AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene45090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45090.t1 MTR_5g035080 95.570 158 7 0 139 296 276 433 1.73e-108 322
MS.gene45090.t1 MTR_5g035080 60.294 136 48 1 52 187 42 171 1.57e-50 172
MS.gene45090.t1 MTR_5g035150 81.879 149 27 0 139 287 287 435 7.60e-85 261
MS.gene45090.t1 MTR_5g035150 60.494 81 30 1 77 155 75 155 6.12e-26 106
MS.gene45090.t1 MTR_5g035140 74.830 147 36 1 139 285 122 267 2.34e-76 234
MS.gene45090.t1 MTR_3g109840 76.190 147 34 1 139 285 272 417 1.23e-75 237
MS.gene45090.t1 MTR_3g109840 37.857 140 71 4 17 155 18 142 8.65e-20 89.0
MS.gene45090.t1 MTR_5g035070 68.354 158 48 1 139 296 289 444 1.05e-73 233
MS.gene45090.t1 MTR_5g035070 62.195 82 31 0 74 155 76 157 5.48e-29 115
MS.gene45090.t1 MTR_5g035090 71.141 149 43 0 139 287 283 431 5.37e-72 228
MS.gene45090.t1 MTR_5g035090 55.000 80 36 0 76 155 74 153 1.18e-23 100
MS.gene45090.t1 MTR_8g104970 70.548 146 42 1 139 284 322 466 2.13e-69 223
MS.gene45090.t1 MTR_8g104970 62.025 79 30 0 77 155 112 190 3.18e-27 110
MS.gene45090.t1 MTR_7g033230 67.347 147 47 1 139 285 466 611 3.25e-63 210
MS.gene45090.t1 MTR_7g033230 58.228 79 33 0 77 155 256 334 8.16e-25 104
MS.gene45090.t1 MTR_7g033230 67.347 147 47 1 139 285 536 681 9.61e-63 210
MS.gene45090.t1 MTR_7g033230 58.228 79 33 0 77 155 326 404 9.21e-25 104
MS.gene45090.t1 MTR_8g099300 43.151 146 77 4 139 283 279 419 1.46e-33 127
MS.gene45090.t1 MTR_8g099300 50.000 58 29 0 81 138 70 127 1.58e-15 76.6
MS.gene45090.t1 MTR_5g035120 54.286 105 41 2 74 172 64 167 2.98e-30 112
MS.gene45090.t1 MTR_8g027900 39.726 146 82 3 139 283 415 555 4.27e-30 119
MS.gene45090.t1 MTR_8g027900 52.727 55 26 0 85 139 211 265 8.54e-15 74.7
MS.gene45090.t1 MTR_6g016880 40.136 147 79 6 139 284 282 420 8.44e-30 117
MS.gene45090.t1 MTR_6g016880 55.556 54 24 0 85 138 78 131 5.68e-15 75.1
MS.gene45090.t1 MTR_6g016875 40.816 147 78 6 139 284 271 409 1.07e-29 117
MS.gene45090.t1 MTR_6g016875 55.556 54 24 0 85 138 64 117 2.06e-14 73.6
MS.gene45090.t1 MTR_7g019120 40.816 147 78 6 139 284 283 421 1.28e-29 117
MS.gene45090.t1 MTR_7g019120 53.704 54 25 0 85 138 79 132 6.23e-14 72.0
MS.gene45090.t1 MTR_6g007777 39.189 148 81 4 139 285 320 459 1.47e-28 114
MS.gene45090.t1 MTR_8g045360 77.419 62 14 0 1 62 1 62 2.96e-28 104
MS.gene45090.t1 MTR_5g035860 75.806 62 15 0 1 62 1 62 1.71e-27 102
MS.gene45090.t1 MTR_3g080760 74.194 62 16 0 1 62 1 62 5.32e-26 98.2
MS.gene45090.t1 MTR_7g117160 30.876 217 95 7 79 282 15 189 1.58e-25 100
MS.gene45090.t1 MTR_2g016060 35.176 199 101 11 90 285 229 402 1.04e-24 102
MS.gene45090.t1 MTR_1g076690 35.878 131 72 5 163 285 446 572 7.68e-20 89.7
MS.gene45090.t1 MTR_1g076690 43.662 71 40 0 85 155 223 293 4.56e-15 75.9
MS.gene45090.t1 MTR_6g061710 32.903 155 91 6 140 285 366 516 9.36e-19 86.7
MS.gene45090.t1 MTR_6g061710 42.254 71 41 0 85 155 167 237 8.53e-15 74.7
MS.gene45090.t1 MTR_6g016240 33.333 150 83 7 138 283 280 416 1.91e-15 76.6
MS.gene45090.t1 MTR_7g019140 53.704 54 25 0 85 138 79 132 1.97e-15 73.2
MS.gene45090.t1 MTR_7g093450 54.545 55 25 0 85 139 248 302 1.19e-14 74.3
MS.gene45090.t1 MTR_4g125060 30.657 137 75 4 148 283 393 510 1.74e-14 73.9
MS.gene45090.t1 MTR_4g125060 30.657 137 75 4 148 283 422 539 2.69e-14 73.2
MS.gene45090.t1 MTR_7g094750 44.615 65 36 0 85 149 91 155 3.02e-14 72.4
MS.gene45090.t1 MTR_4g125060 30.657 137 75 4 148 283 354 471 3.71e-14 72.8
MS.gene45090.t1 MTR_7g094750 44.615 65 36 0 85 149 91 155 5.18e-14 72.4
MS.gene45090.t1 MTR_7g094750 30.464 151 89 8 141 285 294 434 9.72e-13 68.6
MS.gene45090.t1 MTR_1g058380 33.071 127 70 6 162 285 283 397 5.45e-14 72.0
MS.gene45090.t1 MTR_3g049330 50.909 55 27 0 85 139 31 85 6.57e-14 71.6
MS.gene45090.t1 MTR_0136s0010 52.727 55 26 0 85 139 170 224 7.12e-14 72.0
MS.gene45090.t1 MTR_0136s0010 33.125 160 88 9 133 285 365 512 2.40e-12 67.4
MS.gene45090.t1 MTR_0929s0010 55.102 49 22 0 85 133 79 127 8.99e-14 67.4
MS.gene45090.t1 MTR_3g021090 47.273 55 29 0 85 139 31 85 1.06e-13 71.2
MS.gene45090.t1 MTR_3g035830 47.273 55 29 0 85 139 31 85 1.29e-13 70.9
MS.gene45090.t1 MTR_5g071350 47.458 59 31 0 81 139 54 112 8.75e-13 68.6
MS.gene45090.t1 MTR_2g022560 49.091 55 28 0 85 139 97 151 1.84e-12 67.8
MS.gene45090.t1 MTR_2g022560 30.065 153 90 6 139 287 302 441 2.63e-11 64.3
MS.gene45090.t1 MTR_2g073500 45.312 64 29 2 82 139 26 89 2.91e-12 66.6
MS.gene45090.t1 MTR_8g093530 36.620 71 45 0 85 155 90 160 4.60e-12 66.2
MS.gene45090.t1 MTR_4g126950 30.952 168 99 8 118 283 294 446 6.01e-12 66.2
MS.gene45090.t1 MTR_4g126950 40.323 62 37 0 85 146 109 170 9.50e-11 62.4
MS.gene45090.t1 MTR_4g016940 33.708 89 55 2 52 139 56 141 7.32e-12 65.9
MS.gene45090.t1 MTR_3g021060 45.455 55 30 0 85 139 46 100 7.84e-12 65.5
MS.gene45090.t1 MTR_8g093870 31.200 125 66 5 160 283 367 472 9.08e-12 65.5
MS.gene45090.t1 MTR_5g034810 47.619 63 31 1 77 139 27 87 1.11e-11 65.1
MS.gene45090.t1 MTR_5g059400 42.667 75 38 2 70 139 155 229 1.14e-11 65.5
MS.gene45090.t1 MTR_5g059400 30.719 153 85 9 150 294 389 528 3.77e-11 63.9
MS.gene45090.t1 MTR_1g116130 42.667 75 38 2 70 139 155 229 1.14e-11 65.5
MS.gene45090.t1 MTR_1g116130 30.719 153 85 9 150 294 389 528 3.77e-11 63.9
MS.gene45090.t1 MTR_8g463790 47.458 59 30 1 82 139 68 126 1.38e-11 65.1
