AlfalfaGEDB | MS.gene58280

M. sativa cultivar XinJiangDaYe / MS.gene58280

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58280.t1	XP_003609440.1	100	222	0	0	24	245	71	292	2.30E-119	438.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58280.t1	Q8H124	78.5	219	47	0	24	242	59	277	4.7e-97	355.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene58280.t1	A0A072V1Y6	100.0	222	0	0	24	245	31	252	1.6e-119	438.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene58280	0.826904	2.10E-54	-1.69E-46
MS.gene049609	MS.gene58280	0.805417	1.35E-49	-1.69E-46
MS.gene049633	MS.gene58280	0.828265	9.89E-55	-1.69E-46
MS.gene049805	MS.gene58280	0.812542	4.02E-51	-1.69E-46
MS.gene050444	MS.gene58280	0.801447	8.97E-49	-1.69E-46
MS.gene050529	MS.gene58280	0.812217	4.74E-51	-1.69E-46
MS.gene050593	MS.gene58280	0.822825	1.93E-53	-1.69E-46
MS.gene050670	MS.gene58280	0.822453	2.35E-53	-1.69E-46
MS.gene05080	MS.gene58280	0.835857	1.31E-56	-1.69E-46
MS.gene050809	MS.gene58280	-0.843193	1.63E-58	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 66 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTAACAAACCTTCCAT+GGG	0.515977	8.3:-10646571	None:intergenic
AAACTTACAAATTGAAGAGA+TGG	0.465083	8.3:-10646047	None:intergenic
AAATGTTGTTATGGAGCCAG+AGG	0.716025	8.3:+10647596	MS.gene58280:CDS
AAATTAACAAACCTTCCATG+GGG	0.740909	8.3:-10646570	None:intergenic
AACTTACAAATTGAAGAGAT+GGG	0.550774	8.3:-10646046	None:intergenic
AATTACACAATCATAAGACC+TGG	0.643894	8.3:+10647546	MS.gene58280:CDS
ACAACTTTGTAAGATGCCTC+AGG	0.530129	8.3:-10647793	None:intergenic
ACACAATCATAAGACCTGGA+GGG	0.693729	8.3:+10647550	MS.gene58280:CDS
ACCTTTGCGAAGTTGAGGAA+GGG	0.578834	8.3:-10645767	None:intergenic
ACGTTGAGAAAGATGTAAGC+CGG	0.592173	8.3:-10647462	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATTAACAAACCTTCCATG+GGG	-	chr8.3:10646573-10646592	None:intergenic	30.0%
AACAAAGGGATATATTATGC+AGG	+	chr8.3:10647323-10647342	MS.gene58280:intron	30.0%
AATTACACAATCATAAGACC+TGG	+	chr8.3:10647546-10647565	MS.gene58280:CDS	30.0%
ACTAGTGAAGAATCTAAACT+TGG	-	chr8.3:10647123-10647142	None:intergenic	30.0%
ACTCTATCTAATATCCAGAA+TGG	-	chr8.3:10647011-10647030	None:intergenic	30.0%
AGTAGGCTACATTATATACA+TGG	+	chr8.3:10646845-10646864	MS.gene58280:intron	30.0%
ATCAAAACACAATTGTTGGT+TGG	+	chr8.3:10647253-10647272	MS.gene58280:intron	30.0%
CAGACCCAATAATCTTAAAT+TGG	-	chr8.3:10646105-10646124	None:intergenic	30.0%
GAAAATCATATCAGGAAATC+TGG	+	chr8.3:10647519-10647538	MS.gene58280:CDS	30.0%
GAATGACATGATGTGTAATT+TGG	+	chr8.3:10646413-10646432	MS.gene58280:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.3	gene	10645754	10647888	10645754	ID=MS.gene58280
chr8.3	mRNA	10645754	10647888	10645754	ID=MS.gene58280.t1;Parent=MS.gene58280
chr8.3	exon	10645754	10645787	10645754	ID=MS.gene58280.t1.exon1;Parent=MS.gene58280.t1
chr8.3	CDS	10645754	10645787	10645754	ID=cds.MS.gene58280.t1;Parent=MS.gene58280.t1
chr8.3	exon	10645914	10646061	10645914	ID=MS.gene58280.t1.exon2;Parent=MS.gene58280.t1
chr8.3	CDS	10645914	10646061	10645914	ID=cds.MS.gene58280.t1;Parent=MS.gene58280.t1
chr8.3	exon	10646461	10646580	10646461	ID=MS.gene58280.t1.exon3;Parent=MS.gene58280.t1
chr8.3	CDS	10646461	10646580	10646461	ID=cds.MS.gene58280.t1;Parent=MS.gene58280.t1
chr8.3	exon	10647345	10647617	10647345	ID=MS.gene58280.t1.exon4;Parent=MS.gene58280.t1
chr8.3	CDS	10647345	10647617	10647345	ID=cds.MS.gene58280.t1;Parent=MS.gene58280.t1
chr8.3	exon	10647724	10647888	10647724	ID=MS.gene58280.t1.exon5;Parent=MS.gene58280.t1
chr8.3	CDS	10647724	10647888	10647724	ID=cds.MS.gene58280.t1;Parent=MS.gene58280.t1

