Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66280.t1 | XP_013453247.2 | 97.2 | 72 | 2 | 0 | 1 | 72 | 1 | 72 | 1.90E-34 | 154.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66280.t1 | I3S8S0 | 97.2 | 72 | 2 | 0 | 1 | 72 | 1 | 72 | 1.4e-34 | 154.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene66280 | 0.809543 | 1.80E-50 | -1.69E-46 |
| MS.gene049255 | MS.gene66280 | 0.817519 | 3.16E-52 | -1.69E-46 |
| MS.gene049341 | MS.gene66280 | 0.838079 | 3.56E-57 | -1.69E-46 |
| MS.gene049404 | MS.gene66280 | 0.807093 | 5.98E-50 | -1.69E-46 |
| MS.gene049501 | MS.gene66280 | 0.804083 | 2.56E-49 | -1.69E-46 |
| MS.gene049808 | MS.gene66280 | 0.817307 | 3.53E-52 | -1.69E-46 |
| MS.gene049887 | MS.gene66280 | 0.8044 | 2.20E-49 | -1.69E-46 |
| MS.gene049979 | MS.gene66280 | 0.805438 | 1.33E-49 | -1.69E-46 |
| MS.gene050020 | MS.gene66280 | 0.8019 | 7.24E-49 | -1.69E-46 |
| MS.gene050237 | MS.gene66280 | 0.834951 | 2.23E-56 | -1.69E-46 |
| MS.gene050689 | MS.gene66280 | 0.811813 | 5.80E-51 | -1.69E-46 |
| MS.gene050807 | MS.gene66280 | 0.838483 | 2.80E-57 | -1.69E-46 |
| MS.gene050808 | MS.gene66280 | 0.801033 | 1.09E-48 | -1.69E-46 |
| MS.gene050815 | MS.gene66280 | 0.857213 | 1.90E-62 | -1.69E-46 |
| MS.gene050838 | MS.gene66280 | 0.800584 | 1.35E-48 | -1.69E-46 |
| MS.gene051241 | MS.gene66280 | 0.80271 | 4.93E-49 | -1.69E-46 |
| MS.gene051243 | MS.gene66280 | 0.839717 | 1.34E-57 | -1.69E-46 |
| MS.gene051245 | MS.gene66280 | 0.801068 | 1.07E-48 | -1.69E-46 |
| MS.gene051328 | MS.gene66280 | 0.855282 | 7.00E-62 | -1.69E-46 |
| MS.gene05134 | MS.gene66280 | 0.822772 | 1.98E-53 | -1.69E-46 |
| MS.gene051577 | MS.gene66280 | 0.860382 | 2.15E-63 | -1.69E-46 |
| MS.gene051719 | MS.gene66280 | 0.802348 | 5.86E-49 | -1.69E-46 |
| MS.gene052133 | MS.gene66280 | 0.815667 | 8.22E-52 | -1.69E-46 |
| MS.gene052376 | MS.gene66280 | 0.803516 | 3.36E-49 | -1.69E-46 |
| MS.gene052516 | MS.gene66280 | 0.807065 | 6.06E-50 | -1.69E-46 |
| MS.gene052519 | MS.gene66280 | 0.802107 | 6.56E-49 | -1.69E-46 |
| MS.gene052561 | MS.gene66280 | 0.823191 | 1.58E-53 | -1.69E-46 |
| MS.gene052665 | MS.gene66280 | 0.826919 | 2.08E-54 | -1.69E-46 |
| MS.gene052863 | MS.gene66280 | 0.814282 | 1.67E-51 | -1.69E-46 |
| MS.gene052896 | MS.gene66280 | 0.802248 | 6.14E-49 | -1.69E-46 |
| MS.gene052947 | MS.gene66280 | 0.814199 | 1.74E-51 | -1.69E-46 |
| MS.gene053008 | MS.gene66280 | 0.807102 | 5.96E-50 | -1.69E-46 |
| MS.gene053581 | MS.gene66280 | 0.811389 | 7.18E-51 | -1.69E-46 |
