTTATCCTAATCGCGCTTTT+AGG | + | chr3.4:90948091-90948110 | MS.gene37468:CDS | 40.0% |
| ! | GAAAAGTGTGGGAAGGTTAT+AGG | + | chr3.4:90948622-90948641 | MS.gene37468:CDS | 40.0% |
| ! | GTGGCGTTTTTGAACTACAT+AGG | - | chr3.4:90948155-90948174 | None:intergenic | 40.0% |
| ! | TTCACCTTTTCGTGGTGTTT+TGG | - | chr3.4:90948748-90948767 | None:intergenic | 40.0% |
| ! | TTGTGATGAAAAGTGTGGGA+AGG | + | chr3.4:90948615-90948634 | MS.gene37468:CDS | 40.0% |
| ! | TTGTGGTTGGAAGTTTTGCT+AGG | + | chr3.4:90948506-90948525 | MS.gene37468:CDS | 40.0% |
| ! | TTTTCCGCACCAATTTCCAA+GGG | - | chr3.4:90948421-90948440 | None:intergenic | 40.0% |
| ! | TTTTTCCGCACCAATTTCCA+AGG | - | chr3.4:90948422-90948441 | None:intergenic | 40.0% |
| !! | AACGAAAGCTTTGAGAAGCT+TGG | - | chr3.4:90948185-90948204 | None:intergenic | 40.0% |
| !! | GAATTTTTCGGATAGGGTGT+TGG | + | chr3.4:90948444-90948463 | MS.gene37468:CDS | 40.0% |
| !! | TAATGGTGCTGTTGAGACTT+TGG | + | chr3.4:90948789-90948808 | MS.gene37468:CDS | 40.0% |
| !! | TTTGGGTTTTCGTACGAAGT+TGG | + | chr3.4:90948537-90948556 | MS.gene37468:CDS | 40.0% |
| !!! | CTTTTAGGATTCTCCGGTTA+CGG | + | chr3.4:90948106-90948125 | MS.gene37468:CDS | 40.0% |
| AGGTTTGTGCTTGATGTCAC+GGG | + | chr3.4:90949000-90949019 | MS.gene37468:CDS | 45.0% | |
| ATCCAAAATTGCCATGTCCG+AGG | + | chr3.4:90948318-90948337 | MS.gene37468:CDS | 45.0% | |
| CGAAACTGTGAGGTCATTTG+TGG | + | chr3.4:90949035-90949054 | MS.gene37468:CDS | 45.0% | |
| GAGGTTTGTGCTTGATGTCA+CGG | + | chr3.4:90948999-90949018 | MS.gene37468:CDS | 45.0% | |
| GAGTGACATTCGAAACTGTG+AGG | + | chr3.4:90949025-90949044 | MS.gene37468:CDS | 45.0% | |
| TGACATCAAGCACAAACCTC+TGG | - | chr3.4:90948999-90949018 | None:intergenic | 45.0% | |
| TTGATGGAGTTGGGGATTCT+GGG | + | chr3.4:90948932-90948951 | MS.gene37468:CDS | 45.0% | |
| ! | AACTGGGTTTGTTTCGGTTG+TGG | + | chr3.4:90948489-90948508 | MS.gene37468:CDS | 45.0% |
| ! | AAGCTCTGTTGATGGAGTTG+GGG | + | chr3.4:90948924-90948943 | MS.gene37468:CDS | 45.0% |
| ! | CTTTGAGAAGCTTGGTGAAG+CGG | - | chr3.4:90948177-90948196 | None:intergenic | 45.0% |
| ! | GAAGCTCTGTTGATGGAGTT+GGG | + | chr3.4:90948923-90948942 | MS.gene37468:CDS | 45.0% |
| ! | GATAAGCTTATGTCTGAGGC+TGG | + | chr3.4:90948466-90948485 | MS.gene37468:CDS | 45.0% |
| ! | GGAAAATGGGCGTTTGAAAC+CGG | + | chr3.4:90948873-90948892 | MS.gene37468:CDS | 45.0% |
| ! | GGATTGTGTGCAGACTTTTG+TGG | + | chr3.4:90948645-90948664 | MS.gene37468:CDS | 45.0% |
| ! | TTATGTCTGAGGCTGGAACT+GGG | + | chr3.4:90948473-90948492 | MS.gene37468:CDS | 45.0% |
| ! | TTCAAACGCCCATTTTCCCT+AGG | - | chr3.4:90948871-90948890 | None:intergenic | 45.0% |
| ! | TTCCTCGGACATGGCAATTT+TGG | - | chr3.4:90948323-90948342 | None:intergenic | 45.0% |
| !! | CAGGGAATTTTGATGGGGTA+TGG | + | chr3.4:90948382-90948401 | MS.gene37468:CDS | 45.0% |
| !!! | ATCGCGCTTTTAGGATTCTC+CGG | + | chr3.4:90948100-90948119 | MS.gene37468:CDS | 45.0% |
| AGCACAAACCTCTGGTTAGC+TGG | - | chr3.4:90948991-90949010 | None:intergenic | 50.0% | |
| GATTCGGGGTCGAAATCTGA+TGG | + | chr3.4:90948568-90948587 | MS.gene37468:CDS | 50.0% | |
| GGGTGGTAGTAGGATTCTAG+TGG | + | chr3.4:90949212-90949231 | MS.gene37468:CDS | 50.0% | |
| GGTTTGTGCTTGATGTCACG+GGG | + | chr3.4:90949001-90949020 | MS.gene37468:CDS | 50.0% | |
| TGAAACGGTTTCTGCGGAAC+TGG | - | chr3.4:90948227-90948246 | None:intergenic | 50.0% | |
| TTTCTGTGCCAGCTAACCAG+AGG | + | chr3.4:90948980-90948999 | MS.gene37468:CDS | 50.0% | |
| ! | CTTATGTCTGAGGCTGGAAC+TGG | + | chr3.4:90948472-90948491 | MS.gene37468:CDS | 50.0% |
| ! | GGAAGCTCTGTTGATGGAGT+TGG | + | chr3.4:90948922-90948941 | MS.gene37468:CDS | 50.0% |
| ! | GGCTGGAACTGGGTTTGTTT+CGG | + | chr3.4:90948483-90948502 | MS.gene37468:CDS | 50.0% |
| ! | GGGTTTGTTTCGGTTGTGGT+TGG | + | chr3.4:90948493-90948512 | MS.gene37468:CDS | 50.0% |
| ! | GTTGATGGAGTTGGGGATTC+TGG | + | chr3.4:90948931-90948950 | MS.gene37468:CDS | 50.0% |
| ATGGAGTTGGGGATTCTGGG+TGG | + | chr3.4:90948935-90948954 | MS.gene37468:CDS | 55.0% | |
| GGATTCTGGGTGGCTTGAAC+AGG | + | chr3.4:90948945-90948964 | MS.gene37468:CDS | 55.0% | |
| ! | TGAGAAGCTTGGTGAAGCGG+TGG | - | chr3.4:90948174-90948193 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 90948049 | 90949242 | 90948049 | ID=MS.gene37468 |
| chr3.4 | mRNA | 90948049 | 90949242 | 90948049 | ID=MS.gene37468.t1;Parent=MS.gene37468 |
| chr3.4 | exon | 90948049 | 90949242 | 90948049 | ID=MS.gene37468.t1.exon1;Parent=MS.gene37468.t1 |
| chr3.4 | CDS | 90948049 | 90949242 | 90948049 | ID=cds.MS.gene37468.t1;Parent=MS.gene37468.t1 |
| Gene Sequence |
| Protein sequence |
