AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene63434


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63434.t1 MTR_6g084700 95.813 812 28 2 1 806 1 812 0.0 1598
MS.gene63434.t1 MTR_1g050535 52.278 790 307 10 66 797 37 814 0.0 759
MS.gene63434.t1 MTR_1g050535 52.025 790 309 9 66 797 37 814 0.0 758
MS.gene63434.t1 MTR_8g464450 51.297 694 311 8 102 781 52 732 0.0 701
MS.gene63434.t1 MTR_3g055090 50.071 707 326 9 93 785 39 732 0.0 698
MS.gene63434.t1 MTR_3g113170 37.691 589 314 14 209 757 874 1449 1.26e-96 331
MS.gene63434.t1 MTR_3g113170 37.691 589 314 14 209 757 874 1449 1.51e-96 331
MS.gene63434.t1 MTR_1g023510 39.431 492 238 11 218 660 867 1347 1.36e-95 328
MS.gene63434.t1 MTR_3g064370 32.636 478 283 13 217 681 29 480 1.63e-55 199
MS.gene63434.t1 MTR_5g090300 35.043 468 263 15 217 669 29 470 2.60e-49 181
MS.gene63434.t1 MTR_3g449620 33.836 464 268 14 217 666 29 467 9.67e-48 177
MS.gene63434.t1 MTR_3g064370 30.952 420 260 12 275 681 1 403 6.69e-42 159
MS.gene63434.t1 MTR_3g064370 31.635 373 223 9 217 576 29 382 1.30e-38 148
MS.gene63434.t1 MTR_3g054420 38.462 195 115 4 604 797 88 278 1.95e-34 133
MS.gene63434.t1 MTR_2g039160 26.667 555 278 22 213 659 3 536 1.59e-32 133
MS.gene63434.t1 MTR_3g055020 37.306 193 112 5 594 785 245 429 2.94e-30 125
MS.gene63434.t1 MTR_3g033000 23.414 457 292 16 241 673 33 455 1.23e-23 105
MS.gene63434.t1 MTR_3g033000 23.678 397 247 15 241 613 33 397 1.56e-15 80.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene63434.t1 AT1G62830 67.667 733 221 5 63 785 111 837 0.0 997
MS.gene63434.t1 AT3G10390 54.866 709 284 7 103 785 127 825 0.0 763
MS.gene63434.t1 AT3G10390 54.866 709 284 7 103 785 75 773 0.0 762
MS.gene63434.t1 AT3G10390 54.866 709 284 7 103 785 127 825 0.0 762
MS.gene63434.t1 AT3G10390 54.866 709 284 7 103 785 75 773 0.0 758
MS.gene63434.t1 AT3G13682 52.459 732 313 11 69 781 4 719 0.0 709
MS.gene63434.t1 AT4G16310 38.294 504 245 10 213 662 615 1106 3.58e-92 318
MS.gene63434.t1 AT4G16310 38.294 504 245 10 213 662 615 1106 3.58e-92 318
MS.gene63434.t1 AT4G16310 38.294 504 245 10 213 662 615 1106 3.58e-92 318
MS.gene63434.t1 AT4G16310 38.294 504 245 10 213 662 615 1106 3.58e-92 318
MS.gene63434.t1 AT4G16310 38.294 504 245 10 213 662 615 1106 3.58e-92 318
MS.gene63434.t1 AT1G65840 32.708 480 273 16 197 659 15 461 2.01e-56 202
MS.gene63434.t1 AT3G59050 34.096 481 270 17 198 663 17 465 1.64e-55 199
MS.gene63434.t1 AT2G43020 33.850 452 258 15 230 666 42 467 3.34e-54 195
MS.gene63434.t1 AT4G29720 27.087 539 292 20 214 662 3 530 7.82e-32 131
MS.gene63434.t1 AT5G13700 25.393 445 271 17 241 663 30 435 1.78e-25 111

Find 214 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAATGTTAAATCGCGATTT+TGG 0.111042 6.3:-78856128 MS.gene63434:CDS
CGCTTTGTACTGTGCCTTTA+GGG 0.146452 6.3:-78857006 MS.gene63434:CDS
CGAATTTGTCTATGGCTTAT+TGG 0.158377 6.3:-78857213 MS.gene63434:CDS
GCGCTTTGTACTGTGCCTTT+AGG 0.194066 6.3:-78857007 MS.gene63434:CDS
GAATTGGCATCTTGCTAATT+TGG 0.219090 6.3:-78857260 MS.gene63434:CDS
TATGTTGCTGTTGGATCTTC+AGG 0.223351 6.3:-78856572 MS.gene63434:CDS
TCAATACTTAGGGTTAAAAT+TGG 0.230929 6.3:-78856251 MS.gene63434:CDS
AGATTGTTACGGTGTCGTTT+TGG 0.232996 6.3:+78858277 None:intergenic
TTAGGTGGTAGTGTTCTTAC+TGG 0.237707 6.3:-78857565 MS.gene63434:CDS
CTTGTGGCTGCGGCGGATTT+AGG 0.258826 6.3:-78857583 MS.gene63434:CDS
AAGAGTGTTGATGTTCCTTT+AGG 0.261370 6.3:-78857349 MS.gene63434:CDS
TGAAACCTGACCTGAATTTC+GGG 0.264220 6.3:-78856322 MS.gene63434:CDS
GGTCAGTTTAGTCGGGAAAA+AGG 0.264857 6.3:-78856105 MS.gene63434:CDS
GTGAAACCTGACCTGAATTT+CGG 0.266040 6.3:-78856323 MS.gene63434:CDS
AGGATTCGGGTTGCTGAATA+AGG 0.282210 6.3:-78856912 MS.gene63434:CDS
GGTGATCATTGTTTCATTCC+TGG 0.293333 6.3:-78857163 MS.gene63434:CDS
AATCGAATTACATTATTGTT+AGG 0.297551 6.3:-78857963 MS.gene63434:CDS
GAATTTGTCTATGGCTTATT+GGG 0.299575 6.3:-78857212 MS.gene63434:CDS
TGGTGCCGGGTTGGCGGGTT+TGG 0.308679 6.3:-78857725 MS.gene63434:CDS
TCTTATGTCGAATTTGTCTA+TGG 0.312805 6.3:-78857221 MS.gene63434:CDS
CAGAGAAGCTCCCGAAATTC+AGG 0.314383 6.3:+78856312 None:intergenic
TTGATTCTGAGGTTGATTCT+AGG 0.314623 6.3:-78857441 MS.gene63434:CDS
TCCGAAGGGGATTGTTGTTC+CGG 0.317671 6.3:-78856657 MS.gene63434:CDS
GTTTGGTTGATGTTGCTTAT+AGG 0.317936 6.3:-78857852 MS.gene63434:CDS
GAGCATGGTTATATTAATTT+CGG 0.320653 6.3:-78857820 MS.gene63434:CDS
GTCGATTCGGTCGGAACATA+AGG 0.321507 6.3:-78857875 MS.gene63434:CDS
GACGGGAGGGTGTTCTTTGC+TGG 0.323842 6.3:-78856515 MS.gene63434:CDS
CTTGTTGTTGCTGTTGTTGT+TGG 0.324895 6.3:+78858214 None:intergenic
AAGAGAGGATGTTGTTGAAT+TGG 0.333502 6.3:-78857276 MS.gene63434:CDS
TCGCCGGAGAAGCTGCTCTT+AGG 0.336308 6.3:-78856745 MS.gene63434:CDS
AGTGTTCTTACTGGTGTTAA+TGG 0.340415 6.3:-78857556 MS.gene63434:CDS
TTGAATCTAGTTCAATACTT+AGG 0.340716 6.3:-78856262 MS.gene63434:CDS
GAACTAGATTCAACATCATT+CGG 0.349378 6.3:+78856272 None:intergenic
AAGACAAAGAGGATGTTTAA+TGG 0.351401 6.3:-78857625 MS.gene63434:CDS
AGAGGGAGTGTGATTGTTAT+TGG 0.351894 6.3:-78857745 MS.gene63434:CDS
GTCTATGGCTTATTGGGATC+AGG 0.360792 6.3:-78857206 MS.gene63434:CDS
ATTAGATTTGCCACTTCATA+AGG 0.361819 6.3:-78857506 MS.gene63434:CDS
