Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55111.t1 | XP_003595073.1 | 92.7 | 717 | 36 | 2 | 1 | 711 | 1 | 707 | 0.00E+00 | 1132.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55111.t1 | P48785 | 57.2 | 439 | 179 | 3 | 140 | 570 | 101 | 538 | 5.5e-114 | 413.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55111.t1 | G7IG86 | 92.7 | 717 | 36 | 2 | 1 | 711 | 1 | 707 | 0.0e+00 | 1132.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene55111.t1 | TF | HB-PHD |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene55111 | 0.832538 | 8.93E-56 | -1.69E-46 |
| MS.gene049404 | MS.gene55111 | 0.803576 | 3.26E-49 | -1.69E-46 |
| MS.gene049435 | MS.gene55111 | 0.811478 | 6.86E-51 | -1.69E-46 |
| MS.gene049501 | MS.gene55111 | 0.850628 | 1.50E-60 | -1.69E-46 |
| MS.gene049647 | MS.gene55111 | 0.808882 | 2.49E-50 | -1.69E-46 |
| MS.gene049850 | MS.gene55111 | 0.818315 | 2.09E-52 | -1.69E-46 |
| MS.gene050226 | MS.gene55111 | 0.80646 | 8.14E-50 | -1.69E-46 |
| MS.gene050227 | MS.gene55111 | 0.801528 | 8.63E-49 | -1.69E-46 |
| MS.gene050228 | MS.gene55111 | 0.817779 | 2.76E-52 | -1.69E-46 |
| MS.gene050438 | MS.gene55111 | 0.830438 | 2.94E-55 | -1.69E-46 |
| MS.gene050442 | MS.gene55111 | 0.82765 | 1.39E-54 | -1.69E-46 |
| MS.gene050719 | MS.gene55111 | 0.818825 | 1.60E-52 | -1.69E-46 |
| MS.gene050721 | MS.gene55111 | 0.817856 | 2.65E-52 | -1.69E-46 |
| MS.gene050724 | MS.gene55111 | 0.807353 | 5.27E-50 | -1.69E-46 |
| MS.gene050780 | MS.gene55111 | 0.802259 | 6.11E-49 | -1.69E-46 |
| MS.gene050807 | MS.gene55111 | 0.813111 | 3.02E-51 | -1.69E-46 |
| MS.gene050815 | MS.gene55111 | 0.820665 | 6.08E-53 | -1.69E-46 |
| MS.gene050844 | MS.gene55111 | 0.831981 | 1.23E-55 | -1.69E-46 |
| MS.gene050959 | MS.gene55111 | 0.812424 | 4.27E-51 | -1.69E-46 |
| MS.gene051198 | MS.gene55111 | 0.80096 | 1.13E-48 | -1.69E-46 |
| MS.gene051247 | MS.gene55111 | 0.831054 | 2.07E-55 | -1.69E-46 |
| MS.gene051265 | MS.gene55111 | 0.804666 | 1.94E-49 | -1.69E-46 |
| MS.gene051388 | MS.gene55111 | 0.843899 | 1.05E-58 | -1.69E-46 |
| MS.gene051719 | MS.gene55111 | 0.801279 | 9.70E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene55111 | 0.828905 | 6.93E-55 | -1.69E-46 |
| MS.gene052012 | MS.gene55111 | 0.82329 | 1.50E-53 | -1.69E-46 |
| MS.gene052020 | MS.gene55111 | 0.85176 | 7.19E-61 | -1.69E-46 |
| MS.gene052519 | MS.gene55111 | 0.823999 | 1.02E-53 | -1.69E-46 |
| MS.gene052611 | MS.gene55111 | 0.834537 | 2.83E-56 | -1.69E-46 |
| MS.gene052612 | MS.gene55111 | 0.805281 | 1.44E-49 | -1.69E-46 |
| MS.gene052613 | MS.gene55111 | 0.804794 | 1.82E-49 | -1.69E-46 |
| MS.gene052665 | MS.gene55111 | 0.835235 | 1.89E-56 | -1.69E-46 |
| MS.gene052863 | MS.gene55111 | 0.851989 | 6.20E-61 | -1.69E-46 |
| MS.gene052896 | MS.gene55111 | 0.832324 | 1.01E-55 | -1.69E-46 |
| MS.gene053221 | MS.gene55111 | 0.846093 | 2.70E-59 | -1.69E-46 |
| MS.gene053226 | MS.gene55111 | 0.834272 | 3.30E-56 | -1.69E-46 |
| MS.gene053966 | MS.gene55111 | 0.821842 | 3.26E-53 | -1.69E-46 |
| MS.gene053967 | MS.gene55111 | 0.825694 | 4.08E-54 | -1.69E-46 |
| MS.gene054236 | MS.gene55111 | 0.826432 | 2.72E-54 | -1.69E-46 |
| MS.gene054467 | MS.gene55111 | 0.818859 | 1.57E-52 | -1.69E-46 |
| MS.gene054472 | MS.gene55111 | 0.810536 | 1.10E-50 | -1.69E-46 |
| MS.gene05462 | MS.gene55111 | 0.800501 | 1.40E-48 | -1.69E-46 |
| MS.gene05468 | MS.gene55111 | 0.813207 | 2.88E-51 | -1.69E-46 |
| MS.gene054775 | MS.gene55111 | 0.806284 | 8.86E-50 | -1.69E-46 |
| MS.gene055357 | MS.gene55111 | 0.809436 | 1.89E-50 | -1.69E-46 |
| MS.gene055363 | MS.gene55111 | 0.814512 | 1.48E-51 | -1.69E-46 |
| MS.gene055465 | MS.gene55111 | 0.813946 | 1.98E-51 | -1.69E-46 |
| MS.gene055466 | MS.gene55111 | 0.842837 | 2.03E-58 | -1.69E-46 |
| MS.gene055468 | MS.gene55111 | 0.8251 | 5.64E-54 | -1.69E-46 |
| MS.gene055512 | MS.gene55111 | 0.802458 | 5.56E-49 | -1.69E-46 |
| MS.gene055580 | MS.gene55111 | -0.80388 | 2.82E-49 | -1.69E-46 |
| MS.gene055608 | MS.gene55111 | 0.815804 | 7.66E-52 | -1.69E-46 |
| MS.gene055778 | MS.gene55111 | 0.802953 | 4.39E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene55111 | 0.81695 | 4.25E-52 | -1.69E-46 |
| MS.gene056173 | MS.gene55111 | 0.821133 | 4.75E-53 | -1.69E-46 |
| MS.gene056498 | MS.gene55111 | 0.800465 | 1.42E-48 | -1.69E-46 |
| MS.gene056506 | MS.gene55111 | 0.81315 | 2.96E-51 | -1.69E-46 |
| MS.gene056545 | MS.gene55111 | 0.817177 | 3.78E-52 | -1.69E-46 |
| MS.gene056553 | MS.gene55111 | 0.856767 | 2.57E-62 | -1.69E-46 |
| MS.gene057869 | MS.gene55111 | 0.825091 | 5.66E-54 | -1.69E-46 |
| MS.gene057915 | MS.gene55111 | 0.830762 | 2.45E-55 | -1.69E-46 |
| MS.gene058010 | MS.gene55111 | 0.807298 | 5.41E-50 | -1.69E-46 |
| MS.gene058084 | MS.gene55111 | 0.814303 | 1.65E-51 | -1.69E-46 |
| MS.gene058625 | MS.gene55111 | 0.813859 | 2.07E-51 | -1.69E-46 |
| MS.gene058636 | MS.gene55111 | 0.831411 | 1.69E-55 | -1.69E-46 |
| MS.gene058829 | MS.gene55111 | 0.812281 | 4.59E-51 | -1.69E-46 |
| MS.gene058906 | MS.gene55111 | 0.810168 | 1.32E-50 | -1.69E-46 |
| MS.gene058979 | MS.gene55111 | 0.810023 | 1.42E-50 | -1.69E-46 |
| MS.gene059220 | MS.gene55111 | 0.816401 | 5.64E-52 | -1.69E-46 |
| MS.gene05954 | MS.gene55111 | 0.802572 | 5.26E-49 | -1.69E-46 |
| MS.gene059789 | MS.gene55111 | 0.801373 | 9.29E-49 | -1.69E-46 |
| MS.gene059842 | MS.gene55111 | 0.821653 | 3.60E-53 | -1.69E-46 |
