Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58280.t1 | XP_003609440.1 | 100 | 222 | 0 | 0 | 24 | 245 | 71 | 292 | 2.30E-119 | 438.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58280.t1 | Q8H124 | 78.5 | 219 | 47 | 0 | 24 | 242 | 59 | 277 | 4.7e-97 | 355.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58280.t1 | A0A072V1Y6 | 100.0 | 222 | 0 | 0 | 24 | 245 | 31 | 252 | 1.6e-119 | 438.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene58280 | 0.826904 | 2.10E-54 | -1.69E-46 |
| MS.gene049609 | MS.gene58280 | 0.805417 | 1.35E-49 | -1.69E-46 |
| MS.gene049633 | MS.gene58280 | 0.828265 | 9.89E-55 | -1.69E-46 |
| MS.gene049805 | MS.gene58280 | 0.812542 | 4.02E-51 | -1.69E-46 |
| MS.gene050444 | MS.gene58280 | 0.801447 | 8.97E-49 | -1.69E-46 |
| MS.gene050529 | MS.gene58280 | 0.812217 | 4.74E-51 | -1.69E-46 |
| MS.gene050593 | MS.gene58280 | 0.822825 | 1.93E-53 | -1.69E-46 |
| MS.gene050670 | MS.gene58280 | 0.822453 | 2.35E-53 | -1.69E-46 |
| MS.gene050809 | MS.gene58280 | -0.843193 | 1.63E-58 | -1.69E-46 |
| MS.gene05080 | MS.gene58280 | 0.835857 | 1.31E-56 | -1.69E-46 |
| MS.gene05081 | MS.gene58280 | 0.84603 | 2.81E-59 | -1.69E-46 |
| MS.gene051617 | MS.gene58280 | 0.831762 | 1.39E-55 | -1.69E-46 |
| MS.gene051666 | MS.gene58280 | 0.815239 | 1.02E-51 | -1.69E-46 |
| MS.gene051734 | MS.gene58280 | 0.819938 | 8.93E-53 | -1.69E-46 |
| MS.gene051749 | MS.gene58280 | -0.817939 | 2.54E-52 | -1.69E-46 |
| MS.gene051838 | MS.gene58280 | 0.826913 | 2.09E-54 | -1.69E-46 |
| MS.gene051874 | MS.gene58280 | 0.806299 | 8.80E-50 | -1.69E-46 |
| MS.gene051907 | MS.gene58280 | -0.831099 | 2.02E-55 | -1.69E-46 |
| MS.gene052129 | MS.gene58280 | -0.812704 | 3.71E-51 | -1.69E-46 |
| MS.gene05240 | MS.gene58280 | -0.808815 | 2.57E-50 | -1.69E-46 |
| MS.gene052469 | MS.gene58280 | 0.853393 | 2.46E-61 | -1.69E-46 |
| MS.gene052702 | MS.gene58280 | -0.828469 | 8.84E-55 | -1.69E-46 |
| MS.gene052870 | MS.gene58280 | 0.854174 | 1.47E-61 | -1.69E-46 |
| MS.gene052872 | MS.gene58280 | 0.854022 | 1.62E-61 | -1.69E-46 |
| MS.gene053104 | MS.gene58280 | 0.812407 | 4.31E-51 | -1.69E-46 |
| MS.gene053479 | MS.gene58280 | 0.809641 | 1.71E-50 | -1.69E-46 |
| MS.gene053824 | MS.gene58280 | 0.82961 | 4.68E-55 | -1.69E-46 |
| MS.gene054884 | MS.gene58280 | -0.875242 | 3.60E-68 | -1.69E-46 |
| MS.gene055206 | MS.gene58280 | 0.827584 | 1.44E-54 | -1.69E-46 |
| MS.gene055224 | MS.gene58280 | 0.812394 | 4.33E-51 | -1.69E-46 |
| MS.gene055502 | MS.gene58280 | 0.805 | 1.65E-49 | -1.69E-46 |
| MS.gene055536 | MS.gene58280 | -0.813827 | 2.10E-51 | -1.69E-46 |
| MS.gene055539 | MS.gene58280 | 0.821668 | 3.57E-53 | -1.69E-46 |
| MS.gene055577 | MS.gene58280 | 0.828683 | 7.85E-55 | -1.69E-46 |
| MS.gene055748 | MS.gene58280 | 0.814345 | 1.62E-51 | -1.69E-46 |
| MS.gene055751 | MS.gene58280 | 0.804866 | 1.76E-49 | -1.69E-46 |
| MS.gene055941 | MS.gene58280 | 0.804508 | 2.09E-49 | -1.69E-46 |