CAATTCATAGGTTAGGATTC+GGG 0.362726 6.3:-78856925 MS.gene63434:CDS
TTCTGACATTTGTGTATCAA+TGG 0.366809 6.3:+78858347 None:intergenic
TTTCGTGGTAGGGTAGGGTT+AGG 0.370277 6.3:+78858177 None:intergenic
CAGCTTAATGAAGCAGAAAA+TGG 0.371967 6.3:-78856029 MS.gene63434:CDS
TGTTGTTCCGGAGCCCGTTC+AGG 0.375878 6.3:-78856645 MS.gene63434:CDS
GGCGTTTCGTAGGGTTTATA+AGG 0.379407 6.3:-78857314 MS.gene63434:CDS
GATTCAACATCATTCGGGTT+TGG 0.381659 6.3:+78856278 None:intergenic
ATTTGCCACTTCATAAGGTT+AGG 0.384593 6.3:-78857501 MS.gene63434:CDS
AGCCACAAGAAGCGGGCCTC+CGG 0.384980 6.3:+78856772 None:intergenic
AACTAGATTCAACATCATTC+GGG 0.390439 6.3:+78856273 None:intergenic
GCAATTCATAGGTTAGGATT+CGG 0.391500 6.3:-78856926 MS.gene63434:CDS
GTGTTCTTACTGGTGTTAAT+GGG 0.393336 6.3:-78857555 MS.gene63434:CDS
GTTATTGGTGCCGGGTTGGC+GGG 0.401105 6.3:-78857730 MS.gene63434:CDS
TCTTATTCTTATGTTGCTGT+TGG 0.401437 6.3:-78856581 MS.gene63434:CDS
TTCTTACACTGAGGAAGATC+AGG 0.405244 6.3:+78856953 None:intergenic
TGAATCTAGTTCAATACTTA+GGG 0.406447 6.3:-78856261 MS.gene63434:CDS
CTTCTTGTGGCTCTTGTCGC+CGG 0.408698 6.3:-78856761 MS.gene63434:CDS
ACTGTGGAGTGTATTAAGTA+TGG 0.411378 6.3:-78857082 MS.gene63434:CDS
GGGGTGCTGGTGTGTACTGA+TGG 0.412671 6.3:-78857052 MS.gene63434:CDS
GAAGGGATCGACCGGGTGGG+AGG 0.413771 6.3:-78857651 MS.gene63434:CDS
AGGGTTTAAAGTTTGTATTT+TGG 0.415674 6.3:-78857677 MS.gene63434:CDS
TGAGGTTGATTCTAGGGTTG+AGG 0.427964 6.3:-78857434 MS.gene63434:CDS
AAGGATGCAATTCATAGGTT+AGG 0.428067 6.3:-78856932 MS.gene63434:CDS
GGTAGGGTAGGGTTAGGGTT+TGG 0.428542 6.3:+78858183 None:intergenic
CGCCGTTGGAGTCTGTCAAA+AGG 0.429103 6.3:-78856709 MS.gene63434:CDS
ACCCTACTGAAATTGCAATC+AGG 0.431945 6.3:+78858055 None:intergenic
GATATACTTTCAGAGAGTAT+TGG 0.432278 6.3:-78856539 MS.gene63434:CDS
GTTTCCTGTAGATTCTTTAA+CGG 0.432536 6.3:-78858034 MS.gene63434:CDS
TTGTTGTTGCTGTTGTTGTT+GGG 0.433511 6.3:+78858215 None:intergenic
GTTTGTTCGCGTGTTGGCTG+AGG 0.436231 6.3:-78857128 MS.gene63434:CDS
TGTTATTGGTGCCGGGTTGG+CGG 0.438476 6.3:-78857731 MS.gene63434:CDS
TGTATTAAGTATGGAAGTGA+TGG 0.438695 6.3:-78857073 MS.gene63434:CDS
TATAGCTATGCTTCTGTGTC+CGG 0.439518 6.3:-78856791 MS.gene63434:CDS
TCGGTCGGAACATAAGGGTT+TGG 0.440153 6.3:-78857869 MS.gene63434:CDS
TTCTGAGTTTAGCTCAGTGT+TGG 0.442111 6.3:+78858374 None:intergenic
AGAGTGTTGATGTTCCTTTA+GGG 0.447197 6.3:-78857348 MS.gene63434:CDS
GGTGGGAATATCGATACATT+TGG 0.450684 6.3:-78856860 MS.gene63434:CDS
TTTGCCACTTCATAAGGTTA+GGG 0.451793 6.3:-78857500 MS.gene63434:CDS
AATGGTGATGGTGGTGGTGA+TGG 0.454716 6.3:-78857607 MS.gene63434:CDS
TCGATTCGGTCGGAACATAA+GGG 0.456626 6.3:-78857874 MS.gene63434:CDS
AATGCTCCATGCATTGTTGC+AGG 0.458661 6.3:+78856470 None:intergenic
CGAGTACAGACTGCCTGAAC+GGG 0.463252 6.3:+78856632 None:intergenic
TGACCGAGGATTTGAGTATG+AGG 0.466769 6.3:-78856832 MS.gene63434:CDS
TGCATTGCTTTCGAAGAAGC+AGG 0.471890 6.3:-78856192 MS.gene63434:CDS
GCAGAAAATGGTCTTGTCCA+TGG 0.472749 6.3:-78856017 MS.gene63434:CDS
ATACTTAGGGTTAAAATTGG+AGG 0.474385 6.3:-78856248 MS.gene63434:CDS
TTCCGACCGAATCGACTTCA+CGG 0.474820 6.3:+78857882 None:intergenic
TGGTGATGGTCTTGTGGCTG+CGG 0.475531 6.3:-78857593 MS.gene63434:CDS
ACAGTCCTCCCATAGAAAAT+CGG 0.475535 6.3:+78857100 None:intergenic
TGATTCTGAGGTTGATTCTA+GGG 0.476292 6.3:-78857440 MS.gene63434:CDS
TCTGACATTTGTGTATCAAT+GGG 0.477512 6.3:+78858348 None:intergenic
AAACCTAAGAGCAGCTTCTC+CGG 0.481395 6.3:+78856742 None:intergenic
TATTAATTTCGGTGTTTCAC+CGG 0.481835 6.3:-78857809 MS.gene63434:CDS
TCCTTTAGGGACAGCGTTGG+AGG 0.482675 6.3:-78857335 MS.gene63434:CDS
GGAGATCGGATGTGAATGTT+TGG 0.485125 6.3:-78857921 MS.gene63434:CDS
TCGTAGGGTTTATAAGGTTG+CGG 0.486017 6.3:-78857308 MS.gene63434:CDS
AGATTGAAGGAGATGAAAAT+CGG 0.486533 6.3:-78856154 MS.gene63434:CDS
GTCCGGAGGCCCGCTTCTTG+TGG 0.487113 6.3:-78856774 MS.gene63434:CDS
GGTGAAAACAATCGGTGGTT+CGG 0.487387 6.3:-78857989 MS.gene63434:CDS
GTATGGAAGTGATGGGGTGC+TGG 0.491183 6.3:-78857065 MS.gene63434:CDS
GTAAGAAGGATGCAATTCAT+AGG 0.491494 6.3:-78856937 MS.gene63434:CDS
TCTTTCTTAAGAACCCCTAA+AGG 0.493042 6.3:+78856992 None:intergenic
GTGTGATTGTTATTGGTGCC+GGG 0.497179 6.3:-78857738 MS.gene63434:CDS
TAGAGAGGGTTTGTAAGCTT+AGG 0.499527 6.3:-78857393 MS.gene63434:CDS
TGATCACCACCCATCTCATA+AGG 0.500642 6.3:+78857178 None:intergenic
GCAGCAGTTTCGTGCGGACA+TGG 0.500964 6.3:-78857029 MS.gene63434:CDS
TGTTTGTCCACTTTATATGC+CGG 0.503225 6.3:-78857476 MS.gene63434:CDS
TTCGTGGTAGGGTAGGGTTA+GGG 0.503684 6.3:+78858178 None:intergenic
CAGCGTTGGAGGCGTTTCGT+AGG 0.505275 6.3:-78857324 MS.gene63434:CDS
GCCTCCAACGCTGTCCCTAA+AGG 0.508131 6.3:+78857334 None:intergenic
TTTGTTCGCGTGTTGGCTGA+GGG 0.509351 6.3:-78857127 MS.gene63434:CDS
CAGACTGCCTGAACGGGCTC+CGG 0.509810 6.3:+78856638 None:intergenic
TTTCCATCCGGCATATAAAG+TGG 0.510259 6.3:+78857469 None:intergenic
TCCTCCGTTAAAGAATCTAC+AGG 0.512209 6.3:+78858030 None:intergenic
CGACAAGAGCCACAAGAAGC+GGG 0.513712 6.3:+78856765 None:intergenic
ATTGAGTTGAGTCAGATTGA+AGG 0.514975 6.3:-78856167 MS.gene63434:CDS
CAATGCATAAAGATAAAGAC+TGG 0.515438 6.3:+78856208 None:intergenic
TTCAGGCAGTCTGTACTCGA+TGG 0.522232 6.3:-78856628 MS.gene63434:CDS
TGGGAAGGATAGTTGTATCA+TGG 0.522562 6.3:-78855997 MS.gene63434:CDS
