Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48442.t1 | XP_003602953.1 | 88.6 | 273 | 16 | 1 | 1 | 273 | 1 | 258 | 1.90E-127 | 465.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48442.t1 | Q9SE96 | 73.1 | 234 | 55 | 2 | 39 | 272 | 31 | 256 | 5.8e-96 | 352.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48442.t1 | G7J579 | 88.6 | 273 | 16 | 1 | 1 | 273 | 1 | 258 | 1.4e-127 | 465.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049195 | MS.gene48442 | -0.826041 | 3.37E-54 | -1.69E-46 |
| MS.gene049297 | MS.gene48442 | -0.837112 | 6.30E-57 | -1.69E-46 |
| MS.gene04933 | MS.gene48442 | -0.81068 | 1.02E-50 | -1.69E-46 |
| MS.gene049378 | MS.gene48442 | -0.822942 | 1.81E-53 | -1.69E-46 |
| MS.gene049599 | MS.gene48442 | 0.822886 | 1.86E-53 | -1.69E-46 |
| MS.gene049758 | MS.gene48442 | -0.842728 | 2.17E-58 | -1.69E-46 |
| MS.gene050020 | MS.gene48442 | -0.802363 | 5.81E-49 | -1.69E-46 |
| MS.gene050226 | MS.gene48442 | -0.812982 | 3.22E-51 | -1.69E-46 |
| MS.gene050227 | MS.gene48442 | -0.832202 | 1.08E-55 | -1.69E-46 |
| MS.gene050228 | MS.gene48442 | -0.818517 | 1.88E-52 | -1.69E-46 |
| MS.gene050301 | MS.gene48442 | -0.80476 | 1.85E-49 | -1.69E-46 |
| MS.gene050319 | MS.gene48442 | 0.850272 | 1.89E-60 | -1.69E-46 |
| MS.gene050330 | MS.gene48442 | 0.836279 | 1.03E-56 | -1.69E-46 |
| MS.gene050442 | MS.gene48442 | -0.825481 | 4.58E-54 | -1.69E-46 |
| MS.gene050558 | MS.gene48442 | -0.839927 | 1.18E-57 | -1.69E-46 |
| MS.gene050623 | MS.gene48442 | 0.817847 | 2.67E-52 | -1.69E-46 |
| MS.gene050762 | MS.gene48442 | -0.814841 | 1.25E-51 | -1.69E-46 |
| MS.gene050763 | MS.gene48442 | -0.815665 | 8.23E-52 | -1.69E-46 |
| MS.gene050787 | MS.gene48442 | -0.857397 | 1.68E-62 | -1.69E-46 |
| MS.gene050807 | MS.gene48442 | -0.82752 | 1.49E-54 | -1.69E-46 |
| MS.gene050815 | MS.gene48442 | -0.806815 | 6.85E-50 | -1.69E-46 |
| MS.gene05119 | MS.gene48442 | 0.863222 | 2.90E-64 | -1.69E-46 |
| MS.gene051265 | MS.gene48442 | -0.822577 | 2.20E-53 | -1.69E-46 |
| MS.gene051662 | MS.gene48442 | -0.832517 | 9.03E-56 | -1.69E-46 |
| MS.gene051663 | MS.gene48442 | -0.827765 | 1.31E-54 | -1.69E-46 |
| MS.gene051860 | MS.gene48442 | -0.84205 | 3.28E-58 | -1.69E-46 |
| MS.gene052207 | MS.gene48442 | -0.815133 | 1.08E-51 | -1.69E-46 |
| MS.gene052564 | MS.gene48442 | -0.810143 | 1.33E-50 | -1.69E-46 |
| MS.gene052565 | MS.gene48442 | -0.812079 | 5.08E-51 | -1.69E-46 |
| MS.gene052665 | MS.gene48442 | -0.81966 | 1.03E-52 | -1.69E-46 |
| MS.gene052673 | MS.gene48442 | 0.833216 | 6.06E-56 | -1.69E-46 |
| MS.gene053054 | MS.gene48442 | 0.810738 | 9.93E-51 | -1.69E-46 |
| MS.gene053085 | MS.gene48442 | -0.80287 | 4.57E-49 | -1.69E-46 |
| MS.gene053630 | MS.gene48442 | -0.83975 | 1.31E-57 | -1.69E-46 |
| MS.gene053836 | MS.gene48442 | -0.879645 | 1.05E-69 | -1.69E-46 |
| MS.gene054011 | MS.gene48442 | -0.808388 | 3.17E-50 | -1.69E-46 |
| MS.gene054379 | MS.gene48442 | -0.820437 | 6.86E-53 | -1.69E-46 |
| MS.gene054468 | MS.gene48442 | -0.808211 | 3.46E-50 | -1.69E-46 |
| MS.gene054473 | MS.gene48442 | -0.861239 | 1.18E-63 | -1.69E-46 |
| MS.gene054918 | MS.gene48442 | -0.800801 | 1.22E-48 | -1.69E-46 |
| MS.gene054930 | MS.gene48442 | -0.818745 | 1.67E-52 | -1.69E-46 |
| MS.gene054942 | MS.gene48442 | -0.845091 | 5.04E-59 | -1.69E-46 |
| MS.gene054983 | MS.gene48442 | -0.803068 | 4.16E-49 | -1.69E-46 |
| MS.gene055277 | MS.gene48442 | -0.818214 | 2.20E-52 | -1.69E-46 |
| MS.gene055356 | MS.gene48442 | -0.816379 | 5.70E-52 | -1.69E-46 |
| MS.gene055358 | MS.gene48442 | -0.832534 | 8.95E-56 | -1.69E-46 |
| MS.gene055422 | MS.gene48442 | -0.838067 | 3.58E-57 | -1.69E-46 |
| MS.gene055428 | MS.gene48442 | -0.840102 | 1.06E-57 | -1.69E-46 |
| MS.gene055604 | MS.gene48442 | -0.813272 | 2.78E-51 | -1.69E-46 |
| MS.gene055816 | MS.gene48442 | 0.803958 | 2.72E-49 | -1.69E-46 |
| MS.gene056069 | MS.gene48442 | 0.883581 | 3.98E-71 | -1.69E-46 |
| MS.gene056875 | MS.gene48442 | -0.824603 | 7.38E-54 | -1.69E-46 |
| MS.gene057121 | MS.gene48442 | -0.806149 | 9.46E-50 | -1.69E-46 |
| MS.gene057245 | MS.gene48442 | -0.841522 | 4.51E-58 | -1.69E-46 |
| MS.gene057260 | MS.gene48442 | -0.809932 | 1.48E-50 | -1.69E-46 |
| MS.gene057439 | MS.gene48442 | -0.828014 | 1.14E-54 | -1.69E-46 |
| MS.gene057469 | MS.gene48442 | -0.835288 | 1.83E-56 | -1.69E-46 |
| MS.gene058168 | MS.gene48442 | -0.81252 | 4.07E-51 | -1.69E-46 |
| MS.gene058636 | MS.gene48442 | -0.800512 | 1.39E-48 | -1.69E-46 |
| MS.gene058661 | MS.gene48442 | 0.800593 | 1.34E-48 | -1.69E-46 |
| MS.gene059033 | MS.gene48442 | 0.843999 | 9.92E-59 | -1.69E-46 |
| MS.gene05984 | MS.gene48442 | -0.800642 | 1.31E-48 | -1.69E-46 |
| MS.gene060137 | MS.gene48442 | 0.87188 | 4.88E-67 | -1.69E-46 |
| MS.gene060634 | MS.gene48442 | 0.829617 | 4.66E-55 | -1.69E-46 |
| MS.gene061040 | MS.gene48442 | 0.834754 | 2.50E-56 | -1.69E-46 |
| MS.gene061049 | MS.gene48442 | -0.824492 | 7.84E-54 | -1.69E-46 |
| MS.gene061114 | MS.gene48442 | 0.821613 | 3.68E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48442.t1 | MTR_3g100750 | 93.773 | 273 | 2 | 1 | 1 | 273 | 1 | 258 | 0.0 | 521 |
| MS.gene48442.t1 | MTR_8g069110 | 71.667 | 180 | 51 | 0 | 93 | 272 | 90 | 269 | 2.05e-98 | 290 |
| MS.gene48442.t1 | MTR_7g083570 | 47.475 | 198 | 94 | 3 | 74 | 270 | 86 | 274 | 5.13e-64 | 202 |
| MS.gene48442.t1 | MTR_2g076350 | 47.030 | 202 | 102 | 3 | 75 | 271 | 25 | 226 | 3.86e-61 | 193 |
| MS.gene48442.t1 | MTR_1g033750 | 39.623 | 159 | 95 | 1 | 113 | 270 | 62 | 220 | 1.50e-43 | 147 |