| MS.gene056678 | MS.gene58280 | -0.805896 | 1.07E-49 | -1.69E-46 |
| MS.gene056856 | MS.gene58280 | -0.818931 | 1.51E-52 | -1.69E-46 |
| MS.gene056877 | MS.gene58280 | 0.80209 | 6.62E-49 | -1.69E-46 |
| MS.gene056897 | MS.gene58280 | 0.80923 | 2.10E-50 | -1.69E-46 |
| MS.gene057076 | MS.gene58280 | 0.800927 | 1.15E-48 | -1.69E-46 |
| MS.gene057124 | MS.gene58280 | 0.803634 | 3.17E-49 | -1.69E-46 |
| MS.gene057332 | MS.gene58280 | 0.810867 | 9.31E-51 | -1.69E-46 |
| MS.gene057658 | MS.gene58280 | 0.813328 | 2.71E-51 | -1.69E-46 |
| MS.gene058158 | MS.gene58280 | -0.820566 | 6.41E-53 | -1.69E-46 |
| MS.gene05837 | MS.gene58280 | 0.823406 | 1.41E-53 | -1.69E-46 |
| MS.gene058444 | MS.gene58280 | 0.816789 | 4.61E-52 | -1.69E-46 |
| MS.gene058448 | MS.gene58280 | 0.811515 | 6.74E-51 | -1.69E-46 |
| MS.gene058603 | MS.gene58280 | -0.803662 | 3.13E-49 | -1.69E-46 |
| MS.gene058838 | MS.gene58280 | 0.84181 | 3.79E-58 | -1.69E-46 |
| MS.gene059023 | MS.gene58280 | 0.835074 | 2.07E-56 | -1.69E-46 |
| MS.gene05914 | MS.gene58280 | 0.828733 | 7.63E-55 | -1.69E-46 |
| MS.gene05934 | MS.gene58280 | 0.807614 | 4.64E-50 | -1.69E-46 |
| MS.gene059960 | MS.gene58280 | 0.801677 | 8.04E-49 | -1.69E-46 |
| MS.gene060762 | MS.gene58280 | 0.806052 | 9.92E-50 | -1.69E-46 |
| MS.gene060835 | MS.gene58280 | 0.805983 | 1.03E-49 | -1.69E-46 |
| MS.gene06092 | MS.gene58280 | 0.813675 | 2.27E-51 | -1.69E-46 |
| MS.gene061150 | MS.gene58280 | 0.805445 | 1.33E-49 | -1.69E-46 |
| MS.gene061154 | MS.gene58280 | 0.81546 | 9.14E-52 | -1.69E-46 |
| MS.gene061231 | MS.gene58280 | 0.844797 | 6.05E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 66 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTATGCAGGTTGACAATTT+TGG | 0.186826 | 8.3:+10647336 | MS.gene58280:intron |
| AGCGGCTCCATTGACTAAAA+TGG | 0.269340 | 8.3:-10647421 | None:intergenic |
| CACCTTAGTGGCAAAATTAC+AGG | 0.310873 | 8.3:+10647494 | MS.gene58280:CDS |
| CCACAGGCTTTCGGCCAGGC+TGG | 0.324155 | 8.3:+10646537 | MS.gene58280:CDS |
| AGCAACTTGATCTCTGGATA+TGG | 0.327489 | 8.3:-10647743 | None:intergenic |
| GTTGAGGAAGGGAAGAGATT+TGG | 0.346298 | 8.3:-10645756 | None:intergenic |
| CGCGCATACCATGATCTCTT+TGG | 0.346559 | 8.3:+10647847 | MS.gene58280:CDS |
| TAGTTTGTGCCACAGGCTTT+CGG | 0.360254 | 8.3:+10646528 | MS.gene58280:CDS |
| CAGATATTATCGCTGAACTA+TGG | 0.361240 | 8.3:-10647872 | None:intergenic |
| GAAAATCATATCAGGAAATC+TGG | 0.374335 | 8.3:+10647519 | MS.gene58280:CDS |
| GATAAGCTAGCTGAAGCAAT+TGG | 0.379075 | 8.3:+10646488 | MS.gene58280:CDS |
| TGGATATGGAACCTTCATAA+AGG | 0.390225 | 8.3:-10647729 | None:intergenic |
| TACAGGCAGAAAATCATATC+AGG | 0.402158 | 8.3:+10647511 | MS.gene58280:CDS |
| TCCTACTGGAAATGTTGTTA+TGG | 0.413074 | 8.3:+10647587 | MS.gene58280:CDS |
| CACAGGCTTTCGGCCAGGCT+GGG | 0.417213 | 8.3:+10646538 | MS.gene58280:CDS |
| ATAAGCTAGCTGAAGCAATT+GGG | 0.423531 | 8.3:+10646489 | MS.gene58280:CDS |
| GCTGGAGCTACTGGTAGTAC+TGG | 0.434607 | 8.3:+10645929 | MS.gene58280:CDS |