TTGTTGTTGGGAGGATGAAT+CGG 0.522762 6.3:+78858227 None:intergenic
CAGAAAATGGTCTTGTCCAT+GGG 0.522807 6.3:-78856016 MS.gene63434:CDS
CCCTACTGAAATTGCAATCA+GGG 0.522982 6.3:+78858056 None:intergenic
TTTGGAAGGAAGGGATCGAC+CGG 0.524807 6.3:-78857659 MS.gene63434:CDS
TCCGGAACAACAATCCCCTT+CGG 0.525102 6.3:+78856656 None:intergenic
GTTTGAGATGATGTCGCCGT+TGG 0.525621 6.3:-78856723 MS.gene63434:CDS
TTTGGAAAGGGATGTTGTTG+CGG 0.526010 6.3:+78858119 None:intergenic
AAGCTCCCGAAATTCAGGTC+AGG 0.529964 6.3:+78856317 None:intergenic
TCAGGATGATCCTTATGAGA+TGG 0.530816 6.3:-78857188 MS.gene63434:CDS
GGCAACCAAACCCGCCAACC+CGG 0.531009 6.3:+78857720 None:intergenic
AAGAGGATGTTTAATGGTGA+TGG 0.532429 6.3:-78857619 MS.gene63434:CDS
TCAGGCAGTCTGTACTCGAT+GGG 0.534093 6.3:-78856627 MS.gene63434:CDS
TGATCTTCCTCAGTGTAAGA+AGG 0.534146 6.3:-78856951 MS.gene63434:CDS
TATTCTTGCACGGTGGAGAT+CGG 0.535921 6.3:-78857935 MS.gene63434:CDS
TGTGACGGTGGTTCCGATGA+GGG 0.537164 6.3:+78858324 None:intergenic
ATGTTTAATGGTGATGGTGG+TGG 0.537797 6.3:-78857613 MS.gene63434:CDS
AGTGTGATTGTTATTGGTGC+CGG 0.540389 6.3:-78857739 MS.gene63434:CDS
TCCTGTAGATTCTTTAACGG+AGG 0.543302 6.3:-78858031 MS.gene63434:CDS
CCCTGATTGCAATTTCAGTA+GGG 0.543752 6.3:-78858056 MS.gene63434:CDS
GCCGTTGGAGTCTGTCAAAA+GGG 0.545041 6.3:-78856708 MS.gene63434:CDS
AGCGTTGGAGGCGTTTCGTA+GGG 0.545418 6.3:-78857323 MS.gene63434:CDS
TGTTTAATAAGTTGTTAGAG+AGG 0.546125 6.3:-78857408 MS.gene63434:CDS
CAGGATGATCCTTATGAGAT+GGG 0.547234 6.3:-78857187 MS.gene63434:CDS
GCGACAAGAGCCACAAGAAG+CGG 0.549634 6.3:+78856764 None:intergenic
GCCCTGATTGCAATTTCAGT+AGG 0.550601 6.3:-78858057 MS.gene63434:CDS
GATTGTTATTGGTGCCGGGT+TGG 0.550853 6.3:-78857734 MS.gene63434:CDS
AAGGGATCGACCGGGTGGGA+GGG 0.552307 6.3:-78857650 MS.gene63434:CDS
TGAAACGTTTGTTCGCGTGT+TGG 0.553182 6.3:-78857134 MS.gene63434:CDS
CAGTACCCTGCAACAATGCA+TGG 0.555950 6.3:-78856476 MS.gene63434:CDS
ATAAAGCCGTGAAGTCGATT+CGG 0.556032 6.3:-78857888 MS.gene63434:CDS
TTTCAGAGAGTATTGGAGAC+GGG 0.556898 6.3:-78856532 MS.gene63434:CDS
GAGTTTAGCTCAGTGTTGGA+AGG 0.557445 6.3:+78858378 None:intergenic
GTTTAATAAGTTGTTAGAGA+GGG 0.558201 6.3:-78857407 MS.gene63434:CDS
TGGGGTTGTGGTGATTCCGA+CGG 0.561467 6.3:+78858297 None:intergenic
TGGTGGTGGTGATGGTCTTG+TGG 0.562343 6.3:-78857599 MS.gene63434:CDS
GGGTGCTGGTGTGTACTGAT+GGG 0.562552 6.3:-78857051 MS.gene63434:CDS
GACCGAGGATTTGAGTATGA+GGG 0.565102 6.3:-78856831 MS.gene63434:CDS
TTGCGGAGGATAAAGAAGAG+AGG 0.568786 6.3:-78857291 MS.gene63434:CDS
ATCATTGTTTCATTCCTGGA+GGG 0.570638 6.3:-78857159 MS.gene63434:CDS
AGGTCTCAGCAACTTTATGT+TGG 0.572014 6.3:+78856052 None:intergenic
CAGAGAGTATTGGAGACGGG+AGG 0.575157 6.3:-78856529 MS.gene63434:CDS
GTATTAAGTATGGAAGTGAT+GGG 0.576704 6.3:-78857072 MS.gene63434:CDS
TCGAGTACAGACTGCCTGAA+CGG 0.577795 6.3:+78856631 None:intergenic
TGTCCACTTTATATGCCGGA+TGG 0.577973 6.3:-78857472 MS.gene63434:CDS
TTAGGAATCATATTCTTGCA+CGG 0.578690 6.3:-78857945 MS.gene63434:CDS
TTTGTCTTAACCCTCCCACC+CGG 0.579549 6.3:+78857640 None:intergenic
ACCGAGGATTTGAGTATGAG+GGG 0.581726 6.3:-78856830 MS.gene63434:CDS
TTGTTGCTGTTGTTGTTGGG+AGG 0.586183 6.3:+78858218 None:intergenic
ACAAACGTTTCATTCCCTCC+AGG 0.588278 6.3:+78857145 None:intergenic
GTGGCTGCGGCGGATTTAGG+TGG 0.590399 6.3:-78857580 MS.gene63434:CDS
ACATCCCTAACCTTATGAAG+TGG 0.591540 6.3:+78857496 None:intergenic
TCCCCTCATACTCAAATCCT+CGG 0.593722 6.3:+78856829 None:intergenic
GGTTGTGGTGATTCCGACGG+TGG 0.594206 6.3:+78858300 None:intergenic
GAGGGTGTTCTTTGCTGGAG+AGG 0.596154 6.3:-78856510 MS.gene63434:CDS
GATTCCGACGGTGGTTGTGA+CGG 0.597156 6.3:+78858309 None:intergenic
GGAAGAAATTGAAGCGAATG+TGG 0.600552 6.3:-78858010 MS.gene63434:CDS
TGTTCCTTTAGGGACAGCGT+TGG 0.602218 6.3:-78857338 MS.gene63434:CDS
TGATGGTCTTGTGGCTGCGG+CGG 0.602654 6.3:-78857590 MS.gene63434:CDS
AAATGGTCTTGTCCATGGGA+AGG 0.604796 6.3:-78856012 MS.gene63434:CDS
GCGAATGTGGTGAAAACAAT+CGG 0.607371 6.3:-78857997 MS.gene63434:CDS
GGAGTCTGTCAAAAGGGTGT+TGG 0.607885 6.3:-78856702 MS.gene63434:CDS
CTTTCAGAGAGTATTGGAGA+CGG 0.608296 6.3:-78856533 MS.gene63434:CDS
GAAGGAAGGGATCGACCGGG+TGG 0.609070 6.3:-78857655 MS.gene63434:CDS
ACAAATGTCAGAACCCTCAT+CGG 0.610378 6.3:-78858337 MS.gene63434:CDS
TGATACAACTATCCTTCCCA+TGG 0.613592 6.3:+78856000 None:intergenic
AGAGAGTATTGGAGACGGGA+GGG 0.615836 6.3:-78856528 MS.gene63434:CDS
TGGAAAATGTGTTGATTCTG+AGG 0.616208 6.3:-78857452 MS.gene63434:CDS
TTGTGACGGTGGTTCCGATG+AGG 0.617066 6.3:+78858323 None:intergenic
TTGTTGGGAGGATGAATCGG+AGG 0.619106 6.3:+78858230 None:intergenic
AAGGAAGGGATCGACCGGGT+GGG 0.625021 6.3:-78857654 MS.gene63434:CDS
GATCATTGTTTCATTCCTGG+AGG 0.626617 6.3:-78857160 MS.gene63434:CDS
TAGGCAAGCTATGATTGATG+AGG 0.627755 6.3:-78857374 MS.gene63434:CDS
GGAAAAGATGAATTCACGTA+CGG 0.627915 6.3:-78856605 MS.gene63434:CDS
TACATTTGGTCATTTGACCG+AGG 0.628020 6.3:-78856846 MS.gene63434:CDS
GCTTTGTACTGTGCCTTTAG+GGG 0.628229 6.3:-78857005 MS.gene63434:CDS
TCCGACGGTGGTTGTGACGG+TGG 0.635828 6.3:+78858312 None:intergenic
AGCTATGCTTCTGTGTCCGG+AGG 0.638434 6.3:-78856788 MS.gene63434:CDS
TTGGAAGGAAGGGATCGACC+GGG 0.639174 6.3:-78857658 MS.gene63434:CDS
AATGCATAAAGATAAAGACT+GGG 0.646834 6.3:+78856209 None:intergenic
