AlfalfaGEDB | MS.gene42519

M. sativa cultivar XinJiangDaYe / MS.gene42519

KEGG: -
GO: GO:0000166 GO:0003674 GO:0005488 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043531 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00931.25 PF13855.9 PF18052.4

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42519.t1	XP_024625924.1	94.2	864	50	0	1	864	1	864	0.00E+00	1439.5

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42519.t1	Q7XA40	36.6	516	290	9	3	517	1	480	1.1e-87	326.2

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42519.t1	A0A396H3M7	94.2	864	50	0	1	864	1	864	0.0e+00	1439.5

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene42519	-0.816812	4.56E-52	-1.69E-46
MS.gene049281	MS.gene42519	0.804834	1.79E-49	-1.69E-46
MS.gene049320	MS.gene42519	-0.811256	7.67E-51	-1.69E-46
MS.gene049549	MS.gene42519	0.819469	1.14E-52	-1.69E-46
MS.gene049813	MS.gene42519	0.800427	1.45E-48	-1.69E-46
MS.gene050170	MS.gene42519	-0.814056	1.87E-51	-1.69E-46
MS.gene050496	MS.gene42519	-0.801384	9.24E-49	-1.69E-46
MS.gene050504	MS.gene42519	-0.816728	4.76E-52	-1.69E-46
MS.gene050577	MS.gene42519	-0.812105	5.01E-51	-1.69E-46
MS.gene050612	MS.gene42519	-0.806844	6.75E-50	-1.69E-46

Showing 1 to 10 of 67 entries

Previous1 2 3 4 5 6 7Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42519.t1	MTR_7g091550	96.222	847	32	0	1	847	1	847	0.0	1679
MS.gene42519.t1	MTR_7g091550	77.307	401	89	1	88	486	921	1321	0.0	624
MS.gene42519.t1	MTR_7g091140	67.775	872	272	3	3	869	1	868	0.0	1154
MS.gene42519.t1	MTR_7g091140	56.369	314	124	2	518	831	1093	1393	9.17e-102	345
MS.gene42519.t1	MTR_7g091140	60.816	245	85	4	163	402	854	1092	5.98e-64	235
MS.gene42519.t1	MTR_1g047910	67.436	866	280	2	3	866	1	866	0.0	1149
MS.gene42519.t1	MTR_7g491180	67.168	865	275	4	3	862	1	861	0.0	1140
MS.gene42519.t1	MTR_7g091190	67.168	865	275	4	3	862	1	861	0.0	1140
MS.gene42519.t1	MTR_7g091200	64.483	870	276	6	3	870	1	839	0.0	1080
MS.gene42519.t1	MTR_7g091110	62.286	875	298	5	3	871	1	849	0.0	1062

Showing 1 to 10 of 553 entries

Previous1 2 3 4 5…56Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42519.t1	AT3G14470	31.127	710	425	17	5	687	6	678	1.63e-90	309
MS.gene42519.t1	AT3G14470	31.127	710	425	17	5	687	6	678	1.63e-90	309
MS.gene42519.t1	AT3G14460	29.279	707	443	16	3	687	1	672	5.47e-78	277
MS.gene42519.t1	AT3G50950	27.123	730	453	19	25	711	18	711	9.58e-63	228
MS.gene42519.t1	AT3G50950	27.123	730	453	19	25	711	18	711	9.58e-63	228
MS.gene42519.t1	AT3G46730	28.037	856	501	31	11	836	5	775	7.05e-59	216
MS.gene42519.t1	AT3G46530	28.911	716	427	29	11	695	5	669	6.61e-58	213
MS.gene42519.t1	AT1G58390	26.585	899	530	31	18	839	12	857	7.05e-55	205
MS.gene42519.t1	AT1G58390	26.585	899	530	31	18	839	12	857	7.05e-55	205
MS.gene42519.t1	AT1G59780	24.973	929	570	33	3	857	1	876	2.90e-53	200

Showing 1 to 10 of 198 entries

Previous1 2 3 4 5…20Next

Find 159 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGTGCTGGAGTTCCGC+TGG	0.579889	7.1:-15973539	MS.gene42519:CDS
AAAGTCAAGAGATCAGGAAG+AGG	0.553531	7.1:-15972090	MS.gene42519:CDS
AACAACATGCCTTGTGTGAA+TGG	0.489853	7.1:-15974500	MS.gene42519:CDS
AACTCAGTTGCTTCCATGAT+GGG	0.500898	7.1:-15973694	MS.gene42519:CDS
AAGCATTGTCTCAAATAAGA+TGG	0.511553	7.1:+15973376	None:intergenic
AAGTGACATGTATCACCTCA+CGG	0.644270	7.1:-15972222	MS.gene42519:CDS
AATAGGAAGGGAGAATGACA+AGG	0.655204	7.1:-15974169	MS.gene42519:CDS
AATCCTCCAATTCCCACTAT+GGG	0.556639	7.1:+15974072	None:intergenic
AATTCTCACAAGTCCAAACT+TGG	0.485548	7.1:+15974260	None:intergenic
AATTGGTGTACAATGATAAG+AGG	0.507773	7.1:-15974029	MS.gene42519:CDS