| MS.gene054472 | MS.gene66280 | 0.819754 | 9.84E-53 | -1.69E-46 |
| MS.gene055466 | MS.gene66280 | 0.826546 | 2.56E-54 | -1.69E-46 |
| MS.gene055468 | MS.gene66280 | 0.836184 | 1.09E-56 | -1.69E-46 |
| MS.gene055512 | MS.gene66280 | 0.805821 | 1.11E-49 | -1.69E-46 |
| MS.gene055580 | MS.gene66280 | -0.828824 | 7.25E-55 | -1.69E-46 |
| MS.gene055608 | MS.gene66280 | 0.803753 | 3.00E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene66280 | 0.818787 | 1.63E-52 | -1.69E-46 |
| MS.gene056043 | MS.gene66280 | -0.829434 | 5.16E-55 | -1.69E-46 |
| MS.gene056366 | MS.gene66280 | 0.820592 | 6.32E-53 | -1.69E-46 |
| MS.gene056580 | MS.gene66280 | 0.80508 | 1.59E-49 | -1.69E-46 |
| MS.gene056595 | MS.gene66280 | 0.802648 | 5.08E-49 | -1.69E-46 |
| MS.gene056760 | MS.gene66280 | 0.825731 | 4.00E-54 | -1.69E-46 |
| MS.gene057057 | MS.gene66280 | 0.804999 | 1.65E-49 | -1.69E-46 |
| MS.gene057140 | MS.gene66280 | 0.838447 | 2.86E-57 | -1.69E-46 |
| MS.gene057234 | MS.gene66280 | 0.807215 | 5.64E-50 | -1.69E-46 |
| MS.gene057444 | MS.gene66280 | 0.81133 | 7.39E-51 | -1.69E-46 |
| MS.gene057705 | MS.gene66280 | 0.815132 | 1.08E-51 | -1.69E-46 |
| MS.gene058009 | MS.gene66280 | 0.821539 | 3.83E-53 | -1.69E-46 |
| MS.gene058055 | MS.gene66280 | 0.811274 | 7.60E-51 | -1.69E-46 |
| MS.gene058636 | MS.gene66280 | 0.801278 | 9.71E-49 | -1.69E-46 |
| MS.gene058646 | MS.gene66280 | 0.807796 | 4.24E-50 | -1.69E-46 |
| MS.gene058852 | MS.gene66280 | 0.807574 | 4.73E-50 | -1.69E-46 |
| MS.gene058906 | MS.gene66280 | 0.855788 | 4.99E-62 | -1.69E-46 |
| MS.gene05954 | MS.gene66280 | 0.803031 | 4.23E-49 | -1.69E-46 |
| MS.gene059842 | MS.gene66280 | 0.823749 | 1.17E-53 | -1.69E-46 |
| MS.gene059937 | MS.gene66280 | 0.829207 | 5.86E-55 | -1.69E-46 |
| MS.gene06001 | MS.gene66280 | 0.820194 | 7.80E-53 | -1.69E-46 |
| MS.gene060429 | MS.gene66280 | 0.856658 | 2.77E-62 | -1.69E-46 |
| MS.gene060480 | MS.gene66280 | 0.808801 | 2.59E-50 | -1.69E-46 |
| MS.gene060587 | MS.gene66280 | 0.815127 | 1.08E-51 | -1.69E-46 |
| MS.gene060917 | MS.gene66280 | 0.833942 | 3.99E-56 | -1.69E-46 |
| MS.gene061176 | MS.gene66280 | 0.805082 | 1.58E-49 | -1.69E-46 |
| MS.gene061177 | MS.gene66280 | 0.80457 | 2.03E-49 | -1.69E-46 |
| MS.gene061178 | MS.gene66280 | 0.804709 | 1.90E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66280.t1 | MTR_6g093010 | 96.429 | 56 | 2 | 0 | 1 | 56 | 1 | 56 | 1.99e-35 | 114 |
| MS.gene66280.t1 | MTR_8g107150 | 80.000 | 35 | 7 | 0 | 37 | 71 | 20 | 54 | 1.74e-13 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene66280.t1 | AT2G31490 | 81.429 | 70 | 13 | 0 | 1 | 70 | 1 | 70 | 3.79e-41 | 129 |
