AlfalfaGEDB | MS.gene53825

M. sativa cultivar XinJiangDaYe / MS.gene53825

KEGG: -
GO: GO:0000166 GO:0003674 GO:0005488 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0036094 GO:0043167 GO:0043168 GO:0043531 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00931.25 PF13855.9 PF18052.4

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53825.t1	XP_013447653.1	94.2	939	53	1	1	939	1	938	0.00E+00	1796.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53825.t1	Q9SX38	36.7	956	484	19	3	939	1	854	5.3e-165	583.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53825.t1	A0A072TW48	94.2	939	53	1	1	939	1	938	0.0e+00	1796.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene53825	0.804686	1.92E-49	-1.69E-46
MS.gene04915	MS.gene53825	0.80762	4.62E-50	-1.69E-46
MS.gene04917	MS.gene53825	0.810968	8.85E-51	-1.69E-46
MS.gene049283	MS.gene53825	0.815476	9.07E-52	-1.69E-46
MS.gene049368	MS.gene53825	0.816071	6.68E-52	-1.69E-46
MS.gene049452	MS.gene53825	0.824558	7.56E-54	-1.69E-46
MS.gene049801	MS.gene53825	0.816031	6.82E-52	-1.69E-46
MS.gene049983	MS.gene53825	0.871191	8.25E-67	-1.69E-46
MS.gene050359	MS.gene53825	0.812178	4.83E-51	-1.69E-46
MS.gene050414	MS.gene53825	0.828236	1.01E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53825.t1	MTR_7g015770	95.101	939	45	1	1	939	1	938	0.0	1788
MS.gene53825.t1	MTR_2g038510	48.482	955	440	15	3	937	1	923	0.0	858
MS.gene53825.t1	MTR_5g021080	35.221	971	525	30	3	935	1	905	2.44e-152	474
MS.gene53825.t1	MTR_5g027910	31.893	972	562	29	3	935	1	911	1.72e-130	417
MS.gene53825.t1	MTR_5g027870	30.857	969	571	27	3	935	1	906	5.83e-121	391
MS.gene53825.t1	MTR_5g027860	30.394	964	578	23	3	935	1	902	6.23e-119	386
MS.gene53825.t1	MTR_4g073840	32.271	973	536	33	3	909	1	916	1.48e-117	382
MS.gene53825.t1	MTR_5g027900	29.515	969	582	23	3	935	1	904	7.15e-114	372
MS.gene53825.t1	MTR_5g027810	30.249	962	587	21	3	935	1	907	7.97e-114	372
MS.gene53825.t1	MTR_3g011390	29.478	977	587	27	3	933	1	921	2.79e-113	371

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene53825.t1	AT1G50180	36.792	954	486	19	3	939	1	854	0.0	564
MS.gene53825.t1	AT5G43470	35.954	954	545	22	3	939	1	905	2.79e-177	538
MS.gene53825.t1	AT5G43470	35.954	954	545	22	3	939	1	905	2.79e-177	538
MS.gene53825.t1	AT5G43470	35.954	954	545	22	3	939	1	905	2.79e-177	538
MS.gene53825.t1	AT5G43470	35.954	954	545	22	3	939	1	905	2.79e-177	538
MS.gene53825.t1	AT1G58390	37.251	953	532	22	3	939	1	903	5.76e-176	535
MS.gene53825.t1	AT1G58390	37.251	953	532	22	3	939	1	903	5.76e-176	535
MS.gene53825.t1	AT1G53350	36.172	951	545	21	3	939	1	903	7.97e-176	534
MS.gene53825.t1	AT5G48620	35.774	956	544	23	3	939	1	905	3.22e-174	530
MS.gene53825.t1	AT5G48620	35.774	956	544	23	3	939	1	905	3.22e-174	530