TGTCTAGCAAGAACACCAAG+TGG 0.648112 6.3:+78857529 None:intergenic
AGGATGTTTAATGGTGATGG+TGG 0.648442 6.3:-78857616 MS.gene63434:CDS
TCTTACACTGAGGAAGATCA+GGG 0.648962 6.3:+78856954 None:intergenic
ACCACCGTCACAACCACCGT+CGG 0.649079 6.3:-78858313 MS.gene63434:CDS
GGTGTTAATGGGAATCCACT+TGG 0.651647 6.3:-78857544 MS.gene63434:CDS
ATGCATGGAGCATTCATGAG+TGG 0.656805 6.3:-78856461 MS.gene63434:CDS
AGCCGTGAAGTCGATTCGGT+CGG 0.660596 6.3:-78857884 MS.gene63434:CDS
ATGCATAAAGATAAAGACTG+GGG 0.664278 6.3:+78856210 None:intergenic
TAGGGTTTATAAGGTTGCGG+AGG 0.666288 6.3:-78857305 MS.gene63434:CDS
CAGGCAGTCTGTACTCGATG+GGG 0.668068 6.3:-78856626 MS.gene63434:CDS
ATGCTCCATGCATTGTTGCA+GGG 0.670835 6.3:+78856471 None:intergenic
TGCATAAAGATAAAGACTGG+GGG 0.678482 6.3:+78856211 None:intergenic
TGATGGGCAGCAGTTTCGTG+CGG 0.691444 6.3:-78857035 MS.gene63434:CDS
GTGGGAGGGTTAAGACAAAG+AGG 0.696240 6.3:-78857636 MS.gene63434:CDS
AATGTGGTGAAAACAATCGG+TGG 0.708462 6.3:-78857994 MS.gene63434:CDS
TATTAAGTATGGAAGTGATG+GGG 0.713202 6.3:-78857071 MS.gene63434:CDS
GGAATCATATTCTTGCACGG+TGG 0.740398 6.3:-78857942 MS.gene63434:CDS
ATTGCATCCTTCTTACACTG+AGG 0.741564 6.3:+78856944 None:intergenic
GATGATCCTTATGAGATGGG+TGG 0.750776 6.3:-78857184 MS.gene63434:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCGAATTACATTATTGTT+AGG - chr6.3:78856413-78856432 MS.gene63434:CDS 20.0%
!!! AAGAAAAATAGTTCTTTTGA+TGG - chr6.3:78856601-78856620 MS.gene63434:CDS 20.0%
!!! ACATTTTAAGAGTTACAAAA+CGG - chr6.3:78857955-78857974 MS.gene63434:CDS 20.0%
!!! TTTAAAGTTTGTATTTTGGA+AGG - chr6.3:78856703-78856722 MS.gene63434:CDS 20.0%
! AATGCATAAAGATAAAGACT+GGG + chr6.3:78858170-78858189 None:intergenic 25.0%
! GAGCATGGTTATATTAATTT+CGG - chr6.3:78856556-78856575 MS.gene63434:CDS 25.0%
! GTTTAATAAGTTGTTAGAGA+GGG - chr6.3:78856969-78856988 MS.gene63434:CDS 25.0%
! TCAATACTTAGGGTTAAAAT+TGG - chr6.3:78858125-78858144 MS.gene63434:CDS 25.0%
! TGTTTAATAAGTTGTTAGAG+AGG - chr6.3:78856968-78856987 MS.gene63434:CDS 25.0%
!! AAAATGTTAAATCGCGATTT+TGG - chr6.3:78858248-78858267 MS.gene63434:CDS 25.0%
!! AAATGTTAAATCGCGATTTT+GGG - chr6.3:78858249-78858268 MS.gene63434:CDS 25.0%
!! TGAATCTAGTTCAATACTTA+GGG - chr6.3:78858115-78858134 MS.gene63434:CDS 25.0%
!! TTGAATCTAGTTCAATACTT+AGG - chr6.3:78858114-78858133 MS.gene63434:CDS 25.0%
!!! AGGGTTTAAAGTTTGTATTT+TGG - chr6.3:78856699-78856718 MS.gene63434:CDS 25.0%
AACTAGATTCAACATCATTC+GGG + chr6.3:78858106-78858125 None:intergenic 30.0%
AAGACAAAGAGGATGTTTAA+TGG - chr6.3:78856751-78856770 MS.gene63434:CDS 30.0%
AGATTGAAGGAGATGAAAAT+CGG - chr6.3:78858222-78858241 MS.gene63434:CDS 30.0%
ATACTTAGGGTTAAAATTGG+AGG - chr6.3:78858128-78858147 MS.gene63434:CDS 30.0%
ATGCATAAAGATAAAGACTG+GGG + chr6.3:78858169-78858188 None:intergenic 30.0%
CAATGCATAAAGATAAAGAC+TGG + chr6.3:78858171-78858190 None:intergenic 30.0%
GAACTAGATTCAACATCATT+CGG + chr6.3:78858107-78858126 None:intergenic 30.0%
GAATTTGTCTATGGCTTATT+GGG - chr6.3:78857164-78857183 MS.gene63434:CDS 30.0%
GTATTAAGTATGGAAGTGAT+GGG - chr6.3:78857304-78857323 MS.gene63434:CDS 30.0%
GTTTCCTGTAGATTCTTTAA+CGG - chr6.3:78856342-78856361 MS.gene63434:CDS 30.0%
TATTAAGTATGGAAGTGATG+GGG - chr6.3:78857305-78857324 MS.gene63434:CDS 30.0%
TCTGACATTTGTGTATCAAT+GGG + chr6.3:78856031-78856050 None:intergenic 30.0%
TCTTATGTCGAATTTGTCTA+TGG - chr6.3:78857155-78857174 MS.gene63434:CDS 30.0%
TCTTATTCTTATGTTGCTGT+TGG - chr6.3:78857795-78857814 MS.gene63434:CDS 30.0%
TGTATTAAGTATGGAAGTGA+TGG - chr6.3:78857303-78857322 MS.gene63434:CDS 30.0%
TTAGGAATCATATTCTTGCA+CGG - chr6.3:78856431-78856450 MS.gene63434:CDS 30.0%
TTCTGACATTTGTGTATCAA+TGG + chr6.3:78856032-78856051 None:intergenic 30.0%
! AAGGATATTTTTCATCCGAA+GGG - chr6.3:78857705-78857724 MS.gene63434:CDS 30.0%
! AATGTTAAATCGCGATTTTG+GGG - chr6.3:78858250-78858269 MS.gene63434:CDS 30.0%
! ATTAGATTTGCCACTTCATA+AGG - chr6.3:78856870-78856889 MS.gene63434:CDS 30.0%
! GATATACTTTCAGAGAGTAT+TGG - chr6.3:78857837-78857856 MS.gene63434:CDS 30.0%
! TTTTTCTTCGCTTTAATCTC+CGG + chr6.3:78856589-78856608 None:intergenic 30.0%
!! AAGTTTGTATTTTGGAAGGA+AGG - chr6.3:78856707-78856726 MS.gene63434:CDS 30.0%
!! AGTTTGTATTTTGGAAGGAA+GGG - chr6.3:78856708-78856727 MS.gene63434:CDS 30.0%
!! TATAGGTTTTTGATTGAGCA+TGG - chr6.3:78856541-78856560 MS.gene63434:CDS 30.0%
!! TATTAATTTCGGTGTTTCAC+CGG - chr6.3:78856567-78856586 MS.gene63434:CDS 30.0%
AAGAGAGGATGTTGTTGAAT+TGG - chr6.3:78857100-78857119 MS.gene63434:CDS 35.0%
AAGAGGATGTTTAATGGTGA+TGG - chr6.3:78856757-78856776 MS.gene63434:CDS 35.0%
AAGGATGCAATTCATAGGTT+AGG - chr6.3:78857444-78857463 MS.gene63434:CDS 35.0%
ACTGTGGAGTGTATTAAGTA+TGG - chr6.3:78857294-78857313 MS.gene63434:CDS 35.0%
ATCATTGTTTCATTCCTGGA+GGG - chr6.3:78857217-78857236 MS.gene63434:CDS 35.0%
CAATTCATAGGTTAGGATTC+GGG - chr6.3:78857451-78857470 MS.gene63434:CDS 35.0%
CACAACAAAAAACATCGATG+AGG - chr6.3:78858004-78858023 MS.gene63434:CDS 35.0%
CAGCTTAATGAAGCAGAAAA+TGG - chr6.3:78858347-78858366 MS.gene63434:CDS 35.0%
CGAATTTGTCTATGGCTTAT+TGG - chr6.3:78857163-78857182 MS.gene63434:CDS 35.0%
GAATTGGCATCTTGCTAATT+TGG - chr6.3:78857116-78857135 MS.gene63434:CDS 35.0%