Gene Sequence

>MS.gene58280

AACCAAATCTCTTCCCTTCCTCAACTTCGCAAAGGTAACACTACATTTCATCTTCATCTTCTTTGCAAACCGCGTTAATACTAGCATTTTTTTTTCTTTTTGTTAGATGGAAGGAAGTGAAATCACTCAGCAAGCAGTGGATGATGATTTGAGTTTGAAGAAGAAAGTTTTTGTTGCTGGAGCTACTGGTAGTACTGGGGAAAAGAATCGTGGAACAGTTACTTGCAAAGGGTTTTGCTGTTAAAGCTGGGGTTAGAGACTTGGACAAAGCAAAAACATCACTTTCTGCCAACCCATCTCTTCAATTTGTAAGTTTTACTGTTCTTTCCCATTATATTGCAAAATAGTCCAATTTAAGATTATTGGGTCTGTATAAACAATTTGCCCTGTTTGGATCAACAACTTAATTAAATGCTTATTGTGTGTCTGTTCAAAAAAAATGCTTATTGTGTGAATGCTTATATTATATGTATGCTATTTCTACAATAAAACTTAAAATTAAGTCAGTTGTTTTAGTAAGCTATCATGTAGAGCTTATGGAAATAAGCTGAAAATATTTTTTAGACATGTCTTAAGTTATTCCATAGAGTCTCAGAAGTACTTGTGCAAGTAGATGAGTTCAAATAAACCAATTCAAACAGGGCTGTGTGTGTGTATGTGAATGACATGATGTGTAATTTGGTGTATATGTGTGAGTTCATATGCAGGTTAAAGTTGATGTCACAGAGGGTTCTGATAAGCTAGCTGAAGCAATTGGGGATGATACAGAAGCAGTAGTTTGTGCCACAGGCTTTCGGCCAGGCTGGGATTTGCTTGCCCCATGGAAGGTTTGTTAATTTTTTGTTTATATTATGGTAGTAGAATATTAGAATGGTTTAACGTATATTCATTTTTTAATTATTTTTATGTTAGTATGGCTCAGTTTTGATATCAGCTGCCACTGGTTAATGAGTGGCCTTAACTTGGTTTAGATTTAAAAGAAAAAAATGATCTCTAGAACTTACGGTGATTATTGGGTGCAACATATTTTCATTGGTTTTGAATGCTCGATAGTACAAGTTCTGTAAAAGTTTGGTGTTTGATACTTTTGAAGTAGGCTACATTATATACATGGTTCAGTGTTGAAACTATTGATTCCACATTTTCCCTCCGGTTTCTGCGTGTTAAACTGTAACACTAATATAATCAGGATCTTTGTTGCTTCGTTTTCGATAGCTTTCATTCATGCCGTGGTTCTTGTTTTAGTAACCAACGCCATTCTGGATATTAGATAGAGTTGAGGATGTCGACGATGAAACATTTTATCATACTTAGATTTGCTAACTTTATATTGTCATGTGCAATATCTTTCATGAATTAAGAGTTTCCAAGTTTAGATTCTTCACTAGTAAAGGGATAAAATATTTGTAATATAATACTAATTTGTAACATTATCTGTCCTTTAAATAGCATCAGATTATATAAAAAAGCTTATCGCTTTATTAAGAAAACGCCAATGAATCAAAACACAATTGTTGGTTGGGACTTCAGTGGATTATTCTCGCTGGCCAGTATACAATATTTTGTTATAACAAAGGGATATATTATGCAGGTTGACAATTTTGGCACTGTAAACCTTGTTGAAGCATGCAGGAAAGTCAACGTTAACAGATTCATTCTTATAAGTTCCATTTTAGTCAATGGAGCCGCTATGGGGCAGCTACTCAATCCGGCTTACATCTTTCTCAACGTTTTCGGACTCACCTTAGTGGCAAAATTACAGGCAGAAAATCATATCAGGAAATCTGGTATAAATTACACAATCATAAGACCTGGAGGGTTGAAAAACGATCCTCCTACTGGAAATGTTGTTATGGAGCCAGAGGTGTTTGCTTAAATTTCTGAGTTTCTATTACATTTCGACAACAGAATCTCAATTTTTTATATGTTTGTGGATGAAATGTATAATAATTTAATTTTCTATGTGTCAGGACACCCTTTATGAAGGTTCCATATCCAGAGATCAAGTTGCTGAAGTAGCTGTGGAATCGTTGGCTTATCCTGAGGCATCTTACAAAGTTGTGGAGATAGTCGCTCGACCTGATGCTCCTAAGCGCGCATACCATGATCTCTTTGGTTCCATAGTTCAGCGATAA

Protein sequence

>MS.gene58280.t1

NQISSLPQLRKEESFCCWSYWUYWGKESWNSYLQRVLLLKLGLETWTKQKHHFLPTHLFNLLKLMSQRVLISULKQLGMIQKQUFVPQAFGQAGICLPHGRLTILALUTLLKHAGKSTLTDSFLUVPFUSMEPLWGSYSIRLTSFSTFSDSPUWQNYRQKIISGNLVUITQSUDLEGUKTILLLEMLLWSQRTPFMKVPYPEIKLLKULWNRWLILRHLTKLWRUSLDLMLLSAHTMISLVPUFSD