| TGTGCCACAGGCTTTCGGCC+AGG | 0.448901 | 8.3:+10646533 | MS.gene58280:CDS |
| TTAGTCAATGGAGCCGCTAT+GGG | 0.459534 | 8.3:+10647426 | MS.gene58280:CDS |
| TTTAGTCAATGGAGCCGCTA+TGG | 0.462769 | 8.3:+10647425 | MS.gene58280:CDS |
| AAACTTACAAATTGAAGAGA+TGG | 0.465083 | 8.3:-10646047 | None:intergenic |
| TACTTCAGCAACTTGATCTC+TGG | 0.470399 | 8.3:-10647749 | None:intergenic |
| CTGGAGCTACTGGTAGTACT+GGG | 0.472630 | 8.3:+10645930 | MS.gene58280:CDS |
| GGATTTGCTTGCCCCATGGA+AGG | 0.484251 | 8.3:+10646559 | MS.gene58280:CDS |
| AGATCATGGTATGCGCGCTT+AGG | 0.484675 | 8.3:-10647841 | None:intergenic |
| GGATATGGAACCTTCATAAA+GGG | 0.488764 | 8.3:-10647728 | None:intergenic |
| TAAAGCTGGGGTTAGAGACT+TGG | 0.490510 | 8.3:+10645995 | MS.gene58280:CDS |
| CTATGGAACCAAAGAGATCA+TGG | 0.496271 | 8.3:-10647855 | None:intergenic |
| GAAGCAGTAGTTTGTGCCAC+AGG | 0.496380 | 8.3:+10646521 | MS.gene58280:CDS |
| TACAAATTGAAGAGATGGGT+TGG | 0.504301 | 8.3:-10646042 | None:intergenic |
| GCTGGGATTTGCTTGCCCCA+TGG | 0.510222 | 8.3:+10646555 | MS.gene58280:CDS |
| GTGGAACAGTTACTTGCAAA+GGG | 0.511281 | 8.3:+10645963 | MS.gene58280:CDS |
| TGTCAGGACACCCTTTATGA+AGG | 0.512820 | 8.3:+10647718 | MS.gene58280:intron |
| AAAATTAACAAACCTTCCAT+GGG | 0.515977 | 8.3:-10646571 | None:intergenic |
| CGTGGAACAGTTACTTGCAA+AGG | 0.522560 | 8.3:+10645962 | MS.gene58280:CDS |
| CTTTCCTGCATGCTTCAACA+AGG | 0.527070 | 8.3:-10647368 | None:intergenic |
| ACAACTTTGTAAGATGCCTC+AGG | 0.530129 | 8.3:-10647793 | None:intergenic |
| TATGCGCGCTTAGGAGCATC+AGG | 0.530362 | 8.3:-10647832 | None:intergenic |
| TAAACCTTGTTGAAGCATGC+AGG | 0.536699 | 8.3:+10647364 | MS.gene58280:CDS |
| AACTTACAAATTGAAGAGAT+GGG | 0.550774 | 8.3:-10646046 | None:intergenic |
| GGGGCAAGCAAATCCCAGCC+TGG | 0.552735 | 8.3:-10646551 | None:intergenic |
| TACCTTTGCGAAGTTGAGGA+AGG | 0.555784 | 8.3:-10645768 | None:intergenic |
| GTGTTACCTTTGCGAAGTTG+AGG | 0.563021 | 8.3:-10645772 | None:intergenic |
| TGAGGCATCTTACAAAGTTG+TGG | 0.567286 | 8.3:+10647795 | MS.gene58280:CDS |
| TATGGGGCAGCTACTCAATC+CGG | 0.569169 | 8.3:+10647443 | MS.gene58280:CDS |
| ACCTTTGCGAAGTTGAGGAA+GGG | 0.578834 | 8.3:-10645767 | None:intergenic |
| TGAAGTAGCTGTGGAATCGT+TGG | 0.581550 | 8.3:+10647765 | MS.gene58280:CDS |
| CCAGCCTGGCCGAAAGCCTG+TGG | 0.586862 | 8.3:-10646537 | None:intergenic |
| ATAACAACATTTCCAGTAGG+AGG | 0.590217 | 8.3:-10647585 | None:intergenic |
| ACGTTGAGAAAGATGTAAGC+CGG | 0.592173 | 8.3:-10647462 | None:intergenic |
| TCCCTTCCTCAACTTCGCAA+AGG | 0.592473 | 8.3:+10645766 | MS.gene58280:CDS |
| TAAGCTAGCTGAAGCAATTG+GGG | 0.593302 | 8.3:+10646490 | MS.gene58280:CDS |
| TCAAGTTGCTGAAGTAGCTG+TGG | 0.611865 | 8.3:+10647756 | MS.gene58280:CDS |
| GTTAAAGTTGATGTCACAGA+GGG | 0.630073 | 8.3:+10646461 | MS.gene58280:CDS |
| ATTGAGTAGCTGCCCCATAG+CGG | 0.638328 | 8.3:-10647439 | None:intergenic |
| AATTACACAATCATAAGACC+TGG | 0.643894 | 8.3:+10647546 | MS.gene58280:CDS |
