Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene40842.t1 | XP_003614188.1 | 99.7 | 362 | 1 | 0 | 1 | 362 | 1 | 362 | 7.50E-220 | 772.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene40842.t1 | O04300 | 95.5 | 359 | 15 | 1 | 1 | 358 | 1 | 359 | 8.4e-212 | 737.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene40842.t1 | G7JWW6 | 99.7 | 362 | 1 | 0 | 1 | 362 | 1 | 362 | 5.4e-220 | 772.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049171 | MS.gene40842 | -0.821277 | 4.40E-53 | -1.69E-46 |
MS.gene049222 | MS.gene40842 | -0.80541 | 1.35E-49 | -1.69E-46 |
MS.gene049285 | MS.gene40842 | -0.82005 | 8.42E-53 | -1.69E-46 |
MS.gene049320 | MS.gene40842 | -0.840531 | 8.22E-58 | -1.69E-46 |
MS.gene049633 | MS.gene40842 | -0.817747 | 2.81E-52 | -1.69E-46 |
MS.gene05010 | MS.gene40842 | -0.806156 | 9.43E-50 | -1.69E-46 |
MS.gene050163 | MS.gene40842 | -0.813916 | 2.01E-51 | -1.69E-46 |
MS.gene050165 | MS.gene40842 | -0.826962 | 2.03E-54 | -1.69E-46 |
MS.gene050323 | MS.gene40842 | -0.809575 | 1.77E-50 | -1.69E-46 |
MS.gene050333 | MS.gene40842 | -0.812569 | 3.97E-51 | -1.69E-46 |
MS.gene050496 | MS.gene40842 | -0.808581 | 2.89E-50 | -1.69E-46 |
MS.gene050504 | MS.gene40842 | -0.837867 | 4.03E-57 | -1.69E-46 |
MS.gene050577 | MS.gene40842 | -0.80788 | 4.07E-50 | -1.69E-46 |
MS.gene050612 | MS.gene40842 | -0.853739 | 1.96E-61 | -1.69E-46 |
MS.gene050675 | MS.gene40842 | -0.811329 | 7.39E-51 | -1.69E-46 |
MS.gene050699 | MS.gene40842 | -0.801006 | 1.10E-48 | -1.69E-46 |
MS.gene05080 | MS.gene40842 | -0.83072 | 2.50E-55 | -1.69E-46 |
MS.gene050868 | MS.gene40842 | -0.812424 | 4.27E-51 | -1.69E-46 |
MS.gene050871 | MS.gene40842 | -0.810487 | 1.12E-50 | -1.69E-46 |
MS.gene050986 | MS.gene40842 | -0.825216 | 5.29E-54 | -1.69E-46 |
MS.gene051044 | MS.gene40842 | 0.836214 | 1.07E-56 | -1.69E-46 |
MS.gene051127 | MS.gene40842 | 0.810651 | 1.04E-50 | -1.69E-46 |
MS.gene051138 | MS.gene40842 | 0.804279 | 2.33E-49 | -1.69E-46 |
MS.gene052164 | MS.gene40842 | -0.844661 | 6.58E-59 | -1.69E-46 |
MS.gene052482 | MS.gene40842 | -0.808797 | 2.60E-50 | -1.69E-46 |
MS.gene052486 | MS.gene40842 | -0.815078 | 1.11E-51 | -1.69E-46 |
MS.gene052916 | MS.gene40842 | -0.826721 | 2.32E-54 | -1.69E-46 |
MS.gene052966 | MS.gene40842 | -0.806405 | 8.36E-50 | -1.69E-46 |
MS.gene053574 | MS.gene40842 | -0.800197 | 1.61E-48 | -1.69E-46 |
MS.gene054056 | MS.gene40842 | 0.801533 | 8.61E-49 | -1.69E-46 |
MS.gene054642 | MS.gene40842 | -0.821434 | 4.05E-53 | -1.69E-46 |
MS.gene05470 | MS.gene40842 | -0.827831 | 1.26E-54 | -1.69E-46 |
MS.gene054954 | MS.gene40842 | -0.823245 | 1.54E-53 | -1.69E-46 |
MS.gene055362 | MS.gene40842 | -0.835936 | 1.26E-56 | -1.69E-46 |
MS.gene055502 | MS.gene40842 | -0.821118 | 4.78E-53 | -1.69E-46 |
MS.gene055577 | MS.gene40842 | -0.814648 | 1.38E-51 | -1.69E-46 |
MS.gene055748 | MS.gene40842 | -0.836562 | 8.70E-57 | -1.69E-46 |
MS.gene055750 | MS.gene40842 | -0.848506 | 5.87E-60 | -1.69E-46 |
MS.gene055751 | MS.gene40842 | -0.85264 | 4.04E-61 | -1.69E-46 |
MS.gene055776 | MS.gene40842 | -0.837662 | 4.55E-57 | -1.69E-46 |
MS.gene05589 | MS.gene40842 | -0.848452 | 6.07E-60 | -1.69E-46 |
MS.gene055942 | MS.gene40842 | 0.823985 | 1.03E-53 | -1.69E-46 |
MS.gene056504 | MS.gene40842 | -0.847079 | 1.45E-59 | -1.69E-46 |
MS.gene056510 | MS.gene40842 | -0.816628 | 5.01E-52 | -1.69E-46 |
MS.gene056657 | MS.gene40842 | -0.822954 | 1.80E-53 | -1.69E-46 |
MS.gene056692 | MS.gene40842 | -0.815974 | 7.02E-52 | -1.69E-46 |
MS.gene058419 | MS.gene40842 | -0.811294 | 7.52E-51 | -1.69E-46 |
MS.gene058629 | MS.gene40842 | 0.800927 | 1.15E-48 | -1.69E-46 |
MS.gene058773 | MS.gene40842 | -0.806351 | 8.58E-50 | -1.69E-46 |
MS.gene059022 | MS.gene40842 | -0.848753 | 5.01E-60 | -1.69E-46 |
