Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47830.t1 | XP_003604656.1 | 96.9 | 226 | 7 | 0 | 1 | 226 | 1 | 226 | 2.50E-122 | 449.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47830.t1 | Q8LAD0 | 77.7 | 211 | 47 | 0 | 245 | 455 | 19 | 229 | 8.6e-92 | 339.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47830.t1 | G7JN27 | 96.9 | 226 | 7 | 0 | 1 | 226 | 1 | 226 | 1.8e-122 | 449.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene47830 | 0.835529 | 1.59E-56 | -1.69E-46 |
| MS.gene049171 | MS.gene47830 | 0.828548 | 8.46E-55 | -1.69E-46 |
| MS.gene049173 | MS.gene47830 | 0.826452 | 2.69E-54 | -1.69E-46 |
| MS.gene049427 | MS.gene47830 | 0.820779 | 5.73E-53 | -1.69E-46 |
| MS.gene049609 | MS.gene47830 | 0.822155 | 2.76E-53 | -1.69E-46 |
| MS.gene049633 | MS.gene47830 | 0.820768 | 5.76E-53 | -1.69E-46 |
| MS.gene049805 | MS.gene47830 | 0.832411 | 9.60E-56 | -1.69E-46 |
| MS.gene050747 | MS.gene47830 | 0.817357 | 3.44E-52 | -1.69E-46 |
| MS.gene050772 | MS.gene47830 | 0.822237 | 2.64E-53 | -1.69E-46 |
| MS.gene05080 | MS.gene47830 | 0.820278 | 7.46E-53 | -1.69E-46 |
| MS.gene05081 | MS.gene47830 | 0.841467 | 4.67E-58 | -1.69E-46 |
| MS.gene050950 | MS.gene47830 | 0.811037 | 8.55E-51 | -1.69E-46 |
| MS.gene05105 | MS.gene47830 | 0.817204 | 3.72E-52 | -1.69E-46 |
| MS.gene051666 | MS.gene47830 | 0.827092 | 1.89E-54 | -1.69E-46 |
| MS.gene051838 | MS.gene47830 | 0.840123 | 1.05E-57 | -1.69E-46 |
| MS.gene052136 | MS.gene47830 | 0.804945 | 1.69E-49 | -1.69E-46 |
| MS.gene052310 | MS.gene47830 | 0.805946 | 1.04E-49 | -1.69E-46 |
| MS.gene052322 | MS.gene47830 | 0.817231 | 3.67E-52 | -1.69E-46 |
| MS.gene052414 | MS.gene47830 | 0.815429 | 9.29E-52 | -1.69E-46 |
| MS.gene052421 | MS.gene47830 | 0.804635 | 1.97E-49 | -1.69E-46 |
| MS.gene052481 | MS.gene47830 | 0.823074 | 1.68E-53 | -1.69E-46 |
| MS.gene052484 | MS.gene47830 | 0.808939 | 2.42E-50 | -1.69E-46 |
| MS.gene052501 | MS.gene47830 | 0.804319 | 2.29E-49 | -1.69E-46 |
| MS.gene052505 | MS.gene47830 | 0.809965 | 1.46E-50 | -1.69E-46 |
| MS.gene052615 | MS.gene47830 | 0.823689 | 1.21E-53 | -1.69E-46 |
| MS.gene052870 | MS.gene47830 | 0.833762 | 4.43E-56 | -1.69E-46 |
| MS.gene052872 | MS.gene47830 | 0.850166 | 2.02E-60 | -1.69E-46 |
| MS.gene053103 | MS.gene47830 | 0.827221 | 1.76E-54 | -1.69E-46 |