Find 18 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTCGCAATCTTCTTCTTGT+TGG | 0.305084 | 6.4:+63921865 | MS.gene66280:CDS |
| CTTCTTCTTGTTGGTATCTT+CGG | 0.319314 | 6.4:+63921874 | MS.gene66280:CDS |
| AAACAAATACATTGAAGATT+GGG | 0.354310 | 6.4:+63921801 | MS.gene66280:CDS |
| AAAACAAATACATTGAAGAT+TGG | 0.399418 | 6.4:+63921800 | MS.gene66280:CDS |
| ATGCCTTTGTAGACGAGAAC+AGG | 0.444933 | 6.4:-63921907 | None:intergenic |
| TAAGGCTTGAACTTCCTGTA+TGG | 0.491957 | 6.4:-63924926 | None:intergenic |
| AAGACAATGGCCGACCATAC+AGG | 0.509897 | 6.4:+63924912 | MS.gene66280:CDS |
| ATCGAAAATGGGTGGAGGAA+TGG | 0.519119 | 6.4:+63921768 | None:intergenic |
| TTGAAGATTGGGGAACTGCT+AGG | 0.519133 | 6.4:+63921812 | MS.gene66280:CDS |
| ATCTCGAACACAATTTCCGT+TGG | 0.534903 | 6.4:+63921839 | MS.gene66280:CDS |
| TGAAGATTGGGGAACTGCTA+GGG | 0.554642 | 6.4:+63921813 | MS.gene66280:CDS |
| GAAGATTGCGACGAGTCCAA+CGG | 0.565690 | 6.4:-63921855 | None:intergenic |
| AACAAATACATTGAAGATTG+GGG | 0.581008 | 6.4:+63921802 | MS.gene66280:CDS |
| GCTTGAACTTCCTGTATGGT+CGG | 0.587228 | 6.4:-63924922 | None:intergenic |
| TCATCATCGAAAATGGGTGG+AGG | 0.601325 | 6.4:+63921763 | None:intergenic |
| GTTCCTGTTCTCGTCTACAA+AGG | 0.608218 | 6.4:+63921904 | MS.gene66280:CDS |
| TTATCATCATCGAAAATGGG+TGG | 0.631838 | 6.4:+63921760 | None:intergenic |
| CATATGCAAGATGAAGACAA+TGG | 0.724975 | 6.4:+63924899 | MS.gene66280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAATTTATTATAGATAACA+AGG | - | chr6.4:63924398-63924417 | None:intergenic | 15.0% |
| !!! | AACTTATTTTCAATTGTTTT+GGG | + | chr6.4:63922124-63922143 | MS.gene66280:intron | 15.0% |
| !!! | TGTTTTATTATAAGCTATTT+TGG | + | chr6.4:63922956-63922975 | MS.gene66280:intron | 15.0% |
| !! | AAAAAATAAGTCAATCCAAA+AGG | - | chr6.4:63922151-63922170 | None:intergenic | 20.0% |
| !! | AAAACAAATACATTGAAGAT+TGG | + | chr6.4:63921800-63921819 | MS.gene66280:CDS | 20.0% |
| !! | AAACAAATACATTGAAGATT+GGG | + | chr6.4:63921801-63921820 | MS.gene66280:CDS | 20.0% |
| !! | AATAAGTTGTATATCAAAAC+AGG | + | chr6.4:63924227-63924246 | MS.gene66280:intron | 20.0% |
| !! | AATTGTTAAATGATGTGATA+TGG | + | chr6.4:63924786-63924805 | MS.gene66280:intron | 20.0% |
| !! | ATAAGTTGTATATCAAAACA+GGG | + | chr6.4:63924228-63924247 | MS.gene66280:intron | 20.0% |
| !! | ATTTCTGAATAGTTCAATTT+AGG | + | chr6.4:63921989-63922008 | MS.gene66280:intron | 20.0% |