| TAGTCAATGGAGCCGCTATG+GGG | 0.647798 | 8.3:+10647427 | MS.gene58280:CDS |
| TACACAATCATAAGACCTGG+AGG | 0.652611 | 8.3:+10647549 | MS.gene58280:CDS |
| TCCATAACAACATTTCCAGT+AGG | 0.656385 | 8.3:-10647588 | None:intergenic |
| GGAATCGTTGGCTTATCCTG+AGG | 0.676950 | 8.3:+10647777 | MS.gene58280:CDS |
| ACACAATCATAAGACCTGGA+GGG | 0.693729 | 8.3:+10647550 | MS.gene58280:CDS |
| AGTACTGGGGAAAAGAATCG+TGG | 0.695684 | 8.3:+10645944 | MS.gene58280:CDS |
| AAATGTTGTTATGGAGCCAG+AGG | 0.716025 | 8.3:+10647596 | MS.gene58280:CDS |
| AAATTAACAAACCTTCCATG+GGG | 0.740909 | 8.3:-10646570 | None:intergenic |
| TGGAGCTACTGGTAGTACTG+GGG | 0.742829 | 8.3:+10645931 | MS.gene58280:CDS |
| GGTTAAAGTTGATGTCACAG+AGG | 0.749642 | 8.3:+10646460 | MS.gene58280:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTATTTTTATGTTAGTA+TGG | + | chr8.3:10646648-10646667 | MS.gene58280:intron | 10.0% |
| !! | TATAACAAAATATTGTATAC+TGG | - | chr8.3:10647304-10647323 | None:intergenic | 15.0% |
| !!! | ACAATATTTTGTTATAACAA+AGG | + | chr8.3:10647308-10647327 | MS.gene58280:intron | 15.0% |
| !!! | CAATATTTTGTTATAACAAA+GGG | + | chr8.3:10647309-10647328 | MS.gene58280:intron | 15.0% |
| !!! | TTTTTTTTCTTTTTGTTAGA+TGG | + | chr8.3:10645841-10645860 | MS.gene58280:intron | 15.0% |
| !! | TTTAAATCTAAACCAAGTTA+AGG | - | chr8.3:10646712-10646731 | None:intergenic | 20.0% |
| !!! | AATTTAATTTTCTATGTGTC+AGG | + | chr8.3:10647702-10647721 | MS.gene58280:intron | 20.0% |
| !!! | ATAGTCCAATTTAAGATTAT+TGG | + | chr8.3:10646097-10646116 | MS.gene58280:intron | 20.0% |
| !!! | CTCAATTTTTTATATGTTTG+TGG | + | chr8.3:10647665-10647684 | MS.gene58280:intron | 20.0% |
| !!! | TAGTCCAATTTAAGATTATT+GGG | + | chr8.3:10646098-10646117 | MS.gene58280:intron | 20.0% |
| !!! | TATAATCTGATGCTATTTAA+AGG | - | chr8.3:10647195-10647214 | None:intergenic | 20.0% |
| ! | AAAAAATGCTAGTATTAACG+CGG | - | chr8.3:10645826-10645845 | None:intergenic | 25.0% |
| ! | AAAAATTAACAAACCTTCCA+TGG | - | chr8.3:10646575-10646594 | None:intergenic | 25.0% |
| ! | AAAATTAACAAACCTTCCAT+GGG | - | chr8.3:10646574-10646593 | None:intergenic | 25.0% |
| ! | AAACTTACAAATTGAAGAGA+TGG | - | chr8.3:10646050-10646069 | None:intergenic | 25.0% |
| ! | AACTTACAAATTGAAGAGAT+GGG | - | chr8.3:10646049-10646068 | None:intergenic | 25.0% |
| ! | ACTGTAACACTAATATAATC+AGG | + | chr8.3:10646921-10646940 | MS.gene58280:intron | 25.0% |
| ! | ATGAATCAAAACACAATTGT+TGG | + | chr8.3:10647249-10647268 | MS.gene58280:intron | 25.0% |
| ! | ATGGTAGTAGAATATTAGAA+TGG | + | chr8.3:10646605-10646624 | MS.gene58280:intron | 25.0% |
| ! | CAAATAAACCAATTCAAACA+GGG | + | chr8.3:10646374-10646393 | MS.gene58280:intron | 25.0% |
| ! | TCAAATAAACCAATTCAAAC+AGG | + | chr8.3:10646373-10646392 | MS.gene58280:intron | 25.0% |
| ! | TTAGATTCTTCACTAGTAAA+GGG | + | chr8.3:10647126-10647145 | MS.gene58280:intron | 25.0% |
| ! | TTTAGATTCTTCACTAGTAA+AGG | + | chr8.3:10647125-10647144 | MS.gene58280:intron | 25.0% |