| MS.gene053104 | MS.gene47830 | 0.811256 | 7.67E-51 | -1.69E-46 |
| MS.gene053207 | MS.gene47830 | 0.804168 | 2.46E-49 | -1.69E-46 |
| MS.gene053632 | MS.gene47830 | 0.811049 | 8.50E-51 | -1.69E-46 |
| MS.gene053824 | MS.gene47830 | 0.818244 | 2.17E-52 | -1.69E-46 |
| MS.gene053912 | MS.gene47830 | 0.834023 | 3.81E-56 | -1.69E-46 |
| MS.gene053916 | MS.gene47830 | 0.817391 | 3.38E-52 | -1.69E-46 |
| MS.gene05494 | MS.gene47830 | 0.813396 | 2.61E-51 | -1.69E-46 |
| MS.gene05505 | MS.gene47830 | 0.809978 | 1.45E-50 | -1.69E-46 |
| MS.gene055206 | MS.gene47830 | 0.839123 | 1.91E-57 | -1.69E-46 |
| MS.gene055289 | MS.gene47830 | 0.818386 | 2.01E-52 | -1.69E-46 |
| MS.gene055722 | MS.gene47830 | 0.818312 | 2.09E-52 | -1.69E-46 |
| MS.gene056511 | MS.gene47830 | 0.80527 | 1.45E-49 | -1.69E-46 |
| MS.gene056897 | MS.gene47830 | 0.810841 | 9.43E-51 | -1.69E-46 |
| MS.gene057076 | MS.gene47830 | 0.802493 | 5.46E-49 | -1.69E-46 |
| MS.gene057124 | MS.gene47830 | 0.811903 | 5.55E-51 | -1.69E-46 |
| MS.gene057196 | MS.gene47830 | 0.802226 | 6.20E-49 | -1.69E-46 |
| MS.gene057416 | MS.gene47830 | 0.817153 | 3.82E-52 | -1.69E-46 |
| MS.gene057658 | MS.gene47830 | 0.821417 | 4.08E-53 | -1.69E-46 |
| MS.gene057734 | MS.gene47830 | 0.810438 | 1.15E-50 | -1.69E-46 |
| MS.gene057831 | MS.gene47830 | 0.802438 | 5.61E-49 | -1.69E-46 |
| MS.gene058338 | MS.gene47830 | 0.829892 | 3.99E-55 | -1.69E-46 |
| MS.gene058376 | MS.gene47830 | 0.804761 | 1.85E-49 | -1.69E-46 |
| MS.gene058419 | MS.gene47830 | 0.804114 | 2.52E-49 | -1.69E-46 |
| MS.gene058544 | MS.gene47830 | 0.804195 | 2.43E-49 | -1.69E-46 |
| MS.gene058838 | MS.gene47830 | 0.846948 | 1.58E-59 | -1.69E-46 |
| MS.gene059023 | MS.gene47830 | 0.821243 | 4.48E-53 | -1.69E-46 |
| MS.gene05934 | MS.gene47830 | 0.81037 | 1.19E-50 | -1.69E-46 |
| MS.gene059455 | MS.gene47830 | 0.82324 | 1.54E-53 | -1.69E-46 |
| MS.gene060403 | MS.gene47830 | 0.80501 | 1.64E-49 | -1.69E-46 |
| MS.gene060469 | MS.gene47830 | 0.803404 | 3.54E-49 | -1.69E-46 |
| MS.gene060762 | MS.gene47830 | 0.80802 | 3.80E-50 | -1.69E-46 |
| MS.gene060835 | MS.gene47830 | 0.804676 | 1.93E-49 | -1.69E-46 |
| MS.gene06092 | MS.gene47830 | 0.818628 | 1.77E-52 | -1.69E-46 |
| MS.gene061150 | MS.gene47830 | 0.823687 | 1.21E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47830.t1 | MTR_4g015600 | 96.903 | 226 | 7 | 0 | 1 | 226 | 1 | 226 | 1.44e-163 | 461 |