| MS.gene059937 | MS.gene55111 | 0.827557 | 1.46E-54 | -1.69E-46 |
| MS.gene060137 | MS.gene55111 | -0.800233 | 1.59E-48 | -1.69E-46 |
| MS.gene060322 | MS.gene55111 | 0.830118 | 3.52E-55 | -1.69E-46 |
| MS.gene060429 | MS.gene55111 | 0.812573 | 3.96E-51 | -1.69E-46 |
| MS.gene06052 | MS.gene55111 | 0.808052 | 3.74E-50 | -1.69E-46 |
| MS.gene060587 | MS.gene55111 | 0.80788 | 4.07E-50 | -1.69E-46 |
| MS.gene060803 | MS.gene55111 | 0.803722 | 3.04E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55111.t1 | MTR_2g038000 | 93.863 | 717 | 28 | 2 | 1 | 711 | 1 | 707 | 0.0 | 1315 |
| MS.gene55111.t1 | MTR_1g107015 | 47.210 | 233 | 115 | 3 | 139 | 371 | 245 | 469 | 5.14e-58 | 211 |
| MS.gene55111.t1 | MTR_1g107015 | 47.210 | 233 | 115 | 3 | 139 | 371 | 220 | 444 | 5.76e-58 | 211 |
| MS.gene55111.t1 | MTR_1g107015 | 47.210 | 233 | 115 | 3 | 139 | 371 | 320 | 544 | 1.53e-57 | 211 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55111.t1 | AT4G29940 | 58.118 | 425 | 158 | 5 | 136 | 546 | 97 | 515 | 1.07e-155 | 470 |
| MS.gene55111.t1 | AT4G29940 | 58.118 | 425 | 158 | 5 | 136 | 546 | 97 | 515 | 1.64e-155 | 470 |
| MS.gene55111.t1 | AT3G19510 | 46.774 | 248 | 122 | 3 | 123 | 369 | 158 | 396 | 7.91e-61 | 218 |
| MS.gene55111.t1 | AT3G19510 | 46.774 | 248 | 122 | 3 | 123 | 369 | 158 | 396 | 7.91e-61 | 218 |
Find 128 sgRNAs with CRISPR-Local
Find 267 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATCATTGTTCTTATTATT+TGG | 0.103798 | 2.2:+49637345 | None:intergenic |
| CCCAAGTGTGGAGGTATTTC+TGG | 0.146341 | 2.2:+49636422 | None:intergenic |
| AGGGCGTCCTTCACGGATTT+TGG | 0.158407 | 2.2:+49637098 | None:intergenic |
| AAGAACAATGATAGAATAAA+AGG | 0.187496 | 2.2:-49637336 | MS.gene55111:CDS |
| TCCAGCATGTGGTCTTTAAA+TGG | 0.227946 | 2.2:-49638110 | MS.gene55111:CDS |
| ATCCTTGGTTGGCACCTTAT+TGG | 0.235926 | 2.2:+49639858 | None:intergenic |
| CAAAACCAGCCTTGGTCTTC+AGG | 0.247836 | 2.2:+49638852 | None:intergenic |
| CCTCCACACTTGGGAGAAAA+TGG | 0.255233 | 2.2:-49636413 | MS.gene55111:CDS |
| TCAGTCTGTGTTTCTTCCTT+TGG | 0.278404 | 2.2:+49639944 | None:intergenic |
| AACCTGCCAAGTACTGTCTA+AGG | 0.296673 | 2.2:+49638764 | None:intergenic |
| TGGCTTTCTTCCTTCCTCTC+TGG | 0.343007 | 2.2:+49638191 | None:intergenic |
| TGACTGTAAGATAGAAATAT+TGG | 0.355208 | 2.2:-49638820 | MS.gene55111:CDS |
| GGATTATAGTCATCGTCTTC+AGG | 0.355847 | 2.2:+49638212 | None:intergenic |
| TTTCGAAAGGGCGTCCTTCA+CGG | 0.358216 | 2.2:+49637091 | None:intergenic |
| AGCTACTGATTCTTCCAATA+AGG | 0.369588 | 2.2:-49639872 | MS.gene55111:CDS |
| AGAATAAAAGGGAATTCTTC+AGG | 0.374854 | 2.2:-49637324 | MS.gene55111:CDS |
| TCAAATAAAAGATTGATTGT+TGG | 0.379038 | 2.2:-49639832 | MS.gene55111:CDS |
| AGATATTCCTCGTTCTTCTC+TGG | 0.381872 | 2.2:+49639626 | None:intergenic |
| CAGAGTATAATATCATTATC+TGG | 0.390452 | 2.2:+49639042 | None:intergenic |
| GAAGATGAAGATTGGGGTCC+TGG | 0.398942 | 2.2:-49637444 | MS.gene55111:CDS |
| AGATTGAAGCAAAGATTAAC+TGG | 0.399258 | 2.2:-49635529 | MS.gene55111:CDS |
| GGACGCCCTTTCGAAAGAAA+TGG | 0.401279 | 2.2:-49637084 | MS.gene55111:CDS |
| CTCCAGCGTAAGCATCTATA+AGG | 0.404399 | 2.2:+49639578 | None:intergenic |
| AAGAAGTGTGAAAATGTTAC+TGG | 0.405838 | 2.2:-49636491 | MS.gene55111:CDS |
| ATGTTCCTATAGCTGAGTTA+AGG | 0.407231 | 2.2:-49635444 | MS.gene55111:CDS |
| AAACTTCTCTTAATAATGAT+AGG | 0.417638 | 2.2:-49639759 | MS.gene55111:CDS |
| AGTTCAGTTGGTAGTATTGA+AGG | 0.418881 | 2.2:-49639240 | MS.gene55111:CDS |
| CACATAGATTCTGATGAATC+CGG | 0.421682 | 2.2:-49638035 | MS.gene55111:CDS |
| CCGTGATGCCATTCACCAAC+TGG | 0.421979 | 2.2:-49639271 | MS.gene55111:CDS |
| GAGATGTCTTGATCCTCCTT+TGG | 0.422829 | 2.2:-49638989 | MS.gene55111:CDS |
| AGTGAGTGAAGATGAAGATT+GGG | 0.435286 | 2.2:-49637451 | MS.gene55111:CDS |
| CCCCTTAGACAGTACTTGGC+AGG | 0.439188 | 2.2:-49638766 | MS.gene55111:intron |
| ATAGGAACATACATAATAGA+TGG | 0.443496 | 2.2:+49635457 | None:intergenic |
| CGATAATGCAGGTTAACAAA+TGG | 0.446754 | 2.2:-49636883 | MS.gene55111:intron |
| ACATGTTCCTTTGTGTTACT+CGG | 0.451425 | 2.2:+49640015 | None:intergenic |
| TGTTCCTATAGCTGAGTTAA+GGG | 0.455270 | 2.2:-49635443 | MS.gene55111:CDS |
| TAATGAAACTATTGCAAGAA+AGG | 0.457497 | 2.2:-49635642 | MS.gene55111:CDS |
| AGACTCCGAGGCAGCAGAGT+TGG | 0.457827 | 2.2:-49635590 | MS.gene55111:CDS |
| AAGTGAGTGAAGATGAAGAT+TGG | 0.458660 | 2.2:-49637452 | MS.gene55111:CDS |
| AGGCAACAAACGCGCATCTT+GGG | 0.460252 | 2.2:-49638797 | MS.gene55111:CDS |
| GTTCAAAATTGCAGATCAAA+GGG | 0.463923 | 2.2:-49635505 | MS.gene55111:CDS |
| GAGGCAACAAACGCGCATCT+TGG | 0.466032 | 2.2:-49638798 | MS.gene55111:CDS |
| AAATTCCAACTCTGCTGCCT+CGG | 0.470562 | 2.2:+49635585 | None:intergenic |
| CTGGATTCTCTTAGTTCAGT+TGG | 0.473153 | 2.2:-49639252 | MS.gene55111:CDS |
| ATTTCCCCTTAGACAGTACT+TGG | 0.477866 | 2.2:-49638770 | MS.gene55111:CDS |
| AAAGTCTACATAAAACTGAT+AGG | 0.478611 | 2.2:-49639807 | MS.gene55111:CDS |
| TTCCTCCTGAAGACCAAGGC+TGG | 0.484945 | 2.2:-49638857 | MS.gene55111:CDS |
| CAAGTCCCATTTCTTTCGAA+AGG | 0.486339 | 2.2:+49637078 | None:intergenic |
| TATAGCTGAGTTAAGGGAAA+AGG | 0.488966 | 2.2:-49635437 | MS.gene55111:CDS |
| AGAACAATGATAGAATAAAA+GGG | 0.492512 | 2.2:-49637335 | MS.gene55111:CDS |
| GACGCCCTTTCGAAAGAAAT+GGG | 0.493793 | 2.2:-49637083 | MS.gene55111:CDS |
| AGTAATGCAGCATCGCCGTC+AGG | 0.494282 | 2.2:+49638266 | None:intergenic |