MS.gene059677 | MS.gene40842 | -0.816529 | 5.28E-52 | -1.69E-46 |
MS.gene059718 | MS.gene40842 | -0.805525 | 1.28E-49 | -1.69E-46 |
MS.gene059865 | MS.gene40842 | -0.859875 | 3.06E-63 | -1.69E-46 |
MS.gene060076 | MS.gene40842 | 0.813893 | 2.03E-51 | -1.69E-46 |
MS.gene060703 | MS.gene40842 | -0.815112 | 1.09E-51 | -1.69E-46 |
MS.gene060762 | MS.gene40842 | -0.832366 | 9.85E-56 | -1.69E-46 |
MS.gene060778 | MS.gene40842 | -0.808578 | 2.89E-50 | -1.69E-46 |
MS.gene06077 | MS.gene40842 | -0.834315 | 3.22E-56 | -1.69E-46 |
MS.gene060982 | MS.gene40842 | -0.847276 | 1.28E-59 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene40842.t1 | MTR_5g046030 | 99.724 | 362 | 1 | 0 | 1 | 362 | 1 | 362 | 0.0 | 753 |
MS.gene40842.t1 | MTR_7g015970 | 90.323 | 341 | 33 | 0 | 5 | 345 | 2 | 342 | 0.0 | 655 |
MS.gene40842.t1 | MTR_2g461970 | 88.338 | 343 | 40 | 0 | 3 | 345 | 2 | 344 | 0.0 | 648 |
MS.gene40842.t1 | MTR_6g015905 | 87.246 | 345 | 41 | 1 | 1 | 345 | 1 | 342 | 0.0 | 640 |
MS.gene40842.t1 | MTR_7g079490 | 49.706 | 340 | 165 | 4 | 13 | 347 | 9 | 347 | 2.84e-128 | 372 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene40842.t1 | AT3G08900 | 88.473 | 347 | 40 | 0 | 1 | 347 | 4 | 350 | 0.0 | 660 |
MS.gene40842.t1 | AT5G15650 | 89.766 | 342 | 35 | 0 | 7 | 348 | 14 | 355 | 0.0 | 650 |
MS.gene40842.t1 | AT3G02230 | 90.801 | 337 | 31 | 0 | 9 | 345 | 16 | 352 | 0.0 | 649 |
MS.gene40842.t1 | AT5G50750 | 77.616 | 344 | 77 | 0 | 11 | 354 | 14 | 357 | 0.0 | 587 |
MS.gene40842.t1 | AT5G16510 | 50.292 | 342 | 164 | 3 | 12 | 348 | 8 | 348 | 1.90e-126 | 367 |
MS.gene40842.t1 | AT5G16510 | 50.292 | 342 | 164 | 3 | 12 | 348 | 8 | 348 | 1.90e-126 | 367 |
Find 101 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGCTTCTTGTATCTCCTTTA+AGG | 0.124351 | 5.1:+33805139 | MS.gene40842:CDS |
CTGCCGTTTCTCACGGTCTT+TGG | 0.210662 | 5.1:+33806262 | MS.gene40842:CDS |
TTGTCGTTGCTTTGGTTATA+TGG | 0.255025 | 5.1:+33805169 | MS.gene40842:CDS |
CTCATGGCCAGTTGGGTCTT+TGG | 0.258698 | 5.1:-33806100 | None:intergenic |
CCCATTTGTGAATCTGAAAA+AGG | 0.310657 | 5.1:+33807158 | MS.gene40842:CDS |
ATCTGTGACCATTTGGGACT+TGG | 0.319329 | 5.1:+33807090 | MS.gene40842:CDS |
ATCGGCTAGTTTGACGAAAT+AGG | 0.329742 | 5.1:-33807319 | None:intergenic |
AAGGAGATACAAGAAGCTTT+AGG | 0.331748 | 5.1:-33805134 | None:intergenic |
ACGACAAGCAGAATCCTTAA+AGG | 0.341341 | 5.1:-33805153 | None:intergenic |
ACAGGTTATCTGTGACCATT+TGG | 0.355312 | 5.1:+33807083 | MS.gene40842:intron |
GCTTTGCTGTGCCATATGTA+TGG | 0.361149 | 5.1:-33807129 | None:intergenic |
AGCTCATAATCGAAGCCTTC+AGG | 0.363037 | 5.1:-33805077 | None:intergenic |
CCCCATGTGCGGTATGAATC+TGG | 0.375879 | 5.1:+33806479 | MS.gene40842:CDS |
TAATGATATCAATAGGATCT+TGG | 0.382219 | 5.1:+33805109 | MS.gene40842:CDS |
ATGGGTGATGGTCAGCCTAT+TGG | 0.385375 | 5.1:+33806546 | MS.gene40842:CDS |
GATTCTGCTTGTCGTTGCTT+TGG | 0.394632 | 5.1:+33805161 | MS.gene40842:CDS |
AGGGTATCCACGGACGAAAT+CGG | 0.407391 | 5.1:-33806214 | None:intergenic |
TTTGAGAAGTGGAGTTGGTT+TGG | 0.417532 | 5.1:-33804928 | None:intergenic |
GGTCACTTGGATTGAAGCTT+GGG | 0.417754 | 5.1:+33807347 | MS.gene40842:CDS |
TCGGCTAGTTTGACGAAATA+GGG | 0.426172 | 5.1:-33807318 | None:intergenic |
CTATAACAAGTTGTTTCACT+TGG | 0.430220 | 5.1:-33807427 | None:intergenic |
TGCAATGTACTTCGGACTCA+TGG | 0.434284 | 5.1:+33806527 | MS.gene40842:CDS |
AAATCGGCACCGTCTCTGTA+TGG | 0.438086 | 5.1:-33806198 | None:intergenic |
AATGATATCAATAGGATCTT+GGG | 0.439584 | 5.1:+33805110 | MS.gene40842:CDS |
ACAATCGTAATGATATCAAT+AGG | 0.445544 | 5.1:+33805102 | MS.gene40842:CDS |
ATATCATCGTAACGTCCAAT+AGG | 0.448793 | 5.1:-33806561 | None:intergenic |
CAGGTTATCTGTGACCATTT+GGG | 0.455327 | 5.1:+33807084 | MS.gene40842:intron |