MS.gene45090.t1 MTR_2g091175 45.455 55 30 0 85 139 50 104 1.73e-11 64.3
MS.gene45090.t1 MTR_4g088030 43.636 55 31 0 85 139 33 87 4.04e-11 63.2
MS.gene45090.t1 MTR_1g111010 45.312 64 33 2 78 139 25 88 5.05e-11 63.2
MS.gene45090.t1 MTR_5g033800 43.333 60 33 1 79 138 140 198 5.70e-11 62.8
MS.gene45090.t1 MTR_3g090120 27.000 200 104 7 54 242 104 272 5.95e-11 63.2
MS.gene45090.t1 MTR_7g068920 37.879 66 40 1 74 138 69 134 6.38e-11 62.8
MS.gene45090.t1 MTR_3g464570 45.763 59 32 0 81 139 39 97 6.99e-11 62.8
MS.gene45090.t1 MTR_5g033800 43.333 60 33 1 79 138 140 198 7.96e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45090.t1 AT1G70230 48.322 149 62 4 139 286 280 414 1.84e-41 148
MS.gene45090.t1 AT1G70230 55.128 78 35 0 78 155 72 149 3.45e-24 101
MS.gene45090.t1 AT3G02440 41.447 152 81 3 139 289 338 482 1.48e-32 125
MS.gene45090.t1 AT3G02440 55.556 54 24 0 85 138 135 188 4.29e-14 72.8
MS.gene45090.t1 AT3G02440 41.447 152 81 3 139 289 330 474 1.49e-32 125
MS.gene45090.t1 AT3G02440 55.556 54 24 0 85 138 127 180 4.82e-14 72.4
MS.gene45090.t1 AT5G15890 41.718 163 71 7 132 284 375 523 4.32e-30 119
MS.gene45090.t1 AT5G15890 38.095 84 49 1 55 138 160 240 1.08e-14 74.7
MS.gene45090.t1 AT1G01430 40.789 152 77 5 139 283 302 447 6.29e-30 118
MS.gene45090.t1 AT1G01430 52.727 55 26 0 85 139 99 153 1.03e-15 77.4
MS.gene45090.t1 AT3G28150 36.364 165 80 6 135 285 259 412 2.04e-28 113
MS.gene45090.t1 AT3G28150 44.000 75 37 1 70 139 50 124 2.37e-17 82.0
MS.gene45090.t1 AT4G01080 38.889 144 82 4 141 281 288 428 6.65e-28 112
MS.gene45090.t1 AT4G01080 44.186 86 48 0 64 149 70 155 6.72e-19 86.7
MS.gene45090.t1 AT4G23790 38.356 146 86 4 141 283 283 427 5.27e-26 106
MS.gene45090.t1 AT4G23790 52.174 69 32 1 80 147 74 142 8.51e-18 83.6
MS.gene45090.t1 AT5G15900 38.312 154 83 7 139 290 273 416 1.19e-24 103
MS.gene45090.t1 AT5G15900 45.098 51 28 0 85 135 67 117 8.73e-11 62.8
MS.gene45090.t1 AT5G15900 38.312 154 83 7 139 290 292 435 1.50e-24 102
MS.gene45090.t1 AT5G15900 45.098 51 28 0 85 135 86 136 8.54e-11 62.8
MS.gene45090.t1 AT4G11090 37.931 145 86 4 141 283 283 425 1.74e-23 99.8
MS.gene45090.t1 AT4G11090 55.738 61 26 1 80 139 74 134 1.49e-17 82.8
MS.gene45090.t1 AT4G25360 32.468 154 93 5 141 285 375 526 1.55e-18 85.9
MS.gene45090.t1 AT4G25360 41.892 74 43 0 82 155 172 245 1.78e-14 73.9
MS.gene45090.t1 AT4G25360 32.468 154 93 5 141 285 375 526 1.55e-18 85.9
MS.gene45090.t1 AT4G25360 41.892 74 43 0 82 155 172 245 1.78e-14 73.9
MS.gene45090.t1 AT5G51640 32.934 167 95 8 140 294 337 498 1.48e-17 83.2
MS.gene45090.t1 AT5G51640 40.541 74 44 0 82 155 135 208 5.13e-14 72.4
MS.gene45090.t1 AT2G14530 33.987 153 79 8 138 283 269 406 1.89e-16 79.3
MS.gene45090.t1 AT5G19160 31.210 157 102 4 139 294 304 455 2.31e-15 76.3
MS.gene45090.t1 AT5G19160 42.254 71 41 0 85 155 99 169 1.79e-13 70.9
MS.gene45090.t1 AT2G30900 52.727 55 26 0 85 139 43 97 3.25e-15 74.7
MS.gene45090.t1 AT5G64020 33.333 129 70 4 160 283 291 408 7.54e-15 74.7
MS.gene45090.t1 AT2G30900 52.727 55 26 0 85 139 43 97 8.10e-15 74.3
MS.gene45090.t1 AT3G11570 31.788 151 77 7 140 283 288 419 8.72e-15 74.7
MS.gene45090.t1 AT5G06700 50.909 55 27 0 85 139 255 309 6.52e-14 72.4
MS.gene45090.t1 AT5G19160 46.154 65 35 0 85 149 99 163 7.52e-14 71.2
MS.gene45090.t1 AT5G20680 30.952 126 67 4 159 283 445 551 1.50e-13 71.2
MS.gene45090.t1 AT5G20680 30.952 126 67 4 159 283 445 551 1.50e-13 71.2
MS.gene45090.t1 AT5G20680 30.952 126 67 4 159 283 445 551 1.50e-13 71.2
MS.gene45090.t1 AT5G20680 30.952 126 67 4 159 283 445 551 1.50e-13 71.2
MS.gene45090.t1 AT5G20680 30.952 126 67 4 159 283 351 457 1.80e-13 70.9
MS.gene45090.t1 AT5G20680 30.952 126 67 4 159 283 427 533 1.89e-13 70.9
MS.gene45090.t1 AT3G06080 30.201 149 93 6 141 285 306 447 2.11e-13 70.5
MS.gene45090.t1 AT3G06080 36.620 71 45 0 85 155 103 173 9.70e-11 62.4
MS.gene45090.t1 AT1G48880 40.000 70 42 0 80 149 110 179 2.17e-13 70.5
MS.gene45090.t1 AT2G30010 48.387 62 30 1 80 139 94 155 2.76e-13 70.1
MS.gene45090.t1 AT2G30010 37.500 96 57 2 46 139 18 112 3.27e-13 69.7
MS.gene45090.t1 AT3G12060 47.273 55 29 0 85 139 196 250 3.66e-13 70.1
MS.gene45090.t1 AT3G12060 32.298 161 89 9 139 293 400 546 1.28e-11 65.5
MS.gene45090.t1 AT3G62390 35.484 93 56 1 51 139 100 192 2.76e-12 67.0
MS.gene45090.t1 AT3G62390 45.902 61 31 1 79 139 134 192 5.50e-12 66.2
MS.gene45090.t1 AT2G42570 49.091 55 28 0 85 139 47 101 9.78e-12 65.1
MS.gene45090.t1 AT3G14850 47.273 55 29 0 85 139 34 88 1.33e-11 64.7
MS.gene45090.t1 AT2G31110 40.000 65 39 0 75 139 35 99 2.69e-11 63.2
MS.gene45090.t1 AT2G40160 41.379 87 46 3 68 149 56 142 2.70e-11 63.5
MS.gene45090.t1 AT5G49340 43.636 55 31 0 85 139 100 154 3.24e-11 63.9
MS.gene45090.t1 AT2G40160 41.379 87 46 3 68 149 56 142 4.85e-11 63.5
MS.gene45090.t1 AT1G78710 43.421 76 34 4 70 139 12 84 5.92e-11 62.4
MS.gene45090.t1 AT2G40160 41.379 87 46 3 68 149 56 142 6.17e-11 63.2
MS.gene45090.t1 AT3G06080 36.620 71 45 0 85 155 103 173 7.47e-11 62.4
MS.gene45090.t1 AT2G31110 45.455 55 30 0 85 139 45 99 7.76e-11 62.4
MS.gene45090.t1 AT2G40320 44.828 58 31 1 82 138 78 135 8.10e-11 62.8
MS.gene45090.t1 AT5G58600 47.273 55 28 1 85 138 66 120 8.40e-11 62.0
MS.gene45090.t1 AT5G01360 29.870 77 53 1 74 149 25 101 9.39e-11 62.4