| MS.gene48442.t1 | MTR_6g077990 | 38.994 | 159 | 96 | 1 | 113 | 270 | 37 | 195 | 2.43e-42 | 144 |
| MS.gene48442.t1 | MTR_6g077990 | 38.994 | 159 | 96 | 1 | 113 | 270 | 38 | 196 | 2.52e-42 | 144 |
| MS.gene48442.t1 | MTR_6g077990 | 40.411 | 146 | 86 | 1 | 126 | 270 | 8 | 153 | 2.12e-40 | 137 |
| MS.gene48442.t1 | MTR_8g100065 | 37.654 | 162 | 97 | 2 | 112 | 270 | 22 | 182 | 3.08e-40 | 138 |
| MS.gene48442.t1 | MTR_1g114640 | 36.413 | 184 | 107 | 3 | 89 | 270 | 43 | 218 | 4.36e-40 | 139 |
| MS.gene48442.t1 | MTR_8g100065 | 37.654 | 162 | 97 | 2 | 112 | 270 | 44 | 204 | 7.15e-40 | 138 |
| MS.gene48442.t1 | MTR_1g114690 | 35.849 | 159 | 101 | 1 | 113 | 270 | 57 | 215 | 5.97e-37 | 130 |
| MS.gene48442.t1 | MTR_1g114750 | 35.625 | 160 | 102 | 1 | 112 | 270 | 59 | 218 | 1.21e-36 | 130 |
| MS.gene48442.t1 | MTR_1g114690 | 35.220 | 159 | 102 | 1 | 113 | 270 | 57 | 215 | 1.54e-36 | 129 |
| MS.gene48442.t1 | MTR_1g115130 | 36.000 | 150 | 94 | 2 | 126 | 273 | 46 | 195 | 1.66e-31 | 116 |
| MS.gene48442.t1 | MTR_1g114690 | 29.534 | 193 | 101 | 2 | 113 | 270 | 57 | 249 | 6.34e-30 | 113 |
| MS.gene48442.t1 | MTR_1g114680 | 43.396 | 106 | 59 | 1 | 166 | 270 | 55 | 160 | 2.57e-25 | 99.4 |
| MS.gene48442.t1 | MTR_6g077990 | 39.815 | 108 | 64 | 1 | 113 | 219 | 37 | 144 | 1.54e-24 | 96.7 |
| MS.gene48442.t1 | MTR_8g100065 | 37.736 | 106 | 63 | 1 | 112 | 214 | 22 | 127 | 1.71e-22 | 90.5 |
| MS.gene48442.t1 | MTR_8g100065 | 37.736 | 106 | 63 | 1 | 112 | 214 | 44 | 149 | 2.26e-22 | 90.9 |
| MS.gene48442.t1 | MTR_1g114640 | 34.074 | 135 | 79 | 3 | 89 | 221 | 43 | 169 | 1.78e-21 | 89.0 |
| MS.gene48442.t1 | MTR_1g114690 | 33.929 | 112 | 73 | 1 | 113 | 223 | 57 | 168 | 3.12e-18 | 81.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48442.t1 | AT1G28200 | 71.605 | 243 | 61 | 2 | 31 | 273 | 23 | 257 | 9.87e-123 | 350 |
| MS.gene48442.t1 | AT1G28200 | 71.605 | 243 | 61 | 2 | 31 | 273 | 23 | 257 | 9.87e-123 | 350 |
| MS.gene48442.t1 | AT2G22475 | 72.727 | 198 | 53 | 1 | 76 | 272 | 96 | 293 | 7.24e-110 | 320 |
| MS.gene48442.t1 | AT2G22475 | 72.603 | 146 | 39 | 1 | 76 | 220 | 96 | 241 | 1.29e-76 | 233 |
| MS.gene48442.t1 | AT4G40100 | 57.789 | 199 | 47 | 4 | 76 | 272 | 55 | 218 | 4.82e-73 | 223 |
| MS.gene48442.t1 | AT5G13200 | 40.892 | 269 | 138 | 6 | 3 | 266 | 4 | 256 | 2.14e-61 | 195 |
| MS.gene48442.t1 | AT4G01600 | 42.211 | 199 | 108 | 3 | 76 | 270 | 29 | 224 | 1.23e-54 | 176 |
| MS.gene48442.t1 | AT4G01600 | 42.135 | 178 | 101 | 1 | 95 | 270 | 8 | 185 | 8.65e-52 | 168 |
| MS.gene48442.t1 | AT4G01600 | 41.206 | 199 | 105 | 4 | 76 | 270 | 29 | 219 | 1.27e-50 | 166 |
| MS.gene48442.t1 | AT5G23350 | 34.259 | 216 | 133 | 4 | 60 | 270 | 2 | 213 | 4.77e-40 | 139 |
| MS.gene48442.t1 | AT5G13200 | 38.636 | 220 | 114 | 6 | 3 | 217 | 4 | 207 | 1.17e-39 | 137 |
| MS.gene48442.t1 | AT5G23360 | 36.875 | 160 | 98 | 2 | 113 | 270 | 47 | 205 | 1.26e-38 | 134 |
| MS.gene48442.t1 | AT5G23370 | 33.333 | 219 | 131 | 6 | 60 | 270 | 2 | 213 | 3.59e-38 | 134 |
| MS.gene48442.t1 | AT5G08350 | 33.831 | 201 | 116 | 4 | 72 | 270 | 27 | 212 | 4.06e-38 | 134 |
Find 78 sgRNAs with CRISPR-Local
Find 308 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGTTGACAATCATGAATTT+TGG | 0.145817 | 3.1:-80096821 | MS.gene48442:CDS |
| TGAAAGATGTTCTTGGAAAA+TGG | 0.239709 | 3.1:-80101087 | MS.gene48442:CDS |
| AGCAAGATCTTCAGCCTTCT+TGG | 0.287689 | 3.1:+80101042 | None:intergenic |
| GAATCAGAGTCTTGGGGTTT+GGG | 0.291767 | 3.1:+80101390 | None:intergenic |
| ACGTCGTTTGGGTCGAGTTT+AGG | 0.310396 | 3.1:+80101336 | None:intergenic |
| TTTAGGATACGGAGCGTAAT+CGG | 0.313258 | 3.1:+80101353 | None:intergenic |
| GGTGGTGGTGCGACGTCGTT+TGG | 0.326020 | 3.1:+80101324 | None:intergenic |
| AGAATCAGAGTCTTGGGGTT+TGG | 0.350975 | 3.1:+80101389 | None:intergenic |
| GATTCGGTGAAAGATGTTCT+TGG | 0.357881 | 3.1:-80101094 | MS.gene48442:CDS |
| TGCTACCTCTCCACCTCTGC+TGG | 0.362383 | 3.1:-80099975 | MS.gene48442:CDS |
| GACTCAATGGAGCTATTATA+AGG | 0.381490 | 3.1:-80099868 | MS.gene48442:intron |
| GCAGAAGTGGGTTCGGGAAC+TGG | 0.387440 | 3.1:+80101219 | None:intergenic |
| TTAGGATACGGAGCGTAATC+GGG | 0.390438 | 3.1:+80101354 | None:intergenic |
| GGGTTGGCTTTGCTTGTGGA+TGG | 0.392668 | 3.1:+80096870 | None:intergenic |
| CACCTCTGCTGGACCTGTCA+TGG | 0.396719 | 3.1:-80099964 | MS.gene48442:CDS |
| GAAAGATGTTCTTGGAAAAT+GGG | 0.402168 | 3.1:-80101086 | MS.gene48442:CDS |
| AGAGTCTTGGGGTTTGGGAT+TGG | 0.404551 | 3.1:+80101395 | None:intergenic |
| TGCTCAGGGAACAAAAGTTC+TGG | 0.404565 | 3.1:-80100075 | MS.gene48442:CDS |
| CTCTTAGCAGAAGTGGGTTC+GGG | 0.406503 | 3.1:+80101213 | None:intergenic |
| AGAGTGAGAATCAGAGTCTT+GGG | 0.416127 | 3.1:+80101383 | None:intergenic |
| ACTCTTAGCAGAAGTGGGTT+CGG | 0.417854 | 3.1:+80101212 | None:intergenic |
| TTGTGTTTGTGTTGGTGGGT+TGG | 0.423984 | 3.1:+80101421 | None:intergenic |
| ATTGAGTCTGGTCACCAGTC+TGG | 0.437061 | 3.1:+80099883 | None:intergenic |
| AAGAAGGCTGAAGATCTTGC+TGG | 0.439141 | 3.1:-80101040 | MS.gene48442:CDS |
| GGTGTTTGTGTTTGTGTTGG+TGG | 0.440766 | 3.1:+80101416 | None:intergenic |
| GGTTGGCTTTGCTTGTGGAT+GGG | 0.441303 | 3.1:+80096871 | None:intergenic |
| TTCCATAAAACAGTGAAAAC+AGG | 0.443896 | 3.1:-80100131 | MS.gene48442:intron |
| GTGTTTGTGTTTGTGTTGGT+GGG | 0.451705 | 3.1:+80101417 | None:intergenic |
| TGCTGTGGGAAGAATTGCTC+AGG | 0.454151 | 3.1:-80100090 | MS.gene48442:CDS |
| GGGCATGGTGGTGGCAGCAT+CGG | 0.455840 | 3.1:+80101272 | None:intergenic |
