AlfalfaGEDB | MS.gene63434

M. sativa cultivar XinJiangDaYe / MS.gene63434

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0005488 GO:0005515 GO:0008150 GO:0008152 GO:0016491 GO:0055114 GO:0097159 GO:1901363
PFAM: PF01593.27 PF04433.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63434.t1	XP_013453023.1	96.3	724	25	1	85	806	89	812	0.00E+00	1383.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63434.t1	Q8VXV7	68.4	708	212	4	85	785	135	837	1.3e-281	970.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63434.t1	A0A072UC64	96.3	724	25	1	85	806	89	812	0.0e+00	1383.6

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene63434.t1	TR	SWI/SNF-SWI3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene63434	0.82372	1.19E-53	-1.69E-46
MS.gene049159	MS.gene63434	0.803036	4.22E-49	-1.69E-46
MS.gene049190	MS.gene63434	0.835167	1.96E-56	-1.69E-46
MS.gene049341	MS.gene63434	0.817688	2.90E-52	-1.69E-46
MS.gene049821	MS.gene63434	0.815145	1.07E-51	-1.69E-46
MS.gene049850	MS.gene63434	0.833145	6.31E-56	-1.69E-46
MS.gene050020	MS.gene63434	0.839409	1.61E-57	-1.69E-46
MS.gene050689	MS.gene63434	0.801083	1.06E-48	-1.69E-46
MS.gene050807	MS.gene63434	0.820418	6.93E-53	-1.69E-46
MS.gene050901	MS.gene63434	0.809966	1.46E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63434.t1	MTR_6g084700	95.813	812	28	2	1	806	1	812	0.0	1598
MS.gene63434.t1	MTR_1g050535	52.278	790	307	10	66	797	37	814	0.0	759
MS.gene63434.t1	MTR_1g050535	52.025	790	309	9	66	797	37	814	0.0	758
MS.gene63434.t1	MTR_8g464450	51.297	694	311	8	102	781	52	732	0.0	701
MS.gene63434.t1	MTR_3g055090	50.071	707	326	9	93	785	39	732	0.0	698
MS.gene63434.t1	MTR_3g113170	37.691	589	314	14	209	757	874	1449	1.26e-96	331
MS.gene63434.t1	MTR_3g113170	37.691	589	314	14	209	757	874	1449	1.51e-96	331
MS.gene63434.t1	MTR_1g023510	39.431	492	238	11	218	660	867	1347	1.36e-95	328
MS.gene63434.t1	MTR_3g064370	32.636	478	283	13	217	681	29	480	1.63e-55	199
MS.gene63434.t1	MTR_5g090300	35.043	468	263	15	217	669	29	470	2.60e-49	181

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene63434.t1	AT1G62830	67.667	733	221	5	63	785	111	837	0.0	997
MS.gene63434.t1	AT3G10390	54.866	709	284	7	103	785	127	825	0.0	763
MS.gene63434.t1	AT3G10390	54.866	709	284	7	103	785	75	773	0.0	762
MS.gene63434.t1	AT3G10390	54.866	709	284	7	103	785	127	825	0.0	762
MS.gene63434.t1	AT3G10390	54.866	709	284	7	103	785	75	773	0.0	758
MS.gene63434.t1	AT3G13682	52.459	732	313	11	69	781	4	719	0.0	709
MS.gene63434.t1	AT4G16310	38.294	504	245	10	213	662	615	1106	3.58e-92	318
MS.gene63434.t1	AT4G16310	38.294	504	245	10	213	662	615	1106	3.58e-92	318
MS.gene63434.t1	AT4G16310	38.294	504	245	10	213	662	615	1106	3.58e-92	318
MS.gene63434.t1	AT4G16310	38.294	504	245	10	213	662	615	1106	3.58e-92	318

