Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52724.t1 | XP_013449670.1 | 95.3 | 580 | 26 | 1 | 1 | 579 | 1 | 580 | 0.00E+00 | 1115.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52724.t1 | Q60EY1 | 42.1 | 406 | 220 | 8 | 161 | 556 | 1 | 401 | 1.5e-93 | 345.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52724.t1 | A0A072U3G1 | 95.3 | 580 | 26 | 1 | 1 | 579 | 1 | 580 | 0.0e+00 | 1115.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049259 | MS.gene52724 | 0.829334 | 5.46E-55 | -1.69E-46 |
| MS.gene049281 | MS.gene52724 | 0.80291 | 4.48E-49 | -1.69E-46 |
| MS.gene049285 | MS.gene52724 | -0.806917 | 6.52E-50 | -1.69E-46 |
| MS.gene049320 | MS.gene52724 | -0.818397 | 2.00E-52 | -1.69E-46 |
| MS.gene049634 | MS.gene52724 | 0.817161 | 3.81E-52 | -1.69E-46 |
| MS.gene05015 | MS.gene52724 | 0.822583 | 2.19E-53 | -1.69E-46 |
| MS.gene050163 | MS.gene52724 | -0.804357 | 2.25E-49 | -1.69E-46 |
| MS.gene050165 | MS.gene52724 | -0.818435 | 1.96E-52 | -1.69E-46 |
| MS.gene050173 | MS.gene52724 | 0.855352 | 6.68E-62 | -1.69E-46 |
| MS.gene050333 | MS.gene52724 | -0.810028 | 1.41E-50 | -1.69E-46 |
| MS.gene050496 | MS.gene52724 | -0.814985 | 1.17E-51 | -1.69E-46 |
| MS.gene050504 | MS.gene52724 | -0.819114 | 1.38E-52 | -1.69E-46 |
| MS.gene050612 | MS.gene52724 | -0.851449 | 8.81E-61 | -1.69E-46 |
| MS.gene050675 | MS.gene52724 | -0.819809 | 9.56E-53 | -1.69E-46 |
| MS.gene05079 | MS.gene52724 | 0.839621 | 1.42E-57 | -1.69E-46 |
| MS.gene050868 | MS.gene52724 | -0.807868 | 4.10E-50 | -1.69E-46 |
| MS.gene050871 | MS.gene52724 | -0.807067 | 6.06E-50 | -1.69E-46 |
| MS.gene051044 | MS.gene52724 | 0.841278 | 5.24E-58 | -1.69E-46 |
| MS.gene051127 | MS.gene52724 | 0.816214 | 6.21E-52 | -1.69E-46 |
| MS.gene051138 | MS.gene52724 | 0.850195 | 1.99E-60 | -1.69E-46 |
| MS.gene05114 | MS.gene52724 | 0.819597 | 1.07E-52 | -1.69E-46 |
| MS.gene051366 | MS.gene52724 | 0.814184 | 1.75E-51 | -1.69E-46 |
| MS.gene051422 | MS.gene52724 | 0.80907 | 2.27E-50 | -1.69E-46 |
| MS.gene051651 | MS.gene52724 | 0.806973 | 6.34E-50 | -1.69E-46 |
| MS.gene051810 | MS.gene52724 | -0.822102 | 2.84E-53 | -1.69E-46 |
| MS.gene051863 | MS.gene52724 | 0.818955 | 1.50E-52 | -1.69E-46 |
| MS.gene051949 | MS.gene52724 | -0.800776 | 1.23E-48 | -1.69E-46 |
| MS.gene052129 | MS.gene52724 | 0.80974 | 1.63E-50 | -1.69E-46 |
| MS.gene052916 | MS.gene52724 | -0.825717 | 4.02E-54 | -1.69E-46 |
| MS.gene053420 | MS.gene52724 | 0.824307 | 8.66E-54 | -1.69E-46 |
| MS.gene053488 | MS.gene52724 | 0.822622 | 2.15E-53 | -1.69E-46 |
| MS.gene053561 | MS.gene52724 | 0.861468 | 1.00E-63 | -1.69E-46 |
| MS.gene054056 | MS.gene52724 | 0.873383 | 1.53E-67 | -1.69E-46 |
| MS.gene054642 | MS.gene52724 | -0.80695 | 6.41E-50 | -1.69E-46 |
| MS.gene054954 | MS.gene52724 | -0.823763 | 1.16E-53 | -1.69E-46 |
| MS.gene054959 | MS.gene52724 | 0.803214 | 3.88E-49 | -1.69E-46 |
| MS.gene055154 | MS.gene52724 | 0.815565 | 8.66E-52 | -1.69E-46 |
| MS.gene055502 | MS.gene52724 | -0.802757 | 4.82E-49 | -1.69E-46 |
| MS.gene055751 | MS.gene52724 | -0.820002 | 8.63E-53 | -1.69E-46 |
| MS.gene055776 | MS.gene52724 | -0.840331 | 9.27E-58 | -1.69E-46 |
| MS.gene055942 | MS.gene52724 | 0.926564 | 3.94E-91 | -1.69E-46 |
| MS.gene056224 | MS.gene52724 | 0.804714 | 1.89E-49 | -1.69E-46 |
| MS.gene056504 | MS.gene52724 | -0.812043 | 5.17E-51 | -1.69E-46 |
| MS.gene056657 | MS.gene52724 | -0.816128 | 6.49E-52 | -1.69E-46 |
| MS.gene056761 | MS.gene52724 | 0.840049 | 1.10E-57 | -1.69E-46 |
| MS.gene056856 | MS.gene52724 | 0.847511 | 1.10E-59 | -1.69E-46 |
| MS.gene056857 | MS.gene52724 | 0.822319 | 2.52E-53 | -1.69E-46 |
| MS.gene057549 | MS.gene52724 | 0.82759 | 1.44E-54 | -1.69E-46 |
| MS.gene058068 | MS.gene52724 | 0.802544 | 5.33E-49 | -1.69E-46 |
| MS.gene058093 | MS.gene52724 | 0.801568 | 8.47E-49 | -1.69E-46 |
| MS.gene058099 | MS.gene52724 | 0.835386 | 1.73E-56 | -1.69E-46 |
| MS.gene058268 | MS.gene52724 | 0.829925 | 3.92E-55 | -1.69E-46 |
| MS.gene058269 | MS.gene52724 | 0.828325 | 9.57E-55 | -1.69E-46 |
| MS.gene058334 | MS.gene52724 | 0.800375 | 1.48E-48 | -1.69E-46 |
| MS.gene058341 | MS.gene52724 | 0.807346 | 5.29E-50 | -1.69E-46 |