ACACCTAGTGTTCCTCTCAT+GGG | 0.456133 | 5.1:-33806328 | None:intergenic |
AATCGAGGTTGCGGATGGTT+GGG | 0.457285 | 5.1:-33804971 | None:intergenic |
CATTGATCTCATGGCCAGTT+GGG | 0.461837 | 5.1:-33806107 | None:intergenic |
TGTGTTGGAGCATCATAATC+AGG | 0.463164 | 5.1:-33806294 | None:intergenic |
TGCTGTTATGACCATTCCTA+AGG | 0.466819 | 5.1:+33806446 | MS.gene40842:CDS |
AGGAGTACAAAGGTATCTTC+TGG | 0.475804 | 5.1:+33807178 | MS.gene40842:CDS |
ATGAGTCCGAAGTACATTGC+AGG | 0.478365 | 5.1:-33806525 | None:intergenic |
GTCTCTGTATGGATCGTAAA+GGG | 0.478964 | 5.1:-33806187 | None:intergenic |
AAATCGAGGTTGCGGATGGT+TGG | 0.479416 | 5.1:-33804972 | None:intergenic |
CACACCTAGTGTTCCTCTCA+TGG | 0.479582 | 5.1:-33806329 | None:intergenic |
GTGGGCTGGCTGGTGCATAA+AGG | 0.491087 | 5.1:+33806584 | MS.gene40842:CDS |
TCAGACAAAGCTTCTGAGGC+TGG | 0.491454 | 5.1:+33807402 | MS.gene40842:CDS |
TGGTCACTTGGATTGAAGCT+TGG | 0.492678 | 5.1:+33807346 | MS.gene40842:CDS |
GTTCCCACTGCCGTTTCTCA+CGG | 0.495304 | 5.1:+33806255 | MS.gene40842:CDS |
GAGTTTCTCCTTGACCTGCT+TGG | 0.500552 | 5.1:-33807283 | None:intergenic |
TGGGGTTTGACAAGCTGTGT+TGG | 0.501069 | 5.1:-33806309 | None:intergenic |
TACAAAGCAATCATCATCAA+TGG | 0.504987 | 5.1:-33805216 | None:intergenic |
GCTCAAGTGCATTGATCTCA+TGG | 0.510252 | 5.1:-33806116 | None:intergenic |
TCGAGTTCATCTTTGAGAAG+TGG | 0.513462 | 5.1:-33804939 | None:intergenic |
CTTTGCTGTGCCATATGTAT+GGG | 0.513558 | 5.1:-33807128 | None:intergenic |
ATGGGGAACAGTGTTCCCTT+AGG | 0.514786 | 5.1:-33806462 | None:intergenic |
AGACCGGACTCCCATACATA+TGG | 0.522972 | 5.1:+33807118 | MS.gene40842:CDS |
CATCTCATCATTGTTCAAGA+TGG | 0.524066 | 5.1:+33805029 | MS.gene40842:CDS |
GGCCAGATTCATACCGCACA+TGG | 0.525210 | 5.1:-33806481 | None:intergenic |
TAGCCGATGCTATGGTCACT+TGG | 0.527668 | 5.1:+33807334 | MS.gene40842:CDS |
TAGGTTGCCAAAGACCCAAC+TGG | 0.528148 | 5.1:+33806093 | MS.gene40842:intron |
TCATCTTTGAGAAGTGGAGT+TGG | 0.528603 | 5.1:-33804933 | None:intergenic |
TTGGGACTTGGAGTGAAGAC+CGG | 0.528668 | 5.1:+33807102 | MS.gene40842:CDS |
CGTCTCTGTATGGATCGTAA+AGG | 0.534176 | 5.1:-33806188 | None:intergenic |
TTGGACGTTACGATGATATG+TGG | 0.534744 | 5.1:+33806565 | MS.gene40842:CDS |
GTGCCATATGTATGGGAGTC+CGG | 0.536306 | 5.1:-33807121 | None:intergenic |
GAGCCAAAGACCGTGAGAAA+CGG | 0.539391 | 5.1:-33806265 | None:intergenic |
CGTCAAACTAGCCGATGCTA+TGG | 0.543506 | 5.1:+33807326 | MS.gene40842:CDS |
TCTTCACTCCAAGTCCCAAA+TGG | 0.546381 | 5.1:-33807098 | None:intergenic |
TCCGATCAGCTCACGGTCGA+AGG | 0.546804 | 5.1:-33806502 | None:intergenic |
GCCTTCGACCGTGAGCTGAT+CGG | 0.550143 | 5.1:+33806501 | MS.gene40842:CDS |
GCATTGATCTCATGGCCAGT+TGG | 0.552346 | 5.1:-33806108 | None:intergenic |
ACCTCGATTTCCTCGAGATG+TGG | 0.554905 | 5.1:+33804985 | MS.gene40842:CDS |
AACTTCAGACAAAGCTTCTG+AGG | 0.554956 | 5.1:+33807398 | MS.gene40842:CDS |
ATCGGACCTGCAATGTACTT+CGG | 0.556292 | 5.1:+33806519 | MS.gene40842:CDS |
ACACCTTCACGAAGACTGAA+AGG | 0.560630 | 5.1:-33806234 | None:intergenic |
TATAACAAGTTGTTTCACTT+GGG | 0.561370 | 5.1:-33807426 | None:intergenic |
GCAATGTACTTCGGACTCAT+GGG | 0.570225 | 5.1:+33806528 | MS.gene40842:CDS |
ACGATGATATGTGGGCTGGC+TGG | 0.572483 | 5.1:+33806574 | MS.gene40842:CDS |
GACGGTGCCGATTTCGTCCG+TGG | 0.574199 | 5.1:+33806207 | MS.gene40842:CDS |
TCTCGAGGAAATCGAGGTTG+CGG | 0.577150 | 5.1:-33804980 | None:intergenic |
CACCTAGTGTTCCTCTCATG+GGG | 0.582074 | 5.1:-33806327 | None:intergenic |
GAGGAAATCGAGGTTGCGGA+TGG | 0.582735 | 5.1:-33804976 | None:intergenic |
AAGCAGGTCAAGGAGAAACT+CGG | 0.587789 | 5.1:+33807285 | MS.gene40842:CDS |
TGAACTCTCCAAGCAGGTCA+AGG | 0.588741 | 5.1:+33807275 | MS.gene40842:CDS |
CACCTTCACGAAGACTGAAA+GGG | 0.590828 | 5.1:-33806233 | None:intergenic |
AAAGTCATCAAAGTTCCTGA+AGG | 0.595656 | 5.1:+33805062 | MS.gene40842:CDS |