| MS.gene47830.t1 | MTR_4g015590 | 94.619 | 223 | 12 | 0 | 243 | 465 | 18 | 240 | 2.08e-149 | 426 |
| MS.gene47830.t1 | MTR_4g015600 | 98.876 | 178 | 2 | 0 | 1 | 178 | 1 | 178 | 2.94e-129 | 372 |
| MS.gene47830.t1 | MTR_7g068290 | 76.364 | 220 | 51 | 1 | 6 | 224 | 1 | 220 | 5.28e-122 | 356 |
| MS.gene47830.t1 | MTR_4g088950 | 63.229 | 223 | 82 | 0 | 2 | 224 | 3 | 225 | 1.04e-106 | 317 |
| MS.gene47830.t1 | MTR_2g013080 | 63.256 | 215 | 79 | 0 | 10 | 224 | 14 | 228 | 6.31e-103 | 307 |
| MS.gene47830.t1 | MTR_4g015600 | 95.333 | 150 | 7 | 0 | 77 | 226 | 24 | 173 | 4.58e-102 | 303 |
| MS.gene47830.t1 | MTR_3g463720 | 60.465 | 215 | 85 | 0 | 10 | 224 | 6 | 220 | 1.04e-93 | 283 |
| MS.gene47830.t1 | MTR_3g463720 | 58.376 | 197 | 82 | 0 | 28 | 224 | 23 | 219 | 1.37e-81 | 253 |
| MS.gene47830.t1 | MTR_4g088950 | 62.011 | 179 | 68 | 0 | 2 | 180 | 3 | 181 | 9.11e-80 | 246 |
| MS.gene47830.t1 | MTR_2g013080 | 61.143 | 175 | 68 | 0 | 10 | 184 | 14 | 188 | 7.07e-77 | 241 |
| MS.gene47830.t1 | MTR_4g015600 | 94.828 | 116 | 6 | 0 | 111 | 226 | 2 | 117 | 1.09e-76 | 236 |
| MS.gene47830.t1 | MTR_4g015600 | 98.039 | 102 | 2 | 0 | 77 | 178 | 24 | 125 | 5.11e-68 | 213 |
| MS.gene47830.t1 | MTR_8g079910 | 41.991 | 231 | 127 | 3 | 1 | 224 | 1 | 231 | 2.06e-56 | 188 |
| MS.gene47830.t1 | MTR_3g086130 | 42.731 | 227 | 121 | 3 | 7 | 224 | 10 | 236 | 1.64e-54 | 183 |
| MS.gene47830.t1 | MTR_8g079910 | 40.541 | 185 | 103 | 3 | 1 | 178 | 1 | 185 | 5.96e-38 | 137 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47830.t1 | AT5G60540 | 80.000 | 200 | 40 | 0 | 245 | 444 | 19 | 218 | 6.04e-118 | 346 |
| MS.gene47830.t1 | AT3G47160 | 71.889 | 217 | 61 | 0 | 9 | 225 | 5 | 221 | 1.47e-117 | 345 |
| MS.gene47830.t1 | AT5G01520 | 72.350 | 217 | 60 | 0 | 6 | 222 | 1 | 217 | 2.60e-115 | 339 |
| MS.gene47830.t1 | AT3G47160 | 68.122 | 229 | 61 | 1 | 9 | 225 | 5 | 233 | 6.42e-114 | 336 |
| MS.gene47830.t1 | AT5G58787 | 66.667 | 216 | 69 | 1 | 9 | 224 | 5 | 217 | 1.24e-99 | 299 |
| MS.gene47830.t1 | AT3G47160 | 70.652 | 184 | 54 | 0 | 42 | 225 | 1 | 184 | 2.96e-97 | 291 |
| MS.gene47830.t1 | AT5G01520 | 71.512 | 172 | 49 | 0 | 6 | 177 | 1 | 172 | 2.80e-89 | 270 |
| MS.gene47830.t1 | AT5G58787 | 61.574 | 216 | 65 | 2 | 9 | 224 | 5 | 202 | 9.08e-87 | 265 |