| !! | GAAAAATTGTGTTTATCTAA+GGG | - | chr6.4:63922331-63922350 | None:intergenic | 20.0% |
| !! | TATTAACAACTCAGAATTTA+GGG | + | chr6.4:63922574-63922593 | MS.gene66280:intron | 20.0% |
| !! | TGAAAAATTGTGTTTATCTA+AGG | - | chr6.4:63922332-63922351 | None:intergenic | 20.0% |
| !! | TTATTAACAACTCAGAATTT+AGG | + | chr6.4:63922573-63922592 | MS.gene66280:intron | 20.0% |
| !!! | AACACATTTTAGCATTATTT+TGG | + | chr6.4:63922383-63922402 | MS.gene66280:intron | 20.0% |
| !!! | ACACATTTTAGCATTATTTT+GGG | + | chr6.4:63922384-63922403 | MS.gene66280:intron | 20.0% |
| !!! | CAACTTATTTTCAATTGTTT+TGG | + | chr6.4:63922123-63922142 | MS.gene66280:intron | 20.0% |
| !!! | CAATTTTTACAAGCTTTTTT+CGG | - | chr6.4:63923000-63923019 | None:intergenic | 20.0% |
| !!! | GATACTGATTTATTTTTTAC+TGG | + | chr6.4:63924438-63924457 | MS.gene66280:intron | 20.0% |
| !!! | TTCCTAGTTTTGTTAAATAA+TGG | + | chr6.4:63923860-63923879 | MS.gene66280:intron | 20.0% |
| ! | AAAAATAAGCCAATCCAAAT+TGG | + | chr6.4:63922305-63922324 | MS.gene66280:intron | 25.0% |
| ! | AAATCATGTCATCATGTATT+AGG | - | chr6.4:63923583-63923602 | None:intergenic | 25.0% |
| ! | AACAAATACATTGAAGATTG+GGG | + | chr6.4:63921802-63921821 | MS.gene66280:CDS | 25.0% |
| ! | AACAGTTCAAAAGAATTTAG+GGG | + | chr6.4:63922632-63922651 | MS.gene66280:intron | 25.0% |
| ! | AATAAAAACAAACGTTAACC+AGG | - | chr6.4:63924254-63924273 | None:intergenic | 25.0% |
| ! | ACAACAGTTCAAAAGAATTT+AGG | + | chr6.4:63922630-63922649 | MS.gene66280:intron | 25.0% |
| ! | ACGTTATTTGAGCTTATATA+TGG | + | chr6.4:63922029-63922048 | MS.gene66280:intron | 25.0% |
| ! | AGCCATTATTTAACAAAACT+AGG | - | chr6.4:63923865-63923884 | None:intergenic | 25.0% |
| ! | AGGAACTAAATAGCATATAA+CGG | - | chr6.4:63923845-63923864 | None:intergenic | 25.0% |
| ! | AGTTCAATTTAGGAATTTGA+GGG | + | chr6.4:63921999-63922018 | MS.gene66280:intron | 25.0% |
| ! | ATAAATCAGTATCATGTATG+AGG | - | chr6.4:63924431-63924450 | None:intergenic | 25.0% |
| ! | ATTATAGATAACAAGGTTTG+TGG | - | chr6.4:63924391-63924410 | None:intergenic | 25.0% |
| ! | CAACAGTTCAAAAGAATTTA+GGG | + | chr6.4:63922631-63922650 | MS.gene66280:intron | 25.0% |
| ! | CAATCTAAACAAATTGAGTA+TGG | + | chr6.4:63923343-63923362 | MS.gene66280:intron | 25.0% |
| ! | CAGAATTTAGGGATTTAATT+AGG | + | chr6.4:63922585-63922604 | MS.gene66280:intron | 25.0% |
| ! | CCAAACAATAAAATGAATCA+TGG | - | chr6.4:63924715-63924734 | None:intergenic | 25.0% |
| ! | GTTGTTAATAAATTGACCAA+TGG | - | chr6.4:63922564-63922583 | None:intergenic | 25.0% |