| ACCAGAAATACCTCCACACT+TGG | 0.495132 | 2.2:-49636423 | MS.gene55111:CDS |
| AAGTCCCATTTCTTTCGAAA+GGG | 0.495232 | 2.2:+49637079 | None:intergenic |
| CTTCTGTGTTGATGCCACCA+TGG | 0.498525 | 2.2:+49638171 | None:intergenic |
| TACTAAATCAAGAAGAAGAA+TGG | 0.501022 | 2.2:-49638247 | MS.gene55111:CDS |
| AGTTCAAAATTGCAGATCAA+AGG | 0.506042 | 2.2:-49635506 | MS.gene55111:CDS |
| TTATTTGAAGAATCCTTGGT+TGG | 0.511651 | 2.2:+49639847 | None:intergenic |
| ACGACCACATGCTATTTCCC+CGG | 0.515781 | 2.2:+49638016 | None:intergenic |
| GTCACAGTCGAGAGAAGATT+AGG | 0.517689 | 2.2:-49639350 | MS.gene55111:intron |
| TTCTACATCACAACATGTGC+AGG | 0.518102 | 2.2:-49636567 | MS.gene55111:CDS |
| CATGGCACTTAAAATGAGAA+AGG | 0.518506 | 2.2:-49636843 | MS.gene55111:intron |
| TCCATTTAAAGACCACATGC+TGG | 0.518896 | 2.2:+49638109 | None:intergenic |
| AAGAGAATCCAGTTGGTGAA+TGG | 0.519329 | 2.2:+49639263 | None:intergenic |
| GGTCGTTAGAATAATATTCA+AGG | 0.522036 | 2.2:+49638057 | None:intergenic |
| AGAGAAGATTAGGCCAGAAA+AGG | 0.525646 | 2.2:-49639340 | MS.gene55111:CDS |
| AAGGAGGATCAAGACATCTC+TGG | 0.528780 | 2.2:+49638992 | None:intergenic |
| ACATAGATTCTGATGAATCC+GGG | 0.537290 | 2.2:-49638034 | MS.gene55111:CDS |
| ATAGATGCTTACGCTGGAGA+AGG | 0.541218 | 2.2:-49639574 | MS.gene55111:CDS |
| AAAGGAACATGTCAAGTTGA+AGG | 0.541741 | 2.2:-49640004 | MS.gene55111:CDS |
| GGTTCTGTCATTGCTACAGA+TGG | 0.542741 | 2.2:-49639219 | MS.gene55111:CDS |
| ACCTGCCAAGTACTGTCTAA+GGG | 0.543897 | 2.2:+49638765 | None:intergenic |
| AATACTTGCAAAACCAGCCT+TGG | 0.554312 | 2.2:+49638844 | None:intergenic |
| ATGCTTACGCTGGAGAAGGT+TGG | 0.555448 | 2.2:-49639570 | MS.gene55111:CDS |
| GAATGTTCTATGTTAGATGA+AGG | 0.561374 | 2.2:-49638086 | MS.gene55111:CDS |
| GAGAAGAGAAAAGGAGTCTG+AGG | 0.568921 | 2.2:-49637412 | MS.gene55111:CDS |
| TCTTCACTCACTTGTTCACA+AGG | 0.570005 | 2.2:+49637462 | None:intergenic |
| TCTCTTAATAATGATAGGAA+AGG | 0.570339 | 2.2:-49639754 | MS.gene55111:CDS |
| TATTCCTCGTTCTTCTCTGG+AGG | 0.580060 | 2.2:+49639629 | None:intergenic |
| AACATCATCACTGACCTCCA+TGG | 0.580335 | 2.2:+49635669 | None:intergenic |
| TGACTATAATCCAGAGAGGA+AGG | 0.581091 | 2.2:-49638201 | MS.gene55111:CDS |
| GGGAAATAGCATGTGGTCGT+AGG | 0.581992 | 2.2:-49638013 | MS.gene55111:CDS |
| AGGAAAGGTGAGATAGATGT+TGG | 0.583618 | 2.2:-49639739 | MS.gene55111:CDS |
| ACAACATGTGCAGGAAGAAG+AGG | 0.585587 | 2.2:-49636558 | MS.gene55111:CDS |
| AATGGGACTTGATGCTGCAA+AGG | 0.589378 | 2.2:-49637066 | MS.gene55111:intron |
| AATGATATTATACTCTGTGA+TGG | 0.590683 | 2.2:-49639036 | MS.gene55111:CDS |
| TTTGTTTAGCTTCAAGAAGG+AGG | 0.591319 | 2.2:-49636629 | MS.gene55111:intron |
| CAAGTAGCACAAAACACCAA+AGG | 0.591492 | 2.2:-49639960 | MS.gene55111:CDS |
| CAAGTAGTTCTTCCAGCATG+TGG | 0.596343 | 2.2:-49638121 | MS.gene55111:CDS |
| TTCCAATAAGGTGCCAACCA+AGG | 0.598203 | 2.2:-49639860 | MS.gene55111:CDS |
| CTGTAAGATAGAAATATTGG+AGG | 0.603472 | 2.2:-49638817 | MS.gene55111:CDS |
| CCAGTTGGTGAATGGCATCA+CGG | 0.605629 | 2.2:+49639271 | None:intergenic |
| AAATCAAAATCTCATAAACT+CGG | 0.606698 | 2.2:-49639922 | MS.gene55111:CDS |
| GATAGATGTTGGTGATCAAG+AGG | 0.610740 | 2.2:-49639728 | MS.gene55111:CDS |
| TACGCTGGAGAAGGTTGGAA+AGG | 0.611602 | 2.2:-49639565 | MS.gene55111:CDS |
| CATGGTGGCATCAACACAGA+AGG | 0.612139 | 2.2:-49638170 | MS.gene55111:CDS |
| AACCTTATAGATGCTTACGC+TGG | 0.614260 | 2.2:-49639580 | MS.gene55111:CDS |
| GAAGAAGCTGCTATTCCTGA+CGG | 0.614571 | 2.2:-49638281 | MS.gene55111:CDS |
| TATCACTTCTAAGAACTCAA+AGG | 0.617285 | 2.2:-49636591 | MS.gene55111:CDS |
| CGGAGGTTGCACAAATGTGT+CGG | 0.617900 | 2.2:-49639902 | MS.gene55111:CDS |
| CTGAACTAAGAGAATCCAGT+TGG | 0.618760 | 2.2:+49639256 | None:intergenic |
| CTGTCTTCAGTCTCCAAAGG+AGG | 0.618854 | 2.2:+49638976 | None:intergenic |
| TCACTGTCTTCAGTCTCCAA+AGG | 0.619248 | 2.2:+49638973 | None:intergenic |
| CGGATTCATCAGAATCTATG+TGG | 0.622262 | 2.2:+49638036 | None:intergenic |
| AGGAATTCAACAAAGATACA+AGG | 0.629477 | 2.2:-49639787 | MS.gene55111:CDS |
| CCTGCCAAGTACTGTCTAAG+GGG | 0.632462 | 2.2:+49638766 | None:intergenic |
| GAGAGGAAGGAAGAAAGCCA+TGG | 0.637015 | 2.2:-49638188 | MS.gene55111:CDS |
| ACTGAGAAGTTAAATAACCA+AGG | 0.637280 | 2.2:-49640048 | MS.gene55111:CDS |
| CTTGGGAGAAAATGGCAACA+AGG | 0.637413 | 2.2:-49636405 | MS.gene55111:intron |
| TCATGTGAAAACCTAAAACA+AGG | 0.637563 | 2.2:+49637291 | None:intergenic |
| TCGTCTTCAGGATCATCTGA+CGG | 0.640667 | 2.2:+49638224 | None:intergenic |
| CCAGAAATACCTCCACACTT+GGG | 0.646657 | 2.2:-49636422 | MS.gene55111:CDS |
| GAGAAGGTTGGAAAGGTCAG+AGG | 0.649501 | 2.2:-49639558 | MS.gene55111:intron |
| AGGAAGGAAGAAAGCCATGG+TGG | 0.650653 | 2.2:-49638185 | MS.gene55111:CDS |
| GTGAGTGAAGATGAAGATTG+GGG | 0.652036 | 2.2:-49637450 | MS.gene55111:CDS |
| AACCAGCCTTGGTCTTCAGG+AGG | 0.652976 | 2.2:+49638855 | None:intergenic |
| CATAGATTCTGATGAATCCG+GGG | 0.669012 | 2.2:-49638033 | MS.gene55111:CDS |
| TACAAAACCGAGTAACACAA+AGG | 0.669844 | 2.2:-49640022 | MS.gene55111:CDS |
| GCTTCCTCCAAAATCCGTGA+AGG | 0.670380 | 2.2:-49637105 | MS.gene55111:CDS |
| GCAGTTCCTCCTGAAGACCA+AGG | 0.671156 | 2.2:-49638861 | MS.gene55111:intron |
| TCACTCACTTGTTCACAAGG+TGG | 0.675741 | 2.2:+49637465 | None:intergenic |
| TGCATTTGAAGGAGACTCCG+AGG | 0.681549 | 2.2:-49635602 | MS.gene55111:CDS |
| TCAAAATCTCATAAACTCGG+AGG | 0.684427 | 2.2:-49639919 | MS.gene55111:CDS |
| TTATCTTCAGGATTCCATGG+AGG | 0.700522 | 2.2:-49635683 | MS.gene55111:intron |