| TATAATAGCTCCATTGAGTC+TGG | 0.472016 | 3.1:+80099871 | None:intergenic |
| GTGGGTTCGGGAACTGGTGC+AGG | 0.472656 | 3.1:+80101225 | None:intergenic |
| GGGATTAGATTCGGCGGGCA+TGG | 0.481538 | 3.1:+80101257 | None:intergenic |
| ACCTCTGCTGGACCTGTCAT+GGG | 0.481952 | 3.1:-80099963 | MS.gene48442:CDS |
| GTGTTGGTGGGTTGGACATG+AGG | 0.489459 | 3.1:+80101429 | None:intergenic |
| ATTGGTGTTTGTGTTTGTGT+TGG | 0.490015 | 3.1:+80101413 | None:intergenic |
| AGATTCGGCGGGCATGGTGG+TGG | 0.492264 | 3.1:+80101263 | None:intergenic |
| CATGGTGGTGGCAGCATCGG+TGG | 0.493757 | 3.1:+80101275 | None:intergenic |
| GCGCGAGATTCAGTAGCAAC+AGG | 0.494862 | 3.1:+80101297 | None:intergenic |
| AGTAGGGTTGGCTTTGCTTG+TGG | 0.497012 | 3.1:+80096866 | None:intergenic |
| GTGGTGGTGCGACGTCGTTT+GGG | 0.498600 | 3.1:+80101325 | None:intergenic |
| GAGAGTGAGAATCAGAGTCT+TGG | 0.511071 | 3.1:+80101382 | None:intergenic |
| AACTGGTGCAGGAGAGACAT+AGG | 0.514578 | 3.1:+80101236 | None:intergenic |
| TCAGTAGCAACAGGTGGTGG+TGG | 0.526626 | 3.1:+80101306 | None:intergenic |
| GAAATAACTCTTAGCAGAAG+TGG | 0.530714 | 3.1:+80101206 | None:intergenic |
| GTAGCAACAGGTGGTGGTGG+TGG | 0.530974 | 3.1:+80101309 | None:intergenic |
| GATTCAGTAGCAACAGGTGG+TGG | 0.532264 | 3.1:+80101303 | None:intergenic |
| AGACTGGTGACCAGACTCAA+TGG | 0.534492 | 3.1:-80099881 | MS.gene48442:CDS |
| AGAGACATAGGGATTAGATT+CGG | 0.541864 | 3.1:+80101248 | None:intergenic |
| TTTGGGTCGAGTTTAGGATA+CGG | 0.542371 | 3.1:+80101342 | None:intergenic |
| CATGACAGGTCCAGCAGAGG+TGG | 0.545232 | 3.1:+80099965 | None:intergenic |
| ACTGCTCGCAGCTGATGCAA+TGG | 0.553859 | 3.1:+80096897 | None:intergenic |
| TCACCAGTCTGGTAAGAAAG+TGG | 0.556592 | 3.1:+80099894 | None:intergenic |
| TGGACATGAGGTTGAACTTG+AGG | 0.563584 | 3.1:+80101441 | None:intergenic |
| AACCCACTTTCTTACCAGAC+TGG | 0.563921 | 3.1:-80099897 | MS.gene48442:CDS |
| GTCAACAATATGAGTAGTAG+TGG | 0.564010 | 3.1:-80101474 | None:intergenic |
| CCAAAATTCATGATTGTCAA+CGG | 0.566250 | 3.1:+80096821 | None:intergenic |
| ACATAGGGATTAGATTCGGC+GGG | 0.570583 | 3.1:+80101252 | None:intergenic |
| TAGGATACGGAGCGTAATCG+GGG | 0.571711 | 3.1:+80101355 | None:intergenic |
| ACAGCAGCATCAGCAAAACT+AGG | 0.577655 | 3.1:+80100107 | None:intergenic |
| AAATACAAGACTCCCATGAC+AGG | 0.580237 | 3.1:+80099951 | None:intergenic |
| GACATAGGGATTAGATTCGG+CGG | 0.580305 | 3.1:+80101251 | None:intergenic |
| CAGGTCCAGCAGAGGTGGAG+AGG | 0.582547 | 3.1:+80099970 | None:intergenic |
| ATTAGATTCGGCGGGCATGG+TGG | 0.585883 | 3.1:+80101260 | None:intergenic |
| AGCTGCTGAAGCTACCAAGA+AGG | 0.592291 | 3.1:-80101056 | MS.gene48442:CDS |
| AAAGATGTTCTTGGAAAATG+GGG | 0.592681 | 3.1:-80101085 | MS.gene48442:CDS |
| AAATAACTCTTAGCAGAAGT+GGG | 0.592905 | 3.1:+80101207 | None:intergenic |
| CACCAGTCTGGTAAGAAAGT+GGG | 0.607437 | 3.1:+80099895 | None:intergenic |
| GGAACAAAAGTTCTGGCAGA+AGG | 0.613260 | 3.1:-80100068 | MS.gene48442:CDS |
| ACTGGTGCAGGAGAGACATA+GGG | 0.634538 | 3.1:+80101237 | None:intergenic |
| TCCCATGACAGGTCCAGCAG+AGG | 0.644056 | 3.1:+80099962 | None:intergenic |
| GAGTGAGAATCAGAGTCTTG+GGG | 0.647869 | 3.1:+80101384 | None:intergenic |
| ACAAAAGTTCTGGCAGAAGG+TGG | 0.648034 | 3.1:-80100065 | MS.gene48442:CDS |
| AAGATCTTGCTGGAAACATG+TGG | 0.657196 | 3.1:-80101030 | MS.gene48442:CDS |
| AGGATACGGAGCGTAATCGG+GGG | 0.674476 | 3.1:+80101356 | None:intergenic |
| CGAGATTCAGTAGCAACAGG+TGG | 0.675679 | 3.1:+80101300 | None:intergenic |
| ACATGAGGTTGAACTTGAGG+AGG | 0.679456 | 3.1:+80101444 | None:intergenic |
| GCTGTGGGAAGAATTGCTCA+GGG | 0.687709 | 3.1:-80100089 | MS.gene48442:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATAATATATTAAATTTT+AGG | - | chr3.1:80100008-80100027 | MS.gene48442:CDS | 0.0% |
| !!! | AAATAATATATTAAATTTTA+GGG | - | chr3.1:80100009-80100028 | MS.gene48442:CDS | 0.0% |
| !!! | ATTTTAATTAATTTTATAGC+TGG | - | chr3.1:80097998-80098017 | MS.gene48442:intron | 10.0% |
| !!! | TACATATTTATTTTTTTTGA+AGG | - | chr3.1:80099015-80099034 | MS.gene48442:intron | 10.0% |
| !! | AACAAAAGGTTATAAAATTT+AGG | + | chr3.1:80099569-80099588 | None:intergenic | 15.0% |
| !! | ACAAAAGGTTATAAAATTTA+GGG | + | chr3.1:80099568-80099587 | None:intergenic | 15.0% |
| !! | ATTCATTATTTGAACAAAAT+GGG | - | chr3.1:80099224-80099243 | MS.gene48442:intron | 15.0% |
| !! | CTTAAATGAATTTGAATAAT+TGG | + | chr3.1:80097254-80097273 | None:intergenic | 15.0% |
| !! | GTAATCTATTAAAAATCATA+CGG | + | chr3.1:80101123-80101142 | None:intergenic | 15.0% |
| !! | TAATCTATTAAAAATCATAC+GGG | + | chr3.1:80101122-80101141 | None:intergenic | 15.0% |
| !!! | TATTCATAAAATTTTGCTAT+AGG | + | chr3.1:80098537-80098556 | None:intergenic | 15.0% |
| !!! | TTTAATTAACATGAGATTTT+TGG | - | chr3.1:80098711-80098730 | MS.gene48442:intron | 15.0% |
| !! | AATTAAAAAAATACAGAGGT+TGG | + | chr3.1:80099352-80099371 | None:intergenic | 20.0% |
| !! | AGATATATTGTATTGAGAAA+TGG | - | chr3.1:80100664-80100683 | MS.gene48442:intron | 20.0% |
| !! | ATAGAATATTGTATTGAGAA+AGG | - | chr3.1:80099954-80099973 | MS.gene48442:CDS | 20.0% |
| !! | ATTAGAATAGATTGAATGAA+GGG | - | chr3.1:80097754-80097773 | MS.gene48442:intron | 20.0% |
| !! | CAAGCAATTTATATTAAGAT+TGG | - | chr3.1:80099914-80099933 | MS.gene48442:CDS | 20.0% |
| !! | GATTCATTATTTGAACAAAA+TGG | - | chr3.1:80099223-80099242 | MS.gene48442:intron | 20.0% |
| !! | GCTATTCAATAAATATTTCT+TGG | - | chr3.1:80097273-80097292 | MS.gene48442:intron | 20.0% |
| !! | TAATCATCCAAAATAATTTC+AGG | + | chr3.1:80098756-80098775 | None:intergenic | 20.0% |
