Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64567.t1 | XP_029125570.1 | 54 | 385 | 168 | 7 | 33 | 415 | 27 | 404 | 8.20E-104 | 387.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64567.t1 | P08770 | 35.2 | 355 | 210 | 10 | 45 | 386 | 141 | 488 | 8.7e-46 | 186.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64567.t1 | A0A151RYB6 | 53.9 | 386 | 167 | 8 | 33 | 415 | 27 | 404 | 1.3e-103 | 386.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene64567 | 0.817209 | 3.71E-52 | -1.69E-46 |
| MS.gene049435 | MS.gene64567 | 0.804856 | 1.77E-49 | -1.69E-46 |
| MS.gene049531 | MS.gene64567 | 0.831018 | 2.12E-55 | -1.69E-46 |
| MS.gene050026 | MS.gene64567 | 0.831777 | 1.38E-55 | -1.69E-46 |
| MS.gene050221 | MS.gene64567 | 0.808339 | 3.25E-50 | -1.69E-46 |
| MS.gene051181 | MS.gene64567 | 0.814186 | 1.75E-51 | -1.69E-46 |
| MS.gene05125 | MS.gene64567 | 0.830752 | 2.46E-55 | -1.69E-46 |
| MS.gene051594 | MS.gene64567 | 0.800275 | 1.56E-48 | -1.69E-46 |
| MS.gene051710 | MS.gene64567 | 0.824899 | 6.29E-54 | -1.69E-46 |
| MS.gene052037 | MS.gene64567 | 0.808899 | 2.47E-50 | -1.69E-46 |
| MS.gene052333 | MS.gene64567 | 0.805948 | 1.04E-49 | -1.69E-46 |
| MS.gene052447 | MS.gene64567 | 0.810008 | 1.43E-50 | -1.69E-46 |
| MS.gene052519 | MS.gene64567 | 0.803763 | 2.99E-49 | -1.69E-46 |
| MS.gene052867 | MS.gene64567 | 0.807108 | 5.94E-50 | -1.69E-46 |
| MS.gene053145 | MS.gene64567 | 0.803477 | 3.42E-49 | -1.69E-46 |
| MS.gene053201 | MS.gene64567 | 0.804014 | 2.65E-49 | -1.69E-46 |
| MS.gene053512 | MS.gene64567 | 0.826074 | 3.31E-54 | -1.69E-46 |
| MS.gene053966 | MS.gene64567 | 0.800001 | 1.77E-48 | -1.69E-46 |
| MS.gene053974 | MS.gene64567 | 0.857212 | 1.90E-62 | -1.69E-46 |
| MS.gene054236 | MS.gene64567 | 0.811739 | 6.02E-51 | -1.69E-46 |
| MS.gene054291 | MS.gene64567 | -0.826615 | 2.46E-54 | -1.69E-46 |
| MS.gene054467 | MS.gene64567 | 0.817011 | 4.11E-52 | -1.69E-46 |
| MS.gene054651 | MS.gene64567 | 0.802046 | 6.75E-49 | -1.69E-46 |
| MS.gene054801 | MS.gene64567 | 0.806243 | 9.04E-50 | -1.69E-46 |
| MS.gene055058 | MS.gene64567 | 0.826794 | 2.23E-54 | -1.69E-46 |
| MS.gene055228 | MS.gene64567 | 0.80707 | 6.05E-50 | -1.69E-46 |
| MS.gene055818 | MS.gene64567 | 0.822116 | 2.81E-53 | -1.69E-46 |
| MS.gene055875 | MS.gene64567 | 0.806511 | 7.94E-50 | -1.69E-46 |
| MS.gene056050 | MS.gene64567 | 0.828433 | 9.01E-55 | -1.69E-46 |
| MS.gene056174 | MS.gene64567 | 0.841652 | 4.17E-58 | -1.69E-46 |
| MS.gene056252 | MS.gene64567 | 0.80604 | 9.98E-50 | -1.69E-46 |
| MS.gene056854 | MS.gene64567 | 0.806664 | 7.37E-50 | -1.69E-46 |
| MS.gene057444 | MS.gene64567 | 0.801307 | 9.58E-49 | -1.69E-46 |
| MS.gene057598 | MS.gene64567 | 0.80517 | 1.52E-49 | -1.69E-46 |