| GAATCCGGGGAAATAGCATG+TGG | 0.711313 | 2.2:-49638020 | MS.gene55111:CDS |
| AATTCAACAAAGATACAAGG+AGG | 0.723347 | 2.2:-49639784 | MS.gene55111:CDS |
| ACGATGACTATAATCCAGAG+AGG | 0.733914 | 2.2:-49638205 | MS.gene55111:CDS |
| TACGCCTCCAGAGAAGAACG+AGG | 0.795398 | 2.2:-49639633 | MS.gene55111:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATGATCATATAAATAA+AGG | - | chr2.2:49637643-49637662 | MS.gene55111:intron | 10.0% |
| !!! | GAAAAAACATTTATTATTTT+TGG | + | chr2.2:49637159-49637178 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTACATTTAAC+AGG | + | chr2.2:49639569-49639588 | None:intergenic | 10.0% |
| !! | GTTAGATCATTAAAAATATT+AGG | + | chr2.2:49637012-49637031 | None:intergenic | 15.0% |
| !! | TAATTAACAATTCTTACAAA+AGG | + | chr2.2:49638727-49638746 | None:intergenic | 15.0% |
| !!! | TAGTTTTAAATCCTATAATA+AGG | - | chr2.2:49638762-49638781 | MS.gene55111:intron | 15.0% |
| !!! | TTAATAAATTGTTTTGTTCT+TGG | - | chr2.2:49638804-49638823 | MS.gene55111:CDS | 15.0% |
| !!! | TTTAAATATTTGTTTTCAGT+TGG | + | chr2.2:49638288-49638307 | None:intergenic | 15.0% |
| !!! | TTTGTAAAAAAACTTTTACA+CGG | - | chr2.2:49636901-49636920 | MS.gene55111:intron | 15.0% |
| !!! | TTTTATAATTTATCTTGAAG+AGG | - | chr2.2:49637822-49637841 | MS.gene55111:intron | 15.0% |
| !! | AAAAATTAAGGATGTATTCA+AGG | - | chr2.2:49637183-49637202 | MS.gene55111:intron | 20.0% |
| !! | AAACTTCTCTTAATAATGAT+AGG | - | chr2.2:49635727-49635746 | MS.gene55111:intron | 20.0% |
| !! | AAATCAAAATCTCATAAACT+CGG | - | chr2.2:49635564-49635583 | MS.gene55111:CDS | 20.0% |
| !! | AAGAACAATGATAGAATAAA+AGG | - | chr2.2:49638150-49638169 | MS.gene55111:CDS | 20.0% |
| !! | AGAACAATGATAGAATAAAA+GGG | - | chr2.2:49638151-49638170 | MS.gene55111:CDS | 20.0% |
| !! | CTATCATTGTTCTTATTATT+TGG | + | chr2.2:49638144-49638163 | None:intergenic | 20.0% |
| !! | TAATAACTAACAATTCAAGA+AGG | + | chr2.2:49636050-49636069 | None:intergenic | 20.0% |
| !! | TCAAATAAAAGATTGATTGT+TGG | - | chr2.2:49635654-49635673 | MS.gene55111:CDS | 20.0% |
| !!! | GTTTTTTCTGTCAAAAATTA+AGG | - | chr2.2:49637171-49637190 | MS.gene55111:intron | 20.0% |
| !!! | TTATGAAAATAAGTTGAAAC+CGG | - | chr2.2:49637845-49637864 | MS.gene55111:intron | 20.0% |
| !!! | TTTGTTTTATCTGTTGTTAT+AGG | + | chr2.2:49637744-49637763 | None:intergenic | 20.0% |
| ! | AAAATATTAGGACCAATAGA+AGG | + | chr2.2:49637000-49637019 | None:intergenic | 25.0% |
| ! | AAAGTCTACATAAAACTGAT+AGG | - | chr2.2:49635679-49635698 | MS.gene55111:intron | 25.0% |
| ! | AATGATATTATACTCTGTGA+TGG | - | chr2.2:49636450-49636469 | MS.gene55111:CDS | 25.0% |
| ! | ATAGGAACATACATAATAGA+TGG | + | chr2.2:49640032-49640051 | None:intergenic | 25.0% |
| ! | ATATTCAAAAACGTAAGAGA+AGG | - | chr2.2:49635784-49635803 | MS.gene55111:intron | 25.0% |
| ! | ATCAGTTAATCATAAACTGT+TGG | + | chr2.2:49636881-49636900 | None:intergenic | 25.0% |
| ! | CAGAGTATAATATCATTATC+TGG | + | chr2.2:49636447-49636466 | None:intergenic | 25.0% |
| ! | CTCATAAAAATAGCAATACA+GGG | + | chr2.2:49636341-49636360 | None:intergenic | 25.0% |
| ! | CTTAAAAGTCATGCAAATAA+TGG | + | chr2.2:49636825-49636844 | None:intergenic | 25.0% |
| ! | GAAGTAAAAATCTGAAGATT+TGG | + | chr2.2:49636978-49636997 | None:intergenic | 25.0% |
| ! | GAAGTGAAAATCAAAATACT+TGG | + | chr2.2:49637125-49637144 | None:intergenic | 25.0% |
| ! | TAATGAAACTATTGCAAGAA+AGG | - | chr2.2:49639844-49639863 | MS.gene55111:CDS | 25.0% |
| ! | TACTAAATCAAGAAGAAGAA+TGG | - | chr2.2:49637239-49637258 | MS.gene55111:intron | 25.0% |
| ! | TCAAATAAGTTAATCCAAAC+CGG | - | chr2.2:49637944-49637963 | MS.gene55111:intron | 25.0% |
| ! | TCTCATAAAAATAGCAATAC+AGG | + | chr2.2:49636342-49636361 | None:intergenic | 25.0% |
| ! | TCTCTTAATAATGATAGGAA+AGG | - | chr2.2:49635732-49635751 | MS.gene55111:intron | 25.0% |
| ! | TGAAATCTTTAACAGTCATA+CGG | - | chr2.2:49637583-49637602 | MS.gene55111:intron | 25.0% |
| ! | TGACTGTAAGATAGAAATAT+TGG | - | chr2.2:49636666-49636685 | MS.gene55111:intron | 25.0% |
| ! | TTATCGAACATGTTAATAAC+AGG | + | chr2.2:49638589-49638608 | None:intergenic | 25.0% |
| !! | AGATTTTTACTTCCTTCTAT+TGG | - | chr2.2:49636985-49637004 | MS.gene55111:intron | 25.0% |
| !! | ATCTCATTCTATGGATTAAA+AGG | + | chr2.2:49636019-49636038 | None:intergenic | 25.0% |
| !! | CATTTCAATGTTTTATCTTC+AGG | - | chr2.2:49639791-49639810 | MS.gene55111:CDS | 25.0% |
| !!! | ATTATTTTTGGACCAATAGA+AGG | + | chr2.2:49637147-49637166 | None:intergenic | 25.0% |
| !!! | ATTTAAGTTCCTATCTTTTC+AGG | - | chr2.2:49637978-49637997 | MS.gene55111:CDS | 25.0% |
| !!! | ATTTGCATGACTTTTAAGTT+AGG | - | chr2.2:49636827-49636846 | MS.gene55111:intron | 25.0% |
| !!! | GTATTGCTATTTTTATGAGA+TGG | - | chr2.2:49636342-49636361 | MS.gene55111:intron | 25.0% |
| !!! | TCTTTTATTTGAAGAATCCT+TGG | + | chr2.2:49635646-49635665 | None:intergenic | 25.0% |
| !!! | TGTTGGTTTGACAAAAATAA+AGG | - | chr2.2:49639329-49639348 | MS.gene55111:CDS | 25.0% |
| AAGTACTTGTGATACTGTTT+GGG | + | chr2.2:49637908-49637927 | None:intergenic | 30.0% | |
| AATGCACAGAATATGACATT+TGG | + | chr2.2:49639122-49639141 | None:intergenic | 30.0% | |
| AATTCAACAAAGATACAAGG+AGG | - | chr2.2:49635702-49635721 | MS.gene55111:intron | 30.0% | |
| AATTTGCACAGAATATCTAG+AGG | + | chr2.2:49636404-49636423 | None:intergenic | 30.0% | |
| ACTGAGAAGTTAAATAACCA+AGG | - | chr2.2:49635438-49635457 | MS.gene55111:CDS | 30.0% | |