| MS.gene47830.t1 | AT5G58787 | 58.000 | 200 | 66 | 2 | 25 | 224 | 2 | 183 | 1.85e-74 | 233 |
| MS.gene47830.t1 | AT1G24440 | 43.723 | 231 | 121 | 3 | 7 | 233 | 7 | 232 | 3.09e-61 | 200 |
| MS.gene47830.t1 | AT1G13195 | 43.182 | 220 | 120 | 2 | 10 | 224 | 16 | 235 | 2.50e-56 | 188 |
| MS.gene47830.t1 | AT1G24440 | 42.786 | 201 | 106 | 3 | 37 | 233 | 5 | 200 | 9.82e-51 | 172 |
| MS.gene47830.t1 | AT1G13195 | 42.268 | 194 | 107 | 2 | 36 | 224 | 4 | 197 | 2.02e-47 | 163 |
Find 109 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCTCTGTTGAAGATAAAA+AGG | 0.242812 | 4.3:+82926102 | MS.gene47830:CDS |
| AAAACTCCACGGAATGTTTC+AGG | 0.263425 | 4.3:-82925989 | None:intergenic |
| TTAAGACTGTCGCGGCAAAA+AGG | 0.278394 | 4.3:-82921187 | None:intergenic |
| CGGTCCACTTAAACATAAAA+AGG | 0.297815 | 4.3:-82919273 | None:intergenic |
| TGCAAATGGGAAAGCCAGTT+TGG | 0.304726 | 4.3:+82924372 | MS.gene47830:CDS |
| CAACCCACCTGTAGCTTTAT+CGG | 0.305466 | 4.3:-82924423 | None:intergenic |
| AGGGATGATTAAGGAATTAA+TGG | 0.307293 | 4.3:-82923520 | None:intergenic |
| CGAGTATCAGCTGTCAATTC+AGG | 0.312317 | 4.3:-82928370 | None:intergenic |
| TTCACCACCAGGGATGATTA+AGG | 0.317717 | 4.3:-82923529 | None:intergenic |
| GGCCCTACGTCAATAATTGC+TGG | 0.323344 | 4.3:-82926022 | None:intergenic |
| TCAACAAGGAGAATTTAAAA+AGG | 0.340781 | 4.3:+82921275 | MS.gene47830:CDS |
| CAACAGGGAGATATATGATT+TGG | 0.347157 | 4.3:+82921246 | MS.gene47830:CDS |
| ACACAAAGAATGGTAGCAAT+TGG | 0.367659 | 4.3:-82920229 | None:intergenic |
| TTAATGGTGAGAAGCTGTTC+TGG | 0.370042 | 4.3:-82923504 | None:intergenic |
| GCAAATGGGAAAGCCAGTTT+GGG | 0.378446 | 4.3:+82924373 | MS.gene47830:CDS |
| TTATCAGTTTCCGGCTTTGC+GGG | 0.378655 | 4.3:+82924343 | MS.gene47830:intron |
| GCATAGTTATTTCTTGAAGA+TGG | 0.389396 | 4.3:+82928485 | MS.gene47830:CDS |
| TTTGCGGGAGTTTGTGCAAA+TGG | 0.395917 | 4.3:+82924358 | MS.gene47830:CDS |
| GCCAGTCTAAAGGAGTTCTA+TGG | 0.396778 | 4.3:+82919616 | MS.gene47830:CDS |
| CCTGCACAGGTTCCCCAAAC+TGG | 0.397058 | 4.3:-82924386 | None:intergenic |
| TGTTTCAGGACCACCTTCCT+TGG | 0.406689 | 4.3:-82925975 | None:intergenic |
| TCAGCTAGGACTTGAACTTC+TGG | 0.407051 | 4.3:-82926043 | None:intergenic |
| TTTGGATCTACATGAGCAAC+AGG | 0.407562 | 4.3:+82921230 | MS.gene47830:CDS |