Showing 1 to 10 of 159 entries

Previous1 2 3 4 5…16Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AATTGGTGTACAATGATAAG+AGG	-	chr7.1:15972734-15972753	MS.gene42519:CDS	30.0%
AGTCATTTCAACGACATTAA+AGG	+	chr7.1:15973445-15973464	None:intergenic	30.0%
ATACAAAGACAATGTTTCCA+GGG	+	chr7.1:15974204-15974223	None:intergenic	30.0%
ATGTTGCTAATTCACTGTTA+GGG	-	chr7.1:15972113-15972132	MS.gene42519:CDS	30.0%
CAAAGAGATTAGAGATAGAT+TGG	-	chr7.1:15972459-15972478	MS.gene42519:CDS	30.0%
CATTAAAATCTACATATCGC+AGG	+	chr7.1:15973851-15973870	None:intergenic	30.0%
CTTAAAAGGCTACATATTGT+TGG	-	chr7.1:15974494-15974513	MS.gene42519:CDS	30.0%
GAAATTGTGAAAAAATGTGC+TGG	-	chr7.1:15973213-15973232	MS.gene42519:CDS	30.0%
TAGAGATAGATTGGATAAAG+TGG	-	chr7.1:15972468-15972487	MS.gene42519:CDS	30.0%
TATAAAGAGGTAAGGAATCT+AGG	+	chr7.1:15974238-15974257	None:intergenic	30.0%

Showing 1 to 10 of 193 entries

Previous1 2 3 4 5…20Next

Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	15972085	15974700	15972085	ID=MS.gene42519
chr7.1	mRNA	15972085	15974700	15972085	ID=MS.gene42519.t1;Parent=MS.gene42519
chr7.1	exon	15972085	15974700	15972085	ID=MS.gene42519.t1.exon1;Parent=MS.gene42519.t1
chr7.1	CDS	15972085	15974700	15972085	ID=cds.MS.gene42519.t1;Parent=MS.gene42519.t1