| AGAATAAAAGGGAATTCTTC+AGG | - | chr2.2:49638162-49638181 | MS.gene55111:CDS | 30.0% | |
| AGATTGAAGCAAAGATTAAC+TGG | - | chr2.2:49639957-49639976 | MS.gene55111:CDS | 30.0% | |
| AGGAATTCAACAAAGATACA+AGG | - | chr2.2:49635699-49635718 | MS.gene55111:intron | 30.0% | |
| AGTTCAAAATTGCAGATCAA+AGG | - | chr2.2:49639980-49639999 | MS.gene55111:CDS | 30.0% | |
| ATTAACATGTTCGATAATGC+AGG | - | chr2.2:49638592-49638611 | MS.gene55111:intron | 30.0% | |
| ATTGCAAGAAAGGAAAAAGA+AGG | - | chr2.2:49639854-49639873 | MS.gene55111:CDS | 30.0% | |
| CAAACATTTCCTGAAAAGAT+AGG | + | chr2.2:49637990-49638009 | None:intergenic | 30.0% | |
| CAATAAACTTTGACACATGT+GGG | - | chr2.2:49638833-49638852 | MS.gene55111:CDS | 30.0% | |
| CATGTTAATAACAGGAAGTT+TGG | + | chr2.2:49638581-49638600 | None:intergenic | 30.0% | |
| CCACGAAAACTTAAGTTATT+AGG | + | chr2.2:49639758-49639777 | None:intergenic | 30.0% | |
| CTGTAAGATAGAAATATTGG+AGG | - | chr2.2:49636669-49636688 | MS.gene55111:intron | 30.0% | |
| GAATGTTCTATGTTAGATGA+AGG | - | chr2.2:49637400-49637419 | MS.gene55111:CDS | 30.0% | |
| GACTATATCATTGTCAAGTT+TGG | + | chr2.2:49639408-49639427 | None:intergenic | 30.0% | |
| GAGATGGATGCAAATTTATA+GGG | + | chr2.2:49638499-49638518 | None:intergenic | 30.0% | |
| GGTCGTTAGAATAATATTCA+AGG | + | chr2.2:49637432-49637451 | None:intergenic | 30.0% | |
| GTTCAAAATTGCAGATCAAA+GGG | - | chr2.2:49639981-49640000 | MS.gene55111:CDS | 30.0% | |
| GTTCAATCTTTAATGTGACA+TGG | - | chr2.2:49636564-49636583 | MS.gene55111:CDS | 30.0% | |
| TAAGTACTTGTGATACTGTT+TGG | + | chr2.2:49637909-49637928 | None:intergenic | 30.0% | |
| TAGGAACTTAAATGAAACCT+TGG | + | chr2.2:49637971-49637990 | None:intergenic | 30.0% | |
| TCATGTGAAAACCTAAAACA+AGG | + | chr2.2:49638198-49638217 | None:intergenic | 30.0% | |
| TTATTTGAAGAATCCTTGGT+TGG | + | chr2.2:49635642-49635661 | None:intergenic | 30.0% | |
| ! | AACATTTTCACACTTCTTCA+AGG | + | chr2.2:49638993-49639012 | None:intergenic | 30.0% |
| ! | AAGAAGTGTGAAAATGTTAC+TGG | - | chr2.2:49638995-49639014 | MS.gene55111:CDS | 30.0% |
| ! | AAGGTAAGTTTTGCATTTGA+AGG | - | chr2.2:49639873-49639892 | MS.gene55111:CDS | 30.0% |
| ! | ACAGTAATTTTTGCGATCTT+CGG | + | chr2.2:49638962-49638981 | None:intergenic | 30.0% |
| ! | ACATTTTCACACTTCTTCAA+GGG | + | chr2.2:49638992-49639011 | None:intergenic | 30.0% |
| ! | ATGATCAGATGCCTTATTAT+AGG | + | chr2.2:49638776-49638795 | None:intergenic | 30.0% |
| ! | CCTAATAACTTAAGTTTTCG+TGG | - | chr2.2:49639755-49639774 | MS.gene55111:CDS | 30.0% |
| ! | TATCACTTCTAAGAACTCAA+AGG | - | chr2.2:49638895-49638914 | MS.gene55111:intron | 30.0% |
| ! | TGATTTTCACTTCCTTCTAT+TGG | - | chr2.2:49637132-49637151 | MS.gene55111:CDS | 30.0% |
| !! | CTATCTTTTCAGGAAATGTT+TGG | - | chr2.2:49637988-49638007 | MS.gene55111:CDS | 30.0% |
| !! | GAGTTATTTGCATTGCTTTT+TGG | - | chr2.2:49638523-49638542 | MS.gene55111:intron | 30.0% |
| !! | TTTTCAGGAAATGTTTGGAA+AGG | - | chr2.2:49637993-49638012 | MS.gene55111:CDS | 30.0% |
| !!! | GCATAAAAAGACCTTGTTTT+AGG | - | chr2.2:49638184-49638203 | MS.gene55111:CDS | 30.0% |
| AAAAAGACGGAGAAGAGAAA+AGG | - | chr2.2:49638065-49638084 | MS.gene55111:CDS | 35.0% | |
| AAGCAATGCAAATAACTCTG+CGG | + | chr2.2:49638521-49638540 | None:intergenic | 35.0% | |
| AAGTCCCATTTCTTTCGAAA+GGG | + | chr2.2:49638410-49638429 | None:intergenic | 35.0% | |
| AAGTGAGTGAAGATGAAGAT+TGG | - | chr2.2:49638034-49638053 | MS.gene55111:CDS | 35.0% | |
| ACATAGATTCTGATGAATCC+GGG | - | chr2.2:49637452-49637471 | MS.gene55111:CDS | 35.0% | |
| ACTTAAATGAAACCTTGGTC+CGG | + | chr2.2:49637966-49637985 | None:intergenic | 35.0% | |
| AGTGAGTGAAGATGAAGATT+GGG | - | chr2.2:49638035-49638054 | MS.gene55111:CDS | 35.0% | |
| ATATAAGCTATAAGCTGCGT+TGG | - | chr2.2:49637778-49637797 | MS.gene55111:intron | 35.0% | |
| ATGTTCCTATAGCTGAGTTA+AGG | - | chr2.2:49640042-49640061 | MS.gene55111:CDS | 35.0% | |
| ATTTGGTTGTGCATGAGAAA+AGG | + | chr2.2:49636961-49636980 | None:intergenic | 35.0% | |
| CACATAGATTCTGATGAATC+CGG | - | chr2.2:49637451-49637470 | MS.gene55111:CDS | 35.0% | |
| CATGGCACTTAAAATGAGAA+AGG | - | chr2.2:49638643-49638662 | MS.gene55111:intron | 35.0% | |
| CGATAATGCAGGTTAACAAA+TGG | - | chr2.2:49638603-49638622 | MS.gene55111:intron | 35.0% | |
| GAAGATCGCAAAAATTACTG+TGG | - | chr2.2:49638961-49638980 | MS.gene55111:intron | 35.0% | |
| GACTGGTATCGTAAAATTGT+TGG | - | chr2.2:49639257-49639276 | MS.gene55111:CDS | 35.0% | |
| GACTGTAACTTCTACTTTCA+AGG | - | chr2.2:49639454-49639473 | MS.gene55111:intron | 35.0% | |
| GCAATAAACTTTGACACATG+TGG | - | chr2.2:49638832-49638851 | MS.gene55111:CDS | 35.0% | |
| GCTTCTGGCAAATTTCATAA+TGG | + | chr2.2:49638336-49638355 | None:intergenic | 35.0% | |
| GGAGATGGATGCAAATTTAT+AGG | + | chr2.2:49638500-49638519 | None:intergenic | 35.0% | |
| GTTCAAAAATGCACGTTACA+TGG | - | chr2.2:49638625-49638644 | MS.gene55111:intron | 35.0% | |
| TAAGTGCCTATTAGCATAAG+CGG | - | chr2.2:49637687-49637706 | MS.gene55111:intron | 35.0% | |
| TACAAAACCGAGTAACACAA+AGG | - | chr2.2:49635464-49635483 | MS.gene55111:CDS | 35.0% | |
| TATAGCTGAGTTAAGGGAAA+AGG | - | chr2.2:49640049-49640068 | MS.gene55111:CDS | 35.0% | |
| TCAAAATCTCATAAACTCGG+AGG | - | chr2.2:49635567-49635586 | MS.gene55111:CDS | 35.0% | |
| TGATAACCGCTTATGCTAAT+AGG | + | chr2.2:49637696-49637715 | None:intergenic | 35.0% | |