| MS.gene058037 | MS.gene64567 | 0.811759 | 5.96E-51 | -1.69E-46 |
| MS.gene058294 | MS.gene64567 | 0.805345 | 1.40E-49 | -1.69E-46 |
| MS.gene058515 | MS.gene64567 | 0.870413 | 1.49E-66 | -1.69E-46 |
| MS.gene058625 | MS.gene64567 | 0.802288 | 6.02E-49 | -1.69E-46 |
| MS.gene058979 | MS.gene64567 | 0.813895 | 2.03E-51 | -1.69E-46 |
| MS.gene059272 | MS.gene64567 | 0.843676 | 1.21E-58 | -1.69E-46 |
| MS.gene059276 | MS.gene64567 | 0.842226 | 2.94E-58 | -1.69E-46 |
| MS.gene059459 | MS.gene64567 | 0.815228 | 1.03E-51 | -1.69E-46 |
| MS.gene059550 | MS.gene64567 | 0.804448 | 2.15E-49 | -1.69E-46 |
| MS.gene059584 | MS.gene64567 | 0.833269 | 5.88E-56 | -1.69E-46 |
| MS.gene060011 | MS.gene64567 | 0.828726 | 7.66E-55 | -1.69E-46 |
| MS.gene060134 | MS.gene64567 | 0.802123 | 6.51E-49 | -1.69E-46 |
| MS.gene060167 | MS.gene64567 | 0.823757 | 1.17E-53 | -1.69E-46 |
| MS.gene06052 | MS.gene64567 | 0.808363 | 3.21E-50 | -1.69E-46 |
| MS.gene060919 | MS.gene64567 | 0.807095 | 5.98E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64567.t1 | MTR_4g120840 | 39.362 | 94 | 56 | 1 | 122 | 214 | 12 | 105 | 1.29e-15 | 72.8 |
| MS.gene64567.t1 | MTR_7g106390 | 34.579 | 107 | 67 | 1 | 84 | 190 | 75 | 178 | 7.81e-15 | 72.8 |
| MS.gene64567.t1 | MTR_4g107900 | 34.579 | 107 | 67 | 1 | 84 | 190 | 75 | 178 | 8.27e-15 | 72.8 |
| MS.gene64567.t1 | MTR_6g027800 | 38.667 | 75 | 46 | 0 | 116 | 190 | 25 | 99 | 1.09e-13 | 67.8 |
| MS.gene64567.t1 | MTR_5g023055 | 38.889 | 90 | 52 | 1 | 84 | 173 | 21 | 107 | 1.48e-13 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64567.t1 | AT3G42170 | 28.608 | 395 | 244 | 12 | 43 | 415 | 66 | 444 | 1.05e-39 | 151 |
| MS.gene64567.t1 | AT3G42170 | 28.354 | 395 | 245 | 12 | 43 | 415 | 44 | 422 | 1.10e-39 | 151 |
| MS.gene64567.t1 | AT1G18560 | 22.571 | 350 | 228 | 14 | 49 | 379 | 59 | 384 | 1.17e-11 | 67.4 |
Find 93 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATTCGTCATGCTGTTAAA+TGG | 0.226041 | 7.3:-44711721 | MS.gene64567:CDS |
| TGGGACAATCACGTCCTAAA+TGG | 0.268359 | 7.3:-44711833 | MS.gene64567:CDS |
| TTAAACCTTATTGTGAAATC+TGG | 0.306371 | 7.3:-44711776 | MS.gene64567:CDS |
| TAAGTCATTAGATGTCATTT+AGG | 0.320908 | 7.3:-44711399 | None:intergenic |
| TGTGAACATAATCCCCATTT+AGG | 0.321864 | 7.3:+44711819 | None:intergenic |
| TCAAGCCAGATTTCACAATA+AGG | 0.329442 | 7.3:+44711771 | None:intergenic |
| ATACATTGAGGCGTGACATC+TGG | 0.332014 | 7.3:-44712180 | MS.gene64567:CDS |
| GTACCCGACATAGGGGAAAA+TGG | 0.334827 | 7.3:-44712523 | MS.gene64567:CDS |
| TGCATAACATGATGGGTTCT+TGG | 0.338923 | 7.3:-44711853 | MS.gene64567:CDS |
| TGACACTTATTTGAGGGATT+GGG | 0.351965 | 7.3:-44711945 | MS.gene64567:CDS |