| !! | TAATTCCTCGAAAAAAATAT+TGG | + | chr3.1:80098997-80099016 | None:intergenic | 20.0% |
| !! | TAATTGGAAGTAAAAGAATT+AGG | + | chr3.1:80097238-80097257 | None:intergenic | 20.0% |
| !! | TATTAGAATAGATTGAATGA+AGG | - | chr3.1:80097753-80097772 | MS.gene48442:intron | 20.0% |
| !! | TCTTAAGTAATATCATTGTT+TGG | - | chr3.1:80098786-80098805 | MS.gene48442:intron | 20.0% |
| !! | TTGTTCTTTAATAACTGATT+TGG | - | chr3.1:80098409-80098428 | MS.gene48442:intron | 20.0% |
| !!! | AACCTCTGTATTTTTTTAAT+TGG | - | chr3.1:80099351-80099370 | MS.gene48442:intron | 20.0% |
| !!! | AATATATTAAATTTTAGGGG+TGG | - | chr3.1:80100013-80100032 | MS.gene48442:CDS | 20.0% |
| !!! | AATCATGAATTTTGGTTTAT+GGG | - | chr3.1:80101407-80101426 | MS.gene48442:CDS | 20.0% |
| !!! | ATAGATTTTAGATGTATCTA+GGG | - | chr3.1:80098958-80098977 | MS.gene48442:intron | 20.0% |
| !!! | ATCTGTATAAATTTTTCAGT+AGG | + | chr3.1:80101374-80101393 | None:intergenic | 20.0% |
| !!! | ATTAATTTTATAGCTGGAAA+TGG | - | chr3.1:80098004-80098023 | MS.gene48442:intron | 20.0% |
| !!! | GTCATATTTTTTCTATTGTT+TGG | - | chr3.1:80101254-80101273 | MS.gene48442:CDS | 20.0% |
| !!! | TAATCTCTACACTTTTTTAA+TGG | + | chr3.1:80097833-80097852 | None:intergenic | 20.0% |
| !!! | TACTTTTAATCACAACAAAA+AGG | + | chr3.1:80099847-80099866 | None:intergenic | 20.0% |
| !!! | TCTGTATAAATTTTTCAGTA+GGG | + | chr3.1:80101373-80101392 | None:intergenic | 20.0% |
| ! | ATATTACTTAAGATCCCTAA+GGG | + | chr3.1:80098779-80098798 | None:intergenic | 25.0% |
| ! | ATTAAAAAATCCTCAAATGC+TGG | + | chr3.1:80098697-80098716 | None:intergenic | 25.0% |
| ! | CTAATAACGACAAAATTTAG+AGG | + | chr3.1:80097739-80097758 | None:intergenic | 25.0% |
| ! | TCAGTTATTAAAGAACAAAG+CGG | + | chr3.1:80098407-80098426 | None:intergenic | 25.0% |
| ! | TTGAGAATAAATGTCATCTT+TGG | - | chr3.1:80101151-80101170 | MS.gene48442:intron | 25.0% |
| !! | ACATAATTCTTTTGATGTTG+AGG | - | chr3.1:80100989-80101008 | MS.gene48442:intron | 25.0% |
| !! | ATTTTGTCTAGAAAAGATGA+TGG | - | chr3.1:80099275-80099294 | MS.gene48442:intron | 25.0% |
| !! | ATTTTTACTTTGTATGTGCA+TGG | - | chr3.1:80097367-80097386 | MS.gene48442:intron | 25.0% |
| !! | CATAATTCTTTTGATGTTGA+GGG | - | chr3.1:80100990-80101009 | MS.gene48442:intron | 25.0% |
| !! | CATAGATTTTAGATGTATCT+AGG | - | chr3.1:80098957-80098976 | MS.gene48442:intron | 25.0% |
| !! | CATCTAAAATCTATGAGTAT+TGG | + | chr3.1:80098952-80098971 | None:intergenic | 25.0% |
| !! | GGTTTCTCTTATAATTTTCT+AGG | + | chr3.1:80097812-80097831 | None:intergenic | 25.0% |
| !! | TAAAGTATCTGCAAAATCAA+AGG | + | chr3.1:80097106-80097125 | None:intergenic | 25.0% |
| !! | TGATTATTTCTCAATACTAG+AGG | - | chr3.1:80098471-80098490 | MS.gene48442:intron | 25.0% |
| !! | TTTTGCAGATACTTTAGATT+CGG | - | chr3.1:80097110-80097129 | MS.gene48442:intron | 25.0% |
| !!! | CAATCATGAATTTTGGTTTA+TGG | - | chr3.1:80101406-80101425 | MS.gene48442:CDS | 25.0% |
| !!! | CACTTATTTTATTCTAGTGT+TGG | + | chr3.1:80097572-80097591 | None:intergenic | 25.0% |
| !!! | CTCTGTATTTTTTTAATTGG+CGG | - | chr3.1:80099354-80099373 | MS.gene48442:intron | 25.0% |
| !!! | TATAAATTTTTCAGTAGGGT+TGG | + | chr3.1:80101369-80101388 | None:intergenic | 25.0% |
| !!! | TTTTTTTGAAGGATTTTTCG+AGG | - | chr3.1:80099026-80099045 | MS.gene48442:intron | 25.0% |
| AAACACTACTCCAATACAAT+TGG | - | chr3.1:80099070-80099089 | MS.gene48442:intron | 30.0% | |
| AAACCAACAATATCATCAAC+TGG | + | chr3.1:80099322-80099341 | None:intergenic | 30.0% | |
| AAAGATGTTCTTGGAAAATG+GGG | - | chr3.1:80097135-80097154 | MS.gene48442:intron | 30.0% | |
| AAATAACTCTTAGCAGAAGT+GGG | + | chr3.1:80097016-80097035 | None:intergenic | 30.0% | |
| AACACTACTCCAATACAATT+GGG | - | chr3.1:80099071-80099090 | MS.gene48442:intron | 30.0% | |
| AACCAACAATATCATCAACT+GGG | + | chr3.1:80099321-80099340 | None:intergenic | 30.0% | |
| AAGTGTAGAGATTAATGAGT+TGG | - | chr3.1:80097839-80097858 | MS.gene48442:intron | 30.0% | |
| AATGACTCCAACTAAATTTC+CGG | + | chr3.1:80098592-80098611 | None:intergenic | 30.0% | |
| ACTGACATGATTGATATTTG+AGG | + | chr3.1:80098656-80098675 | None:intergenic | 30.0% | |
| ACTTTGAACCAAACCAATAT+CGG | + | chr3.1:80099661-80099680 | None:intergenic | 30.0% | |
| ACTTTGAACCAAACCAATAT+TGG | + | chr3.1:80099661-80099680 | None:intergenic | 30.0% | |
| AGAAAACACAGAAAGTAAAC+TGG | - | chr3.1:80098031-80098050 | MS.gene48442:intron | 30.0% | |
| AGGATACAATGAGTAAGAAT+GGG | + | chr3.1:80101069-80101088 | None:intergenic | 30.0% | |
| CAGAAAATATGCTAGAAACT+AGG | - | chr3.1:80097676-80097695 | MS.gene48442:intron | 30.0% | |
| CATATATGTTTCCCCAATAT+TGG | - | chr3.1:80100923-80100942 | MS.gene48442:intron | 30.0% | |
| CATCAAAAGAATTATGTGTC+TGG | + | chr3.1:80099708-80099727 | None:intergenic | 30.0% | |
| CCAAAATTCATGATTGTCAA+CGG | + | chr3.1:80101402-80101421 | None:intergenic | 30.0% | |
| CGCCAATTAAAAAAATACAG+AGG | + | chr3.1:80099356-80099375 | None:intergenic | 30.0% | |
| CTTTGAACCAAACCAATATT+GGG | + | chr3.1:80100938-80100957 | None:intergenic | 30.0% | |
| GAAAGATGTTCTTGGAAAAT+GGG | - | chr3.1:80097134-80097153 | MS.gene48442:intron | 30.0% | |
| GATATTACTTAAGATCCCTA+AGG | + | chr3.1:80098780-80098799 | None:intergenic | 30.0% | |
| GATTAGTGACTACACTTATA+TGG | - | chr3.1:80101179-80101198 | MS.gene48442:intron | 30.0% | |
| GTAATGCAGTATACATATCA+TGG | + | chr3.1:80098437-80098456 | None:intergenic | 30.0% | |
| GTCAAAATAGCTCAAATGAA+TGG | + | chr3.1:80098068-80098087 | None:intergenic | 30.0% | |