| TGTTCCTATAGCTGAGTTAA+GGG | - | chr2.2:49640043-49640062 | MS.gene55111:CDS | 35.0% | |
| TTTGGTTGTGCATGAGAAAA+GGG | + | chr2.2:49636960-49636979 | None:intergenic | 35.0% | |
| ! | AATAAGTTGAAACCGGCTTA+TGG | - | chr2.2:49637852-49637871 | MS.gene55111:intron | 35.0% |
| ! | AATTTTACGATACCAGTCCA+TGG | + | chr2.2:49639255-49639274 | None:intergenic | 35.0% |
| ! | ACATGTTCCTTTGTGTTACT+CGG | + | chr2.2:49635474-49635493 | None:intergenic | 35.0% |
| ! | ATAAGTTGAAACCGGCTTAT+GGG | - | chr2.2:49637853-49637872 | MS.gene55111:intron | 35.0% |
| ! | CAGTAATTTTTGCGATCTTC+GGG | + | chr2.2:49638961-49638980 | None:intergenic | 35.0% |
| ! | GTTTTATCTTCAGGATTCCA+TGG | - | chr2.2:49639800-49639819 | MS.gene55111:CDS | 35.0% |
| ! | TTTGTTTAGCTTCAAGAAGG+AGG | - | chr2.2:49638857-49638876 | MS.gene55111:CDS | 35.0% |
| ! | TTTTCAGTTGGAACTTTGAG+AGG | + | chr2.2:49638276-49638295 | None:intergenic | 35.0% |
| ! | TTTTCCCTTAACTCAGCTAT+AGG | + | chr2.2:49640050-49640069 | None:intergenic | 35.0% |
| !! | AAAGGAACATGTCAAGTTGA+AGG | - | chr2.2:49635482-49635501 | MS.gene55111:CDS | 35.0% |
| !! | AGCTACTGATTCTTCCAATA+AGG | - | chr2.2:49635614-49635633 | MS.gene55111:CDS | 35.0% |
| !! | AGTTCAGTTGGTAGTATTGA+AGG | - | chr2.2:49636246-49636265 | MS.gene55111:intron | 35.0% |
| !!! | GGTTTTGTTTAGCTTCAAGA+AGG | - | chr2.2:49638854-49638873 | MS.gene55111:CDS | 35.0% |
| !!! | TGCTACTTGTTTTGAACTGT+GGG | + | chr2.2:49635515-49635534 | None:intergenic | 35.0% |
| AACCTTATAGATGCTTACGC+TGG | - | chr2.2:49635906-49635925 | MS.gene55111:intron | 40.0% | |
| AATACTTGCAAAACCAGCCT+TGG | + | chr2.2:49636645-49636664 | None:intergenic | 40.0% | |
| ACGATGACTATAATCCAGAG+AGG | - | chr2.2:49637281-49637300 | MS.gene55111:CDS | 40.0% | |
| ACTTGGTTGTGTAAGAGACA+AGG | + | chr2.2:49637108-49637127 | None:intergenic | 40.0% | |
| AGAGAAGATTAGGCCAGAAA+AGG | - | chr2.2:49636146-49636165 | MS.gene55111:intron | 40.0% | |
| AGATATTCCTCGTTCTTCTC+TGG | + | chr2.2:49635863-49635882 | None:intergenic | 40.0% | |
| AGGAAAGGTGAGATAGATGT+TGG | - | chr2.2:49635747-49635766 | MS.gene55111:intron | 40.0% | |
| ATGGTAAACCACCTATCAAG+GGG | + | chr2.2:49639236-49639255 | None:intergenic | 40.0% | |
| ATTTCCCCTTAGACAGTACT+TGG | - | chr2.2:49636716-49636735 | MS.gene55111:intron | 40.0% | |
| CAAGTAGCACAAAACACCAA+AGG | - | chr2.2:49635526-49635545 | MS.gene55111:CDS | 40.0% | |
| CAAGTCCCATTTCTTTCGAA+AGG | + | chr2.2:49638411-49638430 | None:intergenic | 40.0% | |
| CATAGATTCTGATGAATCCG+GGG | - | chr2.2:49637453-49637472 | MS.gene55111:CDS | 40.0% | |
| CATGGTAAACCACCTATCAA+GGG | + | chr2.2:49639237-49639256 | None:intergenic | 40.0% | |
| CGGATTCATCAGAATCTATG+TGG | + | chr2.2:49637453-49637472 | None:intergenic | 40.0% | |
| CTGAACTAAGAGAATCCAGT+TGG | + | chr2.2:49636233-49636252 | None:intergenic | 40.0% | |
| CTGGATTCTCTTAGTTCAGT+TGG | - | chr2.2:49636234-49636253 | MS.gene55111:intron | 40.0% | |
| CTTGGTTGTGTAAGAGACAA+GGG | + | chr2.2:49637107-49637126 | None:intergenic | 40.0% | |
| GAAATGCGCATCTCATTCTA+TGG | + | chr2.2:49636028-49636047 | None:intergenic | 40.0% | |
| GATATACACTGACAGTGTAG+AGG | + | chr2.2:49637063-49637082 | None:intergenic | 40.0% | |
| GATGGTAACATGATCTGTGT+TGG | - | chr2.2:49639312-49639331 | MS.gene55111:CDS | 40.0% | |
| GCACAGAATATCTAGAGGAT+GGG | + | chr2.2:49636399-49636418 | None:intergenic | 40.0% | |
| GCTCATTCTCTGCAAAAACT+TGG | + | chr2.2:49638363-49638382 | None:intergenic | 40.0% | |
| GGATTATAGTCATCGTCTTC+AGG | + | chr2.2:49637277-49637296 | None:intergenic | 40.0% | |
| GTGAGTGAAGATGAAGATTG+GGG | - | chr2.2:49638036-49638055 | MS.gene55111:CDS | 40.0% | |
| TCAGTCTGTGTTTCTTCCTT+TGG | + | chr2.2:49635545-49635564 | None:intergenic | 40.0% | |
| TCCAGCATGTGGTCTTTAAA+TGG | - | chr2.2:49637376-49637395 | MS.gene55111:CDS | 40.0% | |
| TCCATTTAAAGACCACATGC+TGG | + | chr2.2:49637380-49637399 | None:intergenic | 40.0% | |
| TCTCAGACGTTACAGCAAAA+AGG | - | chr2.2:49639432-49639451 | MS.gene55111:intron | 40.0% | |
| TCTTCACTCACTTGTTCACA+AGG | + | chr2.2:49638027-49638046 | None:intergenic | 40.0% | |
| TGACTATAATCCAGAGAGGA+AGG | - | chr2.2:49637285-49637304 | MS.gene55111:CDS | 40.0% | |
| TGCACAGAATATCTAGAGGA+TGG | + | chr2.2:49636400-49636419 | None:intergenic | 40.0% | |
| TTATCTTCAGGATTCCATGG+AGG | - | chr2.2:49639803-49639822 | MS.gene55111:CDS | 40.0% | |
| TTATGACATGTCCCATAAGC+CGG | + | chr2.2:49637867-49637886 | None:intergenic | 40.0% | |
| TTCTACATCACAACATGTGC+AGG | - | chr2.2:49638919-49638938 | MS.gene55111:intron | 40.0% | |
| ! | AAATCTGACTCGAGACTCTA+AGG | + | chr2.2:49638451-49638470 | None:intergenic | 40.0% |
| ! | GTTCATGCAGTTGATATGAG+AGG | - | chr2.2:49639182-49639201 | MS.gene55111:intron | 40.0% |
| ! | GTTTTCACATGATGCAGTTG+AGG | - | chr2.2:49638206-49638225 | MS.gene55111:CDS | 40.0% |
| !! | AAGAGAATCCAGTTGGTGAA+TGG | + | chr2.2:49636226-49636245 | None:intergenic | 40.0% |
| !! | GATAGATGTTGGTGATCAAG+AGG | - | chr2.2:49635758-49635777 | MS.gene55111:intron | 40.0% |
| !! | TACTCGGTTTTGTAGATCCT+TGG | + | chr2.2:49635458-49635477 | None:intergenic | 40.0% |
| !!! | GCTACTTGTTTTGAACTGTG+GGG | + | chr2.2:49635514-49635533 | None:intergenic | 40.0% |
| !!! | GTGCTACTTGTTTTGAACTG+TGG | + | chr2.2:49635516-49635535 | None:intergenic | 40.0% |
| !!! | TCTGGTCGCTTTTTCTTCAA+AGG | + | chr2.2:49639049-49639068 | None:intergenic | 40.0% |
| AAATTCCAACTCTGCTGCCT+CGG | + | chr2.2:49639904-49639923 | None:intergenic | 45.0% | |