| MS.gene058723 | MS.gene52724 | -0.80285 | 4.61E-49 | -1.69E-46 |
| MS.gene058773 | MS.gene52724 | -0.805783 | 1.13E-49 | -1.69E-46 |
| MS.gene059022 | MS.gene52724 | -0.835673 | 1.46E-56 | -1.69E-46 |
| MS.gene059677 | MS.gene52724 | -0.822447 | 2.36E-53 | -1.69E-46 |
| MS.gene059690 | MS.gene52724 | 0.825456 | 4.64E-54 | -1.69E-46 |
| MS.gene059691 | MS.gene52724 | 0.817109 | 3.91E-52 | -1.69E-46 |
| MS.gene059694 | MS.gene52724 | 0.828321 | 9.59E-55 | -1.69E-46 |
| MS.gene059697 | MS.gene52724 | 0.828589 | 8.27E-55 | -1.69E-46 |
| MS.gene059701 | MS.gene52724 | 0.809166 | 2.16E-50 | -1.69E-46 |
| MS.gene059865 | MS.gene52724 | -0.840557 | 8.09E-58 | -1.69E-46 |
| MS.gene060337 | MS.gene52724 | 0.800209 | 1.60E-48 | -1.69E-46 |
| MS.gene060703 | MS.gene52724 | -0.80917 | 2.16E-50 | -1.69E-46 |
| MS.gene060762 | MS.gene52724 | -0.803168 | 3.97E-49 | -1.69E-46 |
| MS.gene060982 | MS.gene52724 | -0.802254 | 6.12E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52724.t1 | MTR_7g094190 | 95.345 | 580 | 26 | 1 | 1 | 579 | 1 | 580 | 0.0 | 1149 |
| MS.gene52724.t1 | MTR_7g094190 | 95.417 | 480 | 22 | 0 | 100 | 579 | 1 | 480 | 0.0 | 954 |
| MS.gene52724.t1 | MTR_7g094330 | 85.294 | 306 | 14 | 2 | 100 | 404 | 1 | 276 | 0.0 | 530 |
| MS.gene52724.t1 | MTR_7g117110 | 35.490 | 572 | 336 | 14 | 5 | 564 | 11 | 561 | 6.67e-97 | 307 |
| MS.gene52724.t1 | MTR_0102s0060 | 31.145 | 594 | 363 | 17 | 5 | 574 | 19 | 590 | 1.46e-91 | 293 |
| MS.gene52724.t1 | MTR_4g045903 | 31.107 | 569 | 368 | 10 | 8 | 567 | 33 | 586 | 7.81e-90 | 289 |
| MS.gene52724.t1 | MTR_8g027965 | 33.857 | 573 | 347 | 15 | 5 | 567 | 11 | 561 | 1.42e-89 | 288 |
| MS.gene52724.t1 | MTR_8g027920 | 32.927 | 574 | 351 | 14 | 5 | 567 | 11 | 561 | 2.17e-89 | 287 |
| MS.gene52724.t1 | MTR_8g027970 | 32.979 | 564 | 344 | 14 | 5 | 558 | 11 | 550 | 2.35e-88 | 285 |
| MS.gene52724.t1 | MTR_0035s0150 | 31.150 | 565 | 359 | 12 | 11 | 568 | 26 | 567 | 2.37e-85 | 277 |
| MS.gene52724.t1 | MTR_8g027955 | 32.112 | 573 | 357 | 13 | 5 | 567 | 18 | 568 | 2.75e-85 | 276 |
| MS.gene52724.t1 | MTR_2g081860 | 30.887 | 586 | 354 | 14 | 11 | 568 | 20 | 582 | 9.16e-82 | 268 |
| MS.gene52724.t1 | MTR_5g016320 | 30.192 | 573 | 377 | 11 | 5 | 568 | 21 | 579 | 5.14e-80 | 263 |
| MS.gene52724.t1 | MTR_1g088765 | 30.298 | 571 | 371 | 11 | 4 | 558 | 10 | 569 | 1.38e-79 | 262 |
| MS.gene52724.t1 | MTR_8g467000 | 30.465 | 581 | 368 | 14 | 6 | 567 | 16 | 579 | 3.63e-78 | 258 |
| MS.gene52724.t1 | MTR_7g117110 | 36.804 | 413 | 243 | 9 | 5 | 411 | 11 | 411 | 8.39e-70 | 231 |
| MS.gene52724.t1 | MTR_1g088765 | 31.395 | 430 | 275 | 7 | 142 | 558 | 3 | 425 | 1.58e-64 | 218 |
| MS.gene52724.t1 | MTR_8g037720 | 31.126 | 302 | 165 | 7 | 265 | 558 | 144 | 410 | 8.44e-35 | 137 |
| MS.gene52724.t1 | MTR_8g037720 | 36.719 | 128 | 77 | 2 | 5 | 132 | 2 | 125 | 8.70e-18 | 86.7 |
| MS.gene52724.t1 | MTR_1g047730 | 33.074 | 257 | 142 | 7 | 315 | 564 | 111 | 344 | 1.70e-30 | 123 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene52724.t1 | AT1G28130 | 30.584 | 582 | 375 | 10 | 8 | 568 | 14 | 587 | 1.84e-93 | 299 |
| MS.gene52724.t1 | AT1G59500 | 32.035 | 565 | 362 | 12 | 11 | 568 | 27 | 576 | 3.98e-92 | 295 |
| MS.gene52724.t1 | AT1G48660 | 32.586 | 580 | 357 | 13 | 8 | 574 | 7 | 565 | 8.36e-91 | 291 |
| MS.gene52724.t1 | AT1G48660 | 32.642 | 579 | 355 | 12 | 8 | 574 | 7 | 562 | 9.07e-91 | 291 |
| MS.gene52724.t1 | AT1G23160 | 32.124 | 579 | 352 | 14 | 8 | 569 | 15 | 569 | 1.31e-89 | 288 |
| MS.gene52724.t1 | AT5G13320 | 31.754 | 570 | 362 | 12 | 9 | 568 | 13 | 565 | 4.87e-89 | 286 |
| MS.gene52724.t1 | AT5G13320 | 31.754 | 570 | 362 | 12 | 9 | 568 | 13 | 565 | 4.87e-89 | 286 |
| MS.gene52724.t1 | AT5G13320 | 31.754 | 570 | 362 | 12 | 9 | 568 | 28 | 580 | 8.98e-89 | 286 |
| MS.gene52724.t1 | AT5G13360 | 32.343 | 572 | 355 | 14 | 11 | 568 | 17 | 570 | 8.31e-87 | 281 |
| MS.gene52724.t1 | AT5G13360 | 32.343 | 572 | 355 | 14 | 11 | 568 | 17 | 570 | 8.31e-87 | 281 |
| MS.gene52724.t1 | AT5G13360 | 32.343 | 572 | 355 | 14 | 11 | 568 | 95 | 648 | 5.78e-86 | 281 |
| MS.gene52724.t1 | AT4G03400 | 31.687 | 587 | 359 | 14 | 5 | 567 | 9 | 577 | 7.96e-86 | 278 |