| AGGGGAAAATGGAAAGAAAA+AGG | 0.354761 | 7.3:-44712512 | MS.gene64567:CDS |
| TTGACACTTATTTGAGGGAT+TGG | 0.369677 | 7.3:-44711946 | MS.gene64567:CDS |
| CAAATCCTCGCCATCTAGAT+TGG | 0.370694 | 7.3:-44711696 | MS.gene64567:CDS |
| TTTCCTTGATTGGGTCCCTT+GGG | 0.382544 | 7.3:+44712393 | None:intergenic |
| CCTCAGCTCATTGTGATTAG+TGG | 0.394028 | 7.3:-44712472 | MS.gene64567:CDS |
| GGGACAATCACGTCCTAAAT+GGG | 0.402021 | 7.3:-44711832 | MS.gene64567:CDS |
| TGAGCTCCCATTCCGCTTTG+TGG | 0.409066 | 7.3:-44712266 | MS.gene64567:CDS |
| GGCGCTCTATATTGAGGAGT+TGG | 0.420264 | 7.3:-44712158 | MS.gene64567:CDS |
| GACACTTATTTGAGGGATTG+GGG | 0.420586 | 7.3:-44711944 | MS.gene64567:CDS |
| CTCCCGTGTGACCCGTGATT+TGG | 0.421704 | 7.3:+44711987 | None:intergenic |
| TATTGTGAAATCTGGCTTGA+AGG | 0.427450 | 7.3:-44711768 | MS.gene64567:CDS |
| ATGGAATAACAGATGGAGAT+TGG | 0.429626 | 7.3:-44711487 | MS.gene64567:CDS |
| AGATGCTCTAAGTATAATAA+TGG | 0.432704 | 7.3:-44712421 | MS.gene64567:CDS |
| GCATAACATGATGGGTTCTT+GGG | 0.433669 | 7.3:-44711852 | MS.gene64567:CDS |
| GGTCACATTTCGTCGAGAAA+TGG | 0.442539 | 7.3:-44711525 | MS.gene64567:CDS |
| CATGTTCCACAAAGCGGAAT+GGG | 0.442781 | 7.3:+44712260 | None:intergenic |
| GCGCTCTATATTGAGGAGTT+GGG | 0.444855 | 7.3:-44712157 | MS.gene64567:CDS |
| GGTCACACGGGAGACATGTT+AGG | 0.453943 | 7.3:-44711977 | MS.gene64567:CDS |
| GATTCGTCATGCTGTTAAAT+GGG | 0.454005 | 7.3:-44711720 | MS.gene64567:CDS |
| AAAGGCCTTTCTATACTTCA+AGG | 0.455082 | 7.3:+44711568 | None:intergenic |
| AATCATTACATCATTTGCCT+TGG | 0.464135 | 7.3:+44711883 | None:intergenic |
| ATATGTTGACACTTATTTGA+GGG | 0.475799 | 7.3:-44711951 | MS.gene64567:CDS |
| TGGAATAACAGATGGAGATT+GGG | 0.483610 | 7.3:-44711486 | MS.gene64567:CDS |
| AGTACAACAACACCTTTGTA+TGG | 0.486648 | 7.3:+44711638 | None:intergenic |
| AAGGGACCCAATCAAGGAAA+AGG | 0.488607 | 7.3:-44712390 | MS.gene64567:CDS |
| TCGATATCTGCATAACATGA+TGG | 0.488983 | 7.3:-44711861 | MS.gene64567:CDS |
| CTCAATGTATTCAATGTTGA+CGG | 0.491868 | 7.3:-44711594 | MS.gene64567:CDS |
| CTATTCAAAATTTGATCAAG+AGG | 0.496012 | 7.3:-44712326 | MS.gene64567:CDS |
| CACAATACATATATATGAAA+GGG | 0.497937 | 7.3:+44711443 | None:intergenic |
| TCACAGAGGTACCCGACATA+GGG | 0.503350 | 7.3:-44712531 | MS.gene64567:CDS |
| GTTGTATGGTAAGATATTAA+CGG | 0.503435 | 7.3:-44711921 | MS.gene64567:CDS |
| ACACCCAAGGGACCCAATCA+AGG | 0.520129 | 7.3:-44712396 | MS.gene64567:CDS |
| GAACATGATGTTCAATCTAC+TGG | 0.523261 | 7.3:-44712592 | MS.gene64567:CDS |
| GCATTGAGGTTTGTTTCTTG+TGG | 0.523746 | 7.3:+44712652 | None:intergenic |
| TTTGTTTGACAACTGATACA+TGG | 0.525400 | 7.3:-44712099 | MS.gene64567:CDS |
| CTCAGCTCATTGTGATTAGT+GGG | 0.527192 | 7.3:-44712471 | MS.gene64567:CDS |
