AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene40842


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene40842.t1 MTR_5g046030 99.724 362 1 0 1 362 1 362 0.0 753
MS.gene40842.t1 MTR_7g015970 90.323 341 33 0 5 345 2 342 0.0 655
MS.gene40842.t1 MTR_2g461970 88.338 343 40 0 3 345 2 344 0.0 648
MS.gene40842.t1 MTR_6g015905 87.246 345 41 1 1 345 1 342 0.0 640
MS.gene40842.t1 MTR_7g079490 49.706 340 165 4 13 347 9 347 2.84e-128 372
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene40842.t1 AT3G08900 88.473 347 40 0 1 347 4 350 0.0 660
MS.gene40842.t1 AT5G15650 89.766 342 35 0 7 348 14 355 0.0 650
MS.gene40842.t1 AT3G02230 90.801 337 31 0 9 345 16 352 0.0 649
MS.gene40842.t1 AT5G50750 77.616 344 77 0 11 354 14 357 0.0 587
MS.gene40842.t1 AT5G16510 50.292 342 164 3 12 348 8 348 1.90e-126 367
MS.gene40842.t1 AT5G16510 50.292 342 164 3 12 348 8 348 1.90e-126 367

Find 101 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTTCTTGTATCTCCTTTA+AGG 0.124351 5.1:+33805139 MS.gene40842:CDS
CTGCCGTTTCTCACGGTCTT+TGG 0.210662 5.1:+33806262 MS.gene40842:CDS
TTGTCGTTGCTTTGGTTATA+TGG 0.255025 5.1:+33805169 MS.gene40842:CDS
CTCATGGCCAGTTGGGTCTT+TGG 0.258698 5.1:-33806100 None:intergenic
CCCATTTGTGAATCTGAAAA+AGG 0.310657 5.1:+33807158 MS.gene40842:CDS
ATCTGTGACCATTTGGGACT+TGG 0.319329 5.1:+33807090 MS.gene40842:CDS
ATCGGCTAGTTTGACGAAAT+AGG 0.329742 5.1:-33807319 None:intergenic
AAGGAGATACAAGAAGCTTT+AGG 0.331748 5.1:-33805134 None:intergenic
ACGACAAGCAGAATCCTTAA+AGG 0.341341 5.1:-33805153 None:intergenic
ACAGGTTATCTGTGACCATT+TGG 0.355312 5.1:+33807083 MS.gene40842:intron
GCTTTGCTGTGCCATATGTA+TGG 0.361149 5.1:-33807129 None:intergenic
AGCTCATAATCGAAGCCTTC+AGG 0.363037 5.1:-33805077 None:intergenic
CCCCATGTGCGGTATGAATC+TGG 0.375879 5.1:+33806479 MS.gene40842:CDS
TAATGATATCAATAGGATCT+TGG 0.382219 5.1:+33805109 MS.gene40842:CDS
ATGGGTGATGGTCAGCCTAT+TGG 0.385375 5.1:+33806546 MS.gene40842:CDS
GATTCTGCTTGTCGTTGCTT+TGG 0.394632 5.1:+33805161 MS.gene40842:CDS
AGGGTATCCACGGACGAAAT+CGG 0.407391 5.1:-33806214 None:intergenic
TTTGAGAAGTGGAGTTGGTT+TGG 0.417532 5.1:-33804928 None:intergenic
GGTCACTTGGATTGAAGCTT+GGG 0.417754 5.1:+33807347 MS.gene40842:CDS
TCGGCTAGTTTGACGAAATA+GGG 0.426172 5.1:-33807318 None:intergenic
CTATAACAAGTTGTTTCACT+TGG 0.430220 5.1:-33807427 None:intergenic
TGCAATGTACTTCGGACTCA+TGG 0.434284 5.1:+33806527 MS.gene40842:CDS
AAATCGGCACCGTCTCTGTA+TGG 0.438086 5.1:-33806198 None:intergenic
AATGATATCAATAGGATCTT+GGG 0.439584 5.1:+33805110 MS.gene40842:CDS
ACAATCGTAATGATATCAAT+AGG 0.445544 5.1:+33805102 MS.gene40842:CDS
ATATCATCGTAACGTCCAAT+AGG 0.448793 5.1:-33806561 None:intergenic
CAGGTTATCTGTGACCATTT+GGG 0.455327 5.1:+33807084 MS.gene40842:intron
ACACCTAGTGTTCCTCTCAT+GGG 0.456133 5.1:-33806328 None:intergenic
AATCGAGGTTGCGGATGGTT+GGG 0.457285 5.1:-33804971 None:intergenic
CATTGATCTCATGGCCAGTT+GGG 0.461837 5.1:-33806107 None:intergenic
TGTGTTGGAGCATCATAATC+AGG 0.463164 5.1:-33806294 None:intergenic
TGCTGTTATGACCATTCCTA+AGG 0.466819 5.1:+33806446 MS.gene40842:CDS
AGGAGTACAAAGGTATCTTC+TGG 0.475804 5.1:+33807178 MS.gene40842:CDS
ATGAGTCCGAAGTACATTGC+AGG 0.478365 5.1:-33806525 None:intergenic