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Find 185 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAAATTAATTCAGTTG+TGG	0.535878	7.4:+83843187	MS.gene53825:CDS
AAAATGGTATGCTCAATAAA+TGG	0.328701	7.4:+83844398	MS.gene53825:CDS
AAAATTAGCTTATGATGCTG+AGG	0.600098	7.4:+83840729	MS.gene53825:CDS
AAACATGGTTTCAGTTGATA+AGG	0.380946	7.4:-83843123	None:intergenic
AAACTATCAATAAAGTAAGT+TGG	0.396521	7.4:+83843844	MS.gene53825:CDS
AAAGGAAACAATCAATGAAT+GGG	0.482096	7.4:+83842999	MS.gene53825:CDS
AAAGGCTTGCTTCATGAACC+AGG	0.462557	7.4:+83841459	MS.gene53825:CDS
AAAGTGTGCTGGTTTGCCTT+TGG	0.422720	7.4:+83842945	MS.gene53825:CDS
AAAGTTAACTTTGAAAGCTG+TGG	0.542306	7.4:-83844281	None:intergenic
AAATCATTCAAGATTAAACT+TGG	0.437439	7.4:+83844605	MS.gene53825:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAGATTTCCAACTTCTTT+AGG	-	chr7.4:83843732-83843751	None:intergenic	30.0%
AACCAAGTATTTCATGTAAC+AGG	-	chr7.4:83841694-83841713	None:intergenic	30.0%
AACTACAAACTGAACTAAAG+AGG	+	chr7.4:83840626-83840645	MS.gene53825:CDS	30.0%
ACAAATTCTTCCATCTTCAT+TGG	+	chr7.4:83843788-83843807	MS.gene53825:CDS	30.0%
ACATAAAGAAAGTTGTGGAA+TGG	+	chr7.4:83841016-83841035	MS.gene53825:CDS	30.0%
ACTGAAAAAGCTCAGAAAAT+TGG	+	chr7.4:83844040-83844059	MS.gene53825:CDS	30.0%
AGAAATGTAGAGTTGAAAGT+TGG	+	chr7.4:83843619-83843638	MS.gene53825:CDS	30.0%
AGAAATTGATGTGTAAAGGT+AGG	+	chr7.4:83841606-83841625	MS.gene53825:intron	30.0%
AGCTTTCAAAGTTAACTTTG+TGG	+	chr7.4:83844285-83844304	MS.gene53825:CDS	30.0%
ATAACCTCTTACCTAATAAG+AGG	+	chr7.4:83843039-83843058	MS.gene53825:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	83840523	83844688	83840523	ID=MS.gene53825
chr7.4	mRNA	83840523	83844688	83840523	ID=MS.gene53825.t1;Parent=MS.gene53825
chr7.4	exon	83840523	83841549	83840523	ID=MS.gene53825.t1.exon1;Parent=MS.gene53825.t1
chr7.4	CDS	83840523	83841549	83840523	ID=cds.MS.gene53825.t1;Parent=MS.gene53825.t1
chr7.4	exon	83842896	83844688	83842896	ID=MS.gene53825.t1.exon2;Parent=MS.gene53825.t1
chr7.4	CDS	83842896	83844688	83842896	ID=cds.MS.gene53825.t1;Parent=MS.gene53825.t1