| MS.gene52724.t1 | AT4G03400 | 31.687 | 587 | 359 | 14 | 5 | 567 | 9 | 577 | 7.96e-86 | 278 |
| MS.gene52724.t1 | AT4G37390 | 31.053 | 570 | 367 | 13 | 11 | 568 | 27 | 582 | 1.20e-85 | 278 |
| MS.gene52724.t1 | AT2G23170 | 30.810 | 568 | 364 | 13 | 11 | 568 | 26 | 574 | 3.11e-85 | 277 |
| MS.gene52724.t1 | AT5G13370 | 31.937 | 573 | 357 | 12 | 11 | 568 | 17 | 571 | 1.53e-84 | 275 |
| MS.gene52724.t1 | AT5G51470 | 31.986 | 569 | 356 | 13 | 11 | 569 | 16 | 563 | 2.47e-84 | 274 |
| MS.gene52724.t1 | AT2G46370 | 32.639 | 576 | 351 | 17 | 5 | 567 | 11 | 562 | 8.49e-84 | 273 |
| MS.gene52724.t1 | AT2G46370 | 32.639 | 576 | 351 | 17 | 5 | 567 | 11 | 562 | 8.49e-84 | 273 |
| MS.gene52724.t1 | AT2G46370 | 32.639 | 576 | 351 | 17 | 5 | 567 | 22 | 573 | 1.11e-83 | 273 |
| MS.gene52724.t1 | AT2G14960 | 30.458 | 568 | 360 | 12 | 11 | 568 | 26 | 568 | 1.31e-83 | 273 |
| MS.gene52724.t1 | AT4G27260 | 31.606 | 579 | 360 | 13 | 8 | 567 | 25 | 586 | 1.85e-82 | 270 |
| MS.gene52724.t1 | AT5G54510 | 30.915 | 579 | 364 | 13 | 8 | 567 | 25 | 586 | 1.62e-80 | 265 |
| MS.gene52724.t1 | AT5G13350 | 30.823 | 571 | 366 | 12 | 11 | 568 | 17 | 571 | 3.68e-80 | 263 |
| MS.gene52724.t1 | AT5G13350 | 30.823 | 571 | 366 | 12 | 11 | 568 | 17 | 571 | 3.68e-80 | 263 |
| MS.gene52724.t1 | AT5G13380 | 30.810 | 568 | 369 | 11 | 11 | 568 | 47 | 600 | 1.04e-76 | 255 |
| MS.gene52724.t1 | AT2G47750 | 31.250 | 576 | 353 | 18 | 5 | 561 | 9 | 560 | 2.93e-76 | 253 |
| MS.gene52724.t1 | AT1G28130 | 32.432 | 407 | 252 | 6 | 181 | 568 | 42 | 444 | 1.18e-74 | 245 |
| MS.gene52724.t1 | AT1G48670 | 29.879 | 579 | 336 | 12 | 1 | 574 | 1 | 514 | 4.36e-73 | 243 |
| MS.gene52724.t1 | AT5G51470 | 31.772 | 491 | 307 | 11 | 89 | 569 | 1 | 473 | 2.63e-72 | 240 |
| MS.gene52724.t1 | AT2G46370 | 32.544 | 507 | 307 | 15 | 72 | 567 | 1 | 483 | 5.95e-72 | 239 |
| MS.gene52724.t1 | AT1G48670 | 33.666 | 401 | 250 | 6 | 179 | 574 | 14 | 403 | 9.80e-72 | 236 |
Find 119 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAAAGCTGCCTCCTTTCT+TGG | 0.216718 | 7.2:+15279738 | MS.gene52724:CDS |
| TACAACTAAACGTGGCTTAA+AGG | 0.223574 | 7.2:+15279966 | MS.gene52724:CDS |
| TCATGATTCCTTATAATCTT+TGG | 0.243867 | 7.2:-15281173 | None:intergenic |
| CTCTTCTCTGCTTCTTCTAT+AGG | 0.284728 | 7.2:+15279395 | MS.gene52724:CDS |
| TTTCGATCAGTTATCAGATT+TGG | 0.291888 | 7.2:+15281112 | MS.gene52724:CDS |
| AGTCCCCTGGAAGTTATAAT+TGG | 0.292019 | 7.2:+15280057 | MS.gene52724:CDS |
| TGTTGAGTTTGCAAGTTTCT+TGG | 0.299538 | 7.2:+15280887 | MS.gene52724:CDS |
| TCCTCTCTTGAGAATGGTTT+AGG | 0.317132 | 7.2:+15281017 | MS.gene52724:CDS |
| TCAAAGTAAGGGATCAGTTT+TGG | 0.319994 | 7.2:-15279705 | None:intergenic |
| CATAGGATCTTGTTTACATT+TGG | 0.326061 | 7.2:-15279916 | None:intergenic |
| AGTTTGTGAAGGTAAGAATT+GGG | 0.327806 | 7.2:+15280335 | MS.gene52724:CDS |
| ATAAGCCACCAAAGATTATA+AGG | 0.328611 | 7.2:+15281165 | MS.gene52724:CDS |
| CGATCAATCCTTCAACATAA+TGG | 0.332826 | 7.2:+15279214 | MS.gene52724:CDS |
| TCATGAAGTTGTCAAGTTCT+TGG | 0.335217 | 7.2:+15281190 | MS.gene52724:CDS |
| ATAAATACCTTCAACTGCTT+TGG | 0.348086 | 7.2:-15280924 | None:intergenic |
| TAGATCCAATTATAACTTCC+AGG | 0.355197 | 7.2:-15280062 | None:intergenic |
| AGGAATCTTGATGTTATAGA+TGG | 0.357105 | 7.2:+15280126 | MS.gene52724:CDS |
| ATCTTGTTTACATTTGGCCT+TGG | 0.360685 | 7.2:-15279910 | None:intergenic |
| TACAAGGTGCAGAGAGAAAA+AGG | 0.360703 | 7.2:+15281047 | MS.gene52724:CDS |
| GGCGATATAGTTAGAGTTGT+TGG | 0.370089 | 7.2:+15280717 | MS.gene52724:CDS |
| GAAAGGCTTGAATCAAAGTA+AGG | 0.381997 | 7.2:-15279717 | None:intergenic |
| GTTTGCAAGTTTCTTGGATC+AGG | 0.392810 | 7.2:+15280893 | MS.gene52724:CDS |
| TCATCTGAAATTTCATGACT+TGG | 0.392995 | 7.2:-15280243 | None:intergenic |
| GCCACCTTCTCTGTGGCCTT+AGG | 0.400497 | 7.2:+15280106 | MS.gene52724:CDS |
| TCAGATTTGGCTCTTAAGAA+TGG | 0.402524 | 7.2:+15281125 | MS.gene52724:CDS |
| TAGTTTGTGAAGGTAAGAAT+TGG | 0.402669 | 7.2:+15280334 | MS.gene52724:CDS |
| TCTTCATACTCTTTACAAAC+TGG | 0.413261 | 7.2:+15280000 | MS.gene52724:CDS |
| TACACATAGCTGCTCCCATT+TGG | 0.419597 | 7.2:-15280202 | None:intergenic |
| CATGTTCTCCATCAGCCATC+TGG | 0.419650 | 7.2:-15279345 | None:intergenic |