| TACATTGAGGCGTGACATCT+GGG | 0.528439 | 7.3:-44712179 | MS.gene64567:CDS |
| TCATGTTCCACAAAGCGGAA+TGG | 0.528488 | 7.3:+44712259 | None:intergenic |
| AGTGGTATGTGGAATCATCT+AGG | 0.530045 | 7.3:-44712445 | MS.gene64567:CDS |
| GCACAATACATATATATGAA+AGG | 0.531209 | 7.3:+44711442 | None:intergenic |
| AATATGTTGACACTTATTTG+AGG | 0.532577 | 7.3:-44711952 | MS.gene64567:CDS |
| TTGCCAAATCACGGGTCACA+CGG | 0.540401 | 7.3:-44711990 | MS.gene64567:CDS |
| CGATATCTGCATAACATGAT+GGG | 0.543634 | 7.3:-44711860 | MS.gene64567:CDS |
| TTCACAGAGGTACCCGACAT+AGG | 0.546657 | 7.3:-44712532 | MS.gene64567:CDS |
| TTAGTGGGACAAGTGGTATG+TGG | 0.554316 | 7.3:-44712456 | MS.gene64567:CDS |
| CATCTGGGCGCTCTATATTG+AGG | 0.558361 | 7.3:-44712164 | MS.gene64567:CDS |
| ATGGAAGAGAAAACAACGCA+TGG | 0.563172 | 7.3:-44711506 | MS.gene64567:CDS |
| CGCTCTATATTGAGGAGTTG+GGG | 0.563568 | 7.3:-44712156 | MS.gene64567:CDS |
| TACTTGATGTTGACACTCGT+TGG | 0.565341 | 7.3:-44711619 | MS.gene64567:CDS |
| CGCCTCAATGTATATCGTGA+GGG | 0.576371 | 7.3:+44712190 | None:intergenic |
| TATAATAATGGTGACACCCA+AGG | 0.579800 | 7.3:-44712409 | MS.gene64567:CDS |
| AAGTTCTCACTAATTGCGCT+CGG | 0.582273 | 7.3:+44712299 | None:intergenic |
| ACACTTATTTGAGGGATTGG+GGG | 0.584183 | 7.3:-44711943 | MS.gene64567:CDS |
| GGTTGCCTTGAAGTATAGAA+AGG | 0.587124 | 7.3:-44711573 | MS.gene64567:CDS |
| CACTAATCACAATGAGCTGA+GGG | 0.588008 | 7.3:+44712473 | None:intergenic |
| ACAACGCATGGAATAACAGA+TGG | 0.591864 | 7.3:-44711494 | MS.gene64567:CDS |
| ATTCTTCATGTTCCACAAAG+CGG | 0.593865 | 7.3:+44712254 | None:intergenic |
| GTAACAAGCGGTCTAGTGTG+TGG | 0.596589 | 7.3:-44712561 | MS.gene64567:CDS |
| TGGTAAGATATTAACGGTAA+CGG | 0.597014 | 7.3:-44711915 | MS.gene64567:CDS |
| TAACAAGCGGTCTAGTGTGT+GGG | 0.599129 | 7.3:-44712560 | MS.gene64567:CDS |
| TTCACGATCAACAAAATGAA+CGG | 0.605466 | 7.3:+44712042 | None:intergenic |
| GGCTTGAAGGAGAATAAACA+AGG | 0.609792 | 7.3:-44711755 | MS.gene64567:CDS |
| AGATTGGGACTATGTTGAAT+CGG | 0.616786 | 7.3:-44711471 | MS.gene64567:CDS |
| ATAATAATGGTGACACCCAA+GGG | 0.617188 | 7.3:-44712408 | MS.gene64567:CDS |
| TGCCAAATCACGGGTCACAC+GGG | 0.627003 | 7.3:-44711989 | MS.gene64567:CDS |
| ACGCCTCAATGTATATCGTG+AGG | 0.627733 | 7.3:+44712189 | None:intergenic |
| TCGTACGCTTAACTTGTGAA+AGG | 0.630292 | 7.3:+44711550 | None:intergenic |
| GATGAGAAAATTCCATACAA+AGG | 0.635607 | 7.3:-44711650 | MS.gene64567:CDS |
| CCACTAATCACAATGAGCTG+AGG | 0.638099 | 7.3:+44712472 | None:intergenic |
| ATAGTTCATTCGACGCATTG+AGG | 0.640756 | 7.3:+44712638 | None:intergenic |
| ATTGTGATTAGTGGGACAAG+TGG | 0.642375 | 7.3:-44712463 | MS.gene64567:CDS |
| TCACAAGTTAAGCGTACGAG+AGG | 0.647053 | 7.3:-44711546 | MS.gene64567:CDS |