TACCCTTTCAGTCTTCGTGA+AGG | 0.598566 | 5.1:+33806231 | MS.gene40842:CDS |
GAACAGTGTTCCCTTAGGAA+TGG | 0.601526 | 5.1:-33806457 | None:intergenic |
CGTTACGATGATATGTGGGC+TGG | 0.604627 | 5.1:+33806570 | MS.gene40842:CDS |
CTACATTGAACTCTCCAAGC+AGG | 0.605977 | 5.1:+33807269 | MS.gene40842:CDS |
TACTTCGGACTCATGGGTGA+TGG | 0.607543 | 5.1:+33806534 | MS.gene40842:CDS |
GCCAGATTCATACCGCACAT+GGG | 0.610368 | 5.1:-33806480 | None:intergenic |
GCTGTTATGACCATTCCTAA+GGG | 0.618371 | 5.1:+33806447 | MS.gene40842:CDS |
AAAATGGAGTGGATGGACTG+AGG | 0.618470 | 5.1:-33806155 | None:intergenic |
AAAAGGGTCTCCACATCTCG+AGG | 0.620865 | 5.1:-33804995 | None:intergenic |
AATCCAAGTGACCATAGCAT+CGG | 0.629671 | 5.1:-33807337 | None:intergenic |
AGCTTGTCAAACCCCATGAG+AGG | 0.630478 | 5.1:+33806316 | MS.gene40842:CDS |
AAGACCGTGAGAAACGGCAG+TGG | 0.632878 | 5.1:-33806259 | None:intergenic |
GAAGACTGAAAGGGTATCCA+CGG | 0.633757 | 5.1:-33806224 | None:intergenic |
TCCACATCTCGAGGAAATCG+AGG | 0.634078 | 5.1:-33804986 | None:intergenic |
AATGTAGCATTTCTGAACAG+AGG | 0.647620 | 5.1:-33807253 | None:intergenic |
CCAGATTCATACCGCACATG+GGG | 0.650766 | 5.1:-33806479 | None:intergenic |
GGAACACTGTTCCCCATGTG+CGG | 0.651276 | 5.1:+33806468 | MS.gene40842:CDS |
TTGCAGGTCCGATCAGCTCA+CGG | 0.652893 | 5.1:-33806509 | None:intergenic |
TGGACGTTACGATGATATGT+GGG | 0.662582 | 5.1:+33806566 | MS.gene40842:CDS |
AGACCGTGAGAAACGGCAGT+GGG | 0.666732 | 5.1:-33806258 | None:intergenic |
AACCCCATGAGAGGAACACT+AGG | 0.672338 | 5.1:+33806325 | MS.gene40842:CDS |
CTTTACGATCCATACAGAGA+CGG | 0.691600 | 5.1:+33806189 | MS.gene40842:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAACAAAAATCAACAAAA+GGG | - | chr5.1:33805254-33805273 | None:intergenic | 15.0% |
!! | AATTAAATGTTAGTTCAAAA+TGG | - | chr5.1:33805938-33805957 | None:intergenic | 15.0% |
!! | ATTAAATGTTAGTTCAAAAT+GGG | - | chr5.1:33805937-33805956 | None:intergenic | 15.0% |
!!! | TTGCTTGAATTTTTTAAAAT+TGG | + | chr5.1:33805520-33805539 | MS.gene40842:intron | 15.0% |
!! | CAAAAACAAAAATCAACAAA+AGG | - | chr5.1:33805255-33805274 | None:intergenic | 20.0% |
!! | CATGTTTATTCTTAATTTCA+TGG | + | chr5.1:33806021-33806040 | MS.gene40842:intron | 20.0% |
!! | GAAAAAAAATGCATTATTCT+AGG | - | chr5.1:33806941-33806960 | None:intergenic | 20.0% |
!!! | ATTTGATTGTTTTGTTTCAT+GGG | + | chr5.1:33805303-33805322 | MS.gene40842:intron | 20.0% |
!!! | CTTTTGTTGATTTTTGTTTT+TGG | + | chr5.1:33805253-33805272 | MS.gene40842:intron | 20.0% |
!!! | TCTTTAATTTCAAATTCCTT+GGG | + | chr5.1:33806858-33806877 | MS.gene40842:intron | 20.0% |
!!! | TGTTTTATATTTCAATGTGT+AGG | + | chr5.1:33806074-33806093 | MS.gene40842:intron | 20.0% |
!!! | TTCTTTAATTTCAAATTCCT+TGG | + | chr5.1:33806857-33806876 | MS.gene40842:intron | 20.0% |
! | AAAAAATGCATTATTCTAGG+TGG | - | chr5.1:33806938-33806957 | None:intergenic | 25.0% |
! | AATGATATCAATAGGATCTT+GGG | + | chr5.1:33805110-33805129 | MS.gene40842:CDS | 25.0% |
! | ACAATCGTAATGATATCAAT+AGG | + | chr5.1:33805102-33805121 | MS.gene40842:CDS | 25.0% |
! | AGATGATATTGCTCAAAAAA+GGG | - | chr5.1:33805014-33805033 | None:intergenic | 25.0% |
! | TAATGATATCAATAGGATCT+TGG | + | chr5.1:33805109-33805128 | MS.gene40842:CDS | 25.0% |
! | TATATTTAAGGGTTGTTAAC+AGG | - | chr5.1:33806631-33806650 | None:intergenic | 25.0% |
! | TGTAATAGAAACAGCAATTT+GGG | - | chr5.1:33806660-33806679 | None:intergenic | 25.0% |
! | TTGGGAGACTATATATTTAA+GGG | - | chr5.1:33806642-33806661 | None:intergenic | 25.0% |
! | TTGTAATAGAAACAGCAATT+TGG | - | chr5.1:33806661-33806680 | None:intergenic | 25.0% |
! | TTTGGGAGACTATATATTTA+AGG | - | chr5.1:33806643-33806662 | None:intergenic | 25.0% |
!! | AAAACTTTTCCTTTTGCTTT+TGG | + | chr5.1:33805841-33805860 | MS.gene40842:intron | 25.0% |