GCAATTCATAGGTTAGGATT+CGG - chr6.3:78857450-78857469 MS.gene63434:CDS 35.0%
GGAAAAGATGAATTCACGTA+CGG - chr6.3:78857771-78857790 MS.gene63434:CDS 35.0%
GTAAGAAGGATGCAATTCAT+AGG - chr6.3:78857439-78857458 MS.gene63434:CDS 35.0%
TAAAAACACTAATTGTCGCG+CGG + chr6.3:78856680-78856699 None:intergenic 35.0%
TCTTTCTTAAGAACCCCTAA+AGG + chr6.3:78857387-78857406 None:intergenic 35.0%
TGCATAAAGATAAAGACTGG+GGG + chr6.3:78858168-78858187 None:intergenic 35.0%
TGTTTGTCCACTTTATATGC+CGG - chr6.3:78856900-78856919 MS.gene63434:CDS 35.0%
! AGGATATTTTTCATCCGAAG+GGG - chr6.3:78857706-78857725 MS.gene63434:CDS 35.0%
! AGTGTTCTTACTGGTGTTAA+TGG - chr6.3:78856820-78856839 MS.gene63434:CDS 35.0%
! ATTTGCCACTTCATAAGGTT+AGG - chr6.3:78856875-78856894 MS.gene63434:CDS 35.0%
! CTGTTTCCGACTAATTTTTG+GGG - chr6.3:78857495-78857514 MS.gene63434:CDS 35.0%
! CTTTTGATGGAATTGAGAGA+GGG - chr6.3:78856614-78856633 MS.gene63434:CDS 35.0%
! GAAGGATATTTTTCATCCGA+AGG - chr6.3:78857704-78857723 MS.gene63434:CDS 35.0%
! GAATCAACACATTTTCCATC+CGG + chr6.3:78856922-78856941 None:intergenic 35.0%
! GTGTTCTTACTGGTGTTAAT+GGG - chr6.3:78856821-78856840 MS.gene63434:CDS 35.0%
! GTTTGGTTGATGTTGCTTAT+AGG - chr6.3:78856524-78856543 MS.gene63434:CDS 35.0%
! TCTTTTGATGGAATTGAGAG+AGG - chr6.3:78856613-78856632 MS.gene63434:CDS 35.0%
! TTGTTGTTGCTGTTGTTGTT+GGG + chr6.3:78856164-78856183 None:intergenic 35.0%
! TTTGCCACTTCATAAGGTTA+GGG - chr6.3:78856876-78856895 MS.gene63434:CDS 35.0%
! TTTTCTGCTTCATTAAGCTG+AGG + chr6.3:78858347-78858366 None:intergenic 35.0%
!! AAGAGTGTTGATGTTCCTTT+AGG - chr6.3:78857027-78857046 MS.gene63434:CDS 35.0%
!! AGAGTGTTGATGTTCCTTTA+GGG - chr6.3:78857028-78857047 MS.gene63434:CDS 35.0%
!! ATTGAGTTGAGTCAGATTGA+AGG - chr6.3:78858209-78858228 MS.gene63434:CDS 35.0%
!! CGCGACAATTAGTGTTTTTA+GGG - chr6.3:78856680-78856699 MS.gene63434:CDS 35.0%
!! GCTGTTTCCGACTAATTTTT+GGG - chr6.3:78857494-78857513 MS.gene63434:CDS 35.0%
!! TGATTCTGAGGTTGATTCTA+GGG - chr6.3:78856936-78856955 MS.gene63434:CDS 35.0%
!! TGGAAAATGTGTTGATTCTG+AGG - chr6.3:78856924-78856943 MS.gene63434:CDS 35.0%
!! TTGATTCTGAGGTTGATTCT+AGG - chr6.3:78856935-78856954 MS.gene63434:CDS 35.0%
!!! AATTTTGAGGTGGGTTTTCA+GGG + chr6.3:78856126-78856145 None:intergenic 35.0%
!!! TGCTGTTTCCGACTAATTTT+TGG - chr6.3:78857493-78857512 MS.gene63434:CDS 35.0%
AAGATAAAGACTGGGGGAAT+TGG + chr6.3:78858162-78858181 None:intergenic 40.0%
AATGTGGTGAAAACAATCGG+TGG - chr6.3:78856382-78856401 MS.gene63434:CDS 40.0%
ACAAATGTCAGAACCCTCAT+CGG - chr6.3:78856039-78856058 MS.gene63434:CDS 40.0%
ACAGTCCTCCCATAGAAAAT+CGG + chr6.3:78857279-78857298 None:intergenic 40.0%
ACATCCCTAACCTTATGAAG+TGG + chr6.3:78856883-78856902 None:intergenic 40.0%
ACCCTACTGAAATTGCAATC+AGG + chr6.3:78856324-78856343 None:intergenic 40.0%
AGGTCTCAGCAACTTTATGT+TGG + chr6.3:78858327-78858346 None:intergenic 40.0%
ATAAAGCCGTGAAGTCGATT+CGG - chr6.3:78856488-78856507 MS.gene63434:CDS 40.0%
ATTGCATCCTTCTTACACTG+AGG + chr6.3:78857435-78857454 None:intergenic 40.0%
CAGGATGATCCTTATGAGAT+GGG - chr6.3:78857189-78857208 MS.gene63434:CDS 40.0%
CCCTACTGAAATTGCAATCA+GGG + chr6.3:78856323-78856342 None:intergenic 40.0%
CCCTGATTGCAATTTCAGTA+GGG - chr6.3:78856320-78856339 MS.gene63434:CDS 40.0%
GATCATTGTTTCATTCCTGG+AGG - chr6.3:78857216-78857235 MS.gene63434:CDS 40.0%
GCGAATGTGGTGAAAACAAT+CGG - chr6.3:78856379-78856398 MS.gene63434:CDS 40.0%
GGAAGAAATTGAAGCGAATG+TGG - chr6.3:78856366-78856385 MS.gene63434:CDS 40.0%
GGTGATCATTGTTTCATTCC+TGG - chr6.3:78857213-78857232 MS.gene63434:CDS 40.0%
GGTGGGAATATCGATACATT+TGG - chr6.3:78857516-78857535 MS.gene63434:CDS 40.0%
GTCAGTTTAGTCGGGAAAAA+GGG - chr6.3:78858272-78858291 MS.gene63434:CDS 40.0%
GTGAAACCTGACCTGAATTT+CGG - chr6.3:78858053-78858072 MS.gene63434:CDS 40.0%
TACATTTGGTCATTTGACCG+AGG - chr6.3:78857530-78857549 MS.gene63434:CDS 40.0%
TAGAGAGGGTTTGTAAGCTT+AGG - chr6.3:78856983-78857002 MS.gene63434:CDS 40.0%
TAGGCAAGCTATGATTGATG+AGG - chr6.3:78857002-78857021 MS.gene63434:CDS 40.0%
TATAGCTATGCTTCTGTGTC+CGG - chr6.3:78857585-78857604 MS.gene63434:CDS 40.0%
TCAGGATGATCCTTATGAGA+TGG - chr6.3:78857188-78857207 MS.gene63434:CDS 40.0%
TCCTCCGTTAAAGAATCTAC+AGG + chr6.3:78856349-78856368 None:intergenic 40.0%
TCCTGTAGATTCTTTAACGG+AGG - chr6.3:78856345-78856364 MS.gene63434:CDS 40.0%
TCGTAGGGTTTATAAGGTTG+CGG - chr6.3:78857068-78857087 MS.gene63434:CDS 40.0%
TCTTACACTGAGGAAGATCA+GGG + chr6.3:78857425-78857444 None:intergenic 40.0%
TGAAACCTGACCTGAATTTC+GGG - chr6.3:78858054-78858073 MS.gene63434:CDS 40.0%
TGATACAACTATCCTTCCCA+TGG + chr6.3:78858379-78858398 None:intergenic 40.0%
TGATCTTCCTCAGTGTAAGA+AGG - chr6.3:78857425-78857444 MS.gene63434:CDS 40.0%
TGGGAAGGATAGTTGTATCA+TGG - chr6.3:78858379-78858398 MS.gene63434:CDS 40.0%
TTCCCACCCCAAAAATTAGT+CGG + chr6.3:78857504-78857523 None:intergenic 40.0%
TTCTTACACTGAGGAAGATC+AGG + chr6.3:78857426-78857445 None:intergenic 40.0%
TTTCCATCCGGCATATAAAG+TGG + chr6.3:78856910-78856929 None:intergenic 40.0%
TTTGGAAAGGGATGTTGTTG+CGG + chr6.3:78856260-78856279 None:intergenic 40.0%
! AGAGGGAGTGTGATTGTTAT+TGG - chr6.3:78856631-78856650 MS.gene63434:CDS 40.0%