Find 64 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCATTAAGAAAGGCTTTA+AGG 0.121836 5.3:+24003957 MS.gene45090:intron
TCTACTCCTCCTCATTATTC+AGG 0.242819 5.3:+24002482 MS.gene45090:CDS
GACGGATTGCGACTGTTCTA+AGG 0.277825 5.3:+23999809 MS.gene45090:CDS
GGAAAGGGTGAGAAGAAAAT+TGG 0.278867 5.3:+24004115 MS.gene45090:CDS
GTGACTACTTCAATGGAAAA+TGG 0.286087 5.3:+24003363 MS.gene45090:CDS
CAAACTACCTTTACTATAGA+TGG 0.299980 5.3:+24003477 MS.gene45090:CDS
TGTGTTCATTGGTGTTTGCC+TGG 0.324131 5.3:+24004337 MS.gene45090:CDS
CTTGGAAGATTGCACTCATT+TGG 0.324777 5.3:-24003503 None:intergenic
GCGACTGTTCTTGAACTGTT+AGG 0.332717 5.3:+23999849 MS.gene45090:CDS
TTGAGAGGAATGTTGCTAAA+AGG 0.338137 5.3:+24003999 MS.gene45090:CDS
TCTTGAACTGTTAGGGATGT+TGG 0.363934 5.3:+23999857 MS.gene45090:CDS
CTTGAACTGTTAGGGATGTT+GGG 0.364206 5.3:+23999858 MS.gene45090:CDS
TGTTCAAAGACTGAACCTTA+TGG 0.369816 5.3:+24004094 MS.gene45090:CDS
AGATGATGAAGAAGTGGGAT+TGG 0.380315 5.3:+24004392 MS.gene45090:CDS
AGGGATTAGATTTGAGGTAA+TGG 0.398286 5.3:+24004213 MS.gene45090:CDS
AAATGGAAAGTGAGATTAGA+AGG 0.401729 5.3:+24004140 MS.gene45090:CDS
TTCTTCTCACCCTTTCCATA+AGG 0.411285 5.3:-24004109 None:intergenic
CATGTTGTTCCATTGTATAA+AGG 0.411961 5.3:-24003404 None:intergenic
GCCGCTGCAACAGCCGCAAT+GGG 0.413215 5.3:+23999915 MS.gene45090:CDS
CGACTGTTCTTGAACTGTTA+GGG 0.432178 5.3:+23999850 MS.gene45090:CDS
TGCAAAATGATTGTGTTCAT+TGG 0.437679 5.3:+24004326 MS.gene45090:CDS
ATTTGGAGGGATTAGATTTG+AGG 0.443087 5.3:+24004207 MS.gene45090:CDS
CATCCATGTGACTACTTCAA+TGG 0.447132 5.3:+24003356 MS.gene45090:CDS
ACACCGTTAGCGAACGGAAA+AGG 0.447241 5.3:-24004292 None:intergenic
GGTAATGGATGTAACTGAAT+TGG 0.467735 5.3:+24004228 MS.gene45090:CDS
TAAGCACCTGGATGACCATC+TGG 0.468486 5.3:-24004262 None:intergenic
ATGTCTCACTCTTCACTCCT+TGG 0.471169 5.3:-24004424 None:intergenic
GATGAAGAAGTGGGATTGGA+AGG 0.471664 5.3:+24004396 MS.gene45090:CDS
GTTGCTAAAAGGAATGGAAT+TGG 0.473091 5.3:+24004010 MS.gene45090:CDS
AAGGACTGAGATTGAAGAAG+TGG 0.477771 5.3:+24004159 MS.gene45090:CDS
TAGTAAAGGTAGTTTGAGTC+TGG 0.478277 5.3:-24003470 None:intergenic
ATCTCATTCCAAGTATCTAT+AGG 0.478611 5.3:-24004361 None:intergenic
TTGAGACCAGATGGTCATCC+AGG 0.479603 5.3:+24004256 MS.gene45090:CDS
GTGTTCATTGGTGTTTGCCT+GGG 0.480611 5.3:+24004338 MS.gene45090:CDS
TGCCTGGGCCTATAGATACT+TGG 0.482132 5.3:+24004353 MS.gene45090:CDS
AGCCGCTGCAACAGCCGCAA+TGG 0.483257 5.3:+23999914 MS.gene45090:CDS
ACCCATTGCGGCTGTTGCAG+CGG 0.495196 5.3:-23999916 None:intergenic
TCTAGAGATGATGAAGAAGT+GGG 0.498464 5.3:+24004387 MS.gene45090:CDS
TTGGTTTCCATCTATAGTAA+AGG 0.502522 5.3:-24003484 None:intergenic
GTTTGAGTCTGGTCTCCCAT+TGG 0.504311 5.3:-24003459 None:intergenic
AGGAATGTTGCTAAAAGGAA+TGG 0.507199 5.3:+24004004 MS.gene45090:CDS
GATGGTGATTGGGATAAGGC+TGG 0.512386 5.3:+24004067 MS.gene45090:CDS
TTCTAGAGATGATGAAGAAG+TGG 0.512711 5.3:+24004386 MS.gene45090:CDS
AAGACTGAACCTTATGGAAA+GGG 0.515408 5.3:+24004100 MS.gene45090:CDS
GACAAAACTGTATCACCAAT+GGG 0.533968 5.3:+24003444 MS.gene45090:CDS
CAAATGAGTGCAATCTTCCA+AGG 0.538693 5.3:+24003504 MS.gene45090:CDS
ACGGATTGCGACTGTTCTAA+GGG 0.540883 5.3:+23999810 MS.gene45090:CDS
TTGAACTGTTAGGGATGTTG+GGG 0.547031 5.3:+23999859 MS.gene45090:CDS
AAAGACTGAACCTTATGGAA+AGG 0.548583 5.3:+24004099 MS.gene45090:CDS
TTCCAAGTATCTATAGGCCC+AGG 0.563711 5.3:-24004355 None:intergenic
ACATGTGGAACAATCAAAGA+AGG 0.566099 5.3:+24003422 MS.gene45090:CDS
TTATACAATGGAACAACATG+TGG 0.569031 5.3:+24003407 MS.gene45090:CDS
GGACAAAACTGTATCACCAA+TGG 0.578285 5.3:+24003443 MS.gene45090:CDS
ATGAAGAAGTGGGATTGGAA+GGG 0.584115 5.3:+24004397 MS.gene45090:CDS
AACTGTCGCAATACCCATTG+CGG 0.599981 5.3:-23999928 None:intergenic
ATTAACATACCTGAATAATG+AGG 0.612033 5.3:-24002491 None:intergenic
CAATCACCATCAAAATGAGA+AGG 0.616511 5.3:-24004055 None:intergenic
TTTCCATTGAAGTAGTCACA+TGG 0.617272 5.3:-24003359 None:intergenic
TTCGGAACACCGTTAGCGAA+CGG 0.617341 5.3:-24004298 None:intergenic
AAAGGATTCATATAAGCACC+TGG 0.621291 5.3:-24004274 None:intergenic
GTCTTAATAGCATAATTGAG+AGG 0.623475 5.3:+24003984 MS.gene45090:CDS
TTGGCATTGTTGAGACCAGA+TGG 0.642859 5.3:+24004247 MS.gene45090:CDS
GGGATTGGAAGGGACAGCCA+AGG 0.651431 5.3:+24004407 MS.gene45090:CDS
AACATACCTGAATAATGAGG+AGG 0.659116 5.3:-24002488 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAGATTTATTTAAACTATT+TGG + chr5.3:24003252-24003271 MS.gene45090:intron 10.0%
!!! TTTTAATAAAAGATACAATA+AGG - chr5.3:24003153-24003172 None:intergenic 10.0%
!! AAATGTATTGTATTAAAACT+TGG - chr5.3:24003764-24003783 None:intergenic 15.0%
!! GTACTATATTTAATTAAATG+AGG + chr5.3:24002714-24002733 MS.gene45090:intron 15.0%
!! TATAAATAAAGAAGAACAAT+AGG - chr5.3:24002407-24002426 None:intergenic 15.0%
!!! AAACATATATAGATTTTGTT+TGG - chr5.3:24000234-24000253 None:intergenic 15.0%
!!! TTTTTAAAGGAAAAATGATT+AGG + chr5.3:24002602-24002621 MS.gene45090:intron 15.0%
!! AAAATAGTTCATTGTTGATA+TGG - chr5.3:24000771-24000790 None:intergenic 20.0%
!! ACATTACAGAATAGAAAAAA+GGG + chr5.3:24000652-24000671 MS.gene45090:intron 20.0%
!! ACTAGTTAATTAGTTAAGAT+TGG - chr5.3:24000914-24000933 None:intergenic 20.0%
!! ATAATAGAGATCATACATTA+AGG + chr5.3:24000168-24000187 MS.gene45090:intron 20.0%
!! CCAAATTAAATAAAATTCAC+AGG + chr5.3:24001785-24001804 MS.gene45090:intron 20.0%
!! TAATTAAATGAGGTAATCAT+TGG + chr5.3:24002724-24002743 MS.gene45090:intron 20.0%