GTCTCTGTATGGATCGTAAA+GGG 0.478964 5.1:-33806187 None:intergenic
AAATCGAGGTTGCGGATGGT+TGG 0.479416 5.1:-33804972 None:intergenic
CACACCTAGTGTTCCTCTCA+TGG 0.479582 5.1:-33806329 None:intergenic
GTGGGCTGGCTGGTGCATAA+AGG 0.491087 5.1:+33806584 MS.gene40842:CDS
TCAGACAAAGCTTCTGAGGC+TGG 0.491454 5.1:+33807402 MS.gene40842:CDS
TGGTCACTTGGATTGAAGCT+TGG 0.492678 5.1:+33807346 MS.gene40842:CDS
GTTCCCACTGCCGTTTCTCA+CGG 0.495304 5.1:+33806255 MS.gene40842:CDS
GAGTTTCTCCTTGACCTGCT+TGG 0.500552 5.1:-33807283 None:intergenic
TGGGGTTTGACAAGCTGTGT+TGG 0.501069 5.1:-33806309 None:intergenic
TACAAAGCAATCATCATCAA+TGG 0.504987 5.1:-33805216 None:intergenic
GCTCAAGTGCATTGATCTCA+TGG 0.510252 5.1:-33806116 None:intergenic
TCGAGTTCATCTTTGAGAAG+TGG 0.513462 5.1:-33804939 None:intergenic
CTTTGCTGTGCCATATGTAT+GGG 0.513558 5.1:-33807128 None:intergenic
ATGGGGAACAGTGTTCCCTT+AGG 0.514786 5.1:-33806462 None:intergenic
AGACCGGACTCCCATACATA+TGG 0.522972 5.1:+33807118 MS.gene40842:CDS
CATCTCATCATTGTTCAAGA+TGG 0.524066 5.1:+33805029 MS.gene40842:CDS
GGCCAGATTCATACCGCACA+TGG 0.525210 5.1:-33806481 None:intergenic
TAGCCGATGCTATGGTCACT+TGG 0.527668 5.1:+33807334 MS.gene40842:CDS
TAGGTTGCCAAAGACCCAAC+TGG 0.528148 5.1:+33806093 MS.gene40842:intron
TCATCTTTGAGAAGTGGAGT+TGG 0.528603 5.1:-33804933 None:intergenic
TTGGGACTTGGAGTGAAGAC+CGG 0.528668 5.1:+33807102 MS.gene40842:CDS
CGTCTCTGTATGGATCGTAA+AGG 0.534176 5.1:-33806188 None:intergenic
TTGGACGTTACGATGATATG+TGG 0.534744 5.1:+33806565 MS.gene40842:CDS
GTGCCATATGTATGGGAGTC+CGG 0.536306 5.1:-33807121 None:intergenic
GAGCCAAAGACCGTGAGAAA+CGG 0.539391 5.1:-33806265 None:intergenic
CGTCAAACTAGCCGATGCTA+TGG 0.543506 5.1:+33807326 MS.gene40842:CDS
TCTTCACTCCAAGTCCCAAA+TGG 0.546381 5.1:-33807098 None:intergenic
TCCGATCAGCTCACGGTCGA+AGG 0.546804 5.1:-33806502 None:intergenic
GCCTTCGACCGTGAGCTGAT+CGG 0.550143 5.1:+33806501 MS.gene40842:CDS
GCATTGATCTCATGGCCAGT+TGG 0.552346 5.1:-33806108 None:intergenic
ACCTCGATTTCCTCGAGATG+TGG 0.554905 5.1:+33804985 MS.gene40842:CDS
AACTTCAGACAAAGCTTCTG+AGG 0.554956 5.1:+33807398 MS.gene40842:CDS
ATCGGACCTGCAATGTACTT+CGG 0.556292 5.1:+33806519 MS.gene40842:CDS
ACACCTTCACGAAGACTGAA+AGG 0.560630 5.1:-33806234 None:intergenic
TATAACAAGTTGTTTCACTT+GGG 0.561370 5.1:-33807426 None:intergenic
GCAATGTACTTCGGACTCAT+GGG 0.570225 5.1:+33806528 MS.gene40842:CDS
ACGATGATATGTGGGCTGGC+TGG 0.572483 5.1:+33806574 MS.gene40842:CDS
GACGGTGCCGATTTCGTCCG+TGG 0.574199 5.1:+33806207 MS.gene40842:CDS
TCTCGAGGAAATCGAGGTTG+CGG 0.577150 5.1:-33804980 None:intergenic
CACCTAGTGTTCCTCTCATG+GGG 0.582074 5.1:-33806327 None:intergenic
GAGGAAATCGAGGTTGCGGA+TGG 0.582735 5.1:-33804976 None:intergenic
AAGCAGGTCAAGGAGAAACT+CGG 0.587789 5.1:+33807285 MS.gene40842:CDS
TGAACTCTCCAAGCAGGTCA+AGG 0.588741 5.1:+33807275 MS.gene40842:CDS
CACCTTCACGAAGACTGAAA+GGG 0.590828 5.1:-33806233 None:intergenic
AAAGTCATCAAAGTTCCTGA+AGG 0.595656 5.1:+33805062 MS.gene40842:CDS
TACCCTTTCAGTCTTCGTGA+AGG 0.598566 5.1:+33806231 MS.gene40842:CDS
GAACAGTGTTCCCTTAGGAA+TGG 0.601526 5.1:-33806457 None:intergenic
CGTTACGATGATATGTGGGC+TGG 0.604627 5.1:+33806570 MS.gene40842:CDS