!! | CAAATCTAATCAATTCCTTT+TGG | - | chr5.1:33805713-33805732 | None:intergenic | 25.0% |
!!! | AGCAAAAGGAAAAGTTTTAA+AGG | - | chr5.1:33805839-33805858 | None:intergenic | 25.0% |
!!! | AGTGATTTGCTTTTTTTTGA+GGG | + | chr5.1:33805360-33805379 | MS.gene40842:intron | 25.0% |
!!! | ATTTACAGATGCTTTTGTTT+AGG | + | chr5.1:33806381-33806400 | MS.gene40842:intron | 25.0% |
!!! | CTTGTTTTTCATTATCTTTC+TGG | + | chr5.1:33805765-33805784 | MS.gene40842:intron | 25.0% |
!!! | GATTTGATTGTTTTGTTTCA+TGG | + | chr5.1:33805302-33805321 | MS.gene40842:intron | 25.0% |
!!! | GTTGATTTTTGTTTTTGGAT+CGG | + | chr5.1:33805258-33805277 | MS.gene40842:intron | 25.0% |
!!! | TTATCTTTCTGGAATGATTT+AGG | + | chr5.1:33805776-33805795 | MS.gene40842:intron | 25.0% |
!!! | TTTACAGATGCTTTTGTTTA+GGG | + | chr5.1:33806382-33806401 | MS.gene40842:intron | 25.0% |
AATGCAACTAGATACTAGTT+AGG | - | chr5.1:33807009-33807028 | None:intergenic | 30.0% | |
ATCGACAATTCATTGATGAA+TGG | + | chr5.1:33807060-33807079 | MS.gene40842:intron | 30.0% | |
CTAATGATTTCAAACTTAGC+TGG | + | chr5.1:33805740-33805759 | MS.gene40842:intron | 30.0% | |
GAGATGATATTGCTCAAAAA+AGG | - | chr5.1:33805015-33805034 | None:intergenic | 30.0% | |
GTAAAGTAAAAAACCCAATG+CGG | - | chr5.1:33806818-33806837 | None:intergenic | 30.0% | |
TACAAAGCAATCATCATCAA+TGG | - | chr5.1:33805219-33805238 | None:intergenic | 30.0% | |
TTCACAGAAAAATAATCCCA+AGG | - | chr5.1:33806877-33806896 | None:intergenic | 30.0% | |
TTGAATTGAGTGTGTTTGTT+TGG | + | chr5.1:33805473-33805492 | MS.gene40842:intron | 30.0% | |
TTTGAATTTCAGCTAGATCT+GGG | + | chr5.1:33805395-33805414 | MS.gene40842:intron | 30.0% | |
! | AATCTGAAAAAGGAGTACAA+AGG | + | chr5.1:33807168-33807187 | MS.gene40842:CDS | 30.0% |
! | AGTCATTGAGTGTATTTTTC+AGG | + | chr5.1:33806415-33806434 | MS.gene40842:intron | 30.0% |
! | CATGAGAATTGATTTCCAAA+AGG | + | chr5.1:33805695-33805714 | MS.gene40842:intron | 30.0% |
! | TGTAATTAGCTTCTTCATTG+TGG | + | chr5.1:33806350-33806369 | MS.gene40842:intron | 30.0% |
! | TTTTGAATTTCAGCTAGATC+TGG | + | chr5.1:33805394-33805413 | MS.gene40842:intron | 30.0% |
!! | CTAGTTTTTGTAGCTTGATT+TGG | + | chr5.1:33805447-33805466 | MS.gene40842:intron | 30.0% |
!! | GAACTTTGATGACTTTTGAA+GGG | - | chr5.1:33805058-33805077 | None:intergenic | 30.0% |
!! | GATTTGTTATCTGTGTAAGT+TGG | + | chr5.1:33805967-33805986 | MS.gene40842:intron | 30.0% |
!! | TAAAGGGTGTTGAAGAAAAA+TGG | - | chr5.1:33806174-33806193 | None:intergenic | 30.0% |
!!! | CCTTTTTCAGATTCACAAAT+GGG | - | chr5.1:33807161-33807180 | None:intergenic | 30.0% |
!!! | CTTTTTTTTGAGGGGTTTTA+GGG | + | chr5.1:33805369-33805388 | MS.gene40842:intron | 30.0% |
!!! | GAGTGATTTGCTTTTTTTTG+AGG | + | chr5.1:33805359-33805378 | MS.gene40842:intron | 30.0% |
!!! | GTGATTTGCTTTTTTTTGAG+GGG | + | chr5.1:33805361-33805380 | MS.gene40842:intron | 30.0% |
!!! | TCCTTTTTCAGATTCACAAA+TGG | - | chr5.1:33807162-33807181 | None:intergenic | 30.0% |
!!! | TTTTTTTTGAGGGGTTTTAG+GGG | + | chr5.1:33805370-33805389 | MS.gene40842:intron | 30.0% |
AAAAAGCCTCCAAAAGCAAA+AGG | - | chr5.1:33805853-33805872 | None:intergenic | 35.0% | |
AAAGTCATCAAAGTTCCTGA+AGG | + | chr5.1:33805062-33805081 | MS.gene40842:CDS | 35.0% | |
AAGGAGATACAAGAAGCTTT+AGG | - | chr5.1:33805137-33805156 | None:intergenic | 35.0% | |
AATGAATTGTCGATCGTGTT+AGG | - | chr5.1:33807054-33807073 | None:intergenic | 35.0% | |
AATGTAGCATTTCTGAACAG+AGG | - | chr5.1:33807256-33807275 | None:intergenic | 35.0% | |
AGCTTCTTGTATCTCCTTTA+AGG | + | chr5.1:33805139-33805158 | MS.gene40842:CDS | 35.0% | |
ATATCATCGTAACGTCCAAT+AGG | - | chr5.1:33806564-33806583 | None:intergenic | 35.0% | |
ATGTTTGGAAGCAGTAAAGA+AGG | - | chr5.1:33806912-33806931 | None:intergenic | 35.0% | |