| TGCCATCTTGCCGGAGCCTT+AGG | 0.410296 | 4.3:+82919298 | MS.gene47830:CDS |
| ACTGTGCACAGGAATTTCTT+TGG | 0.415918 | 4.3:+82924800 | MS.gene47830:CDS |
| CAGGAATTTCTTTGGCAGCC+AGG | 0.427750 | 4.3:+82924808 | MS.gene47830:CDS |
| TTATTTGTACTCACTTCTGC+TGG | 0.435763 | 4.3:-82928546 | None:intergenic |
| AAAAGGAGAAATTGAGCAGC+TGG | 0.436186 | 4.3:-82919256 | None:intergenic |
| TTTATCAGTTTCCGGCTTTG+CGG | 0.436334 | 4.3:+82924342 | MS.gene47830:intron |
| GAGTAAACTCTGGTGACCTT+TGG | 0.439077 | 4.3:+82921212 | MS.gene47830:CDS |
| TCTAAAGATGTGATTGGAAA+AGG | 0.441855 | 4.3:+82920129 | MS.gene47830:CDS |
| TACAAGTCTAAAGATGTGAT+TGG | 0.446149 | 4.3:+82920123 | MS.gene47830:CDS |
| CATAGTTATTTCTTGAAGAT+GGG | 0.447901 | 4.3:+82928486 | MS.gene47830:CDS |
| CCAGTTTGGGGAACCTGTGC+AGG | 0.461068 | 4.3:+82924386 | MS.gene47830:CDS |
| TTAAGAAGATTGGGTGTGAA+AGG | 0.461216 | 4.3:+82923465 | MS.gene47830:CDS |
| AGAGATGCGCAAGTCTTTCA+AGG | 0.466109 | 4.3:+82917928 | MS.gene47830:CDS |
| AGAAGAATGTCCGATTTGTA+TGG | 0.466227 | 4.3:+82920182 | MS.gene47830:CDS |
| TGGTGGTGAAAGCACCACTA+TGG | 0.467220 | 4.3:+82923542 | MS.gene47830:CDS |
| TGCACAAACTCCCGCAAAGC+CGG | 0.472068 | 4.3:-82924353 | None:intergenic |
| CACAAAGAATGGTAGCAATT+GGG | 0.472795 | 4.3:-82920228 | None:intergenic |
| TTGTTCATCTCCATACAAAT+CGG | 0.473398 | 4.3:-82920192 | None:intergenic |
| GCCCTACGTCAATAATTGCT+GGG | 0.475950 | 4.3:-82926021 | None:intergenic |
| CGGGATCCATCAGTTTCACT+TGG | 0.482023 | 4.3:-82919208 | None:intergenic |
| TTGCGGGAGTTTGTGCAAAT+GGG | 0.487279 | 4.3:+82924359 | MS.gene47830:CDS |
| TCTCTGAAGTTGTAATAAAG+AGG | 0.488990 | 4.3:-82920049 | None:intergenic |
| TCAGATTCAAAGCTTTGAAA+CGG | 0.493128 | 4.3:+82925928 | MS.gene47830:intron |
| ACCATAGAACTCCTTTAGAC+TGG | 0.496505 | 4.3:-82919617 | None:intergenic |
| CCTTCCTTGGAGACGAGCTC+AGG | 0.500108 | 4.3:-82925962 | None:intergenic |
| TGGACCGATTGCCATCTTGC+CGG | 0.503770 | 4.3:+82919289 | MS.gene47830:CDS |
| AGCATCTCATACACAAAGAA+TGG | 0.504570 | 4.3:-82920239 | None:intergenic |
| ACTTAGAGTTCTTGTATACA+AGG | 0.506880 | 4.3:+82919324 | MS.gene47830:CDS |
| TTCCTGGCCGATAAAGCTAC+AGG | 0.513201 | 4.3:+82924416 | MS.gene47830:CDS |
| ATTAATTCCTTAATCATCCC+TGG | 0.517436 | 4.3:+82923522 | MS.gene47830:CDS |
| GGCTCCGGCAAGATGGCAAT+CGG | 0.517599 | 4.3:-82919293 | None:intergenic |