| AGTTCATCACCTGTCATCAT+TGG | 0.427246 | 7.2:-15279133 | None:intergenic |
| TGTATTTCCTCTCTTGAGAA+TGG | 0.427898 | 7.2:+15281011 | MS.gene52724:CDS |
| TAGTACGAACCGTGTTGTCT+CGG | 0.428215 | 7.2:-15280535 | None:intergenic |
| TAATTCTCATTCATCTCAAA+TGG | 0.432297 | 7.2:-15280588 | None:intergenic |
| TTGTTTACATTTGGCCTTGG+AGG | 0.432776 | 7.2:-15279907 | None:intergenic |
| TAACAGAACCATTATGTTGA+AGG | 0.435178 | 7.2:-15279222 | None:intergenic |
| CGCCTAAAAGATCCACTGTT+TGG | 0.436293 | 7.2:-15280629 | None:intergenic |
| GGTGGCTTATATTGACTAGC+TGG | 0.437086 | 7.2:-15281152 | None:intergenic |
| TAAACGTGGCTTAAAGGTTA+TGG | 0.437413 | 7.2:+15279972 | MS.gene52724:CDS |
| TTTATCAAGTGCGTTACAAC+AGG | 0.439169 | 7.2:+15280393 | MS.gene52724:CDS |
| AAAGTCAACGTAATCATCAT+AGG | 0.442906 | 7.2:-15279317 | None:intergenic |
| ATAGATTGTTTCCGAATGTT+CGG | 0.446193 | 7.2:+15280370 | MS.gene52724:CDS |
| TGATTCCTTATAATCTTTGG+TGG | 0.451928 | 7.2:-15281170 | None:intergenic |
| TTAATCAAACCTATGGCATA+AGG | 0.457001 | 7.2:-15280159 | None:intergenic |
| AGTCTAATAACTTGAAGGAA+TGG | 0.458645 | 7.2:+15280970 | MS.gene52724:CDS |
| TTTGCTTCTGAGTGTTGTGT+AGG | 0.460989 | 7.2:+15280486 | MS.gene52724:CDS |
| AATTTCCATCTTGCACTAAG+AGG | 0.462310 | 7.2:+15280837 | MS.gene52724:CDS |
| TCCTACAATCGGTACATCTC+CGG | 0.465120 | 7.2:-15280454 | None:intergenic |
| GAAGCTGTAATCAACACTAT+TGG | 0.466393 | 7.2:+15280276 | MS.gene52724:CDS |
| GTCTAATAACTTGAAGGAAT+GGG | 0.466720 | 7.2:+15280971 | MS.gene52724:CDS |
| ACCTTCAACTGCTTTGGCAT+CGG | 0.468257 | 7.2:-15280918 | None:intergenic |
| AGTACGAACCGTGTTGTCTC+GGG | 0.470826 | 7.2:-15280534 | None:intergenic |
| GATCGAAAGCTCCTTGCCTT+AGG | 0.471571 | 7.2:-15281097 | None:intergenic |
| GAGAATTATGAGGATGTTGT+TGG | 0.477592 | 7.2:+15280603 | MS.gene52724:CDS |
| GAAGGTATTTATAGAAGTAG+AGG | 0.481000 | 7.2:+15280935 | MS.gene52724:CDS |
| CACTTGATAAACCGAACATT+CGG | 0.481170 | 7.2:-15280381 | None:intergenic |
| AAATGCTTTAATCAAACCTA+TGG | 0.485080 | 7.2:-15280166 | None:intergenic |
| ATTAGTACTCCTTATGCCAT+AGG | 0.485763 | 7.2:+15280150 | MS.gene52724:CDS |
| GTTTGTGAAGGTAAGAATTG+GGG | 0.497604 | 7.2:+15280336 | MS.gene52724:CDS |
| CAAATGTAAACAAGATCCTA+TGG | 0.504271 | 7.2:+15279917 | MS.gene52724:CDS |
| ACAGCCTCGGTGACCAAGAA+AGG | 0.505851 | 7.2:-15279751 | None:intergenic |
| ACCGATGCCAAAGCAGTTGA+AGG | 0.508276 | 7.2:+15280917 | MS.gene52724:CDS |
| GCCGGAGATGTACCGATTGT+AGG | 0.513506 | 7.2:+15280453 | MS.gene52724:CDS |
| ACAAGACTTGTGAAAGAAGC+AGG | 0.515362 | 7.2:-15279283 | None:intergenic |
| TGAGATGAATGAGAATTATG+AGG | 0.520067 | 7.2:+15280593 | MS.gene52724:CDS |
| AAGTAATCTCCTCCTACAAT+CGG | 0.525370 | 7.2:-15280465 | None:intergenic |
| AGAGGAGTCTAATAACTTGA+AGG | 0.526734 | 7.2:+15280965 | MS.gene52724:CDS |
| TGCAACGTTCTCTAGTCCCC+TGG | 0.529657 | 7.2:+15280044 | MS.gene52724:CDS |
| ATACTCTTTACAAACTGGTA+AGG | 0.530086 | 7.2:+15280005 | MS.gene52724:CDS |
| AGAATCTCAGCTGAAGACTT+AGG | 0.531876 | 7.2:-15280783 | None:intergenic |
| AGAAGTAGAGGAAGTTCAAG+AGG | 0.534240 | 7.2:+15280947 | MS.gene52724:CDS |
| CTATTTGACAATTCATGTTG+AGG | 0.536323 | 7.2:-15280303 | None:intergenic |
| CAACTTGAGGTGATGAATTG+TGG | 0.539457 | 7.2:-15280743 | None:intergenic |
| TTTATCCACCAGATGGCTGA+TGG | 0.540871 | 7.2:+15279337 | MS.gene52724:CDS |
| AGAATAAGATTAGTTTGTGA+AGG | 0.542973 | 7.2:+15280324 | MS.gene52724:CDS |
| GGATGCAAAACATCATCAGT+TGG | 0.547643 | 7.2:+15279183 | MS.gene52724:CDS |
| CTATCCTATCCAATGATGAC+AGG | 0.548921 | 7.2:+15279124 | None:intergenic |
| TGTGAAGGTAAGAATTGGGG+TGG | 0.552567 | 7.2:+15280339 | MS.gene52724:CDS |
| GAGAACGTTGCAAGTTGTTG+AGG | 0.552779 | 7.2:-15280033 | None:intergenic |
| AGATCCAATTATAACTTCCA+GGG | 0.558522 | 7.2:-15280061 | None:intergenic |
| CTTGCACTAAGAGGTGCTAC+GGG | 0.560278 | 7.2:+15280846 | MS.gene52724:CDS |
| TCTTGCACTAAGAGGTGCTA+CGG | 0.561894 | 7.2:+15280845 | MS.gene52724:CDS |
| AAATGGAAGAAACTCAAAGT+AGG | 0.564938 | 7.2:-15280571 | None:intergenic |
| AGTTATAATTGGATCTAATG+TGG | 0.566485 | 7.2:+15280068 | MS.gene52724:CDS |
| AACTCAAAGTAGGCAAAAGT+AGG | 0.567325 | 7.2:-15280561 | None:intergenic |
| CGTTGACTTTATCCACCAGA+TGG | 0.567543 | 7.2:+15279330 | MS.gene52724:CDS |