CTACATTGAACTCTCCAAGC+AGG 0.605977 5.1:+33807269 MS.gene40842:CDS
TACTTCGGACTCATGGGTGA+TGG 0.607543 5.1:+33806534 MS.gene40842:CDS
GCCAGATTCATACCGCACAT+GGG 0.610368 5.1:-33806480 None:intergenic
GCTGTTATGACCATTCCTAA+GGG 0.618371 5.1:+33806447 MS.gene40842:CDS
AAAATGGAGTGGATGGACTG+AGG 0.618470 5.1:-33806155 None:intergenic
AAAAGGGTCTCCACATCTCG+AGG 0.620865 5.1:-33804995 None:intergenic
AATCCAAGTGACCATAGCAT+CGG 0.629671 5.1:-33807337 None:intergenic
AGCTTGTCAAACCCCATGAG+AGG 0.630478 5.1:+33806316 MS.gene40842:CDS
AAGACCGTGAGAAACGGCAG+TGG 0.632878 5.1:-33806259 None:intergenic
GAAGACTGAAAGGGTATCCA+CGG 0.633757 5.1:-33806224 None:intergenic
TCCACATCTCGAGGAAATCG+AGG 0.634078 5.1:-33804986 None:intergenic
AATGTAGCATTTCTGAACAG+AGG 0.647620 5.1:-33807253 None:intergenic
CCAGATTCATACCGCACATG+GGG 0.650766 5.1:-33806479 None:intergenic
GGAACACTGTTCCCCATGTG+CGG 0.651276 5.1:+33806468 MS.gene40842:CDS
TTGCAGGTCCGATCAGCTCA+CGG 0.652893 5.1:-33806509 None:intergenic
TGGACGTTACGATGATATGT+GGG 0.662582 5.1:+33806566 MS.gene40842:CDS
AGACCGTGAGAAACGGCAGT+GGG 0.666732 5.1:-33806258 None:intergenic
AACCCCATGAGAGGAACACT+AGG 0.672338 5.1:+33806325 MS.gene40842:CDS
CTTTACGATCCATACAGAGA+CGG 0.691600 5.1:+33806189 MS.gene40842:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAACAAAAATCAACAAAA+GGG - chr5.1:33805254-33805273 None:intergenic 15.0%
!! AATTAAATGTTAGTTCAAAA+TGG - chr5.1:33805938-33805957 None:intergenic 15.0%
!! ATTAAATGTTAGTTCAAAAT+GGG - chr5.1:33805937-33805956 None:intergenic 15.0%
!!! TTGCTTGAATTTTTTAAAAT+TGG + chr5.1:33805520-33805539 MS.gene40842:intron 15.0%
!! CAAAAACAAAAATCAACAAA+AGG - chr5.1:33805255-33805274 None:intergenic 20.0%
!! CATGTTTATTCTTAATTTCA+TGG + chr5.1:33806021-33806040 MS.gene40842:intron 20.0%
!! GAAAAAAAATGCATTATTCT+AGG - chr5.1:33806941-33806960 None:intergenic 20.0%
!!! ATTTGATTGTTTTGTTTCAT+GGG + chr5.1:33805303-33805322 MS.gene40842:intron 20.0%
!!! CTTTTGTTGATTTTTGTTTT+TGG + chr5.1:33805253-33805272 MS.gene40842:intron 20.0%
!!! TCTTTAATTTCAAATTCCTT+GGG + chr5.1:33806858-33806877 MS.gene40842:intron 20.0%
!!! TGTTTTATATTTCAATGTGT+AGG + chr5.1:33806074-33806093 MS.gene40842:intron 20.0%
!!! TTCTTTAATTTCAAATTCCT+TGG + chr5.1:33806857-33806876 MS.gene40842:intron 20.0%
! AAAAAATGCATTATTCTAGG+TGG - chr5.1:33806938-33806957 None:intergenic 25.0%
! AATGATATCAATAGGATCTT+GGG + chr5.1:33805110-33805129 MS.gene40842:CDS 25.0%
! ACAATCGTAATGATATCAAT+AGG + chr5.1:33805102-33805121 MS.gene40842:CDS 25.0%
! AGATGATATTGCTCAAAAAA+GGG - chr5.1:33805014-33805033 None:intergenic 25.0%
! TAATGATATCAATAGGATCT+TGG + chr5.1:33805109-33805128 MS.gene40842:CDS 25.0%
! TATATTTAAGGGTTGTTAAC+AGG - chr5.1:33806631-33806650 None:intergenic 25.0%
! TGTAATAGAAACAGCAATTT+GGG - chr5.1:33806660-33806679 None:intergenic 25.0%
! TTGGGAGACTATATATTTAA+GGG - chr5.1:33806642-33806661 None:intergenic 25.0%
! TTGTAATAGAAACAGCAATT+TGG - chr5.1:33806661-33806680 None:intergenic 25.0%
! TTTGGGAGACTATATATTTA+AGG - chr5.1:33806643-33806662 None:intergenic 25.0%
!! AAAACTTTTCCTTTTGCTTT+TGG + chr5.1:33805841-33805860 MS.gene40842:intron 25.0%
!! CAAATCTAATCAATTCCTTT+TGG - chr5.1:33805713-33805732 None:intergenic 25.0%