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Find 214 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGTTAAATCGCGATTT+TGG	0.111042	6.3:-78856128	MS.gene63434:CDS
AAACCTAAGAGCAGCTTCTC+CGG	0.481395	6.3:+78856742	None:intergenic
AAATGGTCTTGTCCATGGGA+AGG	0.604796	6.3:-78856012	MS.gene63434:CDS
AACTAGATTCAACATCATTC+GGG	0.390439	6.3:+78856273	None:intergenic
AAGACAAAGAGGATGTTTAA+TGG	0.351401	6.3:-78857625	MS.gene63434:CDS
AAGAGAGGATGTTGTTGAAT+TGG	0.333502	6.3:-78857276	MS.gene63434:CDS
AAGAGGATGTTTAATGGTGA+TGG	0.532429	6.3:-78857619	MS.gene63434:CDS
AAGAGTGTTGATGTTCCTTT+AGG	0.261370	6.3:-78857349	MS.gene63434:CDS
AAGCTCCCGAAATTCAGGTC+AGG	0.529964	6.3:+78856317	None:intergenic
AAGGAAGGGATCGACCGGGT+GGG	0.625021	6.3:-78857654	MS.gene63434:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACTAGATTCAACATCATTC+GGG	+	chr6.3:78858106-78858125	None:intergenic	30.0%
AAGACAAAGAGGATGTTTAA+TGG	-	chr6.3:78856751-78856770	MS.gene63434:CDS	30.0%
AGATTGAAGGAGATGAAAAT+CGG	-	chr6.3:78858222-78858241	MS.gene63434:CDS	30.0%
ATACTTAGGGTTAAAATTGG+AGG	-	chr6.3:78858128-78858147	MS.gene63434:CDS	30.0%
ATGCATAAAGATAAAGACTG+GGG	+	chr6.3:78858169-78858188	None:intergenic	30.0%
CAATGCATAAAGATAAAGAC+TGG	+	chr6.3:78858171-78858190	None:intergenic	30.0%
GAACTAGATTCAACATCATT+CGG	+	chr6.3:78858107-78858126	None:intergenic	30.0%
GAATTTGTCTATGGCTTATT+GGG	-	chr6.3:78857164-78857183	MS.gene63434:CDS	30.0%
GTATTAAGTATGGAAGTGAT+GGG	-	chr6.3:78857304-78857323	MS.gene63434:CDS	30.0%
GTTTCCTGTAGATTCTTTAA+CGG	-	chr6.3:78856342-78856361	MS.gene63434:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.3	gene	78855989	78858409	78855989	ID=MS.gene63434
chr6.3	mRNA	78855989	78858409	78855989	ID=MS.gene63434.t1;Parent=MS.gene63434
chr6.3	exon	78855989	78858409	78855989	ID=MS.gene63434.t1.exon1;Parent=MS.gene63434.t1
chr6.3	CDS	78855989	78858409	78855989	ID=cds.MS.gene63434.t1;Parent=MS.gene63434.t1