| CACCTGTAGCTTTATCGGCC+AGG | 0.518373 | 4.3:-82924418 | None:intergenic |
| AGATAATCTCATTTGAAAGC+GGG | 0.528062 | 4.3:-82919227 | None:intergenic |
| GCTACTCGAGGCCTCTTCTC+CGG | 0.529040 | 4.3:-82928517 | None:intergenic |
| TTGAAGATGGGAAATGTGAC+CGG | 0.530497 | 4.3:+82928498 | MS.gene47830:CDS |
| TCTAAGTAATCCTAAGGCTC+CGG | 0.534273 | 4.3:-82919308 | None:intergenic |
| TGAAAGAAAAGCCAGTCTAA+AGG | 0.537095 | 4.3:+82919606 | MS.gene47830:CDS |
| ATAGTGGTGCTTTCACCACC+AGG | 0.540919 | 4.3:-82923540 | None:intergenic |
| TTCAGCGAGTTTAGCCATAG+TGG | 0.547805 | 4.3:-82923556 | None:intergenic |
| ATCCTAAGGCTCCGGCAAGA+TGG | 0.548336 | 4.3:-82919300 | None:intergenic |
| GTTATAGTTGCTGTGCGACA+AGG | 0.550991 | 4.3:+82928322 | MS.gene47830:CDS |
| TGTTGTTATTATACTCGAGT+GGG | 0.551275 | 4.3:-82923230 | None:intergenic |
| CTCTGAAGTTGTAATAAAGA+GGG | 0.554247 | 4.3:-82920048 | None:intergenic |
| TTGTTGCAGACATTTGAGGA+TGG | 0.555325 | 4.3:+82919562 | MS.gene47830:intron |
| TGTTGCAGACATTTGAGGAT+GGG | 0.557220 | 4.3:+82919563 | MS.gene47830:intron |
| GTTCAATACACATTGCAGCT+TGG | 0.560056 | 4.3:-82928900 | None:intergenic |
| CAGGAAAATTAGTCCTGCAC+AGG | 0.560529 | 4.3:-82924399 | None:intergenic |
| GATTATCCAAGTGAAACTGA+TGG | 0.565875 | 4.3:+82919202 | MS.gene47830:CDS |
| AAGAACTCTAAGTAATCCTA+AGG | 0.569846 | 4.3:-82919314 | None:intergenic |
| CCTGAGCTCGTCTCCAAGGA+AGG | 0.574869 | 4.3:+82925962 | MS.gene47830:CDS |
| GGGAAATGTGACCGGAGAAG+AGG | 0.575399 | 4.3:+82928506 | MS.gene47830:CDS |
| GACTTGATTGCACTGTGCAC+AGG | 0.576833 | 4.3:+82924789 | MS.gene47830:CDS |
| CCCCAGCAATTATTGACGTA+GGG | 0.577921 | 4.3:+82926020 | MS.gene47830:CDS |
| GGAGTTGTTGCAGACATTTG+AGG | 0.583221 | 4.3:+82919558 | MS.gene47830:intron |
| ACTGGTGGACAAGAACTTGT+TGG | 0.583767 | 4.3:+82924764 | MS.gene47830:CDS |
| GGTGGACAAGAACTTGTTGG+TGG | 0.593412 | 4.3:+82924767 | MS.gene47830:CDS |
| ATGATTTCAGGACAGAAGAC+TGG | 0.594853 | 4.3:+82924746 | MS.gene47830:intron |
| TGTTGCTCATGTAGATCCAA+AGG | 0.596314 | 4.3:-82921228 | None:intergenic |
| TGTGCGACAAGGGAACATAC+TGG | 0.599628 | 4.3:+82928333 | MS.gene47830:CDS |
| AGTACCTGAGCTCGTCTCCA+AGG | 0.600137 | 4.3:+82925958 | MS.gene47830:CDS |
| AGTCTTAAAAGAGTAAACTC+TGG | 0.601450 | 4.3:+82921202 | MS.gene47830:CDS |
| GCCACTCTGACAGAAGGTAC+AGG | 0.603479 | 4.3:-82926070 | None:intergenic |