| TCCCCTCACGATATACATTG+AGG | 0.649335 | 7.3:-44712192 | MS.gene64567:CDS |
| GCCTCAATGTATATCGTGAG+GGG | 0.653089 | 7.3:+44712191 | None:intergenic |
| CACAGAGGTACCCGACATAG+GGG | 0.658611 | 7.3:-44712530 | MS.gene64567:CDS |
| GGACAATCACGTCCTAAATG+GGG | 0.660028 | 7.3:-44711831 | MS.gene64567:CDS |
| CGTGAGGGGATGTCGAATCG+AGG | 0.661682 | 7.3:+44712205 | None:intergenic |
| ATGGGGATTATGTTCACATG+CGG | 0.678091 | 7.3:-44711814 | MS.gene64567:CDS |
| CTGGCAACACTAGTAACAAG+CGG | 0.678698 | 7.3:-44712573 | MS.gene64567:CDS |
| GGTAACGGTGGATAATGCCA+AGG | 0.682271 | 7.3:-44711900 | MS.gene64567:CDS |
| TAAGATATTAACGGTAACGG+TGG | 0.690791 | 7.3:-44711912 | MS.gene64567:CDS |
| GCTTGAAGGAGAATAAACAA+GGG | 0.732869 | 7.3:-44711754 | MS.gene64567:CDS |
| TGTGTGGGAACATTTCACAG+AGG | 0.819290 | 7.3:-44712545 | MS.gene64567:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CACAATACATATATATGAAA+GGG | + | chr7.3:44712642-44712661 | None:intergenic | 20.0% |
| ! | AAAAAAGTCTTGAAGAATTG+TGG | - | chr7.3:44711955-44711974 | MS.gene64567:CDS | 25.0% |
| ! | AAGGAGAAAAATCGTTAAAA+AGG | - | chr7.3:44711711-44711730 | MS.gene64567:CDS | 25.0% |
| ! | AATATGTTGACACTTATTTG+AGG | - | chr7.3:44712130-44712149 | MS.gene64567:CDS | 25.0% |
| ! | AGGAGAAAAATCGTTAAAAA+GGG | - | chr7.3:44711712-44711731 | MS.gene64567:CDS | 25.0% |
| ! | ATATGTTGACACTTATTTGA+GGG | - | chr7.3:44712131-44712150 | MS.gene64567:CDS | 25.0% |
| ! | CTATTCAAAATTTGATCAAG+AGG | - | chr7.3:44711756-44711775 | MS.gene64567:CDS | 25.0% |
| ! | GCACAATACATATATATGAA+AGG | + | chr7.3:44712643-44712662 | None:intergenic | 25.0% |
| ! | GTTGTATGGTAAGATATTAA+CGG | - | chr7.3:44712161-44712180 | MS.gene64567:CDS | 25.0% |
| ! | TTAAACCTTATTGTGAAATC+TGG | - | chr7.3:44712306-44712325 | MS.gene64567:CDS | 25.0% |
| !! | AGATGCTCTAAGTATAATAA+TGG | - | chr7.3:44711661-44711680 | MS.gene64567:CDS | 25.0% |
| !! | TGATCAAATTTTGAATAGCT+TGG | + | chr7.3:44711754-44711773 | None:intergenic | 25.0% |
| AATCATTACATCATTTGCCT+TGG | + | chr7.3:44712202-44712221 | None:intergenic | 30.0% | |
| CTCAATGTATTCAATGTTGA+CGG | - | chr7.3:44712488-44712507 | MS.gene64567:CDS | 30.0% | |
| GATGAGAAAATTCCATACAA+AGG | - | chr7.3:44712432-44712451 | MS.gene64567:CDS | 30.0% | |
| TGGTAAGATATTAACGGTAA+CGG | - | chr7.3:44712167-44712186 | MS.gene64567:CDS | 30.0% | |
| TTCACGATCAACAAAATGAA+CGG | + | chr7.3:44712043-44712062 | None:intergenic | 30.0% | |
| TTTGTTTGACAACTGATACA+TGG | - | chr7.3:44711983-44712002 | MS.gene64567:CDS | 30.0% | |
| ! | ATGAACTTTTCCAATCTAGA+TGG | + | chr7.3:44712399-44712418 | None:intergenic | 30.0% |
| ! | TTTTCTCCTTTTCCTTGATT+GGG | + | chr7.3:44711701-44711720 | None:intergenic | 30.0% |