!!! AGCAAAAGGAAAAGTTTTAA+AGG - chr5.1:33805839-33805858 None:intergenic 25.0%
!!! AGTGATTTGCTTTTTTTTGA+GGG + chr5.1:33805360-33805379 MS.gene40842:intron 25.0%
!!! ATTTACAGATGCTTTTGTTT+AGG + chr5.1:33806381-33806400 MS.gene40842:intron 25.0%
!!! CTTGTTTTTCATTATCTTTC+TGG + chr5.1:33805765-33805784 MS.gene40842:intron 25.0%
!!! GATTTGATTGTTTTGTTTCA+TGG + chr5.1:33805302-33805321 MS.gene40842:intron 25.0%
!!! GTTGATTTTTGTTTTTGGAT+CGG + chr5.1:33805258-33805277 MS.gene40842:intron 25.0%
!!! TTATCTTTCTGGAATGATTT+AGG + chr5.1:33805776-33805795 MS.gene40842:intron 25.0%
!!! TTTACAGATGCTTTTGTTTA+GGG + chr5.1:33806382-33806401 MS.gene40842:intron 25.0%
AATGCAACTAGATACTAGTT+AGG - chr5.1:33807009-33807028 None:intergenic 30.0%
ATCGACAATTCATTGATGAA+TGG + chr5.1:33807060-33807079 MS.gene40842:intron 30.0%
CTAATGATTTCAAACTTAGC+TGG + chr5.1:33805740-33805759 MS.gene40842:intron 30.0%
GAGATGATATTGCTCAAAAA+AGG - chr5.1:33805015-33805034 None:intergenic 30.0%
GTAAAGTAAAAAACCCAATG+CGG - chr5.1:33806818-33806837 None:intergenic 30.0%
TACAAAGCAATCATCATCAA+TGG - chr5.1:33805219-33805238 None:intergenic 30.0%
TTCACAGAAAAATAATCCCA+AGG - chr5.1:33806877-33806896 None:intergenic 30.0%
TTGAATTGAGTGTGTTTGTT+TGG + chr5.1:33805473-33805492 MS.gene40842:intron 30.0%
TTTGAATTTCAGCTAGATCT+GGG + chr5.1:33805395-33805414 MS.gene40842:intron 30.0%
! AATCTGAAAAAGGAGTACAA+AGG + chr5.1:33807168-33807187 MS.gene40842:CDS 30.0%
! AGTCATTGAGTGTATTTTTC+AGG + chr5.1:33806415-33806434 MS.gene40842:intron 30.0%
! CATGAGAATTGATTTCCAAA+AGG + chr5.1:33805695-33805714 MS.gene40842:intron 30.0%
! TGTAATTAGCTTCTTCATTG+TGG + chr5.1:33806350-33806369 MS.gene40842:intron 30.0%
! TTTTGAATTTCAGCTAGATC+TGG + chr5.1:33805394-33805413 MS.gene40842:intron 30.0%
!! CTAGTTTTTGTAGCTTGATT+TGG + chr5.1:33805447-33805466 MS.gene40842:intron 30.0%
!! GAACTTTGATGACTTTTGAA+GGG - chr5.1:33805058-33805077 None:intergenic 30.0%
!! GATTTGTTATCTGTGTAAGT+TGG + chr5.1:33805967-33805986 MS.gene40842:intron 30.0%
!! TAAAGGGTGTTGAAGAAAAA+TGG - chr5.1:33806174-33806193 None:intergenic 30.0%
!!! CCTTTTTCAGATTCACAAAT+GGG - chr5.1:33807161-33807180 None:intergenic 30.0%
!!! CTTTTTTTTGAGGGGTTTTA+GGG + chr5.1:33805369-33805388 MS.gene40842:intron 30.0%
!!! GAGTGATTTGCTTTTTTTTG+AGG + chr5.1:33805359-33805378 MS.gene40842:intron 30.0%
!!! GTGATTTGCTTTTTTTTGAG+GGG + chr5.1:33805361-33805380 MS.gene40842:intron 30.0%
!!! TCCTTTTTCAGATTCACAAA+TGG - chr5.1:33807162-33807181 None:intergenic 30.0%
!!! TTTTTTTTGAGGGGTTTTAG+GGG + chr5.1:33805370-33805389 MS.gene40842:intron 30.0%
AAAAAGCCTCCAAAAGCAAA+AGG - chr5.1:33805853-33805872 None:intergenic 35.0%
AAAGTCATCAAAGTTCCTGA+AGG + chr5.1:33805062-33805081 MS.gene40842:CDS 35.0%
AAGGAGATACAAGAAGCTTT+AGG - chr5.1:33805137-33805156 None:intergenic 35.0%
AATGAATTGTCGATCGTGTT+AGG - chr5.1:33807054-33807073 None:intergenic 35.0%
AATGTAGCATTTCTGAACAG+AGG - chr5.1:33807256-33807275 None:intergenic 35.0%
AGCTTCTTGTATCTCCTTTA+AGG + chr5.1:33805139-33805158 MS.gene40842:CDS 35.0%
ATATCATCGTAACGTCCAAT+AGG - chr5.1:33806564-33806583 None:intergenic 35.0%
ATGTTTGGAAGCAGTAAAGA+AGG - chr5.1:33806912-33806931 None:intergenic 35.0%