| ! | TAAATGCTTGCTTGAATTAT+TGG | + | chr6.4:63923394-63923413 | MS.gene66280:intron | 25.0% |
| ! | TAGTTCAATTTAGGAATTTG+AGG | + | chr6.4:63921998-63922017 | MS.gene66280:intron | 25.0% |
| ! | TCAAATAAGCTAATACAAAC+AGG | + | chr6.4:63924129-63924148 | MS.gene66280:intron | 25.0% |
| ! | TCCATACATACATGAAAAAA+AGG | - | chr6.4:63924840-63924859 | None:intergenic | 25.0% |
| ! | TGATTATTTCAATCTACCAT+TGG | + | chr6.4:63922545-63922564 | MS.gene66280:intron | 25.0% |
| ! | TGGTTGTAATGTTTAAATTG+TGG | + | chr6.4:63923414-63923433 | MS.gene66280:intron | 25.0% |
| ! | TTAATGCTTGCTTGAATTAT+TGG | + | chr6.4:63923451-63923470 | MS.gene66280:intron | 25.0% |
| !! | AAAATTGGATTTCAAGCTTT+TGG | + | chr6.4:63923295-63923314 | MS.gene66280:intron | 25.0% |
| !! | AAAGCTTGAAATCCAATTTT+AGG | - | chr6.4:63923295-63923314 | None:intergenic | 25.0% |
| !! | AAGTTTAAGATGTTGAATCA+TGG | + | chr6.4:63924354-63924373 | MS.gene66280:intron | 25.0% |
| !! | CAATTTTAAACCTAACCAAA+AGG | - | chr6.4:63924015-63924034 | None:intergenic | 25.0% |
| !! | CCATGATTCATTTTATTGTT+TGG | + | chr6.4:63924712-63924731 | MS.gene66280:intron | 25.0% |
| !!! | AAGAATTTAGGGGTTTTATT+AGG | + | chr6.4:63922642-63922661 | MS.gene66280:intron | 25.0% |
| !!! | ACCTTTTTTTCATGTATGTA+TGG | + | chr6.4:63924836-63924855 | MS.gene66280:intron | 25.0% |
| !!! | CTTTTGGTTAGGTTTAAAAT+TGG | + | chr6.4:63924013-63924032 | MS.gene66280:intron | 25.0% |
| AAGAGAGAAGAAGATGAAAA+TGG | - | chr6.4:63921957-63921976 | None:intergenic | 30.0% | |
| ACAAACAACAAAACCAATCA+TGG | - | chr6.4:63923983-63924002 | None:intergenic | 30.0% | |
| AGGTAGAAGTGAAAACAAAA+TGG | - | chr6.4:63924820-63924839 | None:intergenic | 30.0% | |
| ATCCAAACAAGTCCTAAAAT+TGG | + | chr6.4:63923280-63923299 | MS.gene66280:intron | 30.0% | |
| CTTACATAAGCTTATAGCAT+GGG | - | chr6.4:63922901-63922920 | None:intergenic | 30.0% | |
| GCAAATAATTAAGCTTGTCA+AGG | + | chr6.4:63922178-63922197 | MS.gene66280:intron | 30.0% | |
| TACTGGATATTTGAACTACT+AGG | + | chr6.4:63924455-63924474 | MS.gene66280:intron | 30.0% | |
| TGGAAATTTAAGCTTCATCT+TGG | - | chr6.4:63924602-63924621 | None:intergenic | 30.0% | |
| TTGAACGTATAATGTGTGTT+TGG | - | chr6.4:63924561-63924580 | None:intergenic | 30.0% | |
| TTTCAAAGCCATAGTATGTA+AGG | - | chr6.4:63923701-63923720 | None:intergenic | 30.0% | |
| ! | GAATTTAAAGTTTGCGATGT+TGG | + | chr6.4:63923492-63923511 | MS.gene66280:intron | 30.0% |
| !! | ATAAGTTTTGTGAGACTGTT+TGG | - | chr6.4:63924095-63924114 | None:intergenic | 30.0% |