!! TGATAAGCTCTTAAATATTA+AGG - chr5.3:24001133-24001152 None:intergenic 20.0%
!! TTAAATAAATCTAATCAGAG+TGG - chr5.3:24003246-24003265 None:intergenic 20.0%
!!! ACATTTTTCTTTTGTTTGAA+AGG + chr5.3:23999968-23999987 MS.gene45090:intron 20.0%
!!! ATGATTAGGTGTTTTTTTAA+AGG + chr5.3:24002589-24002608 MS.gene45090:intron 20.0%
!!! ATGTGGTTTTATATACATTT+GGG - chr5.3:24001497-24001516 None:intergenic 20.0%
!!! ATTTTTCTTTTGTTTGAAAG+GGG + chr5.3:23999970-23999989 MS.gene45090:intron 20.0%
!!! CATTTTTCTTTTGTTTGAAA+GGG + chr5.3:23999969-23999988 MS.gene45090:intron 20.0%
!!! CCTGTGAATTTTATTTAATT+TGG - chr5.3:24001788-24001807 None:intergenic 20.0%
!!! TACCTTTATTTGTTCAAATT+CGG + chr5.3:24001847-24001866 MS.gene45090:intron 20.0%
!!! TTTTTATGTTCCATTAAGAA+AGG + chr5.3:24003949-24003968 MS.gene45090:intron 20.0%
! AAAAAAGGGTGAAAATAAGA+AGG + chr5.3:24000666-24000685 MS.gene45090:intron 25.0%
! AAAAAAGGTCCTTTATACAA+TGG + chr5.3:24003395-24003414 MS.gene45090:CDS 25.0%
! AAGAAAAAAGCAAATGCATT+TGG + chr5.3:24004190-24004209 MS.gene45090:CDS 25.0%
! AATAGACTATGAAAAAGCAA+AGG - chr5.3:24000495-24000514 None:intergenic 25.0%
! AATATACCTTACGATAAATC+TGG - chr5.3:24002916-24002935 None:intergenic 25.0%
! ACATAATTGTGATAGTTCAT+TGG - chr5.3:24001536-24001555 None:intergenic 25.0%
! ACCTTTCTAAGTTATAATTG+CGG + chr5.3:24001575-24001594 MS.gene45090:intron 25.0%
! AGTTTATTATGAGAATGGTT+TGG + chr5.3:24003874-24003893 MS.gene45090:intron 25.0%
! ATTAACATACCTGAATAATG+AGG - chr5.3:24002494-24002513 None:intergenic 25.0%
! ATTCACACTTGAAAATGATT+AGG + chr5.3:24002575-24002594 MS.gene45090:intron 25.0%
! GACATTACAGAATAGAAAAA+AGG + chr5.3:24000651-24000670 MS.gene45090:intron 25.0%
! TAATCAATAGAGTTTGTGTT+GGG - chr5.3:24001673-24001692 None:intergenic 25.0%
! TATTCTATTCTATTCCACTT+GGG + chr5.3:24002223-24002242 MS.gene45090:intron 25.0%
! TCGAAAAATATATGTTTCGA+CGG + chr5.3:24002978-24002997 MS.gene45090:intron 25.0%
! TGAGAAGAAAATTGGAAAAA+TGG + chr5.3:24004123-24004142 MS.gene45090:CDS 25.0%
! TGTTGAATTGAACACTAAAA+TGG + chr5.3:24002627-24002646 MS.gene45090:intron 25.0%
! TTAATCAATAGAGTTTGTGT+TGG - chr5.3:24001674-24001693 None:intergenic 25.0%
! TTCAACTACTCTAATTAACA+TGG - chr5.3:24002672-24002691 None:intergenic 25.0%
! TTCCGAATTTGAACAAATAA+AGG - chr5.3:24001852-24001871 None:intergenic 25.0%
! TTGTGTTATCATTTGGAAAT+TGG + chr5.3:24003834-24003853 MS.gene45090:intron 25.0%
!! AAATGGATTCATGACAAAAA+AGG + chr5.3:24003380-24003399 MS.gene45090:CDS 25.0%
!! AACAAACACATATCTTTTGT+TGG + chr5.3:24003560-24003579 MS.gene45090:intron 25.0%
!! ATATTCGATGACATCATTTT+GGG - chr5.3:24001734-24001753 None:intergenic 25.0%
!! TATCGTAAGGTATATTTCTA+TGG + chr5.3:24002920-24002939 MS.gene45090:intron 25.0%
!! TGAAATTGCAATTGTTTTCT+AGG - chr5.3:24000603-24000622 None:intergenic 25.0%
!!! GATGTGGTTTTATATACATT+TGG - chr5.3:24001498-24001517 None:intergenic 25.0%
!!! TATAACTTAGAAAGGTATCA+GGG - chr5.3:24001571-24001590 None:intergenic 25.0%
!!! TTATAACTTAGAAAGGTATC+AGG - chr5.3:24001572-24001591 None:intergenic 25.0%
!!! TTATTTTACTTTCAACAGAG+AGG - chr5.3:24000518-24000537 None:intergenic 25.0%
!!! TTTACTTCACGCAAATTTTT+TGG + chr5.3:24002190-24002209 MS.gene45090:intron 25.0%
AAAAAAGCAAATGCATTTGG+AGG + chr5.3:24004193-24004212 MS.gene45090:CDS 30.0%
AAAAAGCAAATGCATTTGGA+GGG + chr5.3:24004194-24004213 MS.gene45090:CDS 30.0%
AAACCTCTGATATACAATCA+TGG + chr5.3:24003203-24003222 MS.gene45090:intron 30.0%
AAAGTAGTAGGAGTTAACTT+GGG + chr5.3:24000699-24000718 MS.gene45090:intron 30.0%
AAATGGAAAGTGAGATTAGA+AGG + chr5.3:24004140-24004159 MS.gene45090:CDS 30.0%
AACCTCTGATATACAATCAT+GGG + chr5.3:24003204-24003223 MS.gene45090:intron 30.0%
ACAATTCTGTAATAGGATTC+AGG + chr5.3:24001106-24001125 MS.gene45090:intron 30.0%
AGTAGAAGATGAAGTGTATA+TGG - chr5.3:24002368-24002387 None:intergenic 30.0%
ATCTCATTCCAAGTATCTAT+AGG - chr5.3:24004364-24004383 None:intergenic 30.0%
ATGAAGTGTATATGGAAGAA+GGG - chr5.3:24002360-24002379 None:intergenic 30.0%
CAAACTACCTTTACTATAGA+TGG + chr5.3:24003477-24003496 MS.gene45090:CDS 30.0%
CAATTCTGTAATAGGATTCA+GGG + chr5.3:24001107-24001126 MS.gene45090:intron 30.0%
CATGTTGTTCCATTGTATAA+AGG - chr5.3:24003407-24003426 None:intergenic 30.0%
CCATTCTCATAATAAACTGA+AGG - chr5.3:24003872-24003891 None:intergenic 30.0%
CCTTCAGTTTATTATGAGAA+TGG + chr5.3:24003869-24003888 MS.gene45090:intron 30.0%
CTATTCTATTCTATTCCACT+TGG + chr5.3:24002222-24002241 MS.gene45090:intron 30.0%
GGAAACAAATAGAAAGTAGT+AGG + chr5.3:24000687-24000706 MS.gene45090:intron 30.0%
GGATATTAATGTTTAGTCTC+TGG - chr5.3:24001244-24001263 None:intergenic 30.0%
GGTCTTAATTACACTGATAT+TGG + chr5.3:24003926-24003945 MS.gene45090:intron 30.0%
GTCTTAATAGCATAATTGAG+AGG + chr5.3:24003984-24004003 MS.gene45090:CDS 30.0%
TAGTCTGTTACATAACTTCA+TGG - chr5.3:24000885-24000904 None:intergenic 30.0%
TATTGTATTAAAACTTGGCC+CGG - chr5.3:24003759-24003778 None:intergenic 30.0%
TCCGCAATTATAACTTAGAA+AGG - chr5.3:24001579-24001598 None:intergenic 30.0%
TGCAAAATGATTGTGTTCAT+TGG + chr5.3:24004326-24004345 MS.gene45090:CDS 30.0%
TTAAAAGTGAGAAGAGCTTT+CGG - chr5.3:24003121-24003140 None:intergenic 30.0%
TTAAACACTTGTAGTGAGAA+AGG + chr5.3:24002802-24002821 MS.gene45090:intron 30.0%
TTAGGATGCTTAAATTGTTC+CGG + chr5.3:24003899-24003918 MS.gene45090:intron 30.0%