| !! | GGACTATTTTGCAATATAAT+GGG | - | chr8.3:10646084-10646103 | None:intergenic | 25.0% |
| !! | TGGACTATTTTGCAATATAA+TGG | - | chr8.3:10646085-10646104 | None:intergenic | 25.0% |
| !! | TTTTCTTTTTGTTAGATGGA+AGG | + | chr8.3:10645845-10645864 | MS.gene58280:intron | 25.0% |
| !!! | AAAATGATCTCTAGAACTTA+CGG | + | chr8.3:10646737-10646756 | MS.gene58280:intron | 25.0% |
| !!! | ACAATTGTGTTTTGATTCAT+TGG | - | chr8.3:10647249-10647268 | None:intergenic | 25.0% |
| !!! | ATAAGTTCCATTTTAGTCAA+TGG | + | chr8.3:10647414-10647433 | MS.gene58280:CDS | 25.0% |
| AAATTAACAAACCTTCCATG+GGG | - | chr8.3:10646573-10646592 | None:intergenic | 30.0% | |
| AACAAAGGGATATATTATGC+AGG | + | chr8.3:10647323-10647342 | MS.gene58280:intron | 30.0% | |
| AATTACACAATCATAAGACC+TGG | + | chr8.3:10647546-10647565 | MS.gene58280:CDS | 30.0% | |
| ACTAGTGAAGAATCTAAACT+TGG | - | chr8.3:10647123-10647142 | None:intergenic | 30.0% | |
| ACTCTATCTAATATCCAGAA+TGG | - | chr8.3:10647011-10647030 | None:intergenic | 30.0% | |
| AGTAGGCTACATTATATACA+TGG | + | chr8.3:10646845-10646864 | MS.gene58280:intron | 30.0% | |
| ATCAAAACACAATTGTTGGT+TGG | + | chr8.3:10647253-10647272 | MS.gene58280:intron | 30.0% | |
| CAGACCCAATAATCTTAAAT+TGG | - | chr8.3:10646105-10646124 | None:intergenic | 30.0% | |
| GAAAATCATATCAGGAAATC+TGG | + | chr8.3:10647519-10647538 | MS.gene58280:CDS | 30.0% | |
| GAATGACATGATGTGTAATT+TGG | + | chr8.3:10646413-10646432 | MS.gene58280:intron | 30.0% | |
| GTACAAGTTCTGTAAAAGTT+TGG | + | chr8.3:10646806-10646825 | MS.gene58280:intron | 30.0% | |
| TAGAACTTACGGTGATTATT+GGG | + | chr8.3:10646748-10646767 | MS.gene58280:intron | 30.0% | |
| TATAAACAATTTGCCCTGTT+TGG | + | chr8.3:10646125-10646144 | MS.gene58280:intron | 30.0% | |
| ! | AAGAAGAAAGTTTTTGTTGC+TGG | + | chr8.3:10645911-10645930 | MS.gene58280:intron | 30.0% |
| ! | ATTAAGTTGTTGATCCAAAC+AGG | - | chr8.3:10646142-10646161 | None:intergenic | 30.0% |
| ! | TACATCTTTCTCAACGTTTT+CGG | + | chr8.3:10647468-10647487 | MS.gene58280:CDS | 30.0% |
| ! | TCAAAACACAATTGTTGGTT+GGG | + | chr8.3:10647254-10647273 | MS.gene58280:intron | 30.0% |
| ! | TTAAGTTGTTGATCCAAACA+GGG | - | chr8.3:10646141-10646160 | None:intergenic | 30.0% |
| !! | ATTATGCAGGTTGACAATTT+TGG | + | chr8.3:10647336-10647355 | MS.gene58280:intron | 30.0% |
| !!! | GTGTTTGATACTTTTGAAGT+AGG | + | chr8.3:10646828-10646847 | MS.gene58280:intron | 30.0% |
| AAGCTATCATGTAGAGCTTA+TGG | + | chr8.3:10646271-10646290 | MS.gene58280:intron | 35.0% | |
| ATAACAACATTTCCAGTAGG+AGG | - | chr8.3:10647588-10647607 | None:intergenic | 35.0% | |
| ATAAGCTAGCTGAAGCAATT+GGG | + | chr8.3:10646489-10646508 | MS.gene58280:CDS | 35.0% | |
| ATATGTGTGAGTTCATATGC+AGG | + | chr8.3:10646439-10646458 | MS.gene58280:intron | 35.0% | |
| CTAGAACTTACGGTGATTAT+TGG | + | chr8.3:10646747-10646766 | MS.gene58280:intron | 35.0% | |
| CTGGATATTAGATAGAGTTG+AGG | + | chr8.3:10647013-10647032 | MS.gene58280:intron | 35.0% | |