| !! | ATAAGTTTTGTGAGCTTGAT+TGG | + | chr6.4:63922054-63922073 | MS.gene66280:intron | 30.0% |
| !! | ATTTTGATCAAGTCTGTGTT+TGG | + | chr6.4:63922824-63922843 | MS.gene66280:intron | 30.0% |
| !! | TTGTTATGAATGCATTGACT+TGG | + | chr6.4:63922793-63922812 | MS.gene66280:intron | 30.0% |
| !!! | ATCCAATTTTAGGACTTGTT+TGG | - | chr6.4:63923285-63923304 | None:intergenic | 30.0% |
| ACAAGCAATTAGACCTTCTA+TGG | + | chr6.4:63923752-63923771 | MS.gene66280:intron | 35.0% | |
| ACGTATAATGTGTGTTTGGT+TGG | - | chr6.4:63924557-63924576 | None:intergenic | 35.0% | |
| AGAAGGTCTAATTGCTTGTT+TGG | - | chr6.4:63923751-63923770 | None:intergenic | 35.0% | |
| CAAGCAATTAGACCTTCTAT+GGG | + | chr6.4:63923753-63923772 | MS.gene66280:intron | 35.0% | |
| CATATGCAAGATGAAGACAA+TGG | + | chr6.4:63924899-63924918 | MS.gene66280:CDS | 35.0% | |
| CCAATTTACTACAGCTAACA+AGG | - | chr6.4:63923550-63923569 | None:intergenic | 35.0% | |
| CCTTGTTAGCTGTAGTAAAT+TGG | + | chr6.4:63923547-63923566 | MS.gene66280:intron | 35.0% | |
| CTTCTTCTTGTTGGTATCTT+CGG | + | chr6.4:63921874-63921893 | MS.gene66280:CDS | 35.0% | |
| GAAGAAGATGAAAATGGAAG+TGG | - | chr6.4:63921951-63921970 | None:intergenic | 35.0% | |
| GCTTACATAAGCTTATAGCA+TGG | - | chr6.4:63922902-63922921 | None:intergenic | 35.0% | |
| GTAAGGTCTAATTGCTTGTT+TGG | - | chr6.4:63924678-63924697 | None:intergenic | 35.0% | |
| TAGGTGTATGTTTGGTATCA+TGG | + | chr6.4:63924474-63924493 | MS.gene66280:intron | 35.0% | |
| TCAAATAAGCCAATCCAAAC+AGG | + | chr6.4:63923082-63923101 | MS.gene66280:intron | 35.0% | |
| TCAATTTAGGAATTTGAGGG+AGG | + | chr6.4:63922002-63922021 | MS.gene66280:intron | 35.0% | |
| TGAACTACTAGGTGTATGTT+TGG | + | chr6.4:63924466-63924485 | MS.gene66280:intron | 35.0% | |
| TGTTTATCTAAGGGCCAATT+TGG | - | chr6.4:63922322-63922341 | None:intergenic | 35.0% | |
| ! | AACTTGTTCTAATTTCGCGA+GGG | - | chr6.4:63923813-63923832 | None:intergenic | 35.0% |
| ! | ATTGACAACCCTAGACTTTT+CGG | + | chr6.4:63923950-63923969 | MS.gene66280:intron | 35.0% |
| ! | GGATTCATGTTTTCTTAGCT+CGG | - | chr6.4:63923730-63923749 | None:intergenic | 35.0% |
| ! | TAGCTTTTGCAAAATCACAG+TGG | + | chr6.4:63924499-63924518 | MS.gene66280:intron | 35.0% |
| !! | AACTGTATTTTGAGCCTGTT+TGG | - | chr6.4:63923099-63923118 | None:intergenic | 35.0% |
| !! | GTTTGTTGCTGAATTCCTTT+TGG | + | chr6.4:63923997-63924016 | MS.gene66280:intron | 35.0% |
| !! | TAACTTGTTCTAATTTCGCG+AGG | - | chr6.4:63923814-63923833 | None:intergenic | 35.0% |
| !! | TATTTTGAGCCTGTTTGGAT+TGG | - | chr6.4:63923094-63923113 | None:intergenic | 35.0% |