! AGGGTCTTCCGATTTTCTAT+GGG - chr6.3:78857268-78857287 MS.gene63434:CDS 40.0%
! AGTGTGATTGTTATTGGTGC+CGG - chr6.3:78856637-78856656 MS.gene63434:CDS 40.0%
! GATGAATCGGAGGAATTTTG+AGG + chr6.3:78856139-78856158 None:intergenic 40.0%
! GATTCAACATCATTCGGGTT+TGG + chr6.3:78858101-78858120 None:intergenic 40.0%
! GCGCGACAATTAGTGTTTTT+AGG - chr6.3:78856679-78856698 MS.gene63434:CDS 40.0%
! TATGTTGCTGTTGGATCTTC+AGG - chr6.3:78857804-78857823 MS.gene63434:CDS 40.0%
! TTAGGTGGTAGTGTTCTTAC+TGG - chr6.3:78856811-78856830 MS.gene63434:CDS 40.0%
! TTCTGAGTTTAGCTCAGTGT+TGG + chr6.3:78856005-78856024 None:intergenic 40.0%
! TTGTTGTTGGGAGGATGAAT+CGG + chr6.3:78856152-78856171 None:intergenic 40.0%
!! AGGATGTTTAATGGTGATGG+TGG - chr6.3:78856760-78856779 MS.gene63434:CDS 40.0%
!! ATGTTTAATGGTGATGGTGG+TGG - chr6.3:78856763-78856782 MS.gene63434:CDS 40.0%
!! CAGAAAATGGTCTTGTCCAT+GGG - chr6.3:78858360-78858379 MS.gene63434:CDS 40.0%
!! CTTGTTGTTGCTGTTGTTGT+TGG + chr6.3:78856165-78856184 None:intergenic 40.0%
!! CTTTCAGAGAGTATTGGAGA+CGG - chr6.3:78857843-78857862 MS.gene63434:CDS 40.0%
!! GTTTTCAGGGGAGATTGTTA+CGG + chr6.3:78856113-78856132 None:intergenic 40.0%
!! TTTCAGAGAGTATTGGAGAC+GGG - chr6.3:78857844-78857863 MS.gene63434:CDS 40.0%
!! TTTCCGACTAATTTTTGGGG+TGG - chr6.3:78857498-78857517 MS.gene63434:CDS 40.0%
!!! AAGGGTGTTGGATGTTTTGA+AGG - chr6.3:78857686-78857705 MS.gene63434:CDS 40.0%
!!! AATCGGAGGAATTTTGAGGT+GGG + chr6.3:78856135-78856154 None:intergenic 40.0%
!!! AGATTGTTACGGTGTCGTTT+TGG + chr6.3:78856102-78856121 None:intergenic 40.0%
!!! ATTGTTACGGTGTCGTTTTG+GGG + chr6.3:78856100-78856119 None:intergenic 40.0%
!!! ATTTTGAGGTGGGTTTTCAG+GGG + chr6.3:78856125-78856144 None:intergenic 40.0%
!!! ATTTTGGGGTCAGTTTAGTC+GGG - chr6.3:78858264-78858283 MS.gene63434:CDS 40.0%
!!! GAATTTTGAGGTGGGTTTTC+AGG + chr6.3:78856127-78856146 None:intergenic 40.0%
!!! GATTGTTACGGTGTCGTTTT+GGG + chr6.3:78856101-78856120 None:intergenic 40.0%
!!! GATTTTGGGGTCAGTTTAGT+CGG - chr6.3:78858263-78858282 MS.gene63434:CDS 40.0%
!!! GTTTTTGCGGGTTTTGGAAA+GGG + chr6.3:78856272-78856291 None:intergenic 40.0%
!!! TTCCGACTAATTTTTGGGGT+GGG - chr6.3:78857499-78857518 MS.gene63434:CDS 40.0%
AAACCTAAGAGCAGCTTCTC+CGG + chr6.3:78857637-78857656 None:intergenic 45.0%
AATGCTCCATGCATTGTTGC+AGG + chr6.3:78857909-78857928 None:intergenic 45.0%
ACAAACGTTTCATTCCCTCC+AGG + chr6.3:78857234-78857253 None:intergenic 45.0%
ACCGAGGATTTGAGTATGAG+GGG - chr6.3:78857546-78857565 MS.gene63434:CDS 45.0%
ATGCTCCATGCATTGTTGCA+GGG + chr6.3:78857908-78857927 None:intergenic 45.0%
CGCTTTGTACTGTGCCTTTA+GGG - chr6.3:78857370-78857389 MS.gene63434:CDS 45.0%
GACCGAGGATTTGAGTATGA+GGG - chr6.3:78857545-78857564 MS.gene63434:CDS 45.0%
GATGATCCTTATGAGATGGG+TGG - chr6.3:78857192-78857211 MS.gene63434:CDS 45.0%
GCCCTGATTGCAATTTCAGT+AGG - chr6.3:78856319-78856338 MS.gene63434:CDS 45.0%
GCTTTGTACTGTGCCTTTAG+GGG - chr6.3:78857371-78857390 MS.gene63434:CDS 45.0%
GGAATCATATTCTTGCACGG+TGG - chr6.3:78856434-78856453 MS.gene63434:CDS 45.0%
GGAGATCGGATGTGAATGTT+TGG - chr6.3:78856455-78856474 MS.gene63434:CDS 45.0%
GGCGTTTCGTAGGGTTTATA+AGG - chr6.3:78857062-78857081 MS.gene63434:CDS 45.0%
GGTCAGTTTAGTCGGGAAAA+AGG - chr6.3:78858271-78858290 MS.gene63434:CDS 45.0%
GGTGAAAACAATCGGTGGTT+CGG - chr6.3:78856387-78856406 MS.gene63434:CDS 45.0%
GGTGTTAATGGGAATCCACT+TGG - chr6.3:78856832-78856851 MS.gene63434:CDS 45.0%
GTCTATGGCTTATTGGGATC+AGG - chr6.3:78857170-78857189 MS.gene63434:CDS 45.0%
TAGGGTTTATAAGGTTGCGG+AGG - chr6.3:78857071-78857090 MS.gene63434:CDS 45.0%
TATTCTTGCACGGTGGAGAT+CGG - chr6.3:78856441-78856460 MS.gene63434:CDS 45.0%
TCCCCTCATACTCAAATCCT+CGG + chr6.3:78857550-78857569 None:intergenic 45.0%
TGAAACGTTTGTTCGCGTGT+TGG - chr6.3:78857242-78857261 MS.gene63434:CDS 45.0%
TGACCGAGGATTTGAGTATG+AGG - chr6.3:78857544-78857563 MS.gene63434:CDS 45.0%
TGATCACCACCCATCTCATA+AGG + chr6.3:78857201-78857220 None:intergenic 45.0%
TGCATTGCTTTCGAAGAAGC+AGG - chr6.3:78858184-78858203 MS.gene63434:CDS 45.0%
TGTCCACTTTATATGCCGGA+TGG - chr6.3:78856904-78856923 MS.gene63434:CDS 45.0%
TGTCTAGCAAGAACACCAAG+TGG + chr6.3:78856850-78856869 None:intergenic 45.0%
TTGCGGAGGATAAAGAAGAG+AGG - chr6.3:78857085-78857104 MS.gene63434:CDS 45.0%
! ACCCTTTTGACAGACTCCAA+CGG + chr6.3:78857672-78857691 None:intergenic 45.0%
! ATGCATGGAGCATTCATGAG+TGG - chr6.3:78857915-78857934 MS.gene63434:CDS 45.0%
! GAGGGTCTTCCGATTTTCTA+TGG - chr6.3:78857267-78857286 MS.gene63434:CDS 45.0%
! GAGTTTAGCTCAGTGTTGGA+AGG + chr6.3:78856001-78856020 None:intergenic 45.0%
! GATTTTCTATGGGAGGACTG+TGG - chr6.3:78857278-78857297 MS.gene63434:CDS 45.0%
! GTCTTCCGATTTTCTATGGG+AGG - chr6.3:78857271-78857290 MS.gene63434:CDS 45.0%
! GTGTGATTGTTATTGGTGCC+GGG - chr6.3:78856638-78856657 MS.gene63434:CDS 45.0%
! TTGTTGCTGTTGTTGTTGGG+AGG + chr6.3:78856161-78856180 None:intergenic 45.0%
!! AAATGGTCTTGTCCATGGGA+AGG - chr6.3:78858364-78858383 MS.gene63434:CDS 45.0%
!! AGGATTCGGGTTGCTGAATA+AGG - chr6.3:78857464-78857483 MS.gene63434:CDS 45.0%
!! GAATCGGAGGAATTTTGAGG+TGG + chr6.3:78856136-78856155 None:intergenic 45.0%
!! GCAGAAAATGGTCTTGTCCA+TGG - chr6.3:78858359-78858378 MS.gene63434:CDS 45.0%