CAATTCATTGATGAATGGAC+AGG + chr5.1:33807065-33807084 MS.gene40842:intron 35.0%
CATCTCATCATTGTTCAAGA+TGG + chr5.1:33805029-33805048 MS.gene40842:CDS 35.0%
CCCATTTGTGAATCTGAAAA+AGG + chr5.1:33807158-33807177 MS.gene40842:CDS 35.0%
TACTCACGTGATTACTTAGT+TGG + chr5.1:33806682-33806701 MS.gene40842:intron 35.0%
TATTCTAGGTGGAAGATGTT+TGG - chr5.1:33806927-33806946 None:intergenic 35.0%
TCATATTCTCCATCTTGAAC+TGG - chr5.1:33805653-33805672 None:intergenic 35.0%
TGTTTGGAAGCAGTAAAGAA+GGG - chr5.1:33806911-33806930 None:intergenic 35.0%
TTGAAGAAAAATGGAGTGGA+TGG - chr5.1:33806165-33806184 None:intergenic 35.0%
! ATAACGTGTTTTACCGCATT+GGG + chr5.1:33806802-33806821 MS.gene40842:intron 35.0%
! TGTGTTTGTTTGGAACTTCA+TGG + chr5.1:33805483-33805502 MS.gene40842:intron 35.0%
! TTGTCGTTGCTTTGGTTATA+TGG + chr5.1:33805169-33805188 MS.gene40842:CDS 35.0%
!! ACTTTTCCTTTTGCTTTTGG+AGG + chr5.1:33805844-33805863 MS.gene40842:intron 35.0%
!! AGAGGTGCAATCTTTTGAAA+GGG - chr5.1:33807238-33807257 None:intergenic 35.0%
!! GGAACTTTGATGACTTTTGA+AGG - chr5.1:33805059-33805078 None:intergenic 35.0%
!!! GCTTTTTTTTGAGGGGTTTT+AGG + chr5.1:33805368-33805387 MS.gene40842:intron 35.0%
!!! TGGAGAATGAGTTTTGACTT+TGG + chr5.1:33805540-33805559 MS.gene40842:intron 35.0%
AACTTCAGACAAAGCTTCTG+AGG + chr5.1:33807398-33807417 MS.gene40842:CDS 40.0%
AATCCAAGTGACCATAGCAT+CGG - chr5.1:33807340-33807359 None:intergenic 40.0%
ACAGGTTATCTGTGACCATT+TGG + chr5.1:33807083-33807102 MS.gene40842:intron 40.0%
ACGACAAGCAGAATCCTTAA+AGG - chr5.1:33805156-33805175 None:intergenic 40.0%
ATTGTCGATCGTGTTAGGTT+TGG - chr5.1:33807049-33807068 None:intergenic 40.0%
CAGGTTATCTGTGACCATTT+GGG + chr5.1:33807084-33807103 MS.gene40842:intron 40.0%
CTTTACGATCCATACAGAGA+CGG + chr5.1:33806189-33806208 MS.gene40842:CDS 40.0%
GCAACTAGATACTAGTTAGG+TGG - chr5.1:33807006-33807025 None:intergenic 40.0%
GCTGTTATGACCATTCCTAA+GGG + chr5.1:33806447-33806466 MS.gene40842:CDS 40.0%
GTCTCTGTATGGATCGTAAA+GGG - chr5.1:33806190-33806209 None:intergenic 40.0%
TCCATCTTGAACTGGAATCA+AGG - chr5.1:33805645-33805664 None:intergenic 40.0%
TGCTGTTATGACCATTCCTA+AGG + chr5.1:33806446-33806465 MS.gene40842:CDS 40.0%
TGGACGTTACGATGATATGT+GGG + chr5.1:33806566-33806585 MS.gene40842:CDS 40.0%
TTGGACGTTACGATGATATG+TGG + chr5.1:33806565-33806584 MS.gene40842:CDS 40.0%
TTGTCGATCGTGTTAGGTTT+GGG - chr5.1:33807048-33807067 None:intergenic 40.0%
! CATAACGTGTTTTACCGCAT+TGG + chr5.1:33806801-33806820 MS.gene40842:intron 40.0%
! CTTTGCTGTGCCATATGTAT+GGG - chr5.1:33807131-33807150 None:intergenic 40.0%
! GGTGTTGAAGAAAAATGGAG+TGG - chr5.1:33806169-33806188 None:intergenic 40.0%
! TCATCTTTGAGAAGTGGAGT+TGG - chr5.1:33804936-33804955 None:intergenic 40.0%
! TCGAGTTCATCTTTGAGAAG+TGG - chr5.1:33804942-33804961 None:intergenic 40.0%
! TGTGTTGGAGCATCATAATC+AGG - chr5.1:33806297-33806316 None:intergenic 40.0%
! TTGTTTGGAACTTCATGGCT+AGG + chr5.1:33805488-33805507 MS.gene40842:intron 40.0%
! TTTGAGAAGTGGAGTTGGTT+TGG - chr5.1:33804931-33804950 None:intergenic 40.0%
!! AGGAGTACAAAGGTATCTTC+TGG + chr5.1:33807178-33807197 MS.gene40842:CDS 40.0%
!! ATCGGCTAGTTTGACGAAAT+AGG - chr5.1:33807322-33807341 None:intergenic 40.0%
!! CAGAGGTGCAATCTTTTGAA+AGG - chr5.1:33807239-33807258 None:intergenic 40.0%