CAATTCATTGATGAATGGAC+AGG | + | chr5.1:33807065-33807084 | MS.gene40842:intron | 35.0% | |
CATCTCATCATTGTTCAAGA+TGG | + | chr5.1:33805029-33805048 | MS.gene40842:CDS | 35.0% | |
CCCATTTGTGAATCTGAAAA+AGG | + | chr5.1:33807158-33807177 | MS.gene40842:CDS | 35.0% | |
TACTCACGTGATTACTTAGT+TGG | + | chr5.1:33806682-33806701 | MS.gene40842:intron | 35.0% | |
TATTCTAGGTGGAAGATGTT+TGG | - | chr5.1:33806927-33806946 | None:intergenic | 35.0% | |
TCATATTCTCCATCTTGAAC+TGG | - | chr5.1:33805653-33805672 | None:intergenic | 35.0% | |
TGTTTGGAAGCAGTAAAGAA+GGG | - | chr5.1:33806911-33806930 | None:intergenic | 35.0% | |
TTGAAGAAAAATGGAGTGGA+TGG | - | chr5.1:33806165-33806184 | None:intergenic | 35.0% | |
! | ATAACGTGTTTTACCGCATT+GGG | + | chr5.1:33806802-33806821 | MS.gene40842:intron | 35.0% |
! | TGTGTTTGTTTGGAACTTCA+TGG | + | chr5.1:33805483-33805502 | MS.gene40842:intron | 35.0% |
! | TTGTCGTTGCTTTGGTTATA+TGG | + | chr5.1:33805169-33805188 | MS.gene40842:CDS | 35.0% |
!! | ACTTTTCCTTTTGCTTTTGG+AGG | + | chr5.1:33805844-33805863 | MS.gene40842:intron | 35.0% |
!! | AGAGGTGCAATCTTTTGAAA+GGG | - | chr5.1:33807238-33807257 | None:intergenic | 35.0% |
!! | GGAACTTTGATGACTTTTGA+AGG | - | chr5.1:33805059-33805078 | None:intergenic | 35.0% |
!!! | GCTTTTTTTTGAGGGGTTTT+AGG | + | chr5.1:33805368-33805387 | MS.gene40842:intron | 35.0% |
!!! | TGGAGAATGAGTTTTGACTT+TGG | + | chr5.1:33805540-33805559 | MS.gene40842:intron | 35.0% |
AACTTCAGACAAAGCTTCTG+AGG | + | chr5.1:33807398-33807417 | MS.gene40842:CDS | 40.0% | |
AATCCAAGTGACCATAGCAT+CGG | - | chr5.1:33807340-33807359 | None:intergenic | 40.0% | |
ACAGGTTATCTGTGACCATT+TGG | + | chr5.1:33807083-33807102 | MS.gene40842:intron | 40.0% | |
ACGACAAGCAGAATCCTTAA+AGG | - | chr5.1:33805156-33805175 | None:intergenic | 40.0% | |
ATTGTCGATCGTGTTAGGTT+TGG | - | chr5.1:33807049-33807068 | None:intergenic | 40.0% | |
CAGGTTATCTGTGACCATTT+GGG | + | chr5.1:33807084-33807103 | MS.gene40842:intron | 40.0% | |
CTTTACGATCCATACAGAGA+CGG | + | chr5.1:33806189-33806208 | MS.gene40842:CDS | 40.0% | |
GCAACTAGATACTAGTTAGG+TGG | - | chr5.1:33807006-33807025 | None:intergenic | 40.0% | |
GCTGTTATGACCATTCCTAA+GGG | + | chr5.1:33806447-33806466 | MS.gene40842:CDS | 40.0% | |
GTCTCTGTATGGATCGTAAA+GGG | - | chr5.1:33806190-33806209 | None:intergenic | 40.0% | |
TCCATCTTGAACTGGAATCA+AGG | - | chr5.1:33805645-33805664 | None:intergenic | 40.0% | |
TGCTGTTATGACCATTCCTA+AGG | + | chr5.1:33806446-33806465 | MS.gene40842:CDS | 40.0% | |
TGGACGTTACGATGATATGT+GGG | + | chr5.1:33806566-33806585 | MS.gene40842:CDS | 40.0% | |
TTGGACGTTACGATGATATG+TGG | + | chr5.1:33806565-33806584 | MS.gene40842:CDS | 40.0% | |
TTGTCGATCGTGTTAGGTTT+GGG | - | chr5.1:33807048-33807067 | None:intergenic | 40.0% | |
! | CATAACGTGTTTTACCGCAT+TGG | + | chr5.1:33806801-33806820 | MS.gene40842:intron | 40.0% |
! | CTTTGCTGTGCCATATGTAT+GGG | - | chr5.1:33807131-33807150 | None:intergenic | 40.0% |
! | GGTGTTGAAGAAAAATGGAG+TGG | - | chr5.1:33806169-33806188 | None:intergenic | 40.0% |
! | TCATCTTTGAGAAGTGGAGT+TGG | - | chr5.1:33804936-33804955 | None:intergenic | 40.0% |
! | TCGAGTTCATCTTTGAGAAG+TGG | - | chr5.1:33804942-33804961 | None:intergenic | 40.0% |
! | TGTGTTGGAGCATCATAATC+AGG | - | chr5.1:33806297-33806316 | None:intergenic | 40.0% |
! | TTGTTTGGAACTTCATGGCT+AGG | + | chr5.1:33805488-33805507 | MS.gene40842:intron | 40.0% |
! | TTTGAGAAGTGGAGTTGGTT+TGG | - | chr5.1:33804931-33804950 | None:intergenic | 40.0% |
!! | AGGAGTACAAAGGTATCTTC+TGG | + | chr5.1:33807178-33807197 | MS.gene40842:CDS | 40.0% |
!! | ATCGGCTAGTTTGACGAAAT+AGG | - | chr5.1:33807322-33807341 | None:intergenic | 40.0% |
!! | CAGAGGTGCAATCTTTTGAA+AGG | - | chr5.1:33807239-33807258 | None:intergenic | 40.0% |