| TAACATGCAATACCGTAAAA+GGG | + | chr3.1:80098858-80098877 | None:intergenic | 30.0% | |
| TATCTGCAAAATCAAAGGAT+AGG | + | chr3.1:80097101-80097120 | None:intergenic | 30.0% | |
| TATTGAGAAATGGTAAAACG+TGG | - | chr3.1:80100674-80100693 | MS.gene48442:intron | 30.0% | |
| TATTGGACATGTACTAGTAT+CGG | + | chr3.1:80098935-80098954 | None:intergenic | 30.0% | |
| TGAAAGATGTTCTTGGAAAA+TGG | - | chr3.1:80097133-80097152 | MS.gene48442:intron | 30.0% | |
| TTAAGGAAACCAAAAGTAGT+AGG | + | chr3.1:80099501-80099520 | None:intergenic | 30.0% | |
| TTCCATAAAACAGTGAAAAC+AGG | - | chr3.1:80098089-80098108 | MS.gene48442:intron | 30.0% | |
| TTTGAACCAAACCAATATTG+GGG | + | chr3.1:80100937-80100956 | None:intergenic | 30.0% | |
| ! | AAATCAAGGATTCCCTTTTA+CGG | - | chr3.1:80098843-80098862 | MS.gene48442:intron | 30.0% |
| ! | AACCTTTTGTTGATGTAACT+AGG | - | chr3.1:80099578-80099597 | MS.gene48442:intron | 30.0% |
| ! | ACATAATTCTTTTGATGTCG+AGG | - | chr3.1:80099711-80099730 | MS.gene48442:intron | 30.0% |
| ! | AGAGATTAATGAGTTGGATA+AGG | - | chr3.1:80097845-80097864 | MS.gene48442:intron | 30.0% |
| ! | AGCTTTTCATCTTATGCATT+AGG | - | chr3.1:80101292-80101311 | MS.gene48442:CDS | 30.0% |
| ! | ATTGATATTTGAGGTTCCAA+GGG | + | chr3.1:80098647-80098666 | None:intergenic | 30.0% |
| ! | ATTTTAGATGTATCTAGGGA+AGG | - | chr3.1:80098962-80098981 | MS.gene48442:intron | 30.0% |
| ! | ATTTTGGATGATTACCCTTA+GGG | - | chr3.1:80098762-80098781 | MS.gene48442:intron | 30.0% |
| ! | CATAATTCTTTTGATGTCGA+GGG | - | chr3.1:80099712-80099731 | MS.gene48442:intron | 30.0% |
| ! | CTTTTCTAGACAAAATACAG+AGG | + | chr3.1:80099271-80099290 | None:intergenic | 30.0% |
| ! | TAACGTAAACCTACTACTTT+TGG | - | chr3.1:80099489-80099508 | MS.gene48442:intron | 30.0% |
| ! | TCCAAATTTGAAGTATGAGT+GGG | - | chr3.1:80098895-80098914 | MS.gene48442:intron | 30.0% |
| ! | TTGGAGTAGTGTTTAAAATG+TGG | + | chr3.1:80099064-80099083 | None:intergenic | 30.0% |
| ! | TTGTTCAACCTTTTTCTTCA+TGG | - | chr3.1:80099160-80099179 | MS.gene48442:intron | 30.0% |
| ! | TTTTAGATGTATCTAGGGAA+GGG | - | chr3.1:80098963-80098982 | MS.gene48442:intron | 30.0% |
| ! | TTTTCATCTTATGCATTAGG+TGG | - | chr3.1:80101295-80101314 | MS.gene48442:CDS | 30.0% |
| !! | TATTTTGGATGATTACCCTT+AGG | - | chr3.1:80098761-80098780 | MS.gene48442:intron | 30.0% |
| !! | TTTTGATGTTGAGGGTATAA+AGG | - | chr3.1:80100998-80101017 | MS.gene48442:intron | 30.0% |
| !!! | ATGCTCCAATATTTTTTTCG+AGG | - | chr3.1:80098989-80099008 | MS.gene48442:intron | 30.0% |
| !!! | GAACAAGTAGCTGTTTTTTT+TGG | + | chr3.1:80099146-80099165 | None:intergenic | 30.0% |
| !!! | GATTTTTGGAATTCGAAGAA+AGG | - | chr3.1:80098725-80098744 | MS.gene48442:intron | 30.0% |
| AAAGGCAACATAACTGAACA+TGG | + | chr3.1:80098819-80098838 | None:intergenic | 35.0% | |
| AAATAAGTGTAGCAGAGATG+AGG | - | chr3.1:80097583-80097602 | MS.gene48442:intron | 35.0% | |
| AAGGAACTCCTAAAAACTCA+GGG | + | chr3.1:80100865-80100884 | None:intergenic | 35.0% | |
| AAGGAACTCTTCAAAACTCA+GGG | + | chr3.1:80099621-80099640 | None:intergenic | 35.0% | |
| AAGGCAACATAACTGAACAT+GGG | + | chr3.1:80098818-80098837 | None:intergenic | 35.0% | |
| ACCCACTCATACTTCAAATT+TGG | + | chr3.1:80098899-80098918 | None:intergenic | 35.0% | |
| ACTAATATCACCAGCATTTG+AGG | - | chr3.1:80098684-80098703 | MS.gene48442:intron | 35.0% | |
| ACTCATTGTATCCTGAATTC+TGG | - | chr3.1:80101075-80101094 | MS.gene48442:CDS | 35.0% | |
| AGAGACATAGGGATTAGATT+CGG | + | chr3.1:80096975-80096994 | None:intergenic | 35.0% | |
| AGCAAAGGCTTCTCTTAAAT+AGG | - | chr3.1:80099419-80099438 | MS.gene48442:intron | 35.0% | |
| AGCCTAGTTACATCAACAAA+AGG | + | chr3.1:80099583-80099602 | None:intergenic | 35.0% | |
| ATATGCTAGAAACTAGGCTT+AGG | - | chr3.1:80097682-80097701 | MS.gene48442:intron | 35.0% | |
| ATGACTCCAACTAAATTTCC+GGG | + | chr3.1:80098591-80098610 | None:intergenic | 35.0% | |
| ATGATGCATCCCAATTGTAT+TGG | + | chr3.1:80099083-80099102 | None:intergenic | 35.0% | |
| CAGGATACAATGAGTAAGAA+TGG | + | chr3.1:80101070-80101089 | None:intergenic | 35.0% | |
| CATATATGTTTCCCCGATAT+TGG | - | chr3.1:80099645-80099664 | MS.gene48442:intron | 35.0% | |
| CTCTTTAACTACCAGAATTC+AGG | + | chr3.1:80101089-80101108 | None:intergenic | 35.0% | |
| CTTTGAACCAAACCAATATC+GGG | + | chr3.1:80099660-80099679 | None:intergenic | 35.0% | |
| GAAATAACTCTTAGCAGAAG+TGG | + | chr3.1:80097017-80097036 | None:intergenic | 35.0% | |
| GACTCAATGGAGCTATTATA+AGG | - | chr3.1:80098352-80098371 | MS.gene48442:intron | 35.0% | |
| GCAAGAATATGATAGGGATT+AGG | - | chr3.1:80099806-80099825 | MS.gene48442:intron | 35.0% | |
| GGAATCCTTGATTTCAAGAA+AGG | + | chr3.1:80098837-80098856 | None:intergenic | 35.0% | |
| GGGGAAACATATATGAACTA+AGG | + | chr3.1:80099640-80099659 | None:intergenic | 35.0% | |
| GTAACATGCAATACCGTAAA+AGG | + | chr3.1:80098859-80098878 | None:intergenic | 35.0% | |
| TAAGGAACTCTTCAAAACTC+AGG | + | chr3.1:80099622-80099641 | None:intergenic | 35.0% | |
| TAGAATTAGAGAGAGAGTTG+AGG | - | chr3.1:80097641-80097660 | MS.gene48442:intron | 35.0% | |
| TATAATAGCTCCATTGAGTC+TGG | + | chr3.1:80098352-80098371 | None:intergenic | 35.0% | |
| TCACAACACCATGAAGAAAA+AGG | + | chr3.1:80099171-80099190 | None:intergenic | 35.0% | |
| TCTAGACAAAATACAGAGGT+TGG | + | chr3.1:80099267-80099286 | None:intergenic | 35.0% | |
| TCTCTTAACCAATGCTCTAA+GGG | + | chr3.1:80100636-80100655 | None:intergenic | 35.0% | |
| TGTTGCCTTTCTTGAAATCA+AGG | - | chr3.1:80098829-80098848 | MS.gene48442:intron | 35.0% | |