| GTTCTCCATCAGCCATCTGG+TGG | 0.567675 | 7.2:-15279342 | None:intergenic |
| AAGTCATGAAATTTCAGATG+AGG | 0.571087 | 7.2:+15280245 | MS.gene52724:CDS |
| GCTGTATCGCTGTTCTTCAA+AGG | 0.571437 | 7.2:+15279769 | MS.gene52724:CDS |
| TAGCACCTCTTAGTGCAAGA+TGG | 0.573998 | 7.2:-15280842 | None:intergenic |
| TGGTTTAGGAGCATTGTACA+AGG | 0.576214 | 7.2:+15281031 | MS.gene52724:CDS |
| CTCATAACAAATTCAACTTG+AGG | 0.577362 | 7.2:-15280756 | None:intergenic |
| GATTCCTAAGGCCACAGAGA+AGG | 0.577447 | 7.2:-15280110 | None:intergenic |
| ACTTAATGATAATTATCCTA+AGG | 0.579665 | 7.2:+15281081 | MS.gene52724:CDS |
| ATGATAATTATCCTAAGGCA+AGG | 0.584299 | 7.2:+15281086 | MS.gene52724:CDS |
| GCTGTAATCAACACTATTGG+TGG | 0.584574 | 7.2:+15280279 | MS.gene52724:CDS |
| AAAGGCTTGAATCAAAGTAA+GGG | 0.587333 | 7.2:-15279716 | None:intergenic |
| TCCTAAGGCCACAGAGAAGG+TGG | 0.588668 | 7.2:-15280107 | None:intergenic |
| CTATAGAAGAAGCAGAGAAG+AGG | 0.590382 | 7.2:-15279394 | None:intergenic |
| CTATGTGTAGATCTTGATTG+TGG | 0.591963 | 7.2:+15280216 | MS.gene52724:CDS |
| TCCTAAACCATTCTCAAGAG+AGG | 0.592651 | 7.2:-15281018 | None:intergenic |
| CTATAACATCAAGATTCCTA+AGG | 0.593541 | 7.2:-15280122 | None:intergenic |
| GAAGAACAGCGATACAGCCT+CGG | 0.604012 | 7.2:-15279764 | None:intergenic |
| GGAGATGTACCGATTGTAGG+AGG | 0.617561 | 7.2:+15280456 | MS.gene52724:CDS |
| GATGCAGGATGTTTCCTCCA+AGG | 0.619465 | 7.2:+15279893 | MS.gene52724:intron |
| ACGAACCGTGTTGTCTCGGG+TGG | 0.628593 | 7.2:-15280531 | None:intergenic |
| TGTCAGCGTAGAGAAACCAT+AGG | 0.638254 | 7.2:-15279933 | None:intergenic |
| CACAACCACCCGAGACAACA+CGG | 0.644768 | 7.2:+15280526 | MS.gene52724:CDS |
| GATCCAATTATAACTTCCAG+GGG | 0.646433 | 7.2:-15280060 | None:intergenic |
| GCCTCCTTTCTTGGTCACCG+AGG | 0.653577 | 7.2:+15279747 | MS.gene52724:CDS |
| GGTTGGAAAGATGTATGAAG+TGG | 0.655471 | 7.2:+15280656 | MS.gene52724:CDS |
| AGTTTGTAAAGAGTATGAAG+AGG | 0.658887 | 7.2:-15279998 | None:intergenic |
| ATTACTACTACAACTAAACG+TGG | 0.671461 | 7.2:+15279958 | MS.gene52724:CDS |
| TAATCATCATAGGAAGACAA+AGG | 0.675878 | 7.2:-15279307 | None:intergenic |
| GAAGCTAGAAGAGTTGACAA+TGG | 0.676230 | 7.2:+15279162 | MS.gene52724:CDS |
| ATGTATTGCCACCTTCTCTG+TGG | 0.676460 | 7.2:+15280099 | MS.gene52724:CDS |
| GCCTCGGTGACCAAGAAAGG+AGG | 0.681075 | 7.2:-15279748 | None:intergenic |
| ATTTGTATCGATAAAATCCG+CGG | 0.690641 | 7.2:-15280692 | None:intergenic |
| TGTTGTTGGTGACCAAACAG+TGG | 0.704890 | 7.2:+15280617 | MS.gene52724:CDS |
| GTGGTTGTTACTACTTACCG+CGG | 0.726364 | 7.2:+15280675 | MS.gene52724:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAATTTTGTTTATAAATTAT+AGG | - | chr7.2:15279589-15279608 | None:intergenic | 10.0% |
| !!! | AATGCAATTTCATTAATTTT+AGG | + | chr7.2:15279547-15279566 | MS.gene52724:intron | 15.0% |
| !! | ACTTAATGATAATTATCCTA+AGG | + | chr7.2:15281081-15281100 | MS.gene52724:CDS | 20.0% |
| !! | TCAATGATTTAGATCAAAAA+GGG | - | chr7.2:15279506-15279525 | None:intergenic | 20.0% |
| !!! | AAATTGCATTTTTAATGCAA+AGG | - | chr7.2:15279537-15279556 | None:intergenic | 20.0% |
| !!! | GATTAAAGCATTTAGTTTTT+TGG | + | chr7.2:15280176-15280195 | MS.gene52724:CDS | 20.0% |
| !!! | TTTCAATTAGTTCTTTTTCT+AGG | + | chr7.2:15279440-15279459 | MS.gene52724:intron | 20.0% |
| !!! | TTTGTTATAGGAGAATTTAT+TGG | + | chr7.2:15279464-15279483 | MS.gene52724:intron | 20.0% |
| ! | AAATGCTTTAATCAAACCTA+TGG | - | chr7.2:15280169-15280188 | None:intergenic | 25.0% |
| ! | ACGTAAGAACTTTCAAAATT+TGG | - | chr7.2:15279834-15279853 | None:intergenic | 25.0% |
| ! | AGTTATAATTGGATCTAATG+TGG | + | chr7.2:15280068-15280087 | MS.gene52724:CDS | 25.0% |
| ! | GTCAATGATTTAGATCAAAA+AGG | - | chr7.2:15279507-15279526 | None:intergenic | 25.0% |
| ! | TAATTCTCATTCATCTCAAA+TGG | - | chr7.2:15280591-15280610 | None:intergenic | 25.0% |
| ! | TCATGATTCCTTATAATCTT+TGG | - | chr7.2:15281176-15281195 | None:intergenic | 25.0% |
| ! | TTGAAATGAAGAGTTAAAAG+TGG | - | chr7.2:15279426-15279445 | None:intergenic | 25.0% |
| !! | GGATTTTATCGATACAAATT+GGG | + | chr7.2:15280696-15280715 | MS.gene52724:CDS | 25.0% |
| !!! | AGAATAAGATTAGTTTGTGA+AGG | + | chr7.2:15280324-15280343 | MS.gene52724:CDS | 25.0% |