!! | TCGGCTAGTTTGACGAAATA+GGG | - | chr5.1:33807321-33807340 | None:intergenic | 40.0% |
!! | TTGCTTTTGGAGGCTTTTTG+TGG | + | chr5.1:33805854-33805873 | MS.gene40842:intron | 40.0% |
AAGCAGGTCAAGGAGAAACT+CGG | + | chr5.1:33807285-33807304 | MS.gene40842:CDS | 45.0% | |
ACACCTAGTGTTCCTCTCAT+GGG | - | chr5.1:33806331-33806350 | None:intergenic | 45.0% | |
ACACCTTCACGAAGACTGAA+AGG | - | chr5.1:33806237-33806256 | None:intergenic | 45.0% | |
AGCTCATAATCGAAGCCTTC+AGG | - | chr5.1:33805080-33805099 | None:intergenic | 45.0% | |
AGGGTTGCAGCTTGGAAAAA+TGG | - | chr5.1:33807219-33807238 | None:intergenic | 45.0% | |
ATCGGACCTGCAATGTACTT+CGG | + | chr5.1:33806519-33806538 | MS.gene40842:CDS | 45.0% | |
ATGAGTCCGAAGTACATTGC+AGG | - | chr5.1:33806528-33806547 | None:intergenic | 45.0% | |
CACCTTCACGAAGACTGAAA+GGG | - | chr5.1:33806236-33806255 | None:intergenic | 45.0% | |
CATTGATCTCATGGCCAGTT+GGG | - | chr5.1:33806110-33806129 | None:intergenic | 45.0% | |
CGTCTCTGTATGGATCGTAA+AGG | - | chr5.1:33806191-33806210 | None:intergenic | 45.0% | |
CTACATTGAACTCTCCAAGC+AGG | + | chr5.1:33807269-33807288 | MS.gene40842:CDS | 45.0% | |
GAACAGTGTTCCCTTAGGAA+TGG | - | chr5.1:33806460-33806479 | None:intergenic | 45.0% | |
GATTCTGCTTGTCGTTGCTT+TGG | + | chr5.1:33805161-33805180 | MS.gene40842:CDS | 45.0% | |
GCAATGTACTTCGGACTCAT+GGG | + | chr5.1:33806528-33806547 | MS.gene40842:CDS | 45.0% | |
GCCTTGATTCCAGTTCAAGA+TGG | + | chr5.1:33805641-33805660 | MS.gene40842:intron | 45.0% | |
GGTCACTTGGATTGAAGCTT+GGG | + | chr5.1:33807347-33807366 | MS.gene40842:CDS | 45.0% | |
TACCCTTTCAGTCTTCGTGA+AGG | + | chr5.1:33806231-33806250 | MS.gene40842:CDS | 45.0% | |
TCTTCACTCCAAGTCCCAAA+TGG | - | chr5.1:33807101-33807120 | None:intergenic | 45.0% | |
TGCAATGTACTTCGGACTCA+TGG | + | chr5.1:33806527-33806546 | MS.gene40842:CDS | 45.0% | |
TGGTCACTTGGATTGAAGCT+TGG | + | chr5.1:33807346-33807365 | MS.gene40842:CDS | 45.0% | |
TGTCGATCGTGTTAGGTTTG+GGG | - | chr5.1:33807047-33807066 | None:intergenic | 45.0% | |
! | ATCTGTGACCATTTGGGACT+TGG | + | chr5.1:33807090-33807109 | MS.gene40842:CDS | 45.0% |
! | GCTCAAGTGCATTGATCTCA+TGG | - | chr5.1:33806119-33806138 | None:intergenic | 45.0% |
! | GCTTTGCTGTGCCATATGTA+TGG | - | chr5.1:33807132-33807151 | None:intergenic | 45.0% |
!! | AAAATGGAGTGGATGGACTG+AGG | - | chr5.1:33806158-33806177 | None:intergenic | 45.0% |
!! | CTTTTGAAAGGGTTGCAGCT+TGG | - | chr5.1:33807227-33807246 | None:intergenic | 45.0% |
!! | GAAGACTGAAAGGGTATCCA+CGG | - | chr5.1:33806227-33806246 | None:intergenic | 45.0% |
AAAAGGGTCTCCACATCTCG+AGG | - | chr5.1:33804998-33805017 | None:intergenic | 50.0% | |
AAATCGAGGTTGCGGATGGT+TGG | - | chr5.1:33804975-33804994 | None:intergenic | 50.0% | |
AAATCGGCACCGTCTCTGTA+TGG | - | chr5.1:33806201-33806220 | None:intergenic | 50.0% | |
AACCCCATGAGAGGAACACT+AGG | + | chr5.1:33806325-33806344 | MS.gene40842:CDS | 50.0% | |
AATCGAGGTTGCGGATGGTT+GGG | - | chr5.1:33804974-33804993 | None:intergenic | 50.0% | |
ACCTCGATTTCCTCGAGATG+TGG | + | chr5.1:33804985-33805004 | MS.gene40842:CDS | 50.0% | |
AGACCGGACTCCCATACATA+TGG | + | chr5.1:33807118-33807137 | MS.gene40842:CDS | 50.0% | |
AGCTTGTCAAACCCCATGAG+AGG | + | chr5.1:33806316-33806335 | MS.gene40842:CDS | 50.0% | |
ATGGGGAACAGTGTTCCCTT+AGG | - | chr5.1:33806465-33806484 | None:intergenic | 50.0% | |
CACACCTAGTGTTCCTCTCA+TGG | - | chr5.1:33806332-33806351 | None:intergenic | 50.0% | |
CACCTAGTGTTCCTCTCATG+GGG | - | chr5.1:33806330-33806349 | None:intergenic | 50.0% | |
CCAGATTCATACCGCACATG+GGG | - | chr5.1:33806482-33806501 | None:intergenic | 50.0% | |
CGTCAAACTAGCCGATGCTA+TGG | + | chr5.1:33807326-33807345 | MS.gene40842:CDS | 50.0% | |
CGTTACGATGATATGTGGGC+TGG | + | chr5.1:33806570-33806589 | MS.gene40842:CDS | 50.0% | |