| TTCTCTTAACCAATGCTCTA+AGG | + | chr3.1:80100637-80100656 | None:intergenic | 35.0% | |
| TTGTGATCAAGAGAAGATAG+AGG | - | chr3.1:80097422-80097441 | MS.gene48442:intron | 35.0% | |
| TTTGAACCAAACCAATATCG+GGG | + | chr3.1:80099659-80099678 | None:intergenic | 35.0% | |
| ! | AAGCTTTATCCAATCAAGTG+GGG | + | chr3.1:80097919-80097938 | None:intergenic | 35.0% |
| ! | ACATGTACTAGTATCGGATA+CGG | + | chr3.1:80098929-80098948 | None:intergenic | 35.0% |
| ! | ACTTCAAATTTGGAGTACCT+GGG | + | chr3.1:80098889-80098908 | None:intergenic | 35.0% |
| ! | ATGTTTCCCCAATATTGGTT+TGG | - | chr3.1:80100928-80100947 | MS.gene48442:intron | 35.0% |
| ! | ATTGGTGTTTGTGTTTGTGT+TGG | + | chr3.1:80096810-80096829 | None:intergenic | 35.0% |
| ! | CAAGCTTTATCCAATCAAGT+GGG | + | chr3.1:80097920-80097939 | None:intergenic | 35.0% |
| ! | CCGTTGACAATCATGAATTT+TGG | - | chr3.1:80101399-80101418 | MS.gene48442:CDS | 35.0% |
| ! | CGTGATAAACTAAGAAGCAT+AGG | - | chr3.1:80099385-80099404 | MS.gene48442:intron | 35.0% |
| ! | CTCCAAATTTGAAGTATGAG+TGG | - | chr3.1:80098894-80098913 | MS.gene48442:intron | 35.0% |
| ! | GACCTGTTTTCACTGTTTTA+TGG | + | chr3.1:80098094-80098113 | None:intergenic | 35.0% |
| ! | GAGTAGTGTTTAAAATGTGG+CGG | + | chr3.1:80099061-80099080 | None:intergenic | 35.0% |
| ! | GATTGATATTTGAGGTTCCA+AGG | + | chr3.1:80098648-80098667 | None:intergenic | 35.0% |
| ! | GGTGCTTCCTGAAATTATTT+TGG | - | chr3.1:80098746-80098765 | MS.gene48442:intron | 35.0% |
| ! | TACTTCAAATTTGGAGTACC+TGG | + | chr3.1:80098890-80098909 | None:intergenic | 35.0% |
| !! | TTGTATGTGAAGGAAGTGTT+GGG | - | chr3.1:80097536-80097555 | MS.gene48442:intron | 35.0% |
| !!! | GTTTTAAGAAGTTGTTCCTC+TGG | + | chr3.1:80098218-80098237 | None:intergenic | 35.0% |
| AAAATCACACTCTCTTCCCT+TGG | - | chr3.1:80098628-80098647 | MS.gene48442:intron | 40.0% | |
| AAAGGAGTGGAAGCTAACTA+AGG | - | chr3.1:80101016-80101035 | MS.gene48442:intron | 40.0% | |
| AAATACAAGACTCCCATGAC+AGG | + | chr3.1:80098272-80098291 | None:intergenic | 40.0% | |
| AAATTTCCGGGACACAAGTT+GGG | + | chr3.1:80098579-80098598 | None:intergenic | 40.0% | |
| AACAAAGCGGTAACAAGCAA+AGG | + | chr3.1:80098394-80098413 | None:intergenic | 40.0% | |
| AAGATAGAGGCCAATTAGAG+AGG | - | chr3.1:80097435-80097454 | MS.gene48442:intron | 40.0% | |
| AAGATCTTGCTGGAAACATG+TGG | - | chr3.1:80097190-80097209 | MS.gene48442:intron | 40.0% | |
| AGAGGATGTGTTTGCATTTC+TGG | - | chr3.1:80097453-80097472 | MS.gene48442:intron | 40.0% | |
| AGAGTGAGAATCAGAGTCTT+GGG | + | chr3.1:80096840-80096859 | None:intergenic | 40.0% | |
| AGGATCATGTGTTCAATGTG+TGG | - | chr3.1:80097603-80097622 | MS.gene48442:intron | 40.0% | |
| ATTCTTGCAAGATGTGTGTG+AGG | - | chr3.1:80099743-80099762 | MS.gene48442:intron | 40.0% | |
| CAAGGAACTCCTAAAAACTC+AGG | + | chr3.1:80100866-80100885 | None:intergenic | 40.0% | |
| CCACTTGATTGGATAAAGCT+TGG | - | chr3.1:80097918-80097937 | MS.gene48442:intron | 40.0% | |
| GAATTTGAGAGAGAGATGCA+AGG | + | chr3.1:80100884-80100903 | None:intergenic | 40.0% | |
| GACTACACTTATATGGTGTG+TGG | - | chr3.1:80101186-80101205 | MS.gene48442:intron | 40.0% | |
| GCAAACACATCCTCTCTAAT+TGG | + | chr3.1:80097448-80097467 | None:intergenic | 40.0% | |
| GCTGGTGATATTAGTCGTTA+AGG | + | chr3.1:80098679-80098698 | None:intergenic | 40.0% | |
| TAAATTTCCGGGACACAAGT+TGG | + | chr3.1:80098580-80098599 | None:intergenic | 40.0% | |
| TACTTTGTATGTGCATGGCT+GGG | - | chr3.1:80097372-80097391 | MS.gene48442:intron | 40.0% | |
| TAGGCAACTGAATAGAGCAA+AGG | - | chr3.1:80099404-80099423 | MS.gene48442:intron | 40.0% | |
| TCTTGCAAGATGTGTGTGAA+GGG | - | chr3.1:80100334-80100353 | MS.gene48442:intron | 40.0% | |
| TGGTAGAGAAAGACTGTACA+AGG | + | chr3.1:80099126-80099145 | None:intergenic | 40.0% | |
| TTACTTTGTATGTGCATGGC+TGG | - | chr3.1:80097371-80097390 | MS.gene48442:intron | 40.0% | |
| TTCTTGCAAGATGTGTGTGA+AGG | - | chr3.1:80099744-80099763 | MS.gene48442:intron | 40.0% | |
| TTCTTGCAAGATGTGTGTGA+GGG | - | chr3.1:80099744-80099763 | MS.gene48442:intron | 40.0% | |
| TTGTGTCCCGGAAATTTAGT+TGG | - | chr3.1:80098582-80098601 | MS.gene48442:intron | 40.0% | |
| TTTATCCAATCAAGTGGGGT+AGG | + | chr3.1:80097915-80097934 | None:intergenic | 40.0% | |
| ! | ATGTTGAGGGTATAAAGGAG+TGG | - | chr3.1:80101003-80101022 | MS.gene48442:intron | 40.0% |
| ! | ATGTTTCCCCGATATTGGTT+TGG | - | chr3.1:80099650-80099669 | MS.gene48442:intron | 40.0% |
| ! | CCAAGCTTTATCCAATCAAG+TGG | + | chr3.1:80097921-80097940 | None:intergenic | 40.0% |
| ! | GTGTTTGTGTTTGTGTTGGT+GGG | + | chr3.1:80096806-80096825 | None:intergenic | 40.0% |
| ! | GTTGTATGTGAAGGAAGTGT+TGG | - | chr3.1:80097535-80097554 | MS.gene48442:intron | 40.0% |
| ! | TTTAGGATACGGAGCGTAAT+CGG | + | chr3.1:80096870-80096889 | None:intergenic | 40.0% |
| ! | TTTGGGTCGAGTTTAGGATA+CGG | + | chr3.1:80096881-80096900 | None:intergenic | 40.0% |
| !! | GACCCAGTTGATGATATTGT+TGG | - | chr3.1:80099316-80099335 | MS.gene48442:intron | 40.0% |
| !! | GATTCGGTGAAAGATGTTCT+TGG | - | chr3.1:80097126-80097145 | MS.gene48442:intron | 40.0% |
| !! | TCTTCATGGTGTTGTGAGAT+GGG | - | chr3.1:80099174-80099193 | MS.gene48442:intron | 40.0% |
| !! | TTCTTCATGGTGTTGTGAGA+TGG | - | chr3.1:80099173-80099192 | MS.gene48442:intron | 40.0% |
| !!! | AACTTTTGAGACTGTACCAG+AGG | - | chr3.1:80098199-80098218 | MS.gene48442:intron | 40.0% |
| AACAAGTGCCCTAAGGGTTA+GGG | + | chr3.1:80099538-80099557 | None:intergenic | 45.0% | |
| AACCCACTTTCTTACCAGAC+TGG | - | chr3.1:80098323-80098342 | MS.gene48442:intron | 45.0% | |