| GAAATTTAAGCAAACACCTC+TGG | - | chr8.3:10647615-10647634 | None:intergenic | 35.0% | |
| GGATATGGAACCTTCATAAA+GGG | - | chr8.3:10647731-10647750 | None:intergenic | 35.0% | |
| GGTTACTAAAACAAGAACCA+CGG | - | chr8.3:10646984-10647003 | None:intergenic | 35.0% | |
| TACAAATTGAAGAGATGGGT+TGG | - | chr8.3:10646045-10646064 | None:intergenic | 35.0% | |
| TACAGGCAGAAAATCATATC+AGG | + | chr8.3:10647511-10647530 | MS.gene58280:CDS | 35.0% | |
| TCCATAACAACATTTCCAGT+AGG | - | chr8.3:10647591-10647610 | None:intergenic | 35.0% | |
| TCCTACTGGAAATGTTGTTA+TGG | + | chr8.3:10647587-10647606 | MS.gene58280:CDS | 35.0% | |
| TGGATATGGAACCTTCATAA+AGG | - | chr8.3:10647732-10647751 | None:intergenic | 35.0% | |
| ! | TGGGTGCAACATATTTTCAT+TGG | + | chr8.3:10646767-10646786 | MS.gene58280:intron | 35.0% |
| !! | GTTAAAGTTGATGTCACAGA+GGG | + | chr8.3:10646461-10646480 | MS.gene58280:CDS | 35.0% |
| AAATGTTGTTATGGAGCCAG+AGG | + | chr8.3:10647596-10647615 | MS.gene58280:CDS | 40.0% | |
| ACAACTTTGTAAGATGCCTC+AGG | - | chr8.3:10647796-10647815 | None:intergenic | 40.0% | |
| ACACAATCATAAGACCTGGA+GGG | + | chr8.3:10647550-10647569 | MS.gene58280:CDS | 40.0% | |
| ACAGTTTAACACGCAGAAAC+CGG | - | chr8.3:10646906-10646925 | None:intergenic | 40.0% | |
| ACGTTGAGAAAGATGTAAGC+CGG | - | chr8.3:10647465-10647484 | None:intergenic | 40.0% | |
| AGCAACTTGATCTCTGGATA+TGG | - | chr8.3:10647746-10647765 | None:intergenic | 40.0% | |
| CACCTTAGTGGCAAAATTAC+AGG | + | chr8.3:10647494-10647513 | MS.gene58280:CDS | 40.0% | |
| CTATGGAACCAAAGAGATCA+TGG | - | chr8.3:10647858-10647877 | None:intergenic | 40.0% | |
| GATAAGCTAGCTGAAGCAAT+TGG | + | chr8.3:10646488-10646507 | MS.gene58280:CDS | 40.0% | |
| GTGGAACAGTTACTTGCAAA+GGG | + | chr8.3:10645963-10645982 | MS.gene58280:CDS | 40.0% | |
| TAAACCTTGTTGAAGCATGC+AGG | + | chr8.3:10647364-10647383 | MS.gene58280:CDS | 40.0% | |
| TAAGCTAGCTGAAGCAATTG+GGG | + | chr8.3:10646490-10646509 | MS.gene58280:CDS | 40.0% | |
| TACACAATCATAAGACCTGG+AGG | + | chr8.3:10647549-10647568 | MS.gene58280:CDS | 40.0% | |
| TACTTCAGCAACTTGATCTC+TGG | - | chr8.3:10647752-10647771 | None:intergenic | 40.0% | |
| TCTAATATCCAGAATGGCGT+TGG | - | chr8.3:10647005-10647024 | None:intergenic | 40.0% | |
| TTGAAAAACGATCCTCCTAC+TGG | + | chr8.3:10647573-10647592 | MS.gene58280:CDS | 40.0% | |
| TTTAGTAACCAACGCCATTC+TGG | + | chr8.3:10646994-10647013 | MS.gene58280:intron | 40.0% | |
| ! | GTTAATGAGTGGCCTTAACT+TGG | + | chr8.3:10646697-10646716 | MS.gene58280:intron | 40.0% |
| ! | TGAGGCATCTTACAAAGTTG+TGG | + | chr8.3:10647795-10647814 | MS.gene58280:CDS | 40.0% |
| ! | TGCCTGTAATTTTGCCACTA+AGG | - | chr8.3:10647499-10647518 | None:intergenic | 40.0% |
| ! | TTGATTCCACATTTTCCCTC+CGG | + | chr8.3:10646884-10646903 | MS.gene58280:intron | 40.0% |
| !! | CAAGTACTTCTGAGACTCTA+TGG | - | chr8.3:10646338-10646357 | None:intergenic | 40.0% |
| !! | GGTTAAAGTTGATGTCACAG+AGG | + | chr8.3:10646460-10646479 | MS.gene58280:intron | 40.0% |