Gene Sequence

>MS.gene63434

ATGCACTCACCTTCCAACACTGAGCTAAACTCAGAACAACCCATTGATACACAAATGTCAGAACCCTCATCGGAACCACCGTCACAACCACCGTCGGAATCACCACAACCCCAAAACGACACCGTAACAATCTCCCCTGAAAACCCACCTCAAAATTCCTCCGATTCATCCTCCCAACAACAACAGCAACAACAAGAACAAGATCCAAACCCTAACCCTACCCTACCACGAAAACGACGTCGTCGCAAGAAATTCTTCACAGAATTAACCGCAACAACATCCCTTTCCAAAACCCGCAAAAACGACGTCGCTAAAGACTGTGATGACGAAGCCCTGATTGCAATTTCAGTAGGGTTTCCTGTAGATTCTTTAACGGAGGAAGAAATTGAAGCGAATGTGGTGAAAACAATCGGTGGTTCGGAGCAATCGAATTACATTATTGTTAGGAATCATATTCTTGCACGGTGGAGATCGGATGTGAATGTTTGGTTGACTTATGATAAAGCCGTGAAGTCGATTCGGTCGGAACATAAGGGTTTGGTTGATGTTGCTTATAGGTTTTTGATTGAGCATGGTTATATTAATTTCGGTGTTTCACCGGAGATTAAAGCGAAGAAAAATAGTTCTTTTGATGGAATTGAGAGAGGGAGTGTGATTGTTATTGGTGCCGGGTTGGCGGGTTTGGTTGCCGCGCGACAATTAGTGTTTTTAGGGTTTAAAGTTTGTATTTTGGAAGGAAGGGATCGACCGGGTGGGAGGGTTAAGACAAAGAGGATGTTTAATGGTGATGGTGGTGGTGATGGTCTTGTGGCTGCGGCGGATTTAGGTGGTAGTGTTCTTACTGGTGTTAATGGGAATCCACTTGGTGTTCTTGCTAGACAATTAGATTTGCCACTTCATAAGGTTAGGGATGTTTGTCCACTTTATATGCCGGATGGAAAATGTGTTGATTCTGAGGTTGATTCTAGGGTTGAGGTTTTGTTTAATAAGTTGTTAGAGAGGGTTTGTAAGCTTAGGCAAGCTATGATTGATGAGGTTAAGAGTGTTGATGTTCCTTTAGGGACAGCGTTGGAGGCGTTTCGTAGGGTTTATAAGGTTGCGGAGGATAAAGAAGAGAGGATGTTGTTGAATTGGCATCTTGCTAATTTGGAGTATGCAAATGCTACTCTTATGTCGAATTTGTCTATGGCTTATTGGGATCAGGATGATCCTTATGAGATGGGTGGTGATCATTGTTTCATTCCTGGAGGGAATGAAACGTTTGTTCGCGTGTTGGCTGAGGGTCTTCCGATTTTCTATGGGAGGACTGTGGAGTGTATTAAGTATGGAAGTGATGGGGTGCTGGTGTGTACTGATGGGCAGCAGTTTCGTGCGGACATGGCGCTTTGTACTGTGCCTTTAGGGGTTCTTAAGAAAGAATCGATTAAGTTTGTCCCTGATCTTCCTCAGTGTAAGAAGGATGCAATTCATAGGTTAGGATTCGGGTTGCTGAATAAGGTTGTGATGCTGTTTCCGACTAATTTTTGGGGTGGGAATATCGATACATTTGGTCATTTGACCGAGGATTTGAGTATGAGGGGAGAGTTTTTTCTGTTCTATAGCTATGCTTCTGTGTCCGGAGGCCCGCTTCTTGTGGCTCTTGTCGCCGGAGAAGCTGCTCTTAGGTTTGAGATGATGTCGCCGTTGGAGTCTGTCAAAAGGGTGTTGGATGTTTTGAAGGATATTTTTCATCCGAAGGGGATTGTTGTTCCGGAGCCCGTTCAGGCAGTCTGTACTCGATGGGGAAAAGATGAATTCACGTACGGATCTTATTCTTATGTTGCTGTTGGATCTTCAGGAGATGATTACGATATACTTTCAGAGAGTATTGGAGACGGGAGGGTGTTCTTTGCTGGAGAGGCAACTAGCAAACAGTACCCTGCAACAATGCATGGAGCATTCATGAGTGGAATGAGAGAAGCTGCAAACATTTTAAGAGTTACAAAACGGAAGTCTCAAAGTTCAATTTCATCTAACACAACAAAAAACATCGATGAGGAGACTGACGATTTAGACAAACTATTTGTGAAACCTGACCTGAATTTCGGGAGCTTCTCTGCTTTGTTTAATCCAAACCCGAATGATGTTGAATCTAGTTCAATACTTAGGGTTAAAATTGGAGGAGCTGTATCCAATTCCCCCAGTCTTTATCTTTATGCATTGCTTTCGAAGAAGCAGGTCATTGAGTTGAGTCAGATTGAAGGAGATGAAAATCGGATGAAAATGTTAAATCGCGATTTTGGGGTCAGTTTAGTCGGGAAAAAGGGTTTAAGTAGCACTGCTGAATCTCTTATTGCCAACATAAAGTTGCTGAGACCTCAGCTTAATGAAGCAGAAAATGGTCTTGTCCATGGGAAGGATAGTTGTATCATGGAAGAATAG

Protein sequence

>MS.gene63434.t1

MHSPSNTELNSEQPIDTQMSEPSSEPPSQPPSESPQPQNDTVTISPENPPQNSSDSSSQQQQQQQEQDPNPNPTLPRKRRRRKKFFTELTATTSLSKTRKNDVAKDCDDEALIAISVGFPVDSLTEEEIEANVVKTIGGSEQSNYIIVRNHILARWRSDVNVWLTYDKAVKSIRSEHKGLVDVAYRFLIEHGYINFGVSPEIKAKKNSSFDGIERGSVIVIGAGLAGLVAARQLVFLGFKVCILEGRDRPGGRVKTKRMFNGDGGGDGLVAAADLGGSVLTGVNGNPLGVLARQLDLPLHKVRDVCPLYMPDGKCVDSEVDSRVEVLFNKLLERVCKLRQAMIDEVKSVDVPLGTALEAFRRVYKVAEDKEERMLLNWHLANLEYANATLMSNLSMAYWDQDDPYEMGGDHCFIPGGNETFVRVLAEGLPIFYGRTVECIKYGSDGVLVCTDGQQFRADMALCTVPLGVLKKESIKFVPDLPQCKKDAIHRLGFGLLNKVVMLFPTNFWGGNIDTFGHLTEDLSMRGEFFLFYSYASVSGGPLLVALVAGEAALRFEMMSPLESVKRVLDVLKDIFHPKGIVVPEPVQAVCTRWGKDEFTYGSYSYVAVGSSGDDYDILSESIGDGRVFFAGEATSKQYPATMHGAFMSGMREAANILRVTKRKSQSSISSNTTKNIDEETDDLDKLFVKPDLNFGSFSALFNPNPNDVESSSILRVKIGGAVSNSPSLYLYALLSKKQVIELSQIEGDENRMKMLNRDFGVSLVGKKGLSSTAESLIANIKLLRPQLNEAENGLVHGKDSCIMEE