TTATACAATGGAACAACATG+TGG + chr5.3:24003407-24003426 MS.gene45090:CDS 30.0%
TTCCATTAAGAAAGGCTTTA+AGG + chr5.3:24003957-24003976 MS.gene45090:intron 30.0%
TTGGTTTCCATCTATAGTAA+AGG - chr5.3:24003487-24003506 None:intergenic 30.0%
! AAAATTGTGGAAGTTTTCAG+AGG - chr5.3:24000312-24000331 None:intergenic 30.0%
! ACAGTCAATTTTCTTCAACA+TGG - chr5.3:24001208-24001227 None:intergenic 30.0%
! CAATCATTTTGCACATACTT+CGG - chr5.3:24004319-24004338 None:intergenic 30.0%
! GAGATTTTGTAAGAGACAAA+GGG - chr5.3:24002436-24002455 None:intergenic 30.0%
! GATAGTTCATTGGAATGTTT+TGG - chr5.3:24001526-24001545 None:intergenic 30.0%
! GATATTCGATGACATCATTT+TGG - chr5.3:24001735-24001754 None:intergenic 30.0%
! GTTTCACTGTTGTTTAATAG+AGG - chr5.3:24001884-24001903 None:intergenic 30.0%
! GTTTGAAACTTGATGTTTCA+TGG + chr5.3:24000190-24000209 MS.gene45090:intron 30.0%
! TGAGATTTTGTAAGAGACAA+AGG - chr5.3:24002437-24002456 None:intergenic 30.0%
!! GTGTCTTTTATCTTGTTTAC+AGG - chr5.3:24000826-24000845 None:intergenic 30.0%
!! TCCACAATTTTAAGAACCAA+TGG + chr5.3:24000321-24000340 MS.gene45090:intron 30.0%
!! TCTTTTATCTTGTTTACAGG+AGG - chr5.3:24000823-24000842 None:intergenic 30.0%
!!! TATGAGAATGGTTTGGTTTT+AGG + chr5.3:24003881-24003900 MS.gene45090:intron 30.0%
!!! TGTGTTTGTTTTTGCTTAGT+TGG - chr5.3:24003550-24003569 None:intergenic 30.0%
!!! TTCTCATTTTGATGGTGATT+GGG + chr5.3:24004057-24004076 MS.gene45090:CDS 30.0%
AAAGACTGAACCTTATGGAA+AGG + chr5.3:24004099-24004118 MS.gene45090:CDS 35.0%
AAAGGATTCATATAAGCACC+TGG - chr5.3:24004277-24004296 None:intergenic 35.0%
AACATACCTGAATAATGAGG+AGG - chr5.3:24002491-24002510 None:intergenic 35.0%
AAGACTGAACCTTATGGAAA+GGG + chr5.3:24004100-24004119 MS.gene45090:CDS 35.0%
ACATGTGGAACAATCAAAGA+AGG + chr5.3:24003422-24003441 MS.gene45090:CDS 35.0%
AGACTATGAAAAAGCAAAGG+CGG - chr5.3:24000492-24000511 None:intergenic 35.0%
AGCAGAAAACAAAGTAGGAA+AGG + chr5.3:24002268-24002287 MS.gene45090:intron 35.0%
AGGAATGTTGCTAAAAGGAA+TGG + chr5.3:24004004-24004023 MS.gene45090:CDS 35.0%
AGGCATGACAATTCTGTAAT+AGG + chr5.3:24001099-24001118 MS.gene45090:intron 35.0%
AGTGTAATTAAGACCGAAAC+CGG - chr5.3:24003921-24003940 None:intergenic 35.0%
ATACCTTACGATAAATCTGG+AGG - chr5.3:24002913-24002932 None:intergenic 35.0%
ATGCAACATTATCCGTGTAT+TGG + chr5.3:24003696-24003715 MS.gene45090:intron 35.0%
ATTTGGAGGGATTAGATTTG+AGG + chr5.3:24004207-24004226 MS.gene45090:CDS 35.0%
CAAAAAATTGGCGAAGGATA+TGG + chr5.3:24003796-24003815 MS.gene45090:intron 35.0%
CAATCACCATCAAAATGAGA+AGG - chr5.3:24004058-24004077 None:intergenic 35.0%
CCATCATGAATGAGAAAAAG+AGG + chr5.3:24001076-24001095 MS.gene45090:intron 35.0%
CGTTAACAAAAAATTGGCGA+AGG + chr5.3:24003790-24003809 MS.gene45090:intron 35.0%
CTATGAGCAGAAAACAAAGT+AGG + chr5.3:24002263-24002282 MS.gene45090:intron 35.0%
CTGTGTATACTGAAGAAAGA+GGG - chr5.3:24001947-24001966 None:intergenic 35.0%
GAAAGTAGTAGGAGTTAACT+TGG + chr5.3:24000698-24000717 MS.gene45090:intron 35.0%
GACAAAACTGTATCACCAAT+GGG + chr5.3:24003444-24003463 MS.gene45090:CDS 35.0%
GATGAAGTGTATATGGAAGA+AGG - chr5.3:24002361-24002380 None:intergenic 35.0%
GATGTTTCATGGATTCTTTG+CGG + chr5.3:24000201-24000220 MS.gene45090:intron 35.0%
GCTAAAACTCTTGCAATGTT+TGG - chr5.3:24000801-24000820 None:intergenic 35.0%
GGTGATGAAAGATCAAAATC+CGG + chr5.3:24003737-24003756 MS.gene45090:intron 35.0%
GTCCTTAAAGCCTTTCTTAA+TGG - chr5.3:24003962-24003981 None:intergenic 35.0%
GTGACTACTTCAATGGAAAA+TGG + chr5.3:24003363-24003382 MS.gene45090:CDS 35.0%
GTGATGAAAGATCAAAATCC+GGG + chr5.3:24003738-24003757 MS.gene45090:intron 35.0%
GTTGCTAAAAGGAATGGAAT+TGG + chr5.3:24004010-24004029 MS.gene45090:CDS 35.0%
TAAAGAGCAACTACCTAAAC+TGG - chr5.3:24002867-24002886 None:intergenic 35.0%
TACCTAAACTGGATATCATG+AGG - chr5.3:24002856-24002875 None:intergenic 35.0%
TACCTTACGATAAATCTGGA+GGG - chr5.3:24002912-24002931 None:intergenic 35.0%
TAGTAAAGGTAGTTTGAGTC+TGG - chr5.3:24003473-24003492 None:intergenic 35.0%
TCATGAATGAGAAAAAGAGG+AGG + chr5.3:24001079-24001098 MS.gene45090:intron 35.0%
TCTAGAGATGATGAAGAAGT+GGG + chr5.3:24004387-24004406 MS.gene45090:CDS 35.0%
TCTGTGTATACTGAAGAAAG+AGG - chr5.3:24001948-24001967 None:intergenic 35.0%
TGCAAAGAAGAGACTCAAAT+TGG - chr5.3:24003604-24003623 None:intergenic 35.0%
TGCTTAAATTGTTCCGGTTT+CGG + chr5.3:24003905-24003924 MS.gene45090:intron 35.0%
TGTTCAAAGACTGAACCTTA+TGG + chr5.3:24004094-24004113 MS.gene45090:CDS 35.0%
TTGAGAGGAATGTTGCTAAA+AGG + chr5.3:24003999-24004018 MS.gene45090:CDS 35.0%
TTGGGTTTAGTAATCAGTAG+AGG - chr5.3:24001479-24001498 None:intergenic 35.0%
TTTCCATTGAAGTAGTCACA+TGG - chr5.3:24003362-24003381 None:intergenic 35.0%
TTTGAATTAGCTCAAGCCAT+TGG - chr5.3:24000340-24000359 None:intergenic 35.0%
! AAAGTGTTTGGTTCAAACCT+TGG - chr5.3:24003524-24003543 None:intergenic 35.0%
! AGGGATTAGATTTGAGGTAA+TGG + chr5.3:24004213-24004232 MS.gene45090:CDS 35.0%
! ATCGATTCAATACACTGGTT+AGG - chr5.3:24000985-24001004 None:intergenic 35.0%
! CCTCTTTTTCTCATTCATGA+TGG - chr5.3:24001079-24001098 None:intergenic 35.0%
! GACTTGGTTGTGTTATCATT+TGG + chr5.3:24003827-24003846 MS.gene45090:intron 35.0%
! TAAACTTCCTGTTTCTCACT+TGG - chr5.3:24002034-24002053 None:intergenic 35.0%
! TAGTGAGAAAGGTACAAGTA+AGG + chr5.3:24002813-24002832 MS.gene45090:intron 35.0%
! TCGATTCAATACACTGGTTA+GGG - chr5.3:24000984-24001003 None:intergenic 35.0%