Gene Sequence

>MS.gene42519

ATGGATATGGTCGAATCATTTGTGTTTGATGTTGCTAATTCACTGTTAGGGAAACTTGCTTCTTATGCTTATGAAGAAGCTTCTCGTGCCTATGGTGTATATGAAGATCTCCAACGGATCAAAGATACTCTATCAATTGTCAGAGGTCTACTGCTGGATGCTGAGGAGAAAAAGAACCAACAACATGCCTTGTGTGAATGGTTAAGGCAGATTCAAAACATCTGCTATGACGCTGAAGATGTATTGGATGGATTTGAGTTGCAAGACAGGAGAAAGCAATTTTTGGAAGCTTCTGGAAGCACACGGTTGAAGGTATGCCACTTCTTTTCTTGCTCTAATCCACTTGCTTTCCGTTTTAGGATGTCACGTCAAATCAAAGAGATTAGAGATAGATTGGATAAAGTGGCAGCTGATGGGACCAAGTTTGGACTTGTGAGAATTCATGTTGAGCCCGGACTTTCTGTGCACAGGAGAGAAATCACCTATTCCCATGTTGATCCTTCAAGTGTAATAGGAAGGGAGAATGACAAGGAAGCAATTATCCAGCTTTTGATGGATTCCGATCCTCAAGGTTATGGCAATGGTCATAGAAGTTTATGTGTTATTCCCATAGTGGGAATTGGAGGATTGGGGAAGACCACACTTGCAAAATTGGTGTACAATGATAAGAGGATAGATGAAGTTTTTCAATTGAAGATGTGGGCGTGTGTCTCTGTTGATTTTGATATAAGACAGATCATAATCAAAATTATCAACTCCGTTTTTACTTCAGCTGCACCAAGTGTTCCTATTGCTCCCCAAGAAGATAGCAACCACTGTGACATTGAGCAACTACAAATTCATCTAAGACGTAAACTTTCTGGCCAAAAGTTTATCCTCGTGCTAGATGATGTATGGAATGATGATCGTGCAAAATGGATTGAGTTGGAAGATTTGATCAAAGTTGGTGCAGTAGGAAGTAAAATTATAGTGACCACACGTAGCAACTCAGTTGCTTCCATGATGGGTACTGTTCCTTCATATGTTTTGGAAGGTCTTTCACAAGAGGATTGTTTGTCTCTGTTTGTGAAATGGGCATTCAAGGATGGAGAAGAAGAAAAATATCCAAATCTAGTAGAGATTGGAAAAGAAATTGTGAAAAAATGTGCTGGAGTTCCGCTGGCTGTGAGAACGGTAGGAAGTTCTCTGTTCTCAAAATTTGATTTAGATAAGTGGTTATTCGTAAGAGACCATGAGATATGGAATTTAGAACAGAAGAAAGATGATATTCTACCTGCACTAAAATTAAGCTATGATCAAATGCCATCTTATTTGAGACAATGCTTTGCTTGTTTTGCCTTGTATCCCAAAGACTATACCTTTAATGTCGTTGAAATGACTATTTTGTGGATACCCCTTGGATTAGTTCAATCCATAAATGGAAGTGAAAAGCTAGAGTATATTGCCAGAGAATATATACATGAGTTACATTCAAGATCATTGCTTCAGGATTTCAAGGACTTTGGGTACATCTGTGAGTTCAGAGTGCATGATTTGATACATGATCTTGCAATGTATGTTGCAAAAGAGGAGTTTGTAATGGTAGTATCACCTACTCGAAATATATCTGATCAAGCAAAGCATTTATCAATTGTTGAAAAGGATTCTCTTGACAAAGTTTTGTTTCCCAAGTCCAAAAGTGTAAGAACTATTTTATTTCCTGTCGAAGGAGTGGGCCTTGACAATGAAACATTGTTGAATACATGGGTATCAAATTATAAATACCTGCGATATGTAGATTTTAATGATTCTTTGTTTGAGACTCTGCCTAAATCAATTGCTAAGTTGGAGCACCTGCGTGTTCTCGGTCTCAAGAATAACAGCAAAATCAAAAGACTTCCTCATTCTGTTTTTAAACTCTATAACTTGCAAGTCTTGATACTCAGTGGTTGCACAGAGCTTGAAACATTGCCAAGAGGATTAGGCAAGATGGTCAGCCTTCAACATTTGTTTATAACCACCAAACAATCAGTTCTGTCATTGACTGAATTTATTAACTTGAAGAATCTTCAGGTTTTGGCTTTTAATCATTGTAAAAATATGAAGTTTTTATTCAGTAGGGAACAACAACTCATTTCCCTGGAAACATTGTCTTTGTATAAATGTGGGAGCCTAGATTCCTTACCTCTTTATATTTTTCCAAATTTACAAACTCTAATAATTATAGACTGCAAGATGTTAGATTTGTCGTTGAACAACGAAAGCCCAATCCAAAAATTGAGGTTGAAACATTTGTTTATTAGGGATTTTCCAGGGCTTTTGACATTGTCTGGTTGGATTGAAGGTGCTGCAGAAACTTTAGAGACCTTGCTGATTTATGAACTTCCTAATCTAACGACGCTTTCTCAGTCTCTGACAACATTGACTCATCTTAAAAGGCTACATATTGTTGGTTGCCCTCAACTAATTAGTCTTCCAAGTGACATGTATCACCTCACGGCCCTTGAAGATTTGGTCATCGAAGATTGTCCTGAGTTGTGCCGAAAATTTAAGCCACAATCTGGTGAGTACTGGCCCATGATTTCTCACATCAAAAGTGTTTTTATTGGAAAGTCAAGAGATCAGGAAGAGGAATGA

Protein sequence

>MS.gene42519.t1

MDMVESFVFDVANSLLGKLASYAYEEASRAYGVYEDLQRIKDTLSIVRGLLLDAEEKKNQQHALCEWLRQIQNICYDAEDVLDGFELQDRRKQFLEASGSTRLKVCHFFSCSNPLAFRFRMSRQIKEIRDRLDKVAADGTKFGLVRIHVEPGLSVHRREITYSHVDPSSVIGRENDKEAIIQLLMDSDPQGYGNGHRSLCVIPIVGIGGLGKTTLAKLVYNDKRIDEVFQLKMWACVSVDFDIRQIIIKIINSVFTSAAPSVPIAPQEDSNHCDIEQLQIHLRRKLSGQKFILVLDDVWNDDRAKWIELEDLIKVGAVGSKIIVTTRSNSVASMMGTVPSYVLEGLSQEDCLSLFVKWAFKDGEEEKYPNLVEIGKEIVKKCAGVPLAVRTVGSSLFSKFDLDKWLFVRDHEIWNLEQKKDDILPALKLSYDQMPSYLRQCFACFALYPKDYTFNVVEMTILWIPLGLVQSINGSEKLEYIAREYIHELHSRSLLQDFKDFGYICEFRVHDLIHDLAMYVAKEEFVMVVSPTRNISDQAKHLSIVEKDSLDKVLFPKSKSVRTILFPVEGVGLDNETLLNTWVSNYKYLRYVDFNDSLFETLPKSIAKLEHLRVLGLKNNSKIKRLPHSVFKLYNLQVLILSGCTELETLPRGLGKMVSLQHLFITTKQSVLSLTEFINLKNLQVLAFNHCKNMKFLFSREQQLISLETLSLYKCGSLDSLPLYIFPNLQTLIIIDCKMLDLSLNNESPIQKLRLKHLFIRDFPGLLTLSGWIEGAAETLETLLIYELPNLTTLSQSLTTLTHLKRLHIVGCPQLISLPSDMYHLTALEDLVIEDCPELCRKFKPQSGEYWPMISHIKSVFIGKSRDQEEE