AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene68175

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68175.t1 MTR_3g117500 97.149 491 10 2 1 491 1 487 0.0 984
MS.gene68175.t1 MTR_8g104820 61.966 468 172 4 27 491 29 493 0.0 601
MS.gene68175.t1 MTR_3g080810 57.602 467 194 3 23 488 30 493 0.0 559
MS.gene68175.t1 MTR_3g010330 57.082 466 191 5 28 491 25 483 0.0 530
MS.gene68175.t1 MTR_4g035975 54.970 493 204 7 6 488 5 489 0.0 523
MS.gene68175.t1 MTR_4g035955 53.361 476 211 6 14 488 1 466 0.0 520
MS.gene68175.t1 MTR_1g088190 56.277 462 181 3 27 488 38 478 0.0 520
MS.gene68175.t1 MTR_4g035930 52.211 475 219 4 14 488 1 467 0.0 516
MS.gene68175.t1 MTR_8g099410 50.427 468 221 6 26 486 26 489 3.76e-164 474
MS.gene68175.t1 MTR_8g099410 50.427 468 221 6 26 486 26 489 9.57e-163 475
MS.gene68175.t1 MTR_5g010000 51.188 463 212 6 27 486 39 490 2.02e-162 469
MS.gene68175.t1 MTR_5g009970 48.180 467 228 6 27 490 40 495 3.76e-156 453
MS.gene68175.t1 MTR_3g080190 47.035 489 245 7 9 489 24 506 1.23e-153 448
MS.gene68175.t1 MTR_5g085730 42.742 496 268 8 3 489 9 497 1.38e-147 432
MS.gene68175.t1 MTR_5g093590 44.196 491 261 7 5 486 12 498 5.84e-145 425
MS.gene68175.t1 MTR_1g037340 47.228 487 241 10 9 489 6 482 1.48e-142 418
MS.gene68175.t1 MTR_3g105230 43.568 482 253 8 3 478 1 469 5.01e-142 417
MS.gene68175.t1 MTR_4g074960 46.681 467 237 6 28 486 28 490 9.69e-142 421
MS.gene68175.t1 MTR_3g023740 44.672 488 250 7 1 486 8 477 4.58e-139 409
MS.gene68175.t1 MTR_5g009970 45.540 426 218 6 68 490 7 421 2.08e-132 390
MS.gene68175.t1 MTR_3g113720 42.827 474 250 10 27 489 56 519 1.39e-120 363
MS.gene68175.t1 MTR_5g009970 44.444 405 211 6 89 490 1 394 6.28e-120 357
MS.gene68175.t1 MTR_8g075990 42.283 473 252 8 29 490 64 526 6.25e-116 352
MS.gene68175.t1 MTR_1g088190 56.352 307 113 3 27 333 38 323 1.13e-108 327
MS.gene68175.t1 MTR_5g009970 44.510 337 174 5 156 490 1 326 2.38e-95 292
MS.gene68175.t1 MTR_2g028480 39.096 509 264 16 10 485 91 586 5.64e-89 285
MS.gene68175.t1 MTR_3g082440 38.193 487 258 17 28 485 116 588 3.92e-86 277
MS.gene68175.t1 MTR_3g090540 35.306 507 290 16 7 485 84 580 3.38e-85 274
MS.gene68175.t1 MTR_7g108925 55.769 156 69 0 333 488 43 198 4.12e-60 197
MS.gene68175.t1 MTR_0393s0050 56.944 144 61 1 333 475 20 163 1.22e-50 171
MS.gene68175.t1 MTR_1g037320 46.243 173 87 3 89 259 1 169 4.71e-33 127
MS.gene68175.t1 MTR_1g037320 49.593 123 60 2 365 486 168 289 4.33e-31 122
MS.gene68175.t1 MTR_4g128810 30.556 252 128 8 243 485 117 330 4.97e-25 106