!! TCGATTCGGTCGGAACATAA+GGG - chr6.3:78856502-78856521 MS.gene63434:CDS 45.0%
!! TGAGGTTGATTCTAGGGTTG+AGG - chr6.3:78856942-78856961 MS.gene63434:CDS 45.0%
!!! CGTTTTTGCGGGTTTTGGAA+AGG + chr6.3:78856273-78856292 None:intergenic 45.0%
!!! CTTTAGCGACGTCGTTTTTG+CGG + chr6.3:78856285-78856304 None:intergenic 45.0%
!!! TTTAGCGACGTCGTTTTTGC+GGG + chr6.3:78856284-78856303 None:intergenic 45.0%
AAGCTCCCGAAATTCAGGTC+AGG + chr6.3:78858062-78858081 None:intergenic 50.0%
CAGAGAAGCTCCCGAAATTC+AGG + chr6.3:78858067-78858086 None:intergenic 50.0%
CAGTACCCTGCAACAATGCA+TGG - chr6.3:78857900-78857919 MS.gene63434:CDS 50.0%
GCCGTTGGAGTCTGTCAAAA+GGG - chr6.3:78857668-78857687 MS.gene63434:CDS 50.0%
GCGCTTTGTACTGTGCCTTT+AGG - chr6.3:78857369-78857388 MS.gene63434:CDS 50.0%
GTGGGAGGGTTAAGACAAAG+AGG - chr6.3:78856740-78856759 MS.gene63434:CDS 50.0%
TCAGGCAGTCTGTACTCGAT+GGG - chr6.3:78857749-78857768 MS.gene63434:CDS 50.0%
TCCGGAACAACAATCCCCTT+CGG + chr6.3:78857723-78857742 None:intergenic 50.0%
TCGAGTACAGACTGCCTGAA+CGG + chr6.3:78857748-78857767 None:intergenic 50.0%
TCGGTCGGAACATAAGGGTT+TGG - chr6.3:78856507-78856526 MS.gene63434:CDS 50.0%
TTCAGGCAGTCTGTACTCGA+TGG - chr6.3:78857748-78857767 MS.gene63434:CDS 50.0%
TTCGTGGTAGGGTAGGGTTA+GGG + chr6.3:78856201-78856220 None:intergenic 50.0%
TTGTTGGGAGGATGAATCGG+AGG + chr6.3:78856149-78856168 None:intergenic 50.0%
TTTCGTGGTAGGGTAGGGTT+AGG + chr6.3:78856202-78856221 None:intergenic 50.0%
TTTGGAAGGAAGGGATCGAC+CGG - chr6.3:78856717-78856736 MS.gene63434:CDS 50.0%
TTTGTCTTAACCCTCCCACC+CGG + chr6.3:78856739-78856758 None:intergenic 50.0%
! GGAGTCTGTCAAAAGGGTGT+TGG - chr6.3:78857674-78857693 MS.gene63434:CDS 50.0%
! GTTTGAGATGATGTCGCCGT+TGG - chr6.3:78857653-78857672 MS.gene63434:CDS 50.0%
! TCCGAAGGGGATTGTTGTTC+CGG - chr6.3:78857719-78857738 MS.gene63434:CDS 50.0%
! TGTTCCTTTAGGGACAGCGT+TGG - chr6.3:78857038-78857057 MS.gene63434:CDS 50.0%
! TTCCGACCGAATCGACTTCA+CGG + chr6.3:78856497-78856516 None:intergenic 50.0%
!! AATGGTGATGGTGGTGGTGA+TGG - chr6.3:78856769-78856788 MS.gene63434:CDS 50.0%
!! ACGACGTCGTTTTCGTGGTA+GGG + chr6.3:78856212-78856231 None:intergenic 50.0%
!! AGAGAGTATTGGAGACGGGA+GGG - chr6.3:78857848-78857867 MS.gene63434:CDS 50.0%
!! GATTGTTATTGGTGCCGGGT+TGG - chr6.3:78856642-78856661 MS.gene63434:CDS 50.0%
!! GTCGATTCGGTCGGAACATA+AGG - chr6.3:78856501-78856520 MS.gene63434:CDS 50.0%
!! GTCGTTTTCGTGGTAGGGTA+GGG + chr6.3:78856207-78856226 None:intergenic 50.0%
!! TTTGTTCGCGTGTTGGCTGA+GGG - chr6.3:78857249-78857268 MS.gene63434:CDS 50.0%
!!! GACGTCGTTTTTGCGGGTTT+TGG + chr6.3:78856278-78856297 None:intergenic 50.0%
AGCTATGCTTCTGTGTCCGG+AGG - chr6.3:78857588-78857607 MS.gene63434:CDS 55.0%
CAGGCAGTCTGTACTCGATG+GGG - chr6.3:78857750-78857769 MS.gene63434:CDS 55.0%
CGACAAGAGCCACAAGAAGC+GGG + chr6.3:78857614-78857633 None:intergenic 55.0%
CGAGTACAGACTGCCTGAAC+GGG + chr6.3:78857747-78857766 None:intergenic 55.0%
CGCCGTTGGAGTCTGTCAAA+AGG - chr6.3:78857667-78857686 MS.gene63434:CDS 55.0%
CTTCTTGTGGCTCTTGTCGC+CGG - chr6.3:78857615-78857634 MS.gene63434:CDS 55.0%
GATTCCGACGGTGGTTGTGA+CGG + chr6.3:78856070-78856089 None:intergenic 55.0%
GCGACAAGAGCCACAAGAAG+CGG + chr6.3:78857615-78857634 None:intergenic 55.0%
GGTAGGGTAGGGTTAGGGTT+TGG + chr6.3:78856196-78856215 None:intergenic 55.0%
TGGGGTTGTGGTGATTCCGA+CGG + chr6.3:78856082-78856101 None:intergenic 55.0%
TGTGACGGTGGTTCCGATGA+GGG + chr6.3:78856055-78856074 None:intergenic 55.0%
TTGGAAGGAAGGGATCGACC+GGG - chr6.3:78856718-78856737 MS.gene63434:CDS 55.0%
TTGTGACGGTGGTTCCGATG+AGG + chr6.3:78856056-78856075 None:intergenic 55.0%
! GTATGGAAGTGATGGGGTGC+TGG - chr6.3:78857311-78857330 MS.gene63434:CDS 55.0%
! TCCTTTAGGGACAGCGTTGG+AGG - chr6.3:78857041-78857060 MS.gene63434:CDS 55.0%
! TGATGGGCAGCAGTTTCGTG+CGG - chr6.3:78857341-78857360 MS.gene63434:CDS 55.0%
!! AGCCGTGAAGTCGATTCGGT+CGG - chr6.3:78856492-78856511 MS.gene63434:CDS 55.0%
!! AGCGTTGGAGGCGTTTCGTA+GGG - chr6.3:78857053-78857072 MS.gene63434:CDS 55.0%
!! CAGAGAGTATTGGAGACGGG+AGG - chr6.3:78857847-78857866 MS.gene63434:CDS 55.0%
!! CGTCGTTTTCGTGGTAGGGT+AGG + chr6.3:78856208-78856227 None:intergenic 55.0%
!! GACGACGTCGTTTTCGTGGT+AGG + chr6.3:78856213-78856232 None:intergenic 55.0%
!! GAGGGTGTTCTTTGCTGGAG+AGG - chr6.3:78857866-78857885 MS.gene63434:CDS 55.0%
!! GGGTGCTGGTGTGTACTGAT+GGG - chr6.3:78857325-78857344 MS.gene63434:CDS 55.0%
!! GTTTGTTCGCGTGTTGGCTG+AGG - chr6.3:78857248-78857267 MS.gene63434:CDS 55.0%
!! TGGTGATGGTCTTGTGGCTG+CGG - chr6.3:78856783-78856802 MS.gene63434:CDS 55.0%
!! TGGTGGTGGTGATGGTCTTG+TGG - chr6.3:78856777-78856796 MS.gene63434:CDS 55.0%
!! TGTTATTGGTGCCGGGTTGG+CGG - chr6.3:78856645-78856664 MS.gene63434:CDS 55.0%
!! TTGCGACGACGTCGTTTTCG+TGG + chr6.3:78856217-78856236 None:intergenic 55.0%
!!! ACGGTGTCGTTTTGGGGTTG+TGG + chr6.3:78856094-78856113 None:intergenic 55.0%
AAGGAAGGGATCGACCGGGT+GGG - chr6.3:78856722-78856741 MS.gene63434:CDS 60.0%
ACCACCGTCACAACCACCGT+CGG - chr6.3:78856063-78856082 MS.gene63434:CDS 60.0%
GCAGCAGTTTCGTGCGGACA+TGG - chr6.3:78857347-78857366 MS.gene63434:CDS 60.0%
GCCTCCAACGCTGTCCCTAA+AGG + chr6.3:78857045-78857064 None:intergenic 60.0%