!! TCGGCTAGTTTGACGAAATA+GGG - chr5.1:33807321-33807340 None:intergenic 40.0%
!! TTGCTTTTGGAGGCTTTTTG+TGG + chr5.1:33805854-33805873 MS.gene40842:intron 40.0%
AAGCAGGTCAAGGAGAAACT+CGG + chr5.1:33807285-33807304 MS.gene40842:CDS 45.0%
ACACCTAGTGTTCCTCTCAT+GGG - chr5.1:33806331-33806350 None:intergenic 45.0%
ACACCTTCACGAAGACTGAA+AGG - chr5.1:33806237-33806256 None:intergenic 45.0%
AGCTCATAATCGAAGCCTTC+AGG - chr5.1:33805080-33805099 None:intergenic 45.0%
AGGGTTGCAGCTTGGAAAAA+TGG - chr5.1:33807219-33807238 None:intergenic 45.0%
ATCGGACCTGCAATGTACTT+CGG + chr5.1:33806519-33806538 MS.gene40842:CDS 45.0%
ATGAGTCCGAAGTACATTGC+AGG - chr5.1:33806528-33806547 None:intergenic 45.0%
CACCTTCACGAAGACTGAAA+GGG - chr5.1:33806236-33806255 None:intergenic 45.0%
CATTGATCTCATGGCCAGTT+GGG - chr5.1:33806110-33806129 None:intergenic 45.0%
CGTCTCTGTATGGATCGTAA+AGG - chr5.1:33806191-33806210 None:intergenic 45.0%
CTACATTGAACTCTCCAAGC+AGG + chr5.1:33807269-33807288 MS.gene40842:CDS 45.0%
GAACAGTGTTCCCTTAGGAA+TGG - chr5.1:33806460-33806479 None:intergenic 45.0%
GATTCTGCTTGTCGTTGCTT+TGG + chr5.1:33805161-33805180 MS.gene40842:CDS 45.0%
GCAATGTACTTCGGACTCAT+GGG + chr5.1:33806528-33806547 MS.gene40842:CDS 45.0%
GCCTTGATTCCAGTTCAAGA+TGG + chr5.1:33805641-33805660 MS.gene40842:intron 45.0%
GGTCACTTGGATTGAAGCTT+GGG + chr5.1:33807347-33807366 MS.gene40842:CDS 45.0%
TACCCTTTCAGTCTTCGTGA+AGG + chr5.1:33806231-33806250 MS.gene40842:CDS 45.0%
TCTTCACTCCAAGTCCCAAA+TGG - chr5.1:33807101-33807120 None:intergenic 45.0%
TGCAATGTACTTCGGACTCA+TGG + chr5.1:33806527-33806546 MS.gene40842:CDS 45.0%
TGGTCACTTGGATTGAAGCT+TGG + chr5.1:33807346-33807365 MS.gene40842:CDS 45.0%
TGTCGATCGTGTTAGGTTTG+GGG - chr5.1:33807047-33807066 None:intergenic 45.0%
! ATCTGTGACCATTTGGGACT+TGG + chr5.1:33807090-33807109 MS.gene40842:CDS 45.0%
! GCTCAAGTGCATTGATCTCA+TGG - chr5.1:33806119-33806138 None:intergenic 45.0%
! GCTTTGCTGTGCCATATGTA+TGG - chr5.1:33807132-33807151 None:intergenic 45.0%
!! AAAATGGAGTGGATGGACTG+AGG - chr5.1:33806158-33806177 None:intergenic 45.0%
!! CTTTTGAAAGGGTTGCAGCT+TGG - chr5.1:33807227-33807246 None:intergenic 45.0%
!! GAAGACTGAAAGGGTATCCA+CGG - chr5.1:33806227-33806246 None:intergenic 45.0%
AAAAGGGTCTCCACATCTCG+AGG - chr5.1:33804998-33805017 None:intergenic 50.0%
AAATCGAGGTTGCGGATGGT+TGG - chr5.1:33804975-33804994 None:intergenic 50.0%
AAATCGGCACCGTCTCTGTA+TGG - chr5.1:33806201-33806220 None:intergenic 50.0%
AACCCCATGAGAGGAACACT+AGG + chr5.1:33806325-33806344 MS.gene40842:CDS 50.0%
AATCGAGGTTGCGGATGGTT+GGG - chr5.1:33804974-33804993 None:intergenic 50.0%
ACCTCGATTTCCTCGAGATG+TGG + chr5.1:33804985-33805004 MS.gene40842:CDS 50.0%
AGACCGGACTCCCATACATA+TGG + chr5.1:33807118-33807137 MS.gene40842:CDS 50.0%
AGCTTGTCAAACCCCATGAG+AGG + chr5.1:33806316-33806335 MS.gene40842:CDS 50.0%
ATGGGGAACAGTGTTCCCTT+AGG - chr5.1:33806465-33806484 None:intergenic 50.0%
CACACCTAGTGTTCCTCTCA+TGG - chr5.1:33806332-33806351 None:intergenic 50.0%
CACCTAGTGTTCCTCTCATG+GGG - chr5.1:33806330-33806349 None:intergenic 50.0%
CCAGATTCATACCGCACATG+GGG - chr5.1:33806482-33806501 None:intergenic 50.0%