| AAGAAGGCTGAAGATCTTGC+TGG | - | chr3.1:80097180-80097199 | MS.gene48442:intron | 45.0% | |
| AATTTCCGGGACACAAGTTG+GGG | + | chr3.1:80098578-80098597 | None:intergenic | 45.0% | |
| ACAGCAGCATCAGCAAAACT+AGG | + | chr3.1:80098116-80098135 | None:intergenic | 45.0% | |
| ACATAGGGATTAGATTCGGC+GGG | + | chr3.1:80096971-80096990 | None:intergenic | 45.0% | |
| ACATGAGGTTGAACTTGAGG+AGG | + | chr3.1:80096779-80096798 | None:intergenic | 45.0% | |
| ACCTGCGATGTTGTATGTGA+AGG | - | chr3.1:80097526-80097545 | MS.gene48442:intron | 45.0% | |
| ACTTTGTATGTGCATGGCTG+GGG | - | chr3.1:80097373-80097392 | MS.gene48442:intron | 45.0% | |
| AGAATCAGAGTCTTGGGGTT+TGG | + | chr3.1:80096834-80096853 | None:intergenic | 45.0% | |
| AGCAAGATCTTCAGCCTTCT+TGG | + | chr3.1:80097181-80097200 | None:intergenic | 45.0% | |
| ATGATGGTTGCCGCATGTTA+GGG | - | chr3.1:80099291-80099310 | MS.gene48442:intron | 45.0% | |
| CACCAGTCTGGTAAGAAAGT+GGG | + | chr3.1:80098328-80098347 | None:intergenic | 45.0% | |
| CATGCTAACAAGTGCCCTAA+GGG | + | chr3.1:80099544-80099563 | None:intergenic | 45.0% | |
| CTTGCAAGATGTGTGTGAAG+GGG | - | chr3.1:80100335-80100354 | MS.gene48442:intron | 45.0% | |
| GAAACTAGGCTTAGGTGCTT+TGG | - | chr3.1:80097690-80097709 | MS.gene48442:intron | 45.0% | |
| GAATCAGAGTCTTGGGGTTT+GGG | + | chr3.1:80096833-80096852 | None:intergenic | 45.0% | |
| GACATAGGGATTAGATTCGG+CGG | + | chr3.1:80096972-80096991 | None:intergenic | 45.0% | |
| GAGAGTGAGAATCAGAGTCT+TGG | + | chr3.1:80096841-80096860 | None:intergenic | 45.0% | |
| GAGTGAGAATCAGAGTCTTG+GGG | + | chr3.1:80096839-80096858 | None:intergenic | 45.0% | |
| GAGTGGAAGCTAACTAAGGT+GGG | - | chr3.1:80101020-80101039 | MS.gene48442:intron | 45.0% | |
| GCGAGGGCAAGAATATGATA+GGG | - | chr3.1:80099800-80099819 | MS.gene48442:intron | 45.0% | |
| GGTGTTTGTGTTTGTGTTGG+TGG | + | chr3.1:80096807-80096826 | None:intergenic | 45.0% | |
| TAACAAGTGCCCTAAGGGTT+AGG | + | chr3.1:80099539-80099558 | None:intergenic | 45.0% | |
| TAACAAGTGCCCTAAGGGTT+GGG | + | chr3.1:80099539-80099558 | None:intergenic | 45.0% | |
| TCACCAGTCTGGTAAGAAAG+TGG | + | chr3.1:80098329-80098348 | None:intergenic | 45.0% | |
| TCATGCTAACAAGTGCCCTA+AGG | + | chr3.1:80099545-80099564 | None:intergenic | 45.0% | |
| TCCTTCACATACAACATCGC+AGG | + | chr3.1:80097530-80097549 | None:intergenic | 45.0% | |
| TCTTGCAAGATGTGTGTGAG+GGG | - | chr3.1:80099745-80099764 | MS.gene48442:intron | 45.0% | |
| TGCATGTTACCTATGAACCC+AGG | - | chr3.1:80098869-80098888 | MS.gene48442:intron | 45.0% | |
| TGCGAGGGCAAGAATATGAT+AGG | - | chr3.1:80099799-80099818 | MS.gene48442:intron | 45.0% | |
| TGCTCAGGGAACAAAAGTTC+TGG | - | chr3.1:80098145-80098164 | MS.gene48442:intron | 45.0% | |
| TGGACATGAGGTTGAACTTG+AGG | + | chr3.1:80096782-80096801 | None:intergenic | 45.0% | |
| TTAGGATACGGAGCGTAATC+GGG | + | chr3.1:80096869-80096888 | None:intergenic | 45.0% | |
| TTGCAAGATGTGTGTGAAGG+GGG | - | chr3.1:80100336-80100355 | MS.gene48442:intron | 45.0% | |
| ! | AAGCATTGCAATCTCGCTGA+TGG | - | chr3.1:80101468-80101487 | MS.gene48442:CDS | 45.0% |
| ! | ACAAAAGTTCTGGCAGAAGG+TGG | - | chr3.1:80098155-80098174 | MS.gene48442:intron | 45.0% |
| ! | ACTCTTAGCAGAAGTGGGTT+CGG | + | chr3.1:80097011-80097030 | None:intergenic | 45.0% |
| ! | AGCTCAAGCCCTGAGTTTTT+AGG | - | chr3.1:80100854-80100873 | MS.gene48442:intron | 45.0% |
| ! | AGTTTTGCTGATGCTGCTGT+GGG | - | chr3.1:80098116-80098135 | MS.gene48442:intron | 45.0% |
| ! | GGAACAAAAGTTCTGGCAGA+AGG | - | chr3.1:80098152-80098171 | MS.gene48442:intron | 45.0% |
| ! | TTGTGTTTGTGTTGGTGGGT+TGG | + | chr3.1:80096802-80096821 | None:intergenic | 45.0% |
| ! | TTTGGAGTACCTGGGTTCAT+AGG | + | chr3.1:80098881-80098900 | None:intergenic | 45.0% |
| !! | AGACTGTACAAGGAGCACTA+AGG | + | chr3.1:80099116-80099135 | None:intergenic | 45.0% |
| !! | TAGTTTTGCTGATGCTGCTG+TGG | - | chr3.1:80098115-80098134 | MS.gene48442:intron | 45.0% |
| !!! | AATAATATATTAAATTTTAG+GGG | - | chr3.1:80100010-80100029 | MS.gene48442:CDS | 5.0% |
| !!! | ATATTTTTATAAATATTGAT+TGG | - | chr3.1:80099866-80099885 | MS.gene48442:intron | 5.0% |
| AACTGGTGCAGGAGAGACAT+AGG | + | chr3.1:80096987-80097006 | None:intergenic | 50.0% | |
| ACAAGTGCCCTAAGGGTTAG+GGG | + | chr3.1:80099537-80099556 | None:intergenic | 50.0% | |
| ACGTCGTTTGGGTCGAGTTT+AGG | + | chr3.1:80096887-80096906 | None:intergenic | 50.0% | |
| ACTAGGCTTAGGTGCTTTGG+AGG | - | chr3.1:80097693-80097712 | MS.gene48442:intron | 50.0% | |
| ACTGGGTCAACCCTAACATG+CGG | + | chr3.1:80099304-80099323 | None:intergenic | 50.0% | |
| ACTGGTGCAGGAGAGACATA+GGG | + | chr3.1:80096986-80097005 | None:intergenic | 50.0% | |
| AGACTGGTGACCAGACTCAA+TGG | - | chr3.1:80098339-80098358 | MS.gene48442:intron | 50.0% | |
| AGCTGCTGAAGCTACCAAGA+AGG | - | chr3.1:80097164-80097183 | MS.gene48442:intron | 50.0% | |
| ATCAAGTGGGGTAGGCTACA+TGG | + | chr3.1:80097907-80097926 | None:intergenic | 50.0% | |
| ATTGAGTCTGGTCACCAGTC+TGG | + | chr3.1:80098340-80098359 | None:intergenic | 50.0% | |
| CGAGATTCAGTAGCAACAGG+TGG | + | chr3.1:80096923-80096942 | None:intergenic | 50.0% | |
| CTAACAAGTGCCCTAAGGGT+TGG | + | chr3.1:80099540-80099559 | None:intergenic | 50.0% | |
| CTTGCAAGATGTGTGTGAGG+GGG | - | chr3.1:80099746-80099765 | MS.gene48442:intron | 50.0% | |
| GATTCAGTAGCAACAGGTGG+TGG | + | chr3.1:80096920-80096939 | None:intergenic | 50.0% | |
| GCTGTGGGAAGAATTGCTCA+GGG | - | chr3.1:80098131-80098150 | MS.gene48442:intron | 50.0% | |