! TTCCTGTTTAAAGCAACACA+TGG + chr5.3:24003008-24003027 MS.gene45090:intron 35.0%
! TTCTAGAGATGATGAAGAAG+TGG + chr5.3:24004386-24004405 MS.gene45090:CDS 35.0%
! TTTTCGCCTTCTCATTTTGA+TGG + chr5.3:24004049-24004068 MS.gene45090:CDS 35.0%
! TTTTGCGACCCTTAAAATGA+CGG + chr5.3:23999791-23999810 MS.gene45090:CDS 35.0%
!! CTTAGTTGGAGAAAAGTGTT+TGG - chr5.3:24003536-24003555 None:intergenic 35.0%
!! GCCATTGGTTCTTAAAATTG+TGG - chr5.3:24000325-24000344 None:intergenic 35.0%
!! GGTAATGGATGTAACTGAAT+TGG + chr5.3:24004228-24004247 MS.gene45090:CDS 35.0%
!! TGTCACCGTTTTGATGTTTT+GGG + chr5.3:24003058-24003077 MS.gene45090:intron 35.0%
!! TTCCATGTGTTGCTTTAAAC+AGG - chr5.3:24003013-24003032 None:intergenic 35.0%
!! TTGTCACCGTTTTGATGTTT+TGG + chr5.3:24003057-24003076 MS.gene45090:intron 35.0%
!!! CTTCACGCAAATTTTTTGGA+AGG + chr5.3:24002194-24002213 MS.gene45090:intron 35.0%
!!! CTTCTCATTTTGATGGTGAT+TGG + chr5.3:24004056-24004075 MS.gene45090:CDS 35.0%
!!! GAATGTTTTGGTAGTTGATG+TGG - chr5.3:24001514-24001533 None:intergenic 35.0%
!!! GGTTTTTTTTCCAGAGCAAA+AGG - chr5.3:24001652-24001671 None:intergenic 35.0%
!!! TTTTGATGGTGATTGGGATA+AGG + chr5.3:24004063-24004082 MS.gene45090:CDS 35.0%
AAAATCCCATTGCAGCAGTT+TGG + chr5.3:24000038-24000057 MS.gene45090:intron 40.0%
AAATTGGCGAAGGATATGGA+TGG + chr5.3:24003800-24003819 MS.gene45090:intron 40.0%
AACAAGCTTCCCGATGAATT+TGG - chr5.3:24000437-24000456 None:intergenic 40.0%
AACAGCAAGAATTGAGCATG+AGG - chr5.3:24000570-24000589 None:intergenic 40.0%
AACGGTGACAATTCTGTAGA+TGG - chr5.3:24003048-24003067 None:intergenic 40.0%
AAGAAAGAGGGCTATCTACT+AGG - chr5.3:24001935-24001954 None:intergenic 40.0%
AAGAAATGGCGACCAATACA+CGG - chr5.3:24003711-24003730 None:intergenic 40.0%
AAGGACTGAGATTGAAGAAG+TGG + chr5.3:24004159-24004178 MS.gene45090:CDS 40.0%
AAGTGACATGTGATGAAGGT+TGG - chr5.3:24001371-24001390 None:intergenic 40.0%
ACCAATGTGAACCTTTATGG+TGG - chr5.3:24003658-24003677 None:intergenic 40.0%
ACCATAAAGGTTCACATTGG+TGG + chr5.3:24003657-24003676 MS.gene45090:intron 40.0%
ACTATTCATGTTGTCGTGCT+TGG - chr5.3:24001609-24001628 None:intergenic 40.0%
AGATGATGAAGAAGTGGGAT+TGG + chr5.3:24004392-24004411 MS.gene45090:CDS 40.0%
AGTAATCAGTAGAGGTGATG+TGG - chr5.3:24001471-24001490 None:intergenic 40.0%
ATGAAGAAGTGGGATTGGAA+GGG + chr5.3:24004397-24004416 MS.gene45090:CDS 40.0%
CAAATGAGTGCAATCTTCCA+AGG + chr5.3:24003504-24003523 MS.gene45090:CDS 40.0%
CACCCATGATTGTATATCAG+AGG - chr5.3:24003209-24003228 None:intergenic 40.0%
CACCTCATGATATCCAGTTT+AGG + chr5.3:24002851-24002870 MS.gene45090:intron 40.0%
CATCCATGTGACTACTTCAA+TGG + chr5.3:24003356-24003375 MS.gene45090:CDS 40.0%
CGACTGTTCTTGAACTGTTA+GGG + chr5.3:23999850-23999869 MS.gene45090:CDS 40.0%
CTAAACACCAAGTGAGAAAC+AGG + chr5.3:24002024-24002043 MS.gene45090:intron 40.0%
CTTGAACTGTTAGGGATGTT+GGG + chr5.3:23999858-23999877 MS.gene45090:CDS 40.0%
CTTGGAAGATTGCACTCATT+TGG - chr5.3:24003506-24003525 None:intergenic 40.0%
GAATTGCAGATTGAGTCTGA+AGG + chr5.3:24001975-24001994 MS.gene45090:intron 40.0%
GACTCAATCTGCAATTCTCA+AGG - chr5.3:24001972-24001991 None:intergenic 40.0%
GCTATCTACTAGGATGATCA+AGG - chr5.3:24001925-24001944 None:intergenic 40.0%
GGAAAGGGTGAGAAGAAAAT+TGG + chr5.3:24004115-24004134 MS.gene45090:CDS 40.0%
GGACAAAACTGTATCACCAA+TGG + chr5.3:24003443-24003462 MS.gene45090:CDS 40.0%
GTAGAAAAACGAGCAAGAAG+TGG - chr5.3:24001407-24001426 None:intergenic 40.0%
GTGTGTGTCTGTGTTAGTTA+AGG - chr5.3:24000953-24000972 None:intergenic 40.0%
TCACAAGTGACATGTGATGA+AGG - chr5.3:24001375-24001394 None:intergenic 40.0%
TCATCACCTTGCACAAGAAA+TGG - chr5.3:24003725-24003744 None:intergenic 40.0%
TCCACCATAAAGGTTCACAT+TGG + chr5.3:24003654-24003673 MS.gene45090:intron 40.0%
TCTACTCCTCCTCATTATTC+AGG + chr5.3:24002482-24002501 MS.gene45090:CDS 40.0%
TCTGTAGATGGTTGCTCTTT+AGG - chr5.3:24003036-24003055 None:intergenic 40.0%
TCTTGAACTGTTAGGGATGT+TGG + chr5.3:23999857-23999876 MS.gene45090:CDS 40.0%
TGAAGGTTGGAACCATCATT+CGG - chr5.3:24001358-24001377 None:intergenic 40.0%
TTCTTCTCACCCTTTCCATA+AGG - chr5.3:24004112-24004131 None:intergenic 40.0%
TTGAACTGTTAGGGATGTTG+GGG + chr5.3:23999859-23999878 MS.gene45090:CDS 40.0%
TTTCATGAGCAGAAGTCTTG+AGG + chr5.3:24000618-24000637 MS.gene45090:intron 40.0%
! AAAGGTACAAGTAAGGCCTT+TGG + chr5.3:24002820-24002839 MS.gene45090:intron 40.0%
! AATCCTTTTCCGTTCGCTAA+CGG + chr5.3:24004289-24004308 MS.gene45090:CDS 40.0%
! AGTAGGAGTTAACTTGGGTA+TGG + chr5.3:24000704-24000723 MS.gene45090:intron 40.0%
! AGTTTCACTACCTTTTGCTC+TGG + chr5.3:24001639-24001658 MS.gene45090:intron 40.0%
! CAATTGCATGAGAGTACGTT+TGG - chr5.3:24001265-24001284 None:intergenic 40.0%
! CGATTCAATACACTGGTTAG+GGG - chr5.3:24000983-24001002 None:intergenic 40.0%
! TCATGCTCAATTCTTGCTGT+TGG + chr5.3:24000569-24000588 MS.gene45090:intron 40.0%
!! AGTCGCAATCCGTCATTTTA+AGG - chr5.3:23999803-23999822 None:intergenic 40.0%
!! GAAGCTTGTTGAAGACATCA+CGG + chr5.3:24000447-24000466 MS.gene45090:intron 40.0%
!! GTCGCAATCCGTCATTTTAA+GGG - chr5.3:23999802-23999821 None:intergenic 40.0%
AACTGTCGCAATACCCATTG+CGG - chr5.3:23999931-23999950 None:intergenic 45.0%
AATATCTCGCTGTACCTGCA+AGG + chr5.3:24001749-24001768 MS.gene45090:intron 45.0%
ACAGTTCCAAACTGCTGCAA+TGG - chr5.3:24000047-24000066 None:intergenic 45.0%