CGTCAAACTAGCCGATGCTA+TGG + chr5.1:33807326-33807345 MS.gene40842:CDS 50.0%
CGTTACGATGATATGTGGGC+TGG + chr5.1:33806570-33806589 MS.gene40842:CDS 50.0%
GAGCCAAAGACCGTGAGAAA+CGG - chr5.1:33806268-33806287 None:intergenic 50.0%
GAGTTTCTCCTTGACCTGCT+TGG - chr5.1:33807286-33807305 None:intergenic 50.0%
GCCAGATTCATACCGCACAT+GGG - chr5.1:33806483-33806502 None:intergenic 50.0%
GTGCCATATGTATGGGAGTC+CGG - chr5.1:33807124-33807143 None:intergenic 50.0%
TACTTCGGACTCATGGGTGA+TGG + chr5.1:33806534-33806553 MS.gene40842:CDS 50.0%
TAGCCGATGCTATGGTCACT+TGG + chr5.1:33807334-33807353 MS.gene40842:CDS 50.0%
TAGGTTGCCAAAGACCCAAC+TGG + chr5.1:33806093-33806112 MS.gene40842:intron 50.0%
TCCACATCTCGAGGAAATCG+AGG - chr5.1:33804989-33805008 None:intergenic 50.0%
TCTCGAGGAAATCGAGGTTG+CGG - chr5.1:33804983-33805002 None:intergenic 50.0%
TGAACTCTCCAAGCAGGTCA+AGG + chr5.1:33807275-33807294 MS.gene40842:CDS 50.0%
TGGGGTTTGACAAGCTGTGT+TGG - chr5.1:33806312-33806331 None:intergenic 50.0%
TTGGGACTTGGAGTGAAGAC+CGG + chr5.1:33807102-33807121 MS.gene40842:CDS 50.0%
! AGGGTATCCACGGACGAAAT+CGG - chr5.1:33806217-33806236 None:intergenic 50.0%
! ATGGGTGATGGTCAGCCTAT+TGG + chr5.1:33806546-33806565 MS.gene40842:CDS 50.0%
! GCATTGATCTCATGGCCAGT+TGG - chr5.1:33806111-33806130 None:intergenic 50.0%
!! TCAGACAAAGCTTCTGAGGC+TGG + chr5.1:33807402-33807421 MS.gene40842:CDS 50.0%
AAGACCGTGAGAAACGGCAG+TGG - chr5.1:33806262-33806281 None:intergenic 55.0%
AGACCGTGAGAAACGGCAGT+GGG - chr5.1:33806261-33806280 None:intergenic 55.0%
CCCCATGTGCGGTATGAATC+TGG + chr5.1:33806479-33806498 MS.gene40842:CDS 55.0%
CTCATGGCCAGTTGGGTCTT+TGG - chr5.1:33806103-33806122 None:intergenic 55.0%
GAGGAAATCGAGGTTGCGGA+TGG - chr5.1:33804979-33804998 None:intergenic 55.0%
GGAACACTGTTCCCCATGTG+CGG + chr5.1:33806468-33806487 MS.gene40842:CDS 55.0%
GGCCAGATTCATACCGCACA+TGG - chr5.1:33806484-33806503 None:intergenic 55.0%
TTGCAGGTCCGATCAGCTCA+CGG - chr5.1:33806512-33806531 None:intergenic 55.0%
! CTGCCGTTTCTCACGGTCTT+TGG + chr5.1:33806262-33806281 MS.gene40842:CDS 55.0%
! GTTCCCACTGCCGTTTCTCA+CGG + chr5.1:33806255-33806274 MS.gene40842:CDS 55.0%
!! ACGATGATATGTGGGCTGGC+TGG + chr5.1:33806574-33806593 MS.gene40842:CDS 55.0%
GCCTTCGACCGTGAGCTGAT+CGG + chr5.1:33806501-33806520 MS.gene40842:CDS 60.0%
TCCGATCAGCTCACGGTCGA+AGG - chr5.1:33806505-33806524 None:intergenic 60.0%
!! GTGGGCTGGCTGGTGCATAA+AGG + chr5.1:33806584-33806603 MS.gene40842:CDS 60.0%
!! GACGGTGCCGATTTCGTCCG+TGG + chr5.1:33806207-33806226 MS.gene40842:CDS 65.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 33804915 33807434 33804915 ID=MS.gene40842
chr5.1 mRNA 33804915 33807434 33804915 ID=MS.gene40842.t1;Parent=MS.gene40842
chr5.1 exon 33804915 33805235 33804915 ID=MS.gene40842.t1.exon1;Parent=MS.gene40842.t1
chr5.1 CDS 33804915 33805235 33804915 ID=cds.MS.gene40842.t1;Parent=MS.gene40842.t1
chr5.1 exon 33806096 33806346 33806096 ID=MS.gene40842.t1.exon2;Parent=MS.gene40842.t1
chr5.1 CDS 33806096 33806346 33806096 ID=cds.MS.gene40842.t1;Parent=MS.gene40842.t1
chr5.1 exon 33806437 33806605 33806437 ID=MS.gene40842.t1.exon3;Parent=MS.gene40842.t1
chr5.1 CDS 33806437 33806605 33806437 ID=cds.MS.gene40842.t1;Parent=MS.gene40842.t1