| !! | TTGCTGAATTCCTTTTGGTT+AGG | + | chr6.4:63924002-63924021 | MS.gene66280:intron | 35.0% |
| !!! | AGCATTATTTTGGGTCTGTT+AGG | + | chr6.4:63922393-63922412 | MS.gene66280:intron | 35.0% |
| !!! | GGATTTCAAGCTTTTGGAAT+CGG | + | chr6.4:63923301-63923320 | MS.gene66280:intron | 35.0% |
| !!! | TCAATTGTTTTGGGACCTTT+TGG | + | chr6.4:63922133-63922152 | MS.gene66280:intron | 35.0% |
| ATCTAAGGGCCAATTTGGAT+TGG | - | chr6.4:63922317-63922336 | None:intergenic | 40.0% | |
| ATCTCGAACACAATTTCCGT+TGG | + | chr6.4:63921839-63921858 | MS.gene66280:CDS | 40.0% | |
| CTACTAACATAAGCACCTGT+GGG | - | chr6.4:63923242-63923261 | None:intergenic | 40.0% | |
| GCTTATTTGAGCTTACCAAC+TGG | - | chr6.4:63923072-63923091 | None:intergenic | 40.0% | |
| GGGTTGTCAAACTCAAATAG+TGG | + | chr6.4:63923773-63923792 | MS.gene66280:intron | 40.0% | |
| TAAGGCTTGAACTTCCTGTA+TGG | - | chr6.4:63924929-63924948 | None:intergenic | 40.0% | |
| TCTACTAACATAAGCACCTG+TGG | - | chr6.4:63923243-63923262 | None:intergenic | 40.0% | |
| TGAGTTTGACAACCCATAGA+AGG | - | chr6.4:63923768-63923787 | None:intergenic | 40.0% | |
| TTGGGTCTGTTAGGATAAAC+AGG | + | chr6.4:63922402-63922421 | MS.gene66280:intron | 40.0% | |
| TTGTATATCAAAACAGGGCC+TGG | + | chr6.4:63924233-63924252 | MS.gene66280:intron | 40.0% | |
| TTTGCACCTTATAGCACAAG+CGG | + | chr6.4:63922860-63922879 | MS.gene66280:intron | 40.0% | |
| TTTGTAACATGAGCCAAGCT+AGG | + | chr6.4:63924641-63924660 | MS.gene66280:intron | 40.0% | |
| ! | GGATTCTCATTTTCCTAGCT+TGG | - | chr6.4:63924657-63924676 | None:intergenic | 40.0% |
| ! | TGGACATTGGAGCTTCATTT+TGG | - | chr6.4:63923675-63923694 | None:intergenic | 40.0% |
| ! | TGTGTGTTTGGTTGGTATCA+CGG | - | chr6.4:63924549-63924568 | None:intergenic | 40.0% |
| AACAAGGTCTGTAGACAGTG+CGG | - | chr6.4:63923534-63923553 | None:intergenic | 45.0% | |
| AGCCATAGTATGTAAGGAGC+TGG | - | chr6.4:63923695-63923714 | None:intergenic | 45.0% | |
| ATGCCTTTGTAGACGAGAAC+AGG | - | chr6.4:63921910-63921929 | None:intergenic | 45.0% | |
| CGTCGCAATCTTCTTCTTGT+TGG | + | chr6.4:63921865-63921884 | MS.gene66280:CDS | 45.0% | |
| CTCATGACGCAACATTGTGA+TGG | - | chr6.4:63922714-63922733 | None:intergenic | 45.0% | |
| GAGTGAGTCCGAAAAGTCTA+GGG | - | chr6.4:63923961-63923980 | None:intergenic | 45.0% | |
| GCTTGAACTTCCTGTATGGT+CGG | - | chr6.4:63924925-63924944 | None:intergenic | 45.0% | |
| GTATGTAAGGAGCTGGACAT+TGG | - | chr6.4:63923688-63923707 | None:intergenic | 45.0% | |
| GTCCAGCTCCTTACATACTA+TGG | + | chr6.4:63923690-63923709 | MS.gene66280:intron | 45.0% | |