ACCGGCCCAAAACATCAAAA+CGG - chr5.3:24003066-24003085 None:intergenic 45.0%
ACCTGCAAGGATATGCAAAG+TGG + chr5.3:24001762-24001781 MS.gene45090:intron 45.0%
ACTCATGAGCTTGAAGCTTG+AGG - chr5.3:24000399-24000418 None:intergenic 45.0%
AGCCCTCCAGATTTATCGTA+AGG + chr5.3:24002907-24002926 MS.gene45090:intron 45.0%
CAAGCTTCAAGCTCATGAGT+TGG + chr5.3:24000399-24000418 MS.gene45090:intron 45.0%
CAGTTCCAAACTGCTGCAAT+GGG - chr5.3:24000046-24000065 None:intergenic 45.0%
CCTAAACCTGTCCACCATAA+AGG + chr5.3:24003644-24003663 MS.gene45090:intron 45.0%
CTCATGAGCTTGAAGCTTGA+GGG - chr5.3:24000398-24000417 None:intergenic 45.0%
GAGGCTAGTACGTCGAAAAT+TGG - chr5.3:24000551-24000570 None:intergenic 45.0%
GATGAAGAAGTGGGATTGGA+AGG + chr5.3:24004396-24004415 MS.gene45090:CDS 45.0%
GCCACCAATGTGAACCTTTA+TGG - chr5.3:24003661-24003680 None:intergenic 45.0%
GCGACTGTTCTTGAACTGTT+AGG + chr5.3:23999849-23999868 MS.gene45090:CDS 45.0%
TCATGAGCTTGAAGCTTGAG+GGG - chr5.3:24000397-24000416 None:intergenic 45.0%
TCGGTGTAACTAAACTCCGA+TGG - chr5.3:24003102-24003121 None:intergenic 45.0%
TGGAGGGCTTCATAGCAATA+CGG - chr5.3:24002896-24002915 None:intergenic 45.0%
TTCATGGATTCTTTGCGGCA+TGG + chr5.3:24000206-24000225 MS.gene45090:intron 45.0%
TTCCAAGTATCTATAGGCCC+AGG - chr5.3:24004358-24004377 None:intergenic 45.0%
TTGGCATTGTTGAGACCAGA+TGG + chr5.3:24004247-24004266 MS.gene45090:CDS 45.0%
! ACGGATTGCGACTGTTCTAA+GGG + chr5.3:23999810-23999829 MS.gene45090:CDS 45.0%
! AGTCGGACAAACAGCTTGTT+AGG - chr5.3:24000372-24000391 None:intergenic 45.0%
! ATGAGGTGTCATGAGACCAA+AGG - chr5.3:24002839-24002858 None:intergenic 45.0%
! CTCTTTTGTGATGTCCCAAG+TGG - chr5.3:24002240-24002259 None:intergenic 45.0%
! GGATATGGATGGAATGGACT+TGG + chr5.3:24003811-24003830 MS.gene45090:intron 45.0%
! GTGTTCATTGGTGTTTGCCT+GGG + chr5.3:24004338-24004357 MS.gene45090:CDS 45.0%
! GTTTTCAGAGGTAGTGTGTC+TGG - chr5.3:24000300-24000319 None:intergenic 45.0%
! TGTGTTCATTGGTGTTTGCC+TGG + chr5.3:24004337-24004356 MS.gene45090:CDS 45.0%
!! ACCGTTTTGATGTTTTGGGC+CGG + chr5.3:24003062-24003081 MS.gene45090:intron 45.0%
!! CCTTTATGGTGGACAGGTTT+AGG - chr5.3:24003647-24003666 None:intergenic 45.0%
!! GATGTTTTGGGCCGGTTAAT+GGG + chr5.3:24003070-24003089 MS.gene45090:intron 45.0%
!! GCGACATCGATTCAATACAC+TGG - chr5.3:24000990-24001009 None:intergenic 45.0%
!! TGATGTTTTGGGCCGGTTAA+TGG + chr5.3:24003069-24003088 MS.gene45090:intron 45.0%
!! TGTGAACCTTTATGGTGGAC+AGG - chr5.3:24003653-24003672 None:intergenic 45.0%
ACACCGTTAGCGAACGGAAA+AGG - chr5.3:24004295-24004314 None:intergenic 50.0%
ACCTCGGAGCCAAATTCATC+GGG + chr5.3:24000425-24000444 MS.gene45090:intron 50.0%
AGGGCTTCATAGCAATACGG+AGG - chr5.3:24002893-24002912 None:intergenic 50.0%
CACCTCGGAGCCAAATTCAT+CGG + chr5.3:24000424-24000443 MS.gene45090:intron 50.0%
GATGGTGATTGGGATAAGGC+TGG + chr5.3:24004067-24004086 MS.gene45090:CDS 50.0%
GGCGAAGGATATGGATGGAA+TGG + chr5.3:24003805-24003824 MS.gene45090:intron 50.0%
GGGCTTCATAGCAATACGGA+GGG - chr5.3:24002892-24002911 None:intergenic 50.0%
GTTTGAGTCTGGTCTCCCAT+TGG - chr5.3:24003462-24003481 None:intergenic 50.0%
TAAGCACCTGGATGACCATC+TGG - chr5.3:24004265-24004284 None:intergenic 50.0%
TGCCTGGGCCTATAGATACT+TGG + chr5.3:24004353-24004372 MS.gene45090:CDS 50.0%
TGGTCGCCATTTCTTGTGCA+AGG + chr5.3:24003716-24003735 MS.gene45090:intron 50.0%
TTCGGAACACCGTTAGCGAA+CGG - chr5.3:24004301-24004320 None:intergenic 50.0%
TTGAAGCTTGAGGGGTCAGT+CGG - chr5.3:24000389-24000408 None:intergenic 50.0%
TTGAGACCAGATGGTCATCC+AGG + chr5.3:24004256-24004275 MS.gene45090:CDS 50.0%
! GCCACTTTGCATATCCTTGC+AGG - chr5.3:24001766-24001785 None:intergenic 50.0%
!! ACGATGTCGACTCACTTCTC+AGG - chr5.3:24001709-24001728 None:intergenic 50.0%
!! GACGGATTGCGACTGTTCTA+AGG + chr5.3:23999809-23999828 MS.gene45090:CDS 50.0%
!! GCTCATGAGTTGGTTCACCT+CGG + chr5.3:24000409-24000428 MS.gene45090:intron 50.0%
GATGGCCGTGACCCATTAAC+CGG - chr5.3:24003084-24003103 None:intergenic 55.0%
GGAACCATCATTCGGTCGAG+AGG - chr5.3:24001350-24001369 None:intergenic 55.0%
GTCACCTCTCGACCGAATGA+TGG + chr5.3:24001343-24001362 MS.gene45090:intron 55.0%
! GGTTAATGGGTCACGGCCAT+CGG + chr5.3:24003083-24003102 MS.gene45090:intron 55.0%
! TCCCGATGAATTTGGCTCCG+AGG - chr5.3:24000429-24000448 None:intergenic 55.0%
! TTGGGCCGGTTAATGGGTCA+CGG + chr5.3:24003076-24003095 MS.gene45090:intron 55.0%
ACCCATTGCGGCTGTTGCAG+CGG - chr5.3:23999919-23999938 None:intergenic 60.0%
GGGATTGGAAGGGACAGCCA+AGG + chr5.3:24004407-24004426 MS.gene45090:CDS 60.0%
AGCCGCTGCAACAGCCGCAA+TGG + chr5.3:23999914-23999933 MS.gene45090:CDS 65.0%
GCCGCTGCAACAGCCGCAAT+GGG + chr5.3:23999915-23999934 MS.gene45090:CDS 65.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 23999786 24004441 23999786 ID=MS.gene45090
chr5.3 mRNA 23999786 24004441 23999786 ID=MS.gene45090.t1;Parent=MS.gene45090
chr5.3 exon 23999786 23999965 23999786 ID=MS.gene45090.t1.exon1;Parent=MS.gene45090.t1
chr5.3 CDS 23999786 23999965 23999786 ID=cds.MS.gene45090.t1;Parent=MS.gene45090.t1
chr5.3 exon 24002464 24002503 24002464 ID=MS.gene45090.t1.exon2;Parent=MS.gene45090.t1
chr5.3 CDS 24002464 24002503 24002464 ID=cds.MS.gene45090.t1;Parent=MS.gene45090.t1
chr5.3 exon 24003330 24003525 24003330 ID=MS.gene45090.t1.exon3;Parent=MS.gene45090.t1
chr5.3 CDS 24003330 24003525 24003330 ID=cds.MS.gene45090.t1;Parent=MS.gene45090.t1