| AACAATTTAGCCCACCTCTC+AGG | + | chr2.2:49639543-49639562 | None:intergenic | 45.0% | |
| AACATCATCACTGACCTCCA+TGG | + | chr2.2:49639820-49639839 | None:intergenic | 45.0% | |
| AAGGAGGATCAAGACATCTC+TGG | + | chr2.2:49636497-49636516 | None:intergenic | 45.0% | |
| AATGAAACCTTGGTCCGGTT+TGG | + | chr2.2:49637961-49637980 | None:intergenic | 45.0% | |
| AATGGGACTTGATGCTGCAA+AGG | - | chr2.2:49638420-49638439 | MS.gene55111:intron | 45.0% | |
| ACAACATGTGCAGGAAGAAG+AGG | - | chr2.2:49638928-49638947 | MS.gene55111:intron | 45.0% | |
| ACCAGAAATACCTCCACACT+TGG | - | chr2.2:49639063-49639082 | MS.gene55111:CDS | 45.0% | |
| AGTTAATCCAAACCGGACCA+AGG | - | chr2.2:49637951-49637970 | MS.gene55111:intron | 45.0% | |
| ATAGATGCTTACGCTGGAGA+AGG | - | chr2.2:49635912-49635931 | MS.gene55111:intron | 45.0% | |
| ATAGGTGGTTTACCATGGAC+TGG | - | chr2.2:49639240-49639259 | MS.gene55111:CDS | 45.0% | |
| ATCCTTGGTTGGCACCTTAT+TGG | + | chr2.2:49635631-49635650 | None:intergenic | 45.0% | |
| ATGTCACGAATCATCCCGAA+AGG | + | chr2.2:49639620-49639639 | None:intergenic | 45.0% | |
| ATTGGGGTCCTGGAAAAAGA+CGG | - | chr2.2:49638052-49638071 | MS.gene55111:CDS | 45.0% | |
| CAAAAACTTGGCGAAGCTTC+TGG | + | chr2.2:49638351-49638370 | None:intergenic | 45.0% | |
| CAAGTAGTTCTTCCAGCATG+TGG | - | chr2.2:49637365-49637384 | MS.gene55111:CDS | 45.0% | |
| CCAGAAATACCTCCACACTT+GGG | - | chr2.2:49639064-49639083 | MS.gene55111:CDS | 45.0% | |
| CCATGGTAAACCACCTATCA+AGG | + | chr2.2:49639238-49639257 | None:intergenic | 45.0% | |
| CCCGAAAGGCTAAACTAGTA+GGG | + | chr2.2:49639606-49639625 | None:intergenic | 45.0% | |
| CCGAAAGGCTAAACTAGTAG+GGG | + | chr2.2:49639605-49639624 | None:intergenic | 45.0% | |
| CCTTGATAGGTGGTTTACCA+TGG | - | chr2.2:49639235-49639254 | MS.gene55111:CDS | 45.0% | |
| CTCCAGCGTAAGCATCTATA+AGG | + | chr2.2:49635911-49635930 | None:intergenic | 45.0% | |
| CTTGGGAGAAAATGGCAACA+AGG | - | chr2.2:49639081-49639100 | MS.gene55111:CDS | 45.0% | |
| GAAGAAGCTGCTATTCCTGA+CGG | - | chr2.2:49637205-49637224 | MS.gene55111:intron | 45.0% | |
| GACGCCCTTTCGAAAGAAAT+GGG | - | chr2.2:49638403-49638422 | MS.gene55111:intron | 45.0% | |
| GAGAAGAGAAAAGGAGTCTG+AGG | - | chr2.2:49638074-49638093 | MS.gene55111:CDS | 45.0% | |
| GAGATGTCTTGATCCTCCTT+TGG | - | chr2.2:49636497-49636516 | MS.gene55111:CDS | 45.0% | |
| GGTTCTGTCATTGCTACAGA+TGG | - | chr2.2:49636267-49636286 | MS.gene55111:intron | 45.0% | |
| GTCACAGTCGAGAGAAGATT+AGG | - | chr2.2:49636136-49636155 | MS.gene55111:intron | 45.0% | |
| TATTCCTCGTTCTTCTCTGG+AGG | + | chr2.2:49635860-49635879 | None:intergenic | 45.0% | |
| TCACTCACTTGTTCACAAGG+TGG | + | chr2.2:49638024-49638043 | None:intergenic | 45.0% | |
| TCACTGTCTTCAGTCTCCAA+AGG | + | chr2.2:49636516-49636535 | None:intergenic | 45.0% | |
| TCCCGAAAGGCTAAACTAGT+AGG | + | chr2.2:49639607-49639626 | None:intergenic | 45.0% | |
| TCGTCTTCAGGATCATCTGA+CGG | + | chr2.2:49637265-49637284 | None:intergenic | 45.0% | |
| TCTCAGCAGTGAAGAAAACG+AGG | + | chr2.2:49639294-49639313 | None:intergenic | 45.0% | |
| TGCAAATAACTCTGCGGAGA+TGG | + | chr2.2:49638515-49638534 | None:intergenic | 45.0% | |
| TGGTAAACCACCTATCAAGG+GGG | + | chr2.2:49639235-49639254 | None:intergenic | 45.0% | |
| TTTCGGGATGATTCGTGACA+TGG | - | chr2.2:49639619-49639638 | MS.gene55111:CDS | 45.0% | |
| ! | AACCTGCCAAGTACTGTCTA+AGG | + | chr2.2:49636725-49636744 | None:intergenic | 45.0% |
| ! | ACCTGCCAAGTACTGTCTAA+GGG | + | chr2.2:49636724-49636743 | None:intergenic | 45.0% |
| ! | CATGCAGTTGATATGAGAGG+TGG | - | chr2.2:49639185-49639204 | MS.gene55111:intron | 45.0% |
| ! | CCCCTACTAGTTTAGCCTTT+CGG | - | chr2.2:49639602-49639621 | MS.gene55111:CDS | 45.0% |
| ! | CCCTACTAGTTTAGCCTTTC+GGG | - | chr2.2:49639603-49639622 | MS.gene55111:CDS | 45.0% |
| ! | CGTTTTCTTCACTGCTGAGA+TGG | - | chr2.2:49639294-49639313 | MS.gene55111:CDS | 45.0% |
| ! | TCTCTTCTCCGTCTTTTTCC+AGG | + | chr2.2:49638063-49638082 | None:intergenic | 45.0% |
| ! | TTCCAATAAGGTGCCAACCA+AGG | - | chr2.2:49635626-49635645 | MS.gene55111:CDS | 45.0% |
| ! | TTGGAAAGGTCAGAGGTATG+AGG | - | chr2.2:49635935-49635954 | MS.gene55111:intron | 45.0% |
| !!! | TTGCCATTTTCTCCCAAGTG+TGG | + | chr2.2:49639079-49639098 | None:intergenic | 45.0% |
| !! | TAAATAATAAAAGAAAAAAA+AGG | + | chr2.2:49638696-49638715 | None:intergenic | 5.0% |
| AGAAGATCTACCGTGGAGTG+TGG | - | chr2.2:49639208-49639227 | MS.gene55111:CDS | 50.0% | |
| AGGAAGGAAGAAAGCCATGG+TGG | - | chr2.2:49637301-49637320 | MS.gene55111:CDS | 50.0% | |
| AGGCAACAAACGCGCATCTT+GGG | - | chr2.2:49636689-49636708 | MS.gene55111:intron | 50.0% | |
| ATGCTTACGCTGGAGAAGGT+TGG | - | chr2.2:49635916-49635935 | MS.gene55111:intron | 50.0% | |
| CACTGTAGAACTTGCCTGAG+AGG | - | chr2.2:49639526-49639545 | MS.gene55111:intron | 50.0% | |
| CATGGTGGCATCAACACAGA+AGG | - | chr2.2:49637316-49637335 | MS.gene55111:CDS | 50.0% | |
| CCTCCACACTTGGGAGAAAA+TGG | - | chr2.2:49639073-49639092 | MS.gene55111:CDS | 50.0% | |
| CGGAGGTTGCACAAATGTGT+CGG | - | chr2.2:49635584-49635603 | MS.gene55111:CDS | 50.0% | |
| CTCTCAGGCAAGTTCTACAG+TGG | + | chr2.2:49639528-49639547 | None:intergenic | 50.0% | |
| CTGTCTTCAGTCTCCAAAGG+AGG | + | chr2.2:49636513-49636532 | None:intergenic | 50.0% | |
| GAAGATGAAGATTGGGGTCC+TGG | - | chr2.2:49638042-49638061 | MS.gene55111:CDS | 50.0% | |