| ! | TTTTTCTCCTTTTCCTTGAT+TGG | + | chr7.3:44711702-44711721 | None:intergenic | 30.0% |
| AAAGGCCTTTCTATACTTCA+AGG | + | chr7.3:44712517-44712536 | None:intergenic | 35.0% | |
| AGATTCGTCATGCTGTTAAA+TGG | - | chr7.3:44712361-44712380 | MS.gene64567:CDS | 35.0% | |
| AGATTGGGACTATGTTGAAT+CGG | - | chr7.3:44712611-44712630 | MS.gene64567:CDS | 35.0% | |
| AGGGGAAAATGGAAAGAAAA+AGG | - | chr7.3:44711570-44711589 | MS.gene64567:CDS | 35.0% | |
| AGTACAACAACACCTTTGTA+TGG | + | chr7.3:44712447-44712466 | None:intergenic | 35.0% | |
| ATAATAATGGTGACACCCAA+GGG | - | chr7.3:44711674-44711693 | MS.gene64567:CDS | 35.0% | |
| ATGGAATAACAGATGGAGAT+TGG | - | chr7.3:44712595-44712614 | MS.gene64567:CDS | 35.0% | |
| ATTCTTCATGTTCCACAAAG+CGG | + | chr7.3:44711831-44711850 | None:intergenic | 35.0% | |
| CGATATCTGCATAACATGAT+GGG | - | chr7.3:44712222-44712241 | MS.gene64567:CDS | 35.0% | |
| GAACATGATGTTCAATCTAC+TGG | - | chr7.3:44711490-44711509 | MS.gene64567:CDS | 35.0% | |
| GATTCGTCATGCTGTTAAAT+GGG | - | chr7.3:44712362-44712381 | MS.gene64567:CDS | 35.0% | |
| GCTTGAAGGAGAATAAACAA+GGG | - | chr7.3:44712328-44712347 | MS.gene64567:CDS | 35.0% | |
| TATAATAATGGTGACACCCA+AGG | - | chr7.3:44711673-44711692 | MS.gene64567:CDS | 35.0% | |
| TCAAGCCAGATTTCACAATA+AGG | + | chr7.3:44712314-44712333 | None:intergenic | 35.0% | |
| TCGATATCTGCATAACATGA+TGG | - | chr7.3:44712221-44712240 | MS.gene64567:CDS | 35.0% | |
| TGACACTTATTTGAGGGATT+GGG | - | chr7.3:44712137-44712156 | MS.gene64567:CDS | 35.0% | |
| TGGAATAACAGATGGAGATT+GGG | - | chr7.3:44712596-44712615 | MS.gene64567:CDS | 35.0% | |
| TGTGAACATAATCCCCATTT+AGG | + | chr7.3:44712266-44712285 | None:intergenic | 35.0% | |
| TTGACACTTATTTGAGGGAT+TGG | - | chr7.3:44712136-44712155 | MS.gene64567:CDS | 35.0% | |
| ! | ATCAACTTTTGCCAAATCAC+GGG | - | chr7.3:44712084-44712103 | MS.gene64567:CDS | 35.0% |
| ! | CATCAACTTTTGCCAAATCA+CGG | - | chr7.3:44712083-44712102 | MS.gene64567:CDS | 35.0% |
| ! | TAAGATATTAACGGTAACGG+TGG | - | chr7.3:44712170-44712189 | MS.gene64567:CDS | 35.0% |
| ! | TATTGTGAAATCTGGCTTGA+AGG | - | chr7.3:44712314-44712333 | MS.gene64567:CDS | 35.0% |
| AAGTTCTCACTAATTGCGCT+CGG | + | chr7.3:44711786-44711805 | None:intergenic | 40.0% | |
| ACAACGCATGGAATAACAGA+TGG | - | chr7.3:44712588-44712607 | MS.gene64567:CDS | 40.0% | |
| ACACTTATTTGAGGGATTGG+GGG | - | chr7.3:44712139-44712158 | MS.gene64567:CDS | 40.0% | |
| AGTGGTATGTGGAATCATCT+AGG | - | chr7.3:44711637-44711656 | MS.gene64567:CDS | 40.0% | |
| ATAGTTCATTCGACGCATTG+AGG | + | chr7.3:44711447-44711466 | None:intergenic | 40.0% | |
| ATGGAAGAGAAAACAACGCA+TGG | - | chr7.3:44712576-44712595 | MS.gene64567:CDS | 40.0% | |