| !!! | AAGGGTTTTGCTGTTAAAGC+TGG | + | chr8.3:10645981-10646000 | MS.gene58280:CDS | 40.0% |
| !!! | AGGGTTTTGCTGTTAAAGCT+GGG | + | chr8.3:10645982-10646001 | MS.gene58280:CDS | 40.0% |
| ACACACAGCCCTGTTTGAAT+TGG | - | chr8.3:10646385-10646404 | None:intergenic | 45.0% | |
| ACCTTTGCGAAGTTGAGGAA+GGG | - | chr8.3:10645770-10645789 | None:intergenic | 45.0% | |
| CGTGGAACAGTTACTTGCAA+AGG | + | chr8.3:10645962-10645981 | MS.gene58280:CDS | 45.0% | |
| CTTTCCTGCATGCTTCAACA+AGG | - | chr8.3:10647371-10647390 | None:intergenic | 45.0% | |
| GATAGCTTTCATTCATGCCG+TGG | + | chr8.3:10646964-10646983 | MS.gene58280:intron | 45.0% | |
| GTGTTACCTTTGCGAAGTTG+AGG | - | chr8.3:10645775-10645794 | None:intergenic | 45.0% | |
| GTTGAGGAAGGGAAGAGATT+TGG | - | chr8.3:10645759-10645778 | None:intergenic | 45.0% | |
| TAAAGCTGGGGTTAGAGACT+TGG | + | chr8.3:10645995-10646014 | MS.gene58280:CDS | 45.0% | |
| TAAGGCCACTCATTAACCAG+TGG | - | chr8.3:10646694-10646713 | None:intergenic | 45.0% | |
| TACCTTTGCGAAGTTGAGGA+AGG | - | chr8.3:10645771-10645790 | None:intergenic | 45.0% | |
| TGAAATCACTCAGCAAGCAG+TGG | + | chr8.3:10645871-10645890 | MS.gene58280:intron | 45.0% | |
| TGAAGTAGCTGTGGAATCGT+TGG | + | chr8.3:10647765-10647784 | MS.gene58280:CDS | 45.0% | |
| TGTCAGGACACCCTTTATGA+AGG | + | chr8.3:10647718-10647737 | MS.gene58280:intron | 45.0% | |
| TTAGTCAATGGAGCCGCTAT+GGG | + | chr8.3:10647426-10647445 | MS.gene58280:CDS | 45.0% | |
| TTTAACACGCAGAAACCGGA+GGG | - | chr8.3:10646902-10646921 | None:intergenic | 45.0% | |
| TTTAGTCAATGGAGCCGCTA+TGG | + | chr8.3:10647425-10647444 | MS.gene58280:CDS | 45.0% | |
| ! | AGCGGCTCCATTGACTAAAA+TGG | - | chr8.3:10647424-10647443 | None:intergenic | 45.0% |
| ! | AGTACTGGGGAAAAGAATCG+TGG | + | chr8.3:10645944-10645963 | MS.gene58280:CDS | 45.0% |
| ! | ATTGTTGGTTGGGACTTCAG+TGG | + | chr8.3:10647264-10647283 | MS.gene58280:intron | 45.0% |
| ! | GTTTTTGTTGCTGGAGCTAC+TGG | + | chr8.3:10645920-10645939 | MS.gene58280:CDS | 45.0% |
| ! | TAGTTTGTGCCACAGGCTTT+CGG | + | chr8.3:10646528-10646547 | MS.gene58280:CDS | 45.0% |
| ! | TCAAGTTGCTGAAGTAGCTG+TGG | + | chr8.3:10647756-10647775 | MS.gene58280:CDS | 45.0% |
| !! | CTTCAGTGGATTATTCTCGC+TGG | + | chr8.3:10647278-10647297 | MS.gene58280:intron | 45.0% |
| !! | GTTTTGATATCAGCTGCCAC+TGG | + | chr8.3:10646675-10646694 | MS.gene58280:intron | 45.0% |
| !!! | GGGTTTTGCTGTTAAAGCTG+GGG | + | chr8.3:10645983-10646002 | MS.gene58280:CDS | 45.0% |
| !!! | TTAATTTTTTGTTTATATTA+TGG | + | chr8.3:10646586-10646605 | MS.gene58280:intron | 5.0% |
| AGATCATGGTATGCGCGCTT+AGG | - | chr8.3:10647844-10647863 | None:intergenic | 50.0% | |
| ATTGAGTAGCTGCCCCATAG+CGG | - | chr8.3:10647442-10647461 | None:intergenic | 50.0% | |
| CAGAAACCGGAGGGAAAATG+TGG | - | chr8.3:10646893-10646912 | None:intergenic | 50.0% | |
| CGCGCATACCATGATCTCTT+TGG | + | chr8.3:10647847-10647866 | MS.gene58280:CDS | 50.0% | |
| CTGGAGCTACTGGTAGTACT+GGG | + | chr8.3:10645930-10645949 | MS.gene58280:CDS | 50.0% | |