| TTGTTGTTATTATACTCGAG+TGG | 0.605693 | 4.3:-82923231 | None:intergenic |
| GTATGAGATGCTATAATGAC+TGG | 0.607525 | 4.3:+82920250 | MS.gene47830:CDS |
| AAGATAATCTCATTTGAAAG+CGG | 0.612280 | 4.3:-82919228 | None:intergenic |
| TTATAGTTGCTGTGCGACAA+GGG | 0.613272 | 4.3:+82928323 | MS.gene47830:CDS |
| AAAGGAGAAATTGAGCAGCT+GGG | 0.621447 | 4.3:-82919255 | None:intergenic |
| AAGGTACAGGATAATCAGCT+AGG | 0.622940 | 4.3:-82926057 | None:intergenic |
| TGCTGGAACAACGCTACTCG+AGG | 0.626381 | 4.3:-82928529 | None:intergenic |
| GAATCACTGATGTAGAAGAG+AGG | 0.635245 | 4.3:+82920073 | MS.gene47830:CDS |
| ACTCGCTGAATATTTCAACC+TGG | 0.638716 | 4.3:+82923569 | MS.gene47830:CDS |
| CCCTACGTCAATAATTGCTG+GGG | 0.645849 | 4.3:-82926020 | None:intergenic |
| AATTGACAGCTGATACTCGA+TGG | 0.647353 | 4.3:+82928374 | MS.gene47830:CDS |
| GAACTCGCCACTCTGACAGA+AGG | 0.651056 | 4.3:-82926076 | None:intergenic |
| GAGCTCGTCTCCAAGGAAGG+TGG | 0.657634 | 4.3:+82925965 | MS.gene47830:CDS |
| TCCTGTACCTTCTGTCAGAG+TGG | 0.657983 | 4.3:+82926069 | MS.gene47830:CDS |
| GCCCCAGCAATTATTGACGT+AGG | 0.663150 | 4.3:+82926019 | MS.gene47830:CDS |
| ATTTCAGGACAGAAGACTGG+TGG | 0.674164 | 4.3:+82924749 | MS.gene47830:intron |
| GGTGGTCCTGAAACATTCCG+TGG | 0.679473 | 4.3:+82925983 | MS.gene47830:CDS |
| TCTTTATTACAACTTCAGAG+AGG | 0.688149 | 4.3:+82920051 | MS.gene47830:CDS |
| TTGTATGGAGATGAACAACA+AGG | 0.706093 | 4.3:+82920197 | MS.gene47830:CDS |
| AATTCCTTAATCATCCCTGG+TGG | 0.708340 | 4.3:+82923525 | MS.gene47830:CDS |
| TTGGATCTACATGAGCAACA+GGG | 0.717293 | 4.3:+82921231 | MS.gene47830:CDS |
| TGATTTGGAATCAATCAACA+AGG | 0.718390 | 4.3:+82921261 | MS.gene47830:CDS |
| TAGTGGTGCTTTCACCACCA+GGG | 0.725360 | 4.3:-82923539 | None:intergenic |
| CAAATGGGAAAGCCAGTTTG+GGG | 0.735805 | 4.3:+82924374 | MS.gene47830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 82917917 | 82928920 | 82917917 | ID=MS.gene47830 |
| chr4.3 | mRNA | 82917917 | 82928920 | 82917917 | ID=MS.gene47830.t1;Parent=MS.gene47830 |
| chr4.3 | exon | 82917917 | 82917996 | 82917917 | ID=MS.gene47830.t1.exon1;Parent=MS.gene47830.t1 |
| chr4.3 | CDS | 82917917 | 82917996 | 82917917 | ID=cds.MS.gene47830.t1;Parent=MS.gene47830.t1 |
| chr4.3 | exon | 82919195 | 82919345 | 82919195 | ID=MS.gene47830.t1.exon2;Parent=MS.gene47830.t1 |