| !!! | CAAAAACTTAAGTTTTATGC+CGG | + | chr7.2:15280435-15280454 | MS.gene52724:CDS | 25.0% |
| !!! | TGCTTTTATTAGAGTATCAA+TGG | + | chr7.2:15281220-15281239 | MS.gene52724:CDS | 25.0% |
| AAAGGCTTGAATCAAAGTAA+GGG | - | chr7.2:15279719-15279738 | None:intergenic | 30.0% | |
| AAAGTCAACGTAATCATCAT+AGG | - | chr7.2:15279320-15279339 | None:intergenic | 30.0% | |
| AAATGGAAGAAACTCAAAGT+AGG | - | chr7.2:15280574-15280593 | None:intergenic | 30.0% | |
| AAGTCATGAAATTTCAGATG+AGG | + | chr7.2:15280245-15280264 | MS.gene52724:CDS | 30.0% | |
| AGAGAGAAAAAGGTCATATA+AGG | + | chr7.2:15281057-15281076 | MS.gene52724:CDS | 30.0% | |
| AGATCCAATTATAACTTCCA+GGG | - | chr7.2:15280064-15280083 | None:intergenic | 30.0% | |
| AGGAATCTTGATGTTATAGA+TGG | + | chr7.2:15280126-15280145 | MS.gene52724:CDS | 30.0% | |
| AGTCTAATAACTTGAAGGAA+TGG | + | chr7.2:15280970-15280989 | MS.gene52724:CDS | 30.0% | |
| AGTTTGTGAAGGTAAGAATT+GGG | + | chr7.2:15280335-15280354 | MS.gene52724:CDS | 30.0% | |
| ATAAATACCTTCAACTGCTT+TGG | - | chr7.2:15280927-15280946 | None:intergenic | 30.0% | |
| ATAAGCCACCAAAGATTATA+AGG | + | chr7.2:15281165-15281184 | MS.gene52724:CDS | 30.0% | |
| ATACTCTTTACAAACTGGTA+AGG | + | chr7.2:15280005-15280024 | MS.gene52724:CDS | 30.0% | |
| ATAGATTGTTTCCGAATGTT+CGG | + | chr7.2:15280370-15280389 | MS.gene52724:CDS | 30.0% | |
| ATGATAATTATCCTAAGGCA+AGG | + | chr7.2:15281086-15281105 | MS.gene52724:CDS | 30.0% | |
| ATTACTACTACAACTAAACG+TGG | + | chr7.2:15279958-15279977 | MS.gene52724:CDS | 30.0% | |
| CAAATGTAAACAAGATCCTA+TGG | + | chr7.2:15279917-15279936 | MS.gene52724:CDS | 30.0% | |
| CTATAACATCAAGATTCCTA+AGG | - | chr7.2:15280125-15280144 | None:intergenic | 30.0% | |
| CTATTTGACAATTCATGTTG+AGG | - | chr7.2:15280306-15280325 | None:intergenic | 30.0% | |
| CTCATAACAAATTCAACTTG+AGG | - | chr7.2:15280759-15280778 | None:intergenic | 30.0% | |
| GTCTAATAACTTGAAGGAAT+GGG | + | chr7.2:15280971-15280990 | MS.gene52724:CDS | 30.0% | |
| TAACAGAACCATTATGTTGA+AGG | - | chr7.2:15279225-15279244 | None:intergenic | 30.0% | |
| TAATCATCATAGGAAGACAA+AGG | - | chr7.2:15279310-15279329 | None:intergenic | 30.0% | |
| TAGATCCAATTATAACTTCC+AGG | - | chr7.2:15280065-15280084 | None:intergenic | 30.0% | |
| TCTTCATACTCTTTACAAAC+TGG | + | chr7.2:15280000-15280019 | MS.gene52724:CDS | 30.0% | |
| TGAGATGAATGAGAATTATG+AGG | + | chr7.2:15280593-15280612 | MS.gene52724:CDS | 30.0% | |
| TGATTCCTTATAATCTTTGG+TGG | - | chr7.2:15281173-15281192 | None:intergenic | 30.0% | |
| TTAATCAAACCTATGGCATA+AGG | - | chr7.2:15280162-15280181 | None:intergenic | 30.0% | |
| TTTCGATCAGTTATCAGATT+TGG | + | chr7.2:15281112-15281131 | MS.gene52724:CDS | 30.0% | |
| ! | AGTTTGTAAAGAGTATGAAG+AGG | - | chr7.2:15280001-15280020 | None:intergenic | 30.0% |
| ! | ATTTGTATCGATAAAATCCG+CGG | - | chr7.2:15280695-15280714 | None:intergenic | 30.0% |
| ! | CATAGGATCTTGTTTACATT+TGG | - | chr7.2:15279919-15279938 | None:intergenic | 30.0% |
| ! | CGGATTTTATCGATACAAAT+TGG | + | chr7.2:15280695-15280714 | MS.gene52724:CDS | 30.0% |
| ! | TAGTTTGTGAAGGTAAGAAT+TGG | + | chr7.2:15280334-15280353 | MS.gene52724:CDS | 30.0% |
| ! | TCATCTGAAATTTCATGACT+TGG | - | chr7.2:15280246-15280265 | None:intergenic | 30.0% |
| ! | TTTTTAATGCAAAGGTGATG+AGG | - | chr7.2:15279529-15279548 | None:intergenic | 30.0% |
| !! | GAAGGTATTTATAGAAGTAG+AGG | + | chr7.2:15280935-15280954 | MS.gene52724:CDS | 30.0% |
| !!! | CTTTTTCTAGGCTTTGTTAT+AGG | + | chr7.2:15279452-15279471 | MS.gene52724:intron | 30.0% |
| !!! | TAGTTTTTTGGAGTCCAAAT+GGG | + | chr7.2:15280188-15280207 | MS.gene52724:CDS | 30.0% |
| !!! | TTAGTTTTTTGGAGTCCAAA+TGG | + | chr7.2:15280187-15280206 | MS.gene52724:CDS | 30.0% |
| AACTCAAAGTAGGCAAAAGT+AGG | - | chr7.2:15280564-15280583 | None:intergenic | 35.0% | |
| AAGTAATCTCCTCCTACAAT+CGG | - | chr7.2:15280468-15280487 | None:intergenic | 35.0% | |
| AATTTCCATCTTGCACTAAG+AGG | + | chr7.2:15280837-15280856 | MS.gene52724:CDS | 35.0% | |
| AGAGGAGTCTAATAACTTGA+AGG | + | chr7.2:15280965-15280984 | MS.gene52724:CDS | 35.0% | |
| ATTAGTACTCCTTATGCCAT+AGG | + | chr7.2:15280150-15280169 | MS.gene52724:CDS | 35.0% | |