| GGAGTGGAAGCTAACTAAGG+TGG | - | chr3.1:80101019-80101038 | MS.gene48442:intron | 50.0% | |
| TAAACCCCCAACTTGTGTCC+CGG | - | chr3.1:80098570-80098589 | MS.gene48442:intron | 50.0% | |
| TAGGATACGGAGCGTAATCG+GGG | + | chr3.1:80096868-80096887 | None:intergenic | 50.0% | |
| TGCTGTGGGAAGAATTGCTC+AGG | - | chr3.1:80098130-80098149 | MS.gene48442:intron | 50.0% | |
| TGTAGCCTACCCCACTTGAT+TGG | - | chr3.1:80097907-80097926 | MS.gene48442:intron | 50.0% | |
| TTGCAAGATGTGTGTGAGGG+GGG | - | chr3.1:80099747-80099766 | MS.gene48442:intron | 50.0% | |
| ! | AGAGTCTTGGGGTTTGGGAT+TGG | + | chr3.1:80096828-80096847 | None:intergenic | 50.0% |
| ! | ATTTCCGGGACACAAGTTGG+GGG | + | chr3.1:80098577-80098596 | None:intergenic | 50.0% |
| ! | CTCTTAGCAGAAGTGGGTTC+GGG | + | chr3.1:80097010-80097029 | None:intergenic | 50.0% |
| ! | GATGATGGTTGCCGCATGTT+AGG | - | chr3.1:80099290-80099309 | MS.gene48442:intron | 50.0% |
| ! | TGGGCTTAGGGCACTTGTTA+AGG | + | chr3.1:80100764-80100783 | None:intergenic | 50.0% |
| !! | AGTAGGGTTGGCTTTGCTTG+TGG | + | chr3.1:80101357-80101376 | None:intergenic | 50.0% |
| !! | GAAGAGTGCCCTTAGAGCAT+TGG | - | chr3.1:80100625-80100644 | MS.gene48442:intron | 50.0% |
| !! | GGTTGGCTTTGCTTGTGGAT+GGG | + | chr3.1:80101352-80101371 | None:intergenic | 50.0% |
| ACCTCTGCTGGACCTGTCAT+GGG | - | chr3.1:80098257-80098276 | MS.gene48442:intron | 55.0% | |
| ACTGCTCGCAGCTGATGCAA+TGG | + | chr3.1:80101326-80101345 | None:intergenic | 55.0% | |
| AGGATACGGAGCGTAATCGG+GGG | + | chr3.1:80096867-80096886 | None:intergenic | 55.0% | |
| ATTAGATTCGGCGGGCATGG+TGG | + | chr3.1:80096963-80096982 | None:intergenic | 55.0% | |
| CCCTAAGCCCCTAACCCTTA+GGG | - | chr3.1:80099527-80099546 | MS.gene48442:intron | 55.0% | |
| CCCTAAGGGTTAGGGGCTTA+GGG | + | chr3.1:80099530-80099549 | None:intergenic | 55.0% | |
| GCAAGATGTGTGCTGTGCGA+GGG | - | chr3.1:80099784-80099803 | MS.gene48442:intron | 55.0% | |
| GCGCGAGATTCAGTAGCAAC+AGG | + | chr3.1:80096926-80096945 | None:intergenic | 55.0% | |
| TGCAAGATGTGTGCTGTGCG+AGG | - | chr3.1:80099783-80099802 | MS.gene48442:intron | 55.0% | |
| TGCCCTAAGCCCAACCCTTA+GGG | - | chr3.1:80100771-80100790 | MS.gene48442:intron | 55.0% | |
| TGCCCTAAGGGTTGGGCTTA+GGG | + | chr3.1:80100776-80100795 | None:intergenic | 55.0% | |
| ! | GGGGCTTAGGGCACTTGTTA+AGG | + | chr3.1:80100107-80100126 | None:intergenic | 55.0% |
| ! | TCAGTAGCAACAGGTGGTGG+TGG | + | chr3.1:80096917-80096936 | None:intergenic | 55.0% |
| !! | GGCTTAGGTGCTTTGGAGGT+TGG | - | chr3.1:80097697-80097716 | MS.gene48442:intron | 55.0% |
| !! | GGGTTGGCTTTGCTTGTGGA+TGG | + | chr3.1:80101353-80101372 | None:intergenic | 55.0% |
| !! | GTGTTGGTGGGTTGGACATG+AGG | + | chr3.1:80096794-80096813 | None:intergenic | 55.0% |
| CACCTCTGCTGGACCTGTCA+TGG | - | chr3.1:80098256-80098275 | MS.gene48442:intron | 60.0% | |
| CATGACAGGTCCAGCAGAGG+TGG | + | chr3.1:80098258-80098277 | None:intergenic | 60.0% | |
| GCCCTAAGCCCCTAACCCTT+AGG | - | chr3.1:80099526-80099545 | MS.gene48442:intron | 60.0% | |
| GCCCTAAGGGTTAGGGGCTT+AGG | + | chr3.1:80099531-80099550 | None:intergenic | 60.0% | |
| GGGATTAGATTCGGCGGGCA+TGG | + | chr3.1:80096966-80096985 | None:intergenic | 60.0% | |
| GGGGCTTAGGGCACGTGTTA+AGG | + | chr3.1:80099518-80099537 | None:intergenic | 60.0% | |
| GTGCCCTAAGCCCAACCCTT+AGG | - | chr3.1:80100770-80100789 | MS.gene48442:intron | 60.0% | |
| GTGCCCTAAGGGTTGGGCTT+AGG | + | chr3.1:80100777-80100796 | None:intergenic | 60.0% | |
| TCCCATGACAGGTCCAGCAG+AGG | + | chr3.1:80098261-80098280 | None:intergenic | 60.0% | |
| TGCTACCTCTCCACCTCTGC+TGG | - | chr3.1:80098245-80098264 | MS.gene48442:intron | 60.0% | |
| ! | GCAGAAGTGGGTTCGGGAAC+TGG | + | chr3.1:80097004-80097023 | None:intergenic | 60.0% |
| ! | GTGGTGGTGCGACGTCGTTT+GGG | + | chr3.1:80096898-80096917 | None:intergenic | 60.0% |
| !! | GTAGCAACAGGTGGTGGTGG+TGG | + | chr3.1:80096914-80096933 | None:intergenic | 60.0% |
| AGATTCGGCGGGCATGGTGG+TGG | + | chr3.1:80096960-80096979 | None:intergenic | 65.0% | |
| CAGGTCCAGCAGAGGTGGAG+AGG | + | chr3.1:80098253-80098272 | None:intergenic | 65.0% | |
| GTGGGTTCGGGAACTGGTGC+AGG | + | chr3.1:80096998-80097017 | None:intergenic | 65.0% | |
| ! | GGTGGTGGTGCGACGTCGTT+TGG | + | chr3.1:80096899-80096918 | None:intergenic | 65.0% |
| !! | CATGGTGGTGGCAGCATCGG+TGG | + | chr3.1:80096948-80096967 | None:intergenic | 65.0% |
| !! | GGGCATGGTGGTGGCAGCAT+CGG | + | chr3.1:80096951-80096970 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 80096755 | 80101487 | 80096755 | ID=MS.gene48442 |
| chr3.1 | mRNA | 80096755 | 80101487 | 80096755 | ID=MS.gene48442.t1;Parent=MS.gene48442 |
| chr3.1 | exon | 80101214 | 80101487 | 80101214 | ID=MS.gene48442.t1.exon1;Parent=MS.gene48442.t1 |
| chr3.1 | CDS | 80101214 | 80101487 | 80101214 | ID=cds.MS.gene48442.t1;Parent=MS.gene48442.t1 |
| chr3.1 | exon | 80101023 | 80101124 | 80101023 | ID=MS.gene48442.t1.exon2;Parent=MS.gene48442.t1 |
| chr3.1 | CDS | 80101023 | 80101124 | 80101023 | ID=cds.MS.gene48442.t1;Parent=MS.gene48442.t1 |
| chr3.1 | exon | 80099869 | 80100140 | 80099869 | ID=MS.gene48442.t1.exon3;Parent=MS.gene48442.t1 |
| chr3.1 | CDS | 80099869 | 80100140 | 80099869 | ID=cds.MS.gene48442.t1;Parent=MS.gene48442.t1 |
| chr3.1 | exon | 80096755 | 80096928 | 80096755 | ID=MS.gene48442.t1.exon4;Parent=MS.gene48442.t1 |
| chr3.1 | CDS | 80096755 | 80096928 | 80096755 | ID=cds.MS.gene48442.t1;Parent=MS.gene48442.t1 |
| Gene Sequence |
| Protein sequence |