| ATGGGGATTATGTTCACATG+CGG | - | chr7.3:44712268-44712287 | MS.gene64567:CDS | 40.0% | |
| ATTGTGATTAGTGGGACAAG+TGG | - | chr7.3:44711619-44711638 | MS.gene64567:CDS | 40.0% | |
| CACTAATCACAATGAGCTGA+GGG | + | chr7.3:44711612-44711631 | None:intergenic | 40.0% | |
| CTCAGCTCATTGTGATTAGT+GGG | - | chr7.3:44711611-44711630 | MS.gene64567:CDS | 40.0% | |
| GACACTTATTTGAGGGATTG+GGG | - | chr7.3:44712138-44712157 | MS.gene64567:CDS | 40.0% | |
| GGCTTGAAGGAGAATAAACA+AGG | - | chr7.3:44712327-44712346 | MS.gene64567:CDS | 40.0% | |
| GGTTGCCTTGAAGTATAGAA+AGG | - | chr7.3:44712509-44712528 | MS.gene64567:CDS | 40.0% | |
| TACTTGATGTTGACACTCGT+TGG | - | chr7.3:44712463-44712482 | MS.gene64567:CDS | 40.0% | |
| ! | CTTTCCATTTTCCCCTATGT+CGG | + | chr7.3:44711566-44711585 | None:intergenic | 40.0% |
| ! | GCATTGAGGTTTGTTTCTTG+TGG | + | chr7.3:44711433-44711452 | None:intergenic | 40.0% |
| ! | TTTCCATTTTCCCCTATGTC+GGG | + | chr7.3:44711565-44711584 | None:intergenic | 40.0% |
| !! | GCATAACATGATGGGTTCTT+GGG | - | chr7.3:44712230-44712249 | MS.gene64567:CDS | 40.0% |
| !! | TCGTACGCTTAACTTGTGAA+AGG | + | chr7.3:44712535-44712554 | None:intergenic | 40.0% |
| !! | TGCATAACATGATGGGTTCT+TGG | - | chr7.3:44712229-44712248 | MS.gene64567:CDS | 40.0% |
| AAGGGACCCAATCAAGGAAA+AGG | - | chr7.3:44711692-44711711 | MS.gene64567:CDS | 45.0% | |
| ACGCCTCAATGTATATCGTG+AGG | + | chr7.3:44711896-44711915 | None:intergenic | 45.0% | |
| ATACATTGAGGCGTGACATC+TGG | - | chr7.3:44711902-44711921 | MS.gene64567:CDS | 45.0% | |
| CAAATCCTCGCCATCTAGAT+TGG | - | chr7.3:44712386-44712405 | MS.gene64567:CDS | 45.0% | |
| CATGTTCCACAAAGCGGAAT+GGG | + | chr7.3:44711825-44711844 | None:intergenic | 45.0% | |
| CCACTAATCACAATGAGCTG+AGG | + | chr7.3:44711613-44711632 | None:intergenic | 45.0% | |
| CCTCAGCTCATTGTGATTAG+TGG | - | chr7.3:44711610-44711629 | MS.gene64567:CDS | 45.0% | |
| CGCCTCAATGTATATCGTGA+GGG | + | chr7.3:44711895-44711914 | None:intergenic | 45.0% | |
| CGCTCTATATTGAGGAGTTG+GGG | - | chr7.3:44711926-44711945 | MS.gene64567:CDS | 45.0% | |
| CTGGCAACACTAGTAACAAG+CGG | - | chr7.3:44711509-44711528 | MS.gene64567:CDS | 45.0% | |
| GCCTCAATGTATATCGTGAG+GGG | + | chr7.3:44711894-44711913 | None:intergenic | 45.0% | |
| GCGCTCTATATTGAGGAGTT+GGG | - | chr7.3:44711925-44711944 | MS.gene64567:CDS | 45.0% | |
| GGACAATCACGTCCTAAATG+GGG | - | chr7.3:44712251-44712270 | MS.gene64567:CDS | 45.0% | |
| GGGACAATCACGTCCTAAAT+GGG | - | chr7.3:44712250-44712269 | MS.gene64567:CDS | 45.0% | |
| GGTCACATTTCGTCGAGAAA+TGG | - | chr7.3:44712557-44712576 | MS.gene64567:CDS | 45.0% | |
| TAACAAGCGGTCTAGTGTGT+GGG | - | chr7.3:44711522-44711541 | MS.gene64567:CDS | 45.0% | |