| CACTTGATAAACCGAACATT+CGG | - | chr7.2:15280384-15280403 | None:intergenic | 35.0% | |
| CGATCAATCCTTCAACATAA+TGG | + | chr7.2:15279214-15279233 | MS.gene52724:CDS | 35.0% | |
| CTATGTGTAGATCTTGATTG+TGG | + | chr7.2:15280216-15280235 | MS.gene52724:CDS | 35.0% | |
| GAAAGGCTTGAATCAAAGTA+AGG | - | chr7.2:15279720-15279739 | None:intergenic | 35.0% | |
| GAAGCTGTAATCAACACTAT+TGG | + | chr7.2:15280276-15280295 | MS.gene52724:CDS | 35.0% | |
| GAGAATTATGAGGATGTTGT+TGG | + | chr7.2:15280603-15280622 | MS.gene52724:CDS | 35.0% | |
| GATCCAATTATAACTTCCAG+GGG | - | chr7.2:15280063-15280082 | None:intergenic | 35.0% | |
| GTTTGTGAAGGTAAGAATTG+GGG | + | chr7.2:15280336-15280355 | MS.gene52724:CDS | 35.0% | |
| TAAACGTGGCTTAAAGGTTA+TGG | + | chr7.2:15279972-15279991 | MS.gene52724:CDS | 35.0% | |
| TACAACTAAACGTGGCTTAA+AGG | + | chr7.2:15279966-15279985 | MS.gene52724:CDS | 35.0% | |
| TCATGAAGTTGTCAAGTTCT+TGG | + | chr7.2:15281190-15281209 | MS.gene52724:CDS | 35.0% | |
| TGTATTTCCTCTCTTGAGAA+TGG | + | chr7.2:15281011-15281030 | MS.gene52724:CDS | 35.0% | |
| TGTTGAGTTTGCAAGTTTCT+TGG | + | chr7.2:15280887-15280906 | MS.gene52724:CDS | 35.0% | |
| TTACTCTGATGTGATTGTGA+TGG | + | chr7.2:15279614-15279633 | MS.gene52724:intron | 35.0% | |
| TTTATCAAGTGCGTTACAAC+AGG | + | chr7.2:15280393-15280412 | MS.gene52724:CDS | 35.0% | |
| ! | ATCTTGTTTACATTTGGCCT+TGG | - | chr7.2:15279913-15279932 | None:intergenic | 35.0% |
| ! | TCAAAGTAAGGGATCAGTTT+TGG | - | chr7.2:15279708-15279727 | None:intergenic | 35.0% |
| !! | TCAGATTTGGCTCTTAAGAA+TGG | + | chr7.2:15281125-15281144 | MS.gene52724:CDS | 35.0% |
| ACAAGACTTGTGAAAGAAGC+AGG | - | chr7.2:15279286-15279305 | None:intergenic | 40.0% | |
| AGAAGTAGAGGAAGTTCAAG+AGG | + | chr7.2:15280947-15280966 | MS.gene52724:CDS | 40.0% | |
| AGAATCTCAGCTGAAGACTT+AGG | - | chr7.2:15280786-15280805 | None:intergenic | 40.0% | |
| AGTCCCCTGGAAGTTATAAT+TGG | + | chr7.2:15280057-15280076 | MS.gene52724:CDS | 40.0% | |
| CAACTTGAGGTGATGAATTG+TGG | - | chr7.2:15280746-15280765 | None:intergenic | 40.0% | |
| CTATAGAAGAAGCAGAGAAG+AGG | - | chr7.2:15279397-15279416 | None:intergenic | 40.0% | |
| CTCTTCTCTGCTTCTTCTAT+AGG | + | chr7.2:15279395-15279414 | MS.gene52724:CDS | 40.0% | |
| GAAGCTAGAAGAGTTGACAA+TGG | + | chr7.2:15279162-15279181 | MS.gene52724:CDS | 40.0% | |
| GCTGTAATCAACACTATTGG+TGG | + | chr7.2:15280279-15280298 | MS.gene52724:CDS | 40.0% | |
| GGATGCAAAACATCATCAGT+TGG | + | chr7.2:15279183-15279202 | MS.gene52724:CDS | 40.0% | |
| GGCGATATAGTTAGAGTTGT+TGG | + | chr7.2:15280717-15280736 | MS.gene52724:CDS | 40.0% | |
| GGTTGGAAAGATGTATGAAG+TGG | + | chr7.2:15280656-15280675 | MS.gene52724:CDS | 40.0% | |
| GTTTGCAAGTTTCTTGGATC+AGG | + | chr7.2:15280893-15280912 | MS.gene52724:CDS | 40.0% | |
| TACAAGGTGCAGAGAGAAAA+AGG | + | chr7.2:15281047-15281066 | MS.gene52724:CDS | 40.0% | |
| TCCTAAACCATTCTCAAGAG+AGG | - | chr7.2:15281021-15281040 | None:intergenic | 40.0% | |
| TCCTCTCTTGAGAATGGTTT+AGG | + | chr7.2:15281017-15281036 | MS.gene52724:CDS | 40.0% | |
| ! | ATTTGAAACCTCCATGATGC+AGG | + | chr7.2:15279878-15279897 | MS.gene52724:intron | 40.0% |
| ! | GACCAAACAGTGGATCTTTT+AGG | + | chr7.2:15280627-15280646 | MS.gene52724:CDS | 40.0% |
| ! | TTTGCTTCTGAGTGTTGTGT+AGG | + | chr7.2:15280486-15280505 | MS.gene52724:CDS | 40.0% |
| !! | TGGTTTAGGAGCATTGTACA+AGG | + | chr7.2:15281031-15281050 | MS.gene52724:CDS | 40.0% |
| !! | TTGTTTACATTTGGCCTTGG+AGG | - | chr7.2:15279910-15279929 | None:intergenic | 40.0% |
| !!! | AGGGATCAGTTTTGGTTTCA+TGG | - | chr7.2:15279700-15279719 | None:intergenic | 40.0% |
| !!! | GATCAGTTTTGGTTTCATGG+AGG | - | chr7.2:15279697-15279716 | None:intergenic | 40.0% |
| ACCTTCAACTGCTTTGGCAT+CGG | - | chr7.2:15280921-15280940 | None:intergenic | 45.0% | |
| ATGTATTGCCACCTTCTCTG+TGG | + | chr7.2:15280099-15280118 | MS.gene52724:CDS | 45.0% | |
| CGCCTAAAAGATCCACTGTT+TGG | - | chr7.2:15280632-15280651 | None:intergenic | 45.0% | |
| GACTTTGTCTTTCTCAGCTC+AGG | + | chr7.2:15279666-15279685 | MS.gene52724:intron | 45.0% | |
| GAGAACGTTGCAAGTTGTTG+AGG | - | chr7.2:15280036-15280055 | None:intergenic | 45.0% | |
| GCTGTATCGCTGTTCTTCAA+AGG | + | chr7.2:15279769-15279788 | MS.gene52724:CDS | 45.0% | |