chr5.3 exon 24003967 24004441 24003967 ID=MS.gene45090.t1.exon4;Parent=MS.gene45090.t1
chr5.3 CDS 24003967 24004441 24003967 ID=cds.MS.gene45090.t1;Parent=MS.gene45090.t1
Gene Sequence

>MS.gene45090

ATGCATTTTGCGACCCTTAAAATGACGGATTGCGACTGTTCTAAGGGTCGCAAATTCACATCTGCGACTGTTCTTGAACTGTTAGGGATGTTGGGGTCGCAACAGCATTTTGCGACAGTTCACGAAACAGCCGCTGCAACAGCCGCAATGGGTATTGCGACAGTTCAAAACAGTCGCAAAGTACATTTTTCTTTTGTTTGAAAGGGGTGTTGCGACAGTTCAAAACAGTCGCAATTGATGAAAAATATTTTTAAAATCCCATTGCAGCAGTTTGGAACTGTCGCAATTGTTGAATTTATTTAAAAAAAATAAATCAGTTTAATTATACTCGAAACATATCGTCAAACGTTATCTCATCAAATGTGAGACTCTTATTATAACAATAATAGAGATCATACATTAAGGTTTGAAACTTGATGTTTCATGGATTCTTTGCGGCATGGTTCCAAACAAAATCTATATATGTTTCAGACAAAATTATACAGATCATATACATCATGTACACATCTTTCCAGACACACTACCTCTGAAAACTTCCACAATTTTAAGAACCAATGGCTTGAGCTAATTCAAAATAATGATGCCTAACAAGCTGTTTGTCCGACTGACCCCTCAAGCTTCAAGCTCATGAGTTGGTTCACCTCGGAGCCAAATTCATCGGGAAGCTTGTTGAAGACATCACGGCAAAATCTAGAGATCATAGCCGCCTTTGCTTTTTCATAGTCTATTCCTCTCTGTTGAAAGTAAAATAACTGATATTCACCAATTTTCGACGTACTAGCCTCATGCTCAATTCTTGCTGTTGGATTTTTCACCTAGAAAACAATTGCAATTTCATGAGCAGAAGTCTTGAGGCAAGTTTCTTGACATTACAGAATAGAAAAAAGGGTGAAAATAAGAAGGAAACAAATAGAAAGTAGTAGGAGTTAACTTGGGTATGGAAACTGTGCACAATATTGCTATCAAATAAACAGAGCTAAATCCATATCAACAATGAACTATTTTGTCTCAACCAAACATTGCAAGAGTTTTAGCCTCCTGTAAACAAGATAAAAGACACGCTTCTTCAAGCTATATGTATACACAACTTGCTTTTCCATGAAGTTATGTAACAGACTAACTAAGCCAATCTTAACTAATTAACTAGTTTGCATTAAAAATGTGCCTTAACTAACACAGACACACACATTATGTCCCCTAACCAGTGTATTGAATCGATGTCGCTCTTAAGAACGTTTGCAATGTCAAGTTAGATAGTCTTTGTTGTTCATTAAAACTTAACATTATTCACCATCATGAATGAGAAAAAGAGGAGGCATGACAATTCTGTAATAGGATTCAGGGCCTTAATATTTAAGAGCTTATCATATAAGAAAGACAACAGTTAAAGTTGATTGTGAGTGTTTAACGAAATCAGTTCCATGTTGAAGAAAATTGACTGTGAATGTTTATAAACCAGAGACTAAACATTAATATCCAAACGTACTCTCATGCAATTGCAACGTAAAAGAAGCATTGAACAAATCTTAAATCTTATTTGAATCAATTCAAAAGTGTGTCACCTCTCGACCGAATGATGGTTCCAACCTTCATCACATGTCACTTGTGAGATTTGCATCCACTTCTTGCTCGTTTTTCTACAAGAACAAAAATCAGTAAATCACTCATCAAACACACACAAACCACATCACCTCTACTGATTACTAAACCCAAATGTATATAAAACCACATCAACTACCAAAACATTCCAATGAACTATCACAATTATGTATACAAACTCTGCCCTGATACCTTTCTAAGTTATAATTGCGGAAAAGAAACCAAGCACGACAACATGAATAGTCTCATGCATAAGTTTCACTACCTTTTGCTCTGGAAAAAAAACCCAACACAAACTCTATTGATTAATTAACTAACTAACCTGAGAAGTGAGTCGACATCGTTACCCAAAATGATGTCATCGAATATCTCGCTGTACCTGCAAGGATATGCAAAGTGGCCAAATTAAATAAAATTCACAGGTACATTGATGATGATATCTTGTTGTTCTAATTTCTTGAATACCTTTATTTGTTCAAATTCGGAAACGATATAGCCTCTATTAAACAACAGTGAAACTGCAAATTTATTGATAAACCTTGATCATCCTAGTAGATAGCCCTCTTTCTTCAGTATACACAGAACCTTGAGAATTGCAGATTGAGTCTGAAGGTTTAGATTTTGTATGTTCATTTGATTCTAAACACCAAGTGAGAAACAGGAAGTTTAGTTCATGCGTTAGAATGAAAAAATGATTTACATAATAATAAGATAAACAACAATCAAGAAGTGTGCATAGTTTTCAACTTACATGAGTGTGTGTATTAATTGAAAATAGTACTAAGTTAGAAACACTTGAACTACGTTTACTTCACGCAAATTTTTTGGAAGGAAAATCTATTCTATTCTATTCCACTTGGGACATCACAAAAGAGAGACTATGAGCAGAAAACAAAGTAGGAAAGGAAGCACAAAAAAATGCTTTCAAAATGAAAAGTACAATGAAAGATGATTCAATTTCACTCTCTAAGACCCTTCTTCCATATACACTTCATCTTCTACTTCTCATAGCTCTCTTACCTATTGTTCTTCTTTATTTATACTTTTACCCTTTGTCTCTTACAAAATCTCAAACTCAGCTTCATCATGCAACTATTTCTACTCCTCCTCATTATTCAGGTATGTTAATGCATAACTTTGTCTTCTTTAAACTAATCATGTGTCTCATAGTATGTGTCTATTTTAAAGTAATTCACACTTGAAAATGATTAGGTGTTTTTTTAAAGGAAAAATGATTAGGTGTGTTGAATTGAACACTAAAATGGTGTGTATAGTCTTAAAAATCCATGTTAATTAGAGTAGTTGAAAGTAGTAGTTGAATAGTTAAGTGTACTATATTTAATTAAATGAGGTAATCATTGGAAACAAATAGTAAATATTTTTTTGTATTCTAAAATGACAAATAATTTTAAGAGAATTAAACACTTGTAGTGAGAAAGGTACAAGTAAGGCCTTTGGTCTCATGACACCTCATGATATCCAGTTTAGGTAGTTGCTCTTTAAGCCCTCCGTATTGCTATGAAGCCCTCCAGATTTATCGTAAGGTATATTTCTATGGTGTACTTTTTAACTCTTTTTATCGAAAGATATATTTCGAAAAATATATGTTTCGACGGTGTATTTTTCCTGTTTAAAGCAACACATGGAACCTAAAGAGCAACCATCTACAGAATTGTCACCGTTTTGATGTTTTGGGCCGGTTAATGGGTCACGGCCATCGGAGTTTAGTTACACCGAAAGCTCTTCTCACTTTTAATGAGAAGAGCCTTATTGTATCTTTTATTAAAATGTTTGTGTCTTATAATTATTGTATCTTTAAAACCTCTGATATACAATCATGGGTGTATTGTCAACTGAGCCACTCTGATTAGATTTATTTAAACTATTTGGAATATTAGAATTTAGATTTATACATGTAATTAACATATTGATATTCTATTGACAGTAAATGACAAACACAAAATTGATGAGCATCCATGTGACTACTTCAATGGAAAATGGATTCATGACAAAAAAGGTCCTTTATACAATGGAACAACATGTGGAACAATCAAAGAAGGACAAAACTGTATCACCAATGGGAGACCAGACTCAAACTACCTTTACTATAGATGGAAACCAAATGAGTGCAATCTTCCAAGGTTTGAACCAAACACTTTTCTCCAACTAAGCAAAAACAAACACATATCTTTTGTTGGTGATTCTTTAGCTAGAAACCAATTTGAGTCTCTTCTTTGCATGTTATCAATTGTTTCAAAACCTAAACCTGTCCACCATAAAGGTTCACATTGGTGGCATTTTTCTTCTCATAATGCAACATTATCCGTGTATTGGTCGCCATTTCTTGTGCAAGGTGATGAAAGATCAAAATCCGGGCCAAGTTTTAATACAATACATTTGGATCGCGTTAACAAAAAATTGGCGAAGGATATGGATGGAATGGACTTGGTTGTGTTATCATTTGGAAATTGGTTTATTAATGTTCCTTCAGTTTATTATGAGAATGGTTTGGTTTTAGGATGCTTAAATTGTTCCGGTTTCGGTCTTAATTACACTGATATTGGTTTTTATGTTCCATTAAGAAAGGCTTTAAGGACTTGTCTTAATAGCATAATTGAGAGGAATGTTGCTAAAAGGAATGGAATTGGTGTAATTGTGAAAACTTTTTCGCCTTCTCATTTTGATGGTGATTGGGATAAGGCTGGAACATGTTCAAAGACTGAACCTTATGGAAAGGGTGAGAAGAAAATTGGAAAAATGGAAAGTGAGATTAGAAGGACTGAGATTGAAGAAGTGGAAAATGCTAAGAAAAAAGCAAATGCATTTGGAGGGATTAGATTTGAGGTAATGGATGTAACTGAATTGGCATTGTTGAGACCAGATGGTCATCCAGGTGCTTATATGAATCCTTTTCCGTTCGCTAACGGTGTTCCGAAGTATGTGCAAAATGATTGTGTTCATTGGTGTTTGCCTGGGCCTATAGATACTTGGAATGAGATTTTTCTAGAGATGATGAAGAAGTGGGATTGGAAGGGACAGCCAAGGAGTGAAGAGTGA
Protein sequence

>MS.gene45090.t1

MHFATLKMTDCDCSKGRKFTSATVLELLGMLGSQQHFATVHETAAATAAMGIATVQNSRKLHHATISTPPHYSVNDKHKIDEHPCDYFNGKWIHDKKGPLYNGTTCGTIKEGQNCITNGRPDSNYLYYRWKPNECNLPRKALRTCLNSIIERNVAKRNGIGVIVKTFSPSHFDGDWDKAGTCSKTEPYGKGEKKIGKMESEIRRTEIEEVENAKKKANAFGGIRFEVMDVTELALLRPDGHPGAYMNPFPFANGVPKYVQNDCVHWCLPGPIDTWNEIFLEMMKKWDWKGQPRSEE