GAGCCAAAGACCGTGAGAAA+CGG | - | chr5.1:33806268-33806287 | None:intergenic | 50.0% | |
GAGTTTCTCCTTGACCTGCT+TGG | - | chr5.1:33807286-33807305 | None:intergenic | 50.0% | |
GCCAGATTCATACCGCACAT+GGG | - | chr5.1:33806483-33806502 | None:intergenic | 50.0% | |
GTGCCATATGTATGGGAGTC+CGG | - | chr5.1:33807124-33807143 | None:intergenic | 50.0% | |
TACTTCGGACTCATGGGTGA+TGG | + | chr5.1:33806534-33806553 | MS.gene40842:CDS | 50.0% | |
TAGCCGATGCTATGGTCACT+TGG | + | chr5.1:33807334-33807353 | MS.gene40842:CDS | 50.0% | |
TAGGTTGCCAAAGACCCAAC+TGG | + | chr5.1:33806093-33806112 | MS.gene40842:intron | 50.0% | |
TCCACATCTCGAGGAAATCG+AGG | - | chr5.1:33804989-33805008 | None:intergenic | 50.0% | |
TCTCGAGGAAATCGAGGTTG+CGG | - | chr5.1:33804983-33805002 | None:intergenic | 50.0% | |
TGAACTCTCCAAGCAGGTCA+AGG | + | chr5.1:33807275-33807294 | MS.gene40842:CDS | 50.0% | |
TGGGGTTTGACAAGCTGTGT+TGG | - | chr5.1:33806312-33806331 | None:intergenic | 50.0% | |
TTGGGACTTGGAGTGAAGAC+CGG | + | chr5.1:33807102-33807121 | MS.gene40842:CDS | 50.0% | |
! | AGGGTATCCACGGACGAAAT+CGG | - | chr5.1:33806217-33806236 | None:intergenic | 50.0% |
! | ATGGGTGATGGTCAGCCTAT+TGG | + | chr5.1:33806546-33806565 | MS.gene40842:CDS | 50.0% |
! | GCATTGATCTCATGGCCAGT+TGG | - | chr5.1:33806111-33806130 | None:intergenic | 50.0% |
!! | TCAGACAAAGCTTCTGAGGC+TGG | + | chr5.1:33807402-33807421 | MS.gene40842:CDS | 50.0% |
AAGACCGTGAGAAACGGCAG+TGG | - | chr5.1:33806262-33806281 | None:intergenic | 55.0% | |
AGACCGTGAGAAACGGCAGT+GGG | - | chr5.1:33806261-33806280 | None:intergenic | 55.0% | |
CCCCATGTGCGGTATGAATC+TGG | + | chr5.1:33806479-33806498 | MS.gene40842:CDS | 55.0% | |
CTCATGGCCAGTTGGGTCTT+TGG | - | chr5.1:33806103-33806122 | None:intergenic | 55.0% | |
GAGGAAATCGAGGTTGCGGA+TGG | - | chr5.1:33804979-33804998 | None:intergenic | 55.0% | |
GGAACACTGTTCCCCATGTG+CGG | + | chr5.1:33806468-33806487 | MS.gene40842:CDS | 55.0% | |
GGCCAGATTCATACCGCACA+TGG | - | chr5.1:33806484-33806503 | None:intergenic | 55.0% | |
TTGCAGGTCCGATCAGCTCA+CGG | - | chr5.1:33806512-33806531 | None:intergenic | 55.0% | |
! | CTGCCGTTTCTCACGGTCTT+TGG | + | chr5.1:33806262-33806281 | MS.gene40842:CDS | 55.0% |
! | GTTCCCACTGCCGTTTCTCA+CGG | + | chr5.1:33806255-33806274 | MS.gene40842:CDS | 55.0% |
!! | ACGATGATATGTGGGCTGGC+TGG | + | chr5.1:33806574-33806593 | MS.gene40842:CDS | 55.0% |
GCCTTCGACCGTGAGCTGAT+CGG | + | chr5.1:33806501-33806520 | MS.gene40842:CDS | 60.0% | |
TCCGATCAGCTCACGGTCGA+AGG | - | chr5.1:33806505-33806524 | None:intergenic | 60.0% | |
!! | GTGGGCTGGCTGGTGCATAA+AGG | + | chr5.1:33806584-33806603 | MS.gene40842:CDS | 60.0% |
!! | GACGGTGCCGATTTCGTCCG+TGG | + | chr5.1:33806207-33806226 | MS.gene40842:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 33804915 | 33807434 | 33804915 | ID=MS.gene40842 |
chr5.1 | mRNA | 33804915 | 33807434 | 33804915 | ID=MS.gene40842.t1;Parent=MS.gene40842 |
chr5.1 | exon | 33804915 | 33805235 | 33804915 | ID=MS.gene40842.t1.exon1;Parent=MS.gene40842.t1 |
chr5.1 | CDS | 33804915 | 33805235 | 33804915 | ID=cds.MS.gene40842.t1;Parent=MS.gene40842.t1 |
chr5.1 | exon | 33806096 | 33806346 | 33806096 | ID=MS.gene40842.t1.exon2;Parent=MS.gene40842.t1 |
chr5.1 | CDS | 33806096 | 33806346 | 33806096 | ID=cds.MS.gene40842.t1;Parent=MS.gene40842.t1 |
chr5.1 | exon | 33806437 | 33806605 | 33806437 | ID=MS.gene40842.t1.exon3;Parent=MS.gene40842.t1 |
chr5.1 | CDS | 33806437 | 33806605 | 33806437 | ID=cds.MS.gene40842.t1;Parent=MS.gene40842.t1 |
chr5.1 | exon | 33807087 | 33807434 | 33807087 | ID=MS.gene40842.t1.exon4;Parent=MS.gene40842.t1 |
chr5.1 | CDS | 33807087 | 33807434 | 33807087 | ID=cds.MS.gene40842.t1;Parent=MS.gene40842.t1 |
Gene Sequence |
Protein sequence |