| GTGGTTGTTACTACTTACCG+CGG | + | chr7.2:15280675-15280694 | MS.gene52724:CDS | 45.0% | |
| TACACATAGCTGCTCCCATT+TGG | - | chr7.2:15280205-15280224 | None:intergenic | 45.0% | |
| TAGCACCTCTTAGTGCAAGA+TGG | - | chr7.2:15280845-15280864 | None:intergenic | 45.0% | |
| TAGTACGAACCGTGTTGTCT+CGG | - | chr7.2:15280538-15280557 | None:intergenic | 45.0% | |
| TCAAAAGCTGCCTCCTTTCT+TGG | + | chr7.2:15279738-15279757 | MS.gene52724:CDS | 45.0% | |
| TCCTACAATCGGTACATCTC+CGG | - | chr7.2:15280457-15280476 | None:intergenic | 45.0% | |
| TGTCAGCGTAGAGAAACCAT+AGG | - | chr7.2:15279936-15279955 | None:intergenic | 45.0% | |
| TGTGAAGGTAAGAATTGGGG+TGG | + | chr7.2:15280339-15280358 | MS.gene52724:CDS | 45.0% | |
| TTTATCCACCAGATGGCTGA+TGG | + | chr7.2:15279337-15279356 | MS.gene52724:CDS | 45.0% | |
| ! | GAAAGGAGGCAGCTTTTGAA+AGG | - | chr7.2:15279737-15279756 | None:intergenic | 45.0% |
| ! | GGTGGCTTATATTGACTAGC+TGG | - | chr7.2:15281155-15281174 | None:intergenic | 45.0% |
| !! | AGTGGATCTTTTAGGCGTTG+AGG | + | chr7.2:15280635-15280654 | MS.gene52724:CDS | 45.0% |
| !! | CGTTGACTTTATCCACCAGA+TGG | + | chr7.2:15279330-15279349 | MS.gene52724:CDS | 45.0% |
| !! | TCTTGCACTAAGAGGTGCTA+CGG | + | chr7.2:15280845-15280864 | MS.gene52724:CDS | 45.0% |
| !! | TGTTGTTGGTGACCAAACAG+TGG | + | chr7.2:15280617-15280636 | MS.gene52724:CDS | 45.0% |
| !!! | GATCTTTTAGGCGTTGAGGT+TGG | + | chr7.2:15280639-15280658 | MS.gene52724:CDS | 45.0% |
| ACCGATGCCAAAGCAGTTGA+AGG | + | chr7.2:15280917-15280936 | MS.gene52724:CDS | 50.0% | |
| AGTACGAACCGTGTTGTCTC+GGG | - | chr7.2:15280537-15280556 | None:intergenic | 50.0% | |
| CATGTTCTCCATCAGCCATC+TGG | - | chr7.2:15279348-15279367 | None:intergenic | 50.0% | |
| GAAGAACAGCGATACAGCCT+CGG | - | chr7.2:15279767-15279786 | None:intergenic | 50.0% | |
| GATCGAAAGCTCCTTGCCTT+AGG | - | chr7.2:15281100-15281119 | None:intergenic | 50.0% | |
| GATGCAGGATGTTTCCTCCA+AGG | + | chr7.2:15279893-15279912 | MS.gene52724:intron | 50.0% | |
| GATTCCTAAGGCCACAGAGA+AGG | - | chr7.2:15280113-15280132 | None:intergenic | 50.0% | |
| GGAAACATCCTGCATCATGG+AGG | - | chr7.2:15279889-15279908 | None:intergenic | 50.0% | |
| GGAGGAAACATCCTGCATCA+TGG | - | chr7.2:15279892-15279911 | None:intergenic | 50.0% | |
| !! | CTTGCACTAAGAGGTGCTAC+GGG | + | chr7.2:15280846-15280865 | MS.gene52724:CDS | 50.0% |
| !! | GGAGATGTACCGATTGTAGG+AGG | + | chr7.2:15280456-15280475 | MS.gene52724:CDS | 50.0% |
| ACAGCCTCGGTGACCAAGAA+AGG | - | chr7.2:15279754-15279773 | None:intergenic | 55.0% | |
| CACAACCACCCGAGACAACA+CGG | + | chr7.2:15280526-15280545 | MS.gene52724:CDS | 55.0% | |
| GTTCTCCATCAGCCATCTGG+TGG | - | chr7.2:15279345-15279364 | None:intergenic | 55.0% | |
| TCCTAAGGCCACAGAGAAGG+TGG | - | chr7.2:15280110-15280129 | None:intergenic | 55.0% | |
| TGCAACGTTCTCTAGTCCCC+TGG | + | chr7.2:15280044-15280063 | MS.gene52724:CDS | 55.0% | |
| !! | GCCGGAGATGTACCGATTGT+AGG | + | chr7.2:15280453-15280472 | MS.gene52724:CDS | 55.0% |
| ACGAACCGTGTTGTCTCGGG+TGG | - | chr7.2:15280534-15280553 | None:intergenic | 60.0% | |
| GCCACCTTCTCTGTGGCCTT+AGG | + | chr7.2:15280106-15280125 | MS.gene52724:CDS | 60.0% | |
| GCCTCCTTTCTTGGTCACCG+AGG | + | chr7.2:15279747-15279766 | MS.gene52724:CDS | 60.0% | |
| GCCTCGGTGACCAAGAAAGG+AGG | - | chr7.2:15279751-15279770 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 15279136 | 15281250 | 15279136 | ID=MS.gene52724 |
| chr7.2 | mRNA | 15279136 | 15281250 | 15279136 | ID=MS.gene52724.t1;Parent=MS.gene52724 |
| chr7.2 | exon | 15279136 | 15279416 | 15279136 | ID=MS.gene52724.t1.exon1;Parent=MS.gene52724.t1 |
| chr7.2 | CDS | 15279136 | 15279416 | 15279136 | ID=cds.MS.gene52724.t1;Parent=MS.gene52724.t1 |
| chr7.2 | exon | 15279683 | 15279790 | 15279683 | ID=MS.gene52724.t1.exon2;Parent=MS.gene52724.t1 |
| chr7.2 | CDS | 15279683 | 15279790 | 15279683 | ID=cds.MS.gene52724.t1;Parent=MS.gene52724.t1 |
| chr7.2 | exon | 15279900 | 15281250 | 15279900 | ID=MS.gene52724.t1.exon3;Parent=MS.gene52724.t1 |
| chr7.2 | CDS | 15279900 | 15281250 | 15279900 | ID=cds.MS.gene52724.t1;Parent=MS.gene52724.t1 |
| Gene Sequence |
| Protein sequence |