| chr4.3 | CDS | 82919195 | 82919345 | 82919195 | ID=cds.MS.gene47830.t1;Parent=MS.gene47830.t1 |
| chr4.3 | exon | 82919571 | 82919637 | 82919571 | ID=MS.gene47830.t1.exon3;Parent=MS.gene47830.t1 |
| chr4.3 | CDS | 82919571 | 82919637 | 82919571 | ID=cds.MS.gene47830.t1;Parent=MS.gene47830.t1 |
| chr4.3 | exon | 82920037 | 82920271 | 82920037 | ID=MS.gene47830.t1.exon4;Parent=MS.gene47830.t1 |
| chr4.3 | CDS | 82920037 | 82920271 | 82920037 | ID=cds.MS.gene47830.t1;Parent=MS.gene47830.t1 |
| chr4.3 | exon | 82921165 | 82921296 | 82921165 | ID=MS.gene47830.t1.exon5;Parent=MS.gene47830.t1 |
| chr4.3 | CDS | 82921165 | 82921296 | 82921165 | ID=cds.MS.gene47830.t1;Parent=MS.gene47830.t1 |
| chr4.3 | exon | 82923174 | 82923238 | 82923174 | ID=MS.gene47830.t1.exon6;Parent=MS.gene47830.t1 |
| chr4.3 | CDS | 82923174 | 82923238 | 82923174 | ID=cds.MS.gene47830.t1;Parent=MS.gene47830.t1 |
| chr4.3 | exon | 82923463 | 82923590 | 82923463 | ID=MS.gene47830.t1.exon7;Parent=MS.gene47830.t1 |
| chr4.3 | CDS | 82923463 | 82923590 | 82923463 | ID=cds.MS.gene47830.t1;Parent=MS.gene47830.t1 |
| chr4.3 | exon | 82924350 | 82924437 | 82924350 | ID=MS.gene47830.t1.exon8;Parent=MS.gene47830.t1 |
| chr4.3 | CDS | 82924350 | 82924437 | 82924350 | ID=cds.MS.gene47830.t1;Parent=MS.gene47830.t1 |
| chr4.3 | exon | 82924756 | 82924829 | 82924756 | ID=MS.gene47830.t1.exon9;Parent=MS.gene47830.t1 |
| chr4.3 | CDS | 82924756 | 82924829 | 82924756 | ID=cds.MS.gene47830.t1;Parent=MS.gene47830.t1 |
| chr4.3 | exon | 82925932 | 82926123 | 82925932 | ID=MS.gene47830.t1.exon10;Parent=MS.gene47830.t1 |
| chr4.3 | CDS | 82925932 | 82926123 | 82925932 | ID=cds.MS.gene47830.t1;Parent=MS.gene47830.t1 |
| chr4.3 | exon | 82928298 | 82928395 | 82928298 | ID=MS.gene47830.t1.exon11;Parent=MS.gene47830.t1 |
| chr4.3 | CDS | 82928298 | 82928395 | 82928298 | ID=cds.MS.gene47830.t1;Parent=MS.gene47830.t1 |
| chr4.3 | exon | 82928485 | 82928554 | 82928485 | ID=MS.gene47830.t1.exon12;Parent=MS.gene47830.t1 |
| chr4.3 | CDS | 82928485 | 82928554 | 82928485 | ID=cds.MS.gene47830.t1;Parent=MS.gene47830.t1 |
| chr4.3 | exon | 82928897 | 82928920 | 82928897 | ID=MS.gene47830.t1.exon13;Parent=MS.gene47830.t1 |
| chr4.3 | CDS | 82928897 | 82928920 | 82928897 | ID=cds.MS.gene47830.t1;Parent=MS.gene47830.t1 |
| Gene Sequence |
| Protein sequence |