GGTTGTGGTGATTCCGACGG+TGG + chr6.3:78856079-78856098 None:intergenic 60.0%
TCGCCGGAGAAGCTGCTCTT+AGG - chr6.3:78857631-78857650 MS.gene63434:CDS 60.0%
TGTTGTTCCGGAGCCCGTTC+AGG - chr6.3:78857731-78857750 MS.gene63434:CDS 60.0%
! CTTGTGGCTGCGGCGGATTT+AGG - chr6.3:78856793-78856812 MS.gene63434:CDS 60.0%
!! CAGCGTTGGAGGCGTTTCGT+AGG - chr6.3:78857052-78857071 MS.gene63434:CDS 60.0%
!! GACGGGAGGGTGTTCTTTGC+TGG - chr6.3:78857861-78857880 MS.gene63434:CDS 60.0%
!! GGGGTGCTGGTGTGTACTGA+TGG - chr6.3:78857324-78857343 MS.gene63434:CDS 60.0%
!! GTTATTGGTGCCGGGTTGGC+GGG - chr6.3:78856646-78856665 MS.gene63434:CDS 60.0%
!! TGATGGTCTTGTGGCTGCGG+CGG - chr6.3:78856786-78856805 MS.gene63434:CDS 60.0%
AAGGGATCGACCGGGTGGGA+GGG - chr6.3:78856726-78856745 MS.gene63434:CDS 65.0%
AGCCACAAGAAGCGGGCCTC+CGG + chr6.3:78857607-78857626 None:intergenic 65.0%
GAAGGAAGGGATCGACCGGG+TGG - chr6.3:78856721-78856740 MS.gene63434:CDS 65.0%
GGCAACCAAACCCGCCAACC+CGG + chr6.3:78856659-78856678 None:intergenic 65.0%
TCCGACGGTGGTTGTGACGG+TGG + chr6.3:78856067-78856086 None:intergenic 65.0%
! CAGACTGCCTGAACGGGCTC+CGG + chr6.3:78857741-78857760 None:intergenic 65.0%
! GTGGCTGCGGCGGATTTAGG+TGG - chr6.3:78856796-78856815 MS.gene63434:CDS 65.0%
GAAGGGATCGACCGGGTGGG+AGG - chr6.3:78856725-78856744 MS.gene63434:CDS 70.0%
GTCCGGAGGCCCGCTTCTTG+TGG - chr6.3:78857602-78857621 MS.gene63434:CDS 70.0%
!! TGGTGCCGGGTTGGCGGGTT+TGG - chr6.3:78856651-78856670 MS.gene63434:CDS 70.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 78855989 78858409 78855989 ID=MS.gene63434
chr6.3 mRNA 78855989 78858409 78855989 ID=MS.gene63434.t1;Parent=MS.gene63434
chr6.3 exon 78855989 78858409 78855989 ID=MS.gene63434.t1.exon1;Parent=MS.gene63434.t1
chr6.3 CDS 78855989 78858409 78855989 ID=cds.MS.gene63434.t1;Parent=MS.gene63434.t1
Gene Sequence

>MS.gene63434

ATGCACTCACCTTCCAACACTGAGCTAAACTCAGAACAACCCATTGATACACAAATGTCAGAACCCTCATCGGAACCACCGTCACAACCACCGTCGGAATCACCACAACCCCAAAACGACACCGTAACAATCTCCCCTGAAAACCCACCTCAAAATTCCTCCGATTCATCCTCCCAACAACAACAGCAACAACAAGAACAAGATCCAAACCCTAACCCTACCCTACCACGAAAACGACGTCGTCGCAAGAAATTCTTCACAGAATTAACCGCAACAACATCCCTTTCCAAAACCCGCAAAAACGACGTCGCTAAAGACTGTGATGACGAAGCCCTGATTGCAATTTCAGTAGGGTTTCCTGTAGATTCTTTAACGGAGGAAGAAATTGAAGCGAATGTGGTGAAAACAATCGGTGGTTCGGAGCAATCGAATTACATTATTGTTAGGAATCATATTCTTGCACGGTGGAGATCGGATGTGAATGTTTGGTTGACTTATGATAAAGCCGTGAAGTCGATTCGGTCGGAACATAAGGGTTTGGTTGATGTTGCTTATAGGTTTTTGATTGAGCATGGTTATATTAATTTCGGTGTTTCACCGGAGATTAAAGCGAAGAAAAATAGTTCTTTTGATGGAATTGAGAGAGGGAGTGTGATTGTTATTGGTGCCGGGTTGGCGGGTTTGGTTGCCGCGCGACAATTAGTGTTTTTAGGGTTTAAAGTTTGTATTTTGGAAGGAAGGGATCGACCGGGTGGGAGGGTTAAGACAAAGAGGATGTTTAATGGTGATGGTGGTGGTGATGGTCTTGTGGCTGCGGCGGATTTAGGTGGTAGTGTTCTTACTGGTGTTAATGGGAATCCACTTGGTGTTCTTGCTAGACAATTAGATTTGCCACTTCATAAGGTTAGGGATGTTTGTCCACTTTATATGCCGGATGGAAAATGTGTTGATTCTGAGGTTGATTCTAGGGTTGAGGTTTTGTTTAATAAGTTGTTAGAGAGGGTTTGTAAGCTTAGGCAAGCTATGATTGATGAGGTTAAGAGTGTTGATGTTCCTTTAGGGACAGCGTTGGAGGCGTTTCGTAGGGTTTATAAGGTTGCGGAGGATAAAGAAGAGAGGATGTTGTTGAATTGGCATCTTGCTAATTTGGAGTATGCAAATGCTACTCTTATGTCGAATTTGTCTATGGCTTATTGGGATCAGGATGATCCTTATGAGATGGGTGGTGATCATTGTTTCATTCCTGGAGGGAATGAAACGTTTGTTCGCGTGTTGGCTGAGGGTCTTCCGATTTTCTATGGGAGGACTGTGGAGTGTATTAAGTATGGAAGTGATGGGGTGCTGGTGTGTACTGATGGGCAGCAGTTTCGTGCGGACATGGCGCTTTGTACTGTGCCTTTAGGGGTTCTTAAGAAAGAATCGATTAAGTTTGTCCCTGATCTTCCTCAGTGTAAGAAGGATGCAATTCATAGGTTAGGATTCGGGTTGCTGAATAAGGTTGTGATGCTGTTTCCGACTAATTTTTGGGGTGGGAATATCGATACATTTGGTCATTTGACCGAGGATTTGAGTATGAGGGGAGAGTTTTTTCTGTTCTATAGCTATGCTTCTGTGTCCGGAGGCCCGCTTCTTGTGGCTCTTGTCGCCGGAGAAGCTGCTCTTAGGTTTGAGATGATGTCGCCGTTGGAGTCTGTCAAAAGGGTGTTGGATGTTTTGAAGGATATTTTTCATCCGAAGGGGATTGTTGTTCCGGAGCCCGTTCAGGCAGTCTGTACTCGATGGGGAAAAGATGAATTCACGTACGGATCTTATTCTTATGTTGCTGTTGGATCTTCAGGAGATGATTACGATATACTTTCAGAGAGTATTGGAGACGGGAGGGTGTTCTTTGCTGGAGAGGCAACTAGCAAACAGTACCCTGCAACAATGCATGGAGCATTCATGAGTGGAATGAGAGAAGCTGCAAACATTTTAAGAGTTACAAAACGGAAGTCTCAAAGTTCAATTTCATCTAACACAACAAAAAACATCGATGAGGAGACTGACGATTTAGACAAACTATTTGTGAAACCTGACCTGAATTTCGGGAGCTTCTCTGCTTTGTTTAATCCAAACCCGAATGATGTTGAATCTAGTTCAATACTTAGGGTTAAAATTGGAGGAGCTGTATCCAATTCCCCCAGTCTTTATCTTTATGCATTGCTTTCGAAGAAGCAGGTCATTGAGTTGAGTCAGATTGAAGGAGATGAAAATCGGATGAAAATGTTAAATCGCGATTTTGGGGTCAGTTTAGTCGGGAAAAAGGGTTTAAGTAGCACTGCTGAATCTCTTATTGCCAACATAAAGTTGCTGAGACCTCAGCTTAATGAAGCAGAAAATGGTCTTGTCCATGGGAAGGATAGTTGTATCATGGAAGAATAG

Protein sequence

>MS.gene63434.t1

MHSPSNTELNSEQPIDTQMSEPSSEPPSQPPSESPQPQNDTVTISPENPPQNSSDSSSQQQQQQQEQDPNPNPTLPRKRRRRKKFFTELTATTSLSKTRKNDVAKDCDDEALIAISVGFPVDSLTEEEIEANVVKTIGGSEQSNYIIVRNHILARWRSDVNVWLTYDKAVKSIRSEHKGLVDVAYRFLIEHGYINFGVSPEIKAKKNSSFDGIERGSVIVIGAGLAGLVAARQLVFLGFKVCILEGRDRPGGRVKTKRMFNGDGGGDGLVAAADLGGSVLTGVNGNPLGVLARQLDLPLHKVRDVCPLYMPDGKCVDSEVDSRVEVLFNKLLERVCKLRQAMIDEVKSVDVPLGTALEAFRRVYKVAEDKEERMLLNWHLANLEYANATLMSNLSMAYWDQDDPYEMGGDHCFIPGGNETFVRVLAEGLPIFYGRTVECIKYGSDGVLVCTDGQQFRADMALCTVPLGVLKKESIKFVPDLPQCKKDAIHRLGFGLLNKVVMLFPTNFWGGNIDTFGHLTEDLSMRGEFFLFYSYASVSGGPLLVALVAGEAALRFEMMSPLESVKRVLDVLKDIFHPKGIVVPEPVQAVCTRWGKDEFTYGSYSYVAVGSSGDDYDILSESIGDGRVFFAGEATSKQYPATMHGAFMSGMREAANILRVTKRKSQSSISSNTTKNIDEETDDLDKLFVKPDLNFGSFSALFNPNPNDVESSSILRVKIGGAVSNSPSLYLYALLSKKQVIELSQIEGDENRMKMLNRDFGVSLVGKKGLSSTAESLIANIKLLRPQLNEAENGLVHGKDSCIMEE