chr5.1 exon 33807087 33807434 33807087 ID=MS.gene40842.t1.exon4;Parent=MS.gene40842.t1
chr5.1 CDS 33807087 33807434 33807087 ID=cds.MS.gene40842.t1;Parent=MS.gene40842.t1
Gene Sequence

>MS.gene40842

ATGGCTTCTTCATCCAAACCAACTCCACTTCTCAAAGATGAACTCGACATCGTGATCCCAACCATCCGCAACCTCGATTTCCTCGAGATGTGGAGACCCTTTTTTGAGCAATATCATCTCATCATTGTTCAAGATGGTGACCCTTCAAAAGTCATCAAAGTTCCTGAAGGCTTCGATTATGAGCTTTACAATCGTAATGATATCAATAGGATCTTGGGTCCTAAAGCTTCTTGTATCTCCTTTAAGGATTCTGCTTGTCGTTGCTTTGGTTATATGGTTTCTAAGAAGAAGTATATTTATACCATTGATGATGATTGCTTTGTAAGTTTTTTAATACCCTTTTGTTGATTTTTGTTTTTGGATCGGAAAGTTTTTAGCTTTGACTTTGATTTGATTGTTTTGTTTCATGGGTTGTTGTGATTTGAAATTGAATTGACTTGATTTGAGTGATTTGCTTTTTTTTGAGGGGTTTTAGGGGTTTTTGAATTTCAGCTAGATCTGGGTTTTTGATAAGAAGATCGTTGAATTTGAGCTAGTTTTTGTAGCTTGATTTGGTTTTTGAATTGAGTGTGTTTGTTTGGAACTTCATGGCTAGGTTTTATTTTTTGCTTGAATTTTTTAAAATTGGAGAATGAGTTTTGACTTTGGAAATTGTTGAACATTTTGAAATACACTATAATTTTGTTCGATTTGATTCGATTTTAGTTTTGATTGTTCGAATCAAATGCCTTGATTCCAGTTCAAGATGGAGAATATGATTTTTTATACGTAGTTTTCAAACATGAGAATTGATTTCCAAAAGGAATTGATTAGATTTGATACATTCTAATGATTTCAAACTTAGCTGGATCTTGTTTTTCATTATCTTTCTGGAATGATTTAGGCAAATAATGTGAACATACATTGTAGACAGAATGATTTCCTTTAAAACTTTTCCTTTTGCTTTTGGAGGCTTTTTGTGGACAGAGTGATTTCGAATCAAATCGAAAGTGAAATTTCTCGTCTTATTGTTTGAATTTCCCATTTTGAACTAACATTTAATTGTTGAGTCTGATTTGTTATCTGTGTAAGTTGGTTCTTCGATATCTGATGCTAATAAGTAATAACATGTTTATTCTTAATTTCATGGAATGTACTGTGTTTCATATGAAAAGATTTATGTTTTATATTTCAATGTGTAGGTTGCCAAAGACCCAACTGGCCATGAGATCAATGCACTTGAGCAGCACATTAAGAATCTCCTCAGTCCATCCACTCCATTTTTCTTCAACACCCTTTACGATCCATACAGAGACGGTGCCGATTTCGTCCGTGGATACCCTTTCAGTCTTCGTGAAGGTGTTCCCACTGCCGTTTCTCACGGTCTTTGGCTCAACATACCTGATTATGATGCTCCAACACAGCTTGTCAAACCCCATGAGAGGAACACTAGGTGTGTAATTAGCTTCTTCATTGTGGTTAATTCGATTTACAGATGCTTTTGTTTAGGGACATTTGCTTAGTCATTGAGTGTATTTTTCAGGTTTGTTGATGCTGTTATGACCATTCCTAAGGGAACACTGTTCCCCATGTGCGGTATGAATCTGGCCTTCGACCGTGAGCTGATCGGACCTGCAATGTACTTCGGACTCATGGGTGATGGTCAGCCTATTGGACGTTACGATGATATGTGGGCTGGCTGGTGCATAAAGGTATATAAATCATGTCTCTTTTCCTGTTAACAACCCTTAAATATATAGTCTCCCAAATTGCTGTTTCTATTACAATTACTCACGTGATTACTTAGTTGGCTTTTGCGTTATCTTTTGTATTCAGTTTTAGTTTTATATTCTTAACTAATGATTATACTACTGTCTTTTTGTTTATCTGTTTTGTTTATTCAAAAACATAACGTGTTTTACCGCATTGGGTTTTTTACTTTACTCTTATGCATTATTCTTCATTCTTTAATTTCAAATTCCTTGGGATTATTTTTCTGTGAAAGAAAAAATGACCCTTCTTTACTGCTTCCAAACATCTTCCACCTAGAATAATGCATTTTTTTTCTGTTATTGAATGATTATAAAATTCAATAGATTAATGCATTATCCACCTAACTAGTATCTAGTTGCATTTTTTAATTGCTACTTCCCCAAACCTAACACGATCGACAATTCATTGATGAATGGACAGGTTATCTGTGACCATTTGGGACTTGGAGTGAAGACCGGACTCCCATACATATGGCACAGCAAAGCAAGTAACCCATTTGTGAATCTGAAAAAGGAGTACAAAGGTATCTTCTGGCAAGAAGAGATCATTCCATTTTTCCAAGCTGCAACCCTTTCAAAAGATTGCACCTCTGTTCAGAAATGCTACATTGAACTCTCCAAGCAGGTCAAGGAGAAACTCGGAACTATTGATCCCTATTTCGTCAAACTAGCCGATGCTATGGTCACTTGGATTGAAGCTTGGGATGAGATTAACAACTCAGCTGAAGTGAAAACTTCAGACAAAGCTTCTGAGGCTGGTCCCAAGTGA

Protein sequence

>MS.gene40842.t1

MASSSKPTPLLKDELDIVIPTIRNLDFLEMWRPFFEQYHLIIVQDGDPSKVIKVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYIYTIDDDCFVAKDPTGHEINALEQHIKNLLSPSTPFFFNTLYDPYRDGADFVRGYPFSLREGVPTAVSHGLWLNIPDYDAPTQLVKPHERNTRFVDAVMTIPKGTLFPMCGMNLAFDRELIGPAMYFGLMGDGQPIGRYDDMWAGWCIKVICDHLGLGVKTGLPYIWHSKASNPFVNLKKEYKGIFWQEEIIPFFQAATLSKDCTSVQKCYIELSKQVKEKLGTIDPYFVKLADAMVTWIEAWDEINNSAEVKTSDKASEAGPK