| TACATTGAGGCGTGACATCT+GGG | - | chr7.3:44711903-44711922 | MS.gene64567:CDS | 45.0% | |
| TCACAAGTTAAGCGTACGAG+AGG | - | chr7.3:44712536-44712555 | MS.gene64567:CDS | 45.0% | |
| TCATGTTCCACAAAGCGGAA+TGG | + | chr7.3:44711826-44711845 | None:intergenic | 45.0% | |
| TCCCCTCACGATATACATTG+AGG | - | chr7.3:44711890-44711909 | MS.gene64567:CDS | 45.0% | |
| TGGGACAATCACGTCCTAAA+TGG | - | chr7.3:44712249-44712268 | MS.gene64567:CDS | 45.0% | |
| TGTGTGGGAACATTTCACAG+AGG | - | chr7.3:44711537-44711556 | MS.gene64567:CDS | 45.0% | |
| TTAGTGGGACAAGTGGTATG+TGG | - | chr7.3:44711626-44711645 | MS.gene64567:CDS | 45.0% | |
| TTTCCTTGATTGGGTCCCTT+GGG | + | chr7.3:44711692-44711711 | None:intergenic | 45.0% | |
| ! | CTTTTCCAATCTAGATGGCG+AGG | + | chr7.3:44712394-44712413 | None:intergenic | 45.0% |
| ! | TTTTCCTTGATTGGGTCCCT+TGG | + | chr7.3:44711693-44711712 | None:intergenic | 45.0% |
| CATCTGGGCGCTCTATATTG+AGG | - | chr7.3:44711918-44711937 | MS.gene64567:CDS | 50.0% | |
| GGCGCTCTATATTGAGGAGT+TGG | - | chr7.3:44711924-44711943 | MS.gene64567:CDS | 50.0% | |
| GTAACAAGCGGTCTAGTGTG+TGG | - | chr7.3:44711521-44711540 | MS.gene64567:CDS | 50.0% | |
| GTACCCGACATAGGGGAAAA+TGG | - | chr7.3:44711559-44711578 | MS.gene64567:CDS | 50.0% | |
| TTGAGGGATTGGGGGTTGTA+TGG | - | chr7.3:44712147-44712166 | MS.gene64567:CDS | 50.0% | |
| TTGCCAAATCACGGGTCACA+CGG | - | chr7.3:44712092-44712111 | MS.gene64567:CDS | 50.0% | |
| ! | GGTAACGGTGGATAATGCCA+AGG | - | chr7.3:44712182-44712201 | MS.gene64567:CDS | 50.0% |
| !! | TCACAGAGGTACCCGACATA+GGG | - | chr7.3:44711551-44711570 | MS.gene64567:CDS | 50.0% |
| !! | TTCACAGAGGTACCCGACAT+AGG | - | chr7.3:44711550-44711569 | MS.gene64567:CDS | 50.0% |
| ACACCCAAGGGACCCAATCA+AGG | - | chr7.3:44711686-44711705 | MS.gene64567:CDS | 55.0% | |
| GGTCACACGGGAGACATGTT+AGG | - | chr7.3:44712105-44712124 | MS.gene64567:CDS | 55.0% | |
| TGAGCTCCCATTCCGCTTTG+TGG | - | chr7.3:44711816-44711835 | MS.gene64567:CDS | 55.0% | |
| TGCCAAATCACGGGTCACAC+GGG | - | chr7.3:44712093-44712112 | MS.gene64567:CDS | 55.0% | |
| !! | CACAGAGGTACCCGACATAG+GGG | - | chr7.3:44711552-44711571 | MS.gene64567:CDS | 55.0% |
| CGTGAGGGGATGTCGAATCG+AGG | + | chr7.3:44711880-44711899 | None:intergenic | 60.0% | |
| CTCCCGTGTGACCCGTGATT+TGG | + | chr7.3:44712098-44712117 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 44711400 | 44712704 | 44711400 | ID=MS.gene64567 |
| chr7.3 | mRNA | 44711400 | 44712704 | 44711400 | ID=MS.gene64567.t1;Parent=MS.gene64567 |
| chr7.3 | exon | 44711400 | 44712704 | 44711400 | ID=MS.gene64567.t1.exon1;Parent=MS.gene64567.t1 |
| chr7.3 | CDS | 44711400 | 44712704 | 44711400 | ID=cds.MS.gene64567.t1;Parent=MS.gene64567.t1 |
| Gene Sequence |
| Protein sequence |