| GTTCCTGTTCTCGTCTACAA+AGG | + | chr6.4:63921904-63921923 | MS.gene66280:CDS | 45.0% | |
| GTTGTAGCATTGCAACGTAG+TGG | + | chr6.4:63923893-63923912 | MS.gene66280:intron | 45.0% | |
| TGAAGATTGGGGAACTGCTA+GGG | + | chr6.4:63921813-63921832 | MS.gene66280:CDS | 45.0% | |
| TGCGATGTTGGAGCATAGAT+GGG | + | chr6.4:63923504-63923523 | MS.gene66280:intron | 45.0% | |
| TGGAGCGACTCAAGAAAGTA+AGG | - | chr6.4:63924695-63924714 | None:intergenic | 45.0% | |
| TGGCTCATGTTACAAAGCCA+AGG | - | chr6.4:63924637-63924656 | None:intergenic | 45.0% | |
| TTCCAGCTTCTCACAAACCT+TGG | + | chr6.4:63924617-63924636 | MS.gene66280:intron | 45.0% | |
| TTGAAGATTGGGGAACTGCT+AGG | + | chr6.4:63921812-63921831 | MS.gene66280:CDS | 45.0% | |
| TTGCAGACTGCGGAAAATAG+TGG | - | chr6.4:63923931-63923950 | None:intergenic | 45.0% | |
| TTGCGATGTTGGAGCATAGA+TGG | + | chr6.4:63923503-63923522 | MS.gene66280:intron | 45.0% | |
| TTTCGGACTCACTCCATGAT+TGG | + | chr6.4:63923967-63923986 | MS.gene66280:intron | 45.0% | |
| ! | CTTCATTTTGGACGTGCGTT+TGG | - | chr6.4:63923663-63923682 | None:intergenic | 45.0% |
| AAGACAATGGCCGACCATAC+AGG | + | chr6.4:63924912-63924931 | MS.gene66280:CDS | 50.0% | |
| AGCCAAGGTTTGTGAGAAGC+TGG | - | chr6.4:63924622-63924641 | None:intergenic | 50.0% | |
| AGTTCTCCAAACAGTCCCAC+AGG | + | chr6.4:63923224-63923243 | MS.gene66280:intron | 50.0% | |
| CGACAACCGCTTGTGCTATA+AGG | - | chr6.4:63922869-63922888 | None:intergenic | 50.0% | |
| CTCACAAGACTTGTGCCAGT+TGG | + | chr6.4:63923054-63923073 | MS.gene66280:intron | 50.0% | |
| GAAGATTGCGACGAGTCCAA+CGG | - | chr6.4:63921858-63921877 | None:intergenic | 50.0% | |
| GGAGTGAGTCCGAAAAGTCT+AGG | - | chr6.4:63923962-63923981 | None:intergenic | 50.0% | |
| GGGTTGTCAATTGCAGACTG+CGG | - | chr6.4:63923941-63923960 | None:intergenic | 50.0% | |
| TAAGCACCTGTGGGACTGTT+TGG | - | chr6.4:63923233-63923252 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 63921775 | 63924949 | 63921775 | ID=MS.gene66280 |
| chr6.4 | mRNA | 63921775 | 63924949 | 63921775 | ID=MS.gene66280.t1;Parent=MS.gene66280 |
| chr6.4 | exon | 63921775 | 63921942 | 63921775 | ID=MS.gene66280.t1.exon1;Parent=MS.gene66280.t1 |
| chr6.4 | CDS | 63921775 | 63921942 | 63921775 | ID=cds.MS.gene66280.t1;Parent=MS.gene66280.t1 |
| chr6.4 | exon | 63924899 | 63924949 | 63924899 | ID=MS.gene66280.t1.exon2;Parent=MS.gene66280.t1 |
| chr6.4 | CDS | 63924899 | 63924949 | 63924899 | ID=cds.MS.gene66280.t1;Parent=MS.gene66280.t1 |
| Gene Sequence |
| Protein sequence |