Gene Sequence

>MS.gene53825

ATGTTAATGGTTGAGTCAGTTGTGTCCTTTACAATTGAAAGGCTTGCTGACCTCCTAATTGAAGAGGCCAATTTGTTAAGTGGGGTAAGTGACCAAATCAAGAAACTACAAACTGAACTAAAGAGGATGCAATGCTTCTTAAGGGATGCTGAGAGAAAGCAGGATGAAGGTGGCGAGATTATAAAGAATTGGATATCGGAGATCAGAAAATTAGCTTATGATGCTGAGGATGTGATTGAAACTTATGCCGTCAAAGTTTCATTTTCAGGAGCAATGACTCCTTTCTACAAACTAAGGCATGATCACAAAATTGGAAACAAGATTATATCTATTAATTCTCAAATAGCAGATCTTACAACAAGTTTACAAAAATATGGTTTGACTGCAACAACAAGAGAAAATGAAGAATCACACTTTGTGATTGAGACACAGAGACAGCTGAGATGGTCTTATTCTCATGTGATTGAAGAGGTCACTGTAGGGTTGGATAAGGACATAAAGAAAGTTGTGGAATGGCTACTAAATCATGACCAACATTGTCAAATGGTTTATATTTGTGGAATGGGCGGTCTAGGTAAAACAACACTTGCTAAAAATGTTTATCATCATAGTTCCATTAGGCGACACTTTGAGGGTTTTGCTTGGGCTTATATATCTCAAAAATGCAATAGAAGAGAGGTTTGGGAGGGAATCTTACTTCAGCTTACTACTTCCTCTTCCAAAGAAGAGAGAGATGAGATTAGGACCATGAGAGATGAAGAATTGGCAAAAAAGTTGTACAAAGTTCAACAAGAGAAAATGTGTTTGATCGTCTTGGATGACATATGGAGCAACGAGACTTGGGATATTTTAAGTCCAGCCTTTCCAACAAAAAATAAAAAGAGTAAGATGGTTTTTACATCACGAAATAAAGCCGTCTCATCACATGTAGATTCCAAAGGCTTGCTTCATGAACCAGGGTTCTTAAATGCAGAAGATAGTTGGACGTTGTTTCAGAAGAAAGCTTTTCCAACTAAAGATGATCCGGGTAATATACTTGAATCTTGAAAATATCGTTTTCATTTATGAACGAGAAGTAGTTAGAGAAATTGATGTGTAAAGGTAGGAAAAGTTGTTATAAGTATACACATTGATTGAGGATTAAAAAACATGAGTGATTAGTTCAATTCCTGTTACATGAAATACTTGGTTTTCCTTTCACCAAGTGTTTGTTTGGACTGATTTGTTTTTTCTTATATATTGTGATAAGCACTTGTGAGACTGTTGAGCTTTTGGAAACAACTTATAACATGTTCATAGGAAGTTTTCTGGTTATCTCCATAAGCTCCCGCGAATAGCGTATAAATTATGTGAACACGGTTTGAATTTATTTTATTTTTTGTTATAGAAACAAACTATACAGAAGCACTTATATGGTAAGTGTCTGTACTACAAACGCTAAGTTTAGTTTGAAACAAAACAGTTGCAGACTTCTAGCTCATCTCATTTCCTAAATATTCATGTAATAGCCTTTCCTTCTAGTATCACTAATAACTAATCATTGAGATATCTTTCTAACTTATTGATTACTAAAGCAGCATTCGAAGTTTTGACATGACTTTGATTTGCTCTTGTTGCTTTCTTCTTCAATATAACATCTAGATAAGGGGATTCAAAGAAACTAAAATTTTGCTAGAACACTATAAATAATGAGCTTAAAATGGAGTATGTATTAGACTAGCTCGTGTATTTTTATATACCATGTTAATATATATCTCAATCTTTTGCTTAGTTATGACTGAGTTGATTCTCACGAGTTAGAAAATTTGACTTGATTTGAAAATTTACCTTGTTGAAGAATTTATTGAGATTTGTAACAGGGTATGACATTAATTTAACAGTTTTCTAAAATTTACTTCATTGAAGAATTGACATTAATTCAATTGTGTTGAGCATATGGTTAATGAGTTGTAATACATGTTATATCAGTAACCATCCATTGAACATAATTAACCACATATTTAAATTGCGTTAACGATCAATATTGTTGTCGAATTTTGATTTCAAATTGTATATCAAAATATCATTTCTCTTAATTTATAAGACTCAATGGAGTCTACATGAGAGTAGCCAAGAACAAGAACTTTGAGCTTTTTGTCTCCTTTAGTTTTTACACCCTTACAAACATTCATGTTTTATTTTAAGTAACAATATTTAAGTTGATGTATTTGCAATACTTTAAACACTTCTCTTGTCTCCTTGACCTGCGTAATATTGGAGGGGTTAAAACTTTATGTTTGTTGTTTGCATGTATCTCTAGAAACAGTTCATGTATGCATAATTTTAATTTTTTTATTTTCATTTAACTTGAATATTATCTTGTACCTTTTTCAGAATTCAAAATTTGCAATGAGTTTGAAAGACTAGGCAGAGATATGGTTGCAAAGTGTGCTGGTTTGCCTTTGGCTATCATTGTACTTGGAGGACTTTTGGCTACAAAGGAAACAATCAATGAATGGGAAATGATACATAAACATATAACCTCTTACCTAATAAGAGGAGATGAACTTGAAAGACAGTCAAGATTAGCTGAGGTGTTGGATTTAAGTTACCACAACATGCCTTATCAACTGAAACCATGTTTTCTTTATTTAAGTCAATTTCCAGAAGACTTTGAGATACCAAAAAATAAATTAATTCAGTTGTGGATGGCAGAAGGTTTTGTTTCATCTCAATATGAGATTGAAAGGGATGAAAGATTGGAGGATGTCGCTGAGCGTTACCTTGGTAGCTTAATTAGCCGTTGCATGGTTCAAGTTGGTCAGATGGGGTCTACTGGAAAGATTAAAACTTGTCGGCTGCATGATTTAATGCGTGATATGTGTTTGTCAAAGGCTAGAAAAGAACATTTTCTTAGTGTTATTACCAGATCACAAAAAGATAGTAATAGCATTGATGATGTATCATCATCATCATCATCTAATCTATTACTAGATTCAAAAAAAACCGGCGGAGTTCGTAGGCTTACTCTTTTCTTGGATAAACATGTTGATAAATTGGTTCCACCCAATGAGCAAGTGAGTCAACATCTTAGATCCCTTGTATATTTCAATGATAAGAAATGTAGAGTTGAAAGTTGGAAGCTACTTAAAGCTGTTTTCGAGAACTTTAAATTACTTAGAGTTCTTGATCTTGAAGGAGTTAAGGGGTCAAAGGGACAATTATTGCCTAAAGAAGTTGGAAATCTGTTTTGGTTGAAGTTTTTGAGTTTGAAAAGGACTTGTATACAAATTCTTCCATCTTCATTGGGCAAATTGGAAAATCTGCAGAGCCTAAATTTGCAAACTATCAATAAAGTAAGTTGGGATTCAACAGTAGAAATTCCAAACATAATATGGAAGTTAAAACGGTTGAGACATTTATATCTTCCCAATTGGTGTGGAAATGTTCCTGGCATCCTGCAACTTGAAAATCTAATCAACTTACAGACACTAGTAAATTTTCCAGCCAGTAAATGCGACGTGAGTGATTTGTTAAAACTGAAAAAGCTCAGAAAATTGGTACTGAATGATCCAAGGTATTTCCAAAAGTTTTCCGAAAGTTTCACTCTTTGTAATCAAAAGTTGGAATGTCTGGAATCATTGTCCTTAAAAACTGATTTGCTTTCATTCCCTGATCAAGTAGTGGATGTTGAAAAATTAGTTCTAGGTTGTCCTTCACTTCACAAACTCCATGTAGAGGGGAGAATGGAAAGGCTTCCAGAAGCTCAACTATTTCCTCCACAGCTTTCAAAGTTAACTTTGTGGGGTTGTAAACTTGTGGAAGATCCGATGGTAACATTAGAGAAGCTTCCTAATTTGAAGTACCTCAGCGGTTGGGAAATGTATGTTGGAAAGAAAATGGTATGCTCAATAAATGGTTTTCCTAAACTGGAAGTTCTAGCTATCCGTGGCTTTTCTAACTTAGAAGAGTGGGTGGTAGAGAATCAAGCCATGTCTCATCTTTGTAGATTGAGCATATCTGATTGCAACAAGTTAAAGAGTGTTCCTGATGGACTAACATTTGTTGCTGGTCTAAGGGAGTTGGAGATCAGATGGATGCCTAAATCATTCAAGATTAAACTTGGAATTGATGGAGAGGATTATCACAAAGTCCAACATGTTCCATCCATTGTATTTTTCAACTAA