| GAATCCGGGGAAATAGCATG+TGG | - | chr2.2:49637466-49637485 | MS.gene55111:CDS | 50.0% | |
| GAGAAGGTTGGAAAGGTCAG+AGG | - | chr2.2:49635928-49635947 | MS.gene55111:intron | 50.0% | |
| GAGAGGAAGGAAGAAAGCCA+TGG | - | chr2.2:49637298-49637317 | MS.gene55111:CDS | 50.0% | |
| GCTTCCTCCAAAATCCGTGA+AGG | - | chr2.2:49638381-49638400 | MS.gene55111:intron | 50.0% | |
| GGACGCCCTTTCGAAAGAAA+TGG | - | chr2.2:49638402-49638421 | MS.gene55111:intron | 50.0% | |
| GGGAAATAGCATGTGGTCGT+AGG | - | chr2.2:49637473-49637492 | MS.gene55111:CDS | 50.0% | |
| GTAGAACTTGCCTGAGAGGT+GGG | - | chr2.2:49639530-49639549 | MS.gene55111:intron | 50.0% | |
| TACGCTGGAGAAGGTTGGAA+AGG | - | chr2.2:49635921-49635940 | MS.gene55111:intron | 50.0% | |
| TGCATTTGAAGGAGACTCCG+AGG | - | chr2.2:49639884-49639903 | MS.gene55111:CDS | 50.0% | |
| TGGCTTTCTTCCTTCCTCTC+TGG | + | chr2.2:49637298-49637317 | None:intergenic | 50.0% | |
| TGTAGAACTTGCCTGAGAGG+TGG | - | chr2.2:49639529-49639548 | MS.gene55111:intron | 50.0% | |
| ! | CAAAACCAGCCTTGGTCTTC+AGG | + | chr2.2:49636637-49636656 | None:intergenic | 50.0% |
| ! | CCATTTTCTCCCAAGTGTGG+AGG | + | chr2.2:49639076-49639095 | None:intergenic | 50.0% |
| ! | CCTGCCAAGTACTGTCTAAG+GGG | + | chr2.2:49636723-49636742 | None:intergenic | 50.0% |
| ! | CTTCTGTGTTGATGCCACCA+TGG | + | chr2.2:49637318-49637337 | None:intergenic | 50.0% |
| !! | ACGACCACATGCTATTTCCC+CGG | + | chr2.2:49637473-49637492 | None:intergenic | 50.0% |
| !! | CCAGTTGGTGAATGGCATCA+CGG | + | chr2.2:49636218-49636237 | None:intergenic | 50.0% |
| !! | CCCAAGTGTGGAGGTATTTC+TGG | + | chr2.2:49639067-49639086 | None:intergenic | 50.0% |
| !! | TTTCGAAAGGGCGTCCTTCA+CGG | + | chr2.2:49638398-49638417 | None:intergenic | 50.0% |
| AGTAATGCAGCATCGCCGTC+AGG | + | chr2.2:49637223-49637242 | None:intergenic | 55.0% | |
| CCCCTTAGACAGTACTTGGC+AGG | - | chr2.2:49636720-49636739 | MS.gene55111:intron | 55.0% | |
| CCGTGATGCCATTCACCAAC+TGG | - | chr2.2:49636215-49636234 | MS.gene55111:intron | 55.0% | |
| GAGGCAACAAACGCGCATCT+TGG | - | chr2.2:49636688-49636707 | MS.gene55111:intron | 55.0% | |
| GAGGTGGAGAAGATCTACCG+TGG | - | chr2.2:49639201-49639220 | MS.gene55111:CDS | 55.0% | |
| GCAGTTCCTCCTGAAGACCA+AGG | - | chr2.2:49636625-49636644 | MS.gene55111:intron | 55.0% | |
| TACGCCTCCAGAGAAGAACG+AGG | - | chr2.2:49635853-49635872 | MS.gene55111:intron | 55.0% | |
| TTCCTCCTGAAGACCAAGGC+TGG | - | chr2.2:49636629-49636648 | MS.gene55111:intron | 55.0% | |
| ! | AACCAGCCTTGGTCTTCAGG+AGG | + | chr2.2:49636634-49636653 | None:intergenic | 55.0% |
| ! | GCGTCCTTCACGGATTTTGG+AGG | + | chr2.2:49638388-49638407 | None:intergenic | 55.0% |
| ! | GCTCGTTGCAGCTCCTTTTC+TGG | + | chr2.2:49636162-49636181 | None:intergenic | 55.0% |
| !! | AGGGCGTCCTTCACGGATTT+TGG | + | chr2.2:49638391-49638410 | None:intergenic | 55.0% |
| AGACTCCGAGGCAGCAGAGT+TGG | - | chr2.2:49639896-49639915 | MS.gene55111:CDS | 60.0% | |
| GGAGTGTGGACCCCCTTGAT+AGG | - | chr2.2:49639222-49639241 | MS.gene55111:CDS | 60.0% | |
| GTGTGGACCCCCTTGATAGG+TGG | - | chr2.2:49639225-49639244 | MS.gene55111:CDS | 60.0% | |
| TCAAGGGGGTCCACACTCCA+CGG | + | chr2.2:49639221-49639240 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.2 | gene | 49635429 | 49640079 | 49635429 | ID=MS.gene55111 |
| chr2.2 | mRNA | 49635429 | 49640079 | 49635429 | ID=MS.gene55111.t1;Parent=MS.gene55111 |
| chr2.2 | exon | 49639559 | 49640079 | 49639559 | ID=MS.gene55111.t1.exon1;Parent=MS.gene55111.t1 |
| chr2.2 | CDS | 49639559 | 49640079 | 49639559 | ID=cds.MS.gene55111.t1;Parent=MS.gene55111.t1 |
| chr2.2 | exon | 49639200 | 49639365 | 49639200 | ID=MS.gene55111.t1.exon2;Parent=MS.gene55111.t1 |
| chr2.2 | CDS | 49639200 | 49639365 | 49639200 | ID=cds.MS.gene55111.t1;Parent=MS.gene55111.t1 |
| chr2.2 | exon | 49638977 | 49639100 | 49638977 | ID=MS.gene55111.t1.exon3;Parent=MS.gene55111.t1 |
| chr2.2 | CDS | 49638977 | 49639100 | 49638977 | ID=cds.MS.gene55111.t1;Parent=MS.gene55111.t1 |
| chr2.2 | exon | 49638767 | 49638879 | 49638767 | ID=MS.gene55111.t1.exon4;Parent=MS.gene55111.t1 |
| chr2.2 | CDS | 49638767 | 49638879 | 49638767 | ID=cds.MS.gene55111.t1;Parent=MS.gene55111.t1 |
| chr2.2 | exon | 49637977 | 49638315 | 49637977 | ID=MS.gene55111.t1.exon5;Parent=MS.gene55111.t1 |
| chr2.2 | CDS | 49637977 | 49638315 | 49637977 | ID=cds.MS.gene55111.t1;Parent=MS.gene55111.t1 |
| chr2.2 | exon | 49637281 | 49637508 | 49637281 | ID=MS.gene55111.t1.exon6;Parent=MS.gene55111.t1 |
| chr2.2 | CDS | 49637281 | 49637508 | 49637281 | ID=cds.MS.gene55111.t1;Parent=MS.gene55111.t1 |
| chr2.2 | exon | 49637067 | 49637156 | 49637067 | ID=MS.gene55111.t1.exon7;Parent=MS.gene55111.t1 |
| chr2.2 | CDS | 49637067 | 49637156 | 49637067 | ID=cds.MS.gene55111.t1;Parent=MS.gene55111.t1 |
| chr2.2 | exon | 49636844 | 49636894 | 49636844 | ID=MS.gene55111.t1.exon8;Parent=MS.gene55111.t1 |
| chr2.2 | CDS | 49636844 | 49636894 | 49636844 | ID=cds.MS.gene55111.t1;Parent=MS.gene55111.t1 |
| chr2.2 | exon | 49636406 | 49636642 | 49636406 | ID=MS.gene55111.t1.exon9;Parent=MS.gene55111.t1 |
| chr2.2 | CDS | 49636406 | 49636642 | 49636406 | ID=cds.MS.gene55111.t1;Parent=MS.gene55111.t1 |
| chr2.2 | exon | 49635429 | 49635695 | 49635429 | ID=MS.gene55111.t1.exon10;Parent=MS.gene55111.t1 |
| chr2.2 | CDS | 49635429 | 49635695 | 49635429 | ID=cds.MS.gene55111.t1;Parent=MS.gene55111.t1 |
| Gene Sequence |
| Protein sequence |