| GTTTAACACGCAGAAACCGG+AGG | - | chr8.3:10646903-10646922 | None:intergenic | 50.0% | |
| TAGTCAATGGAGCCGCTATG+GGG | + | chr8.3:10647427-10647446 | MS.gene58280:CDS | 50.0% | |
| TATGGGGCAGCTACTCAATC+CGG | + | chr8.3:10647443-10647462 | MS.gene58280:CDS | 50.0% | |
| TCCCTTCCTCAACTTCGCAA+AGG | + | chr8.3:10645766-10645785 | MS.gene58280:CDS | 50.0% | |
| TGGAGCTACTGGTAGTACTG+GGG | + | chr8.3:10645931-10645950 | MS.gene58280:CDS | 50.0% | |
| ! | AGCTGCCACTGGTTAATGAG+TGG | + | chr8.3:10646686-10646705 | MS.gene58280:intron | 50.0% |
| ! | CGTTTTCGGACTCACCTTAG+TGG | + | chr8.3:10647482-10647501 | MS.gene58280:CDS | 50.0% |
| ! | GAAGCAGTAGTTTGTGCCAC+AGG | + | chr8.3:10646521-10646540 | MS.gene58280:CDS | 50.0% |
| !! | GGAATCGTTGGCTTATCCTG+AGG | + | chr8.3:10647777-10647796 | MS.gene58280:CDS | 50.0% |
| !! | GGATCGTTTTTCAACCCTCC+AGG | - | chr8.3:10647567-10647586 | None:intergenic | 50.0% |
| GCTGGAGCTACTGGTAGTAC+TGG | + | chr8.3:10645929-10645948 | MS.gene58280:CDS | 55.0% | |
| ! | GGATTTGCTTGCCCCATGGA+AGG | + | chr8.3:10646559-10646578 | MS.gene58280:CDS | 55.0% |
| !! | TATGCGCGCTTAGGAGCATC+AGG | - | chr8.3:10647835-10647854 | None:intergenic | 55.0% |
| ! | GCTGGGATTTGCTTGCCCCA+TGG | + | chr8.3:10646555-10646574 | MS.gene58280:CDS | 60.0% |
| CACAGGCTTTCGGCCAGGCT+GGG | + | chr8.3:10646538-10646557 | MS.gene58280:CDS | 65.0% | |
| GGGGCAAGCAAATCCCAGCC+TGG | - | chr8.3:10646554-10646573 | None:intergenic | 65.0% | |
| TGTGCCACAGGCTTTCGGCC+AGG | + | chr8.3:10646533-10646552 | MS.gene58280:CDS | 65.0% | |
| CCACAGGCTTTCGGCCAGGC+TGG | + | chr8.3:10646537-10646556 | MS.gene58280:CDS | 70.0% | |
| CCAGCCTGGCCGAAAGCCTG+TGG | - | chr8.3:10646540-10646559 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 10645754 | 10647888 | 10645754 | ID=MS.gene58280 |
| chr8.3 | mRNA | 10645754 | 10647888 | 10645754 | ID=MS.gene58280.t1;Parent=MS.gene58280 |
| chr8.3 | exon | 10645754 | 10645787 | 10645754 | ID=MS.gene58280.t1.exon1;Parent=MS.gene58280.t1 |
| chr8.3 | CDS | 10645754 | 10645787 | 10645754 | ID=cds.MS.gene58280.t1;Parent=MS.gene58280.t1 |
| chr8.3 | exon | 10645914 | 10646061 | 10645914 | ID=MS.gene58280.t1.exon2;Parent=MS.gene58280.t1 |
| chr8.3 | CDS | 10645914 | 10646061 | 10645914 | ID=cds.MS.gene58280.t1;Parent=MS.gene58280.t1 |
| chr8.3 | exon | 10646461 | 10646580 | 10646461 | ID=MS.gene58280.t1.exon3;Parent=MS.gene58280.t1 |
| chr8.3 | CDS | 10646461 | 10646580 | 10646461 | ID=cds.MS.gene58280.t1;Parent=MS.gene58280.t1 |
| chr8.3 | exon | 10647345 | 10647617 | 10647345 | ID=MS.gene58280.t1.exon4;Parent=MS.gene58280.t1 |
| chr8.3 | CDS | 10647345 | 10647617 | 10647345 | ID=cds.MS.gene58280.t1;Parent=MS.gene58280.t1 |
| chr8.3 | exon | 10647724 | 10647888 | 10647724 | ID=MS.gene58280.t1.exon5;Parent=MS.gene58280.t1 |
| chr8.3 | CDS | 10647724 | 10647888 | 10647724 | ID=cds.MS.gene58280.t1;Parent=MS.gene58280.t1 |
| Gene Sequence |
| Protein sequence |