Protein sequence

>MS.gene53825.t1

MLMVESVVSFTIERLADLLIEEANLLSGVSDQIKKLQTELKRMQCFLRDAERKQDEGGEIIKNWISEIRKLAYDAEDVIETYAVKVSFSGAMTPFYKLRHDHKIGNKIISINSQIADLTTSLQKYGLTATTRENEESHFVIETQRQLRWSYSHVIEEVTVGLDKDIKKVVEWLLNHDQHCQMVYICGMGGLGKTTLAKNVYHHSSIRRHFEGFAWAYISQKCNRREVWEGILLQLTTSSSKEERDEIRTMRDEELAKKLYKVQQEKMCLIVLDDIWSNETWDILSPAFPTKNKKSKMVFTSRNKAVSSHVDSKGLLHEPGFLNAEDSWTLFQKKAFPTKDDPEFKICNEFERLGRDMVAKCAGLPLAIIVLGGLLATKETINEWEMIHKHITSYLIRGDELERQSRLAEVLDLSYHNMPYQLKPCFLYLSQFPEDFEIPKNKLIQLWMAEGFVSSQYEIERDERLEDVAERYLGSLISRCMVQVGQMGSTGKIKTCRLHDLMRDMCLSKARKEHFLSVITRSQKDSNSIDDVSSSSSSNLLLDSKKTGGVRRLTLFLDKHVDKLVPPNEQVSQHLRSLVYFNDKKCRVESWKLLKAVFENFKLLRVLDLEGVKGSKGQLLPKEVGNLFWLKFLSLKRTCIQILPSSLGKLENLQSLNLQTINKVSWDSTVEIPNIIWKLKRLRHLYLPNWCGNVPGILQLENLINLQTLVNFPASKCDVSDLLKLKKLRKLVLNDPRYFQKFSESFTLCNQKLECLESLSLKTDLLSFPDQVVDVEKLVLGCPSLHKLHVEGRMERLPEAQLFPPQLSKLTLWGCKLVEDPMVTLEKLPNLKYLSGWEMYVGKKMVCSINGFPKLEVLAIRGFSNLEEWVVENQAMSHLCRLSISDCNKLKSVPDGLTFVAGLRELEIRWMPKSFKIKLGIDGEDYHKVQHVPSIVFFN