MS.gene68175.t1 MTR_7g108920 50.538 93 45 1 239 331 86 177 2.04e-20 89.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68175.t1 AT4G39010 74.468 470 119 1 23 491 24 493 0.0 744
MS.gene68175.t1 AT1G70710 60.081 491 191 3 3 491 1 488 0.0 615
MS.gene68175.t1 AT4G39000 57.819 486 204 1 7 491 4 489 0.0 591
MS.gene68175.t1 AT1G23210 57.230 491 205 3 3 491 1 488 0.0 590
MS.gene68175.t1 AT4G38990 57.377 488 199 4 10 491 8 492 0.0 578
MS.gene68175.t1 AT4G39010 72.253 364 100 1 23 385 24 387 0.0 572
MS.gene68175.t1 AT4G02290 58.874 462 187 2 27 488 51 509 0.0 571
MS.gene68175.t1 AT1G02800 59.660 471 185 3 18 488 33 498 0.0 565
MS.gene68175.t1 AT1G22880 55.144 486 210 4 7 491 3 481 0.0 516
MS.gene68175.t1 AT1G71380 54.545 484 211 5 8 490 5 480 5.94e-180 513
MS.gene68175.t1 AT4G02290 57.250 400 168 2 89 488 1 397 8.91e-167 477
MS.gene68175.t1 AT4G09740 49.691 485 228 6 12 491 4 477 5.06e-159 460
MS.gene68175.t1 AT4G11050 48.632 475 233 6 23 490 21 491 8.66e-159 462
MS.gene68175.t1 AT4G11050 48.632 475 233 6 23 490 21 491 7.09e-158 462
MS.gene68175.t1 AT4G11050 48.632 475 233 6 23 490 21 491 9.83e-158 462
MS.gene68175.t1 AT4G23560 48.454 485 237 5 9 491 4 477 6.29e-157 454
MS.gene68175.t1 AT1G64390 48.832 471 230 6 23 486 20 486 1.97e-156 458
MS.gene68175.t1 AT1G22880 55.446 404 172 4 89 491 1 397 1.01e-151 438
MS.gene68175.t1 AT2G32990 44.266 497 258 7 6 486 9 502 5.24e-148 434
MS.gene68175.t1 AT2G44540 46.362 481 245 7 11 486 16 488 3.82e-139 410
MS.gene68175.t1 AT2G44570 47.433 487 240 9 6 486 13 489 6.29e-139 409
MS.gene68175.t1 AT2G44550 46.998 483 240 9 9 486 16 487 8.34e-139 409
MS.gene68175.t1 AT2G44560 46.362 481 245 7 11 486 16 488 1.52e-136 403
MS.gene68175.t1 AT3G43860 45.161 465 240 6 28 490 34 485 5.47e-135 399
MS.gene68175.t1 AT3G43860 45.161 465 240 6 28 490 34 485 5.47e-135 399
MS.gene68175.t1 AT4G38990 55.618 356 129 3 10 364 8 335 2.41e-134 392
MS.gene68175.t1 AT1G48930 47.109 467 236 6 27 486 29 491 2.48e-132 397
MS.gene68175.t1 AT1G75680 45.852 458 231 8 29 479 58 505 6.79e-128 382
MS.gene68175.t1 AT1G19940 42.918 466 249 8 25 483 45 500 7.74e-123 369
MS.gene68175.t1 AT1G19940 42.918 466 249 8 25 483 45 500 7.74e-123 369
MS.gene68175.t1 AT1G22880 54.878 328 140 4 7 333 3 323 9.68e-111 332
MS.gene68175.t1 AT2G44570 43.890 401 210 8 6 401 13 403 6.86e-94 291
MS.gene68175.t1 AT1G19940 42.005 369 201 7 25 386 45 407 6.34e-88 276
MS.gene68175.t1 AT5G49720 37.718 517 276 16 3 485 79 583 7.52e-83 268
MS.gene68175.t1 AT1G65610 35.391 486 274 14 28 486 116 588 6.28e-81 263
MS.gene68175.t1 AT4G24260 36.327 490 268 16 28 486 108 584 1.17e-69 234
MS.gene68175.t1 AT4G24260 34.872 390 214 15 28 386 108 488 6.88e-41 153
MS.gene68175.t1 AT4G24260 36.562 320 168 12 28 319 108 420 1.57e-39 149
MS.gene68175.t1 AT3G42153 42.708 96 47 3 240 331 16 107 7.11e-15 71.2

Find 135 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCGGTGATAACATCAAATT+TGG 0.145877 3.1:+92460379 MS.gene68175:CDS
GAGATTCAACATTTCCTTCT+AGG 0.166797 3.1:-92463366 None:intergenic
CTGTTTGTGTCCATGTCTTC+TGG 0.223582 3.1:-92461564 None:intergenic
TTCAATATGCAGACAGTTAC+AGG 0.227377 3.1:+92461730 MS.gene68175:CDS
ATGTGTGAACTTGATGTTTC+AGG 0.237520 3.1:-92463436 None:intergenic
CATTGCTTTGAATGTAGTTT+AGG 0.285334 3.1:-92462981 None:intergenic
ATAAACATTGCCACAATTGA+TGG 0.289598 3.1:-92463575 None:intergenic
CTCATCTCTACCTTCTATTA+AGG 0.295970 3.1:+92463726 MS.gene68175:CDS
CGCACTTGCTGCTTCTTCAA+TGG 0.299034 3.1:+92461647 MS.gene68175:CDS
ACAGAAGTGGCGTGGGAATT+CGG 0.323001 3.1:+92460303 MS.gene68175:CDS
TTCTTTGAAGGACAACGTTC+GGG 0.326700 3.1:+92460259 MS.gene68175:CDS
CAGAAGTGGCGTGGGAATTC+GGG 0.333466 3.1:+92460304 MS.gene68175:CDS
TATATTAATGCGCCATTTGT+TGG 0.343277 3.1:+92463907 MS.gene68175:CDS
TTATCTTACATGGTTGGTTA+TGG 0.346424 3.1:+92463670 MS.gene68175:CDS
AAAGCGTTTCTGAGTTCATT+AGG 0.346536 3.1:-92460469 None:intergenic
ATATTAATGCGCCATTTGTT+GGG 0.347405 3.1:+92463908 MS.gene68175:CDS
CCCCTTGGGTTTATCTTACA+TGG 0.349502 3.1:+92463660 MS.gene68175:CDS
CCTAACCCAAATGTTCTTGT+AGG 0.353533 3.1:+92463805 MS.gene68175:CDS
GAGTAATGTCTCAGAATAAC+CGG 0.358072 3.1:-92461688 None:intergenic
CCATCAAAATCACAATAATA+AGG 0.363676 3.1:-92461795 None:intergenic
ATAGCTCCTACAAGAACATT+TGG 0.366293 3.1:-92463811 None:intergenic
TCTCCGGCGACATCGGAAGC+TGG 0.368714 3.1:-92461615 None:intergenic
TGACGTGCGAGATAAGTAAT+TGG 0.370872 3.1:-92463548 None:intergenic
TCGTGGAGTGTGATTGAGTT+TGG 0.383558 3.1:+92460433 MS.gene68175:CDS
AACAAACAACAACGATTTGC+TGG 0.392456 3.1:-92460155 None:intergenic
TTGTACAGGACGAATTGTTA+TGG 0.396581 3.1:+92462917 MS.gene68175:intron
CCTACAAGAACATTTGGGTT+AGG 0.401102 3.1:-92463805 None:intergenic
TATGGGGAGCCGCATGGTTA+AGG 0.403036 3.1:+92462935 MS.gene68175:CDS
GTTCTTTGAAGGACAACGTT+CGG 0.406507 3.1:+92460258 MS.gene68175:CDS
CAGAAGACATGGACACAAAC+AGG 0.408396 3.1:+92461565 MS.gene68175:CDS
TGTACAGGACGAATTGTTAT+GGG 0.417837 3.1:+92462918 MS.gene68175:intron
TCCCACGCCACTTCTGTCTC+TGG 0.419554 3.1:-92460297 None:intergenic
TGTTAGTGCACAAACACTTC+GGG 0.420044 3.1:+92463597 MS.gene68175:CDS
AAGTGCGGCGGCTGTTTCTC+CGG 0.426242 3.1:-92461631 None:intergenic
ACTTACAACACTGATCTTAC+CGG 0.429293 3.1:+92460343 MS.gene68175:CDS
GGGAATTCGGGTTTGAGTGA+TGG 0.430739 3.1:+92460316 MS.gene68175:CDS
CACTTCTGTCTCTGGTCCTC+TGG 0.435129 3.1:-92460289 None:intergenic
CTACTACTGGTGATGCTGAT+TGG 0.435595 3.1:+92460178 MS.gene68175:CDS
GTTGTTGTTTGTTCTACTAC+TGG 0.438724 3.1:+92460165 MS.gene68175:CDS
GGAATTCGGGTTTGAGTGAT+GGG 0.438904 3.1:+92460317 MS.gene68175:CDS
GCGACATCGGAAGCTGGGTT+AGG 0.440796 3.1:-92461609 None:intergenic
TTGTTATAGGAAGTCCTAGA+AGG 0.447365 3.1:+92463352 MS.gene68175:intron
GGCTGTTTCTCCGGCGACAT+CGG 0.450417 3.1:-92461622 None:intergenic
TTGGGTTTATCTTACATGGT+TGG 0.457905 3.1:+92463664 MS.gene68175:CDS
AATGTAATCAACTTGTCTCT+TGG 0.459625 3.1:-92463626 None:intergenic
CAGTGACAATGCTGATGTTA+AGG 0.460357 3.1:+92461761 MS.gene68175:CDS
ATTACTCAGAAATGCTGTTA+AGG 0.461567 3.1:+92461704 MS.gene68175:CDS
ACGCTTTGGTCGCAATTCGT+TGG 0.466420 3.1:+92460485 MS.gene68175:CDS
GGAGCTATTGTGGGAGGACC+TGG 0.473308 3.1:+92463826 MS.gene68175:CDS
ATGGTTAAGGAGGGCTACTC+AGG 0.477602 3.1:+92462948 MS.gene68175:CDS
TAGCTCCTACAAGAACATTT+GGG 0.479600 3.1:-92463810 None:intergenic
TTATACTTCCAAAATGGCAT+TGG 0.482936 3.1:+92460132 None:intergenic
TAATGAACTCAGAAACGCTT+TGG 0.483275 3.1:+92460471 MS.gene68175:CDS
AAGGCAATCATGTTCTTTGA+AGG 0.484150 3.1:+92460247 MS.gene68175:CDS
GAAGACAACATTAATGAGTT+CGG 0.484613 3.1:+92463021 MS.gene68175:CDS
TGAGGATGGTCCTTAATAGA+AGG 0.486620 3.1:-92463736 None:intergenic
TTCAATGGCATTCCGATCAT+CGG 0.487461 3.1:+92461662 MS.gene68175:CDS
CAACAGTTGTGGTCTGAGGT+TGG 0.488075 3.1:-92461534 None:intergenic
CTCCGGCGACATCGGAAGCT+GGG 0.490926 3.1:-92461614 None:intergenic
CCGGTGATAACATCAAATTT+GGG 0.494860 3.1:+92460380 MS.gene68175:CDS
ACAACATTAATGAGTTCGGT+TGG 0.496036 3.1:+92463025 MS.gene68175:CDS
TGTTGTAAGTTGCTTCCACC+TGG 0.503502 3.1:-92463490 None:intergenic
AACCTCAGACCACAACTGTT+GGG 0.503584 3.1:+92461536 MS.gene68175:CDS
CTCCCAACAGTTGTGGTCTG+AGG 0.506354 3.1:-92461538 None:intergenic
TGTTCTTGTAGGAGCTATTG+TGG 0.507021 3.1:+92463816 MS.gene68175:CDS
CCCAAATTTGATGTTATCAC+CGG 0.511014 3.1:-92460380 None:intergenic
TATGCTAAAACCCCAACAAA+TGG 0.511723 3.1:-92463919 None:intergenic
CAACCTCAGACCACAACTGT+TGG 0.514008 3.1:+92461535 MS.gene68175:CDS
TCCTCAACAGATTGCATGCA+AGG 0.516979 3.1:+92463753 MS.gene68175:CDS
CCTCAACGTTCTTGTCTCCA+AGG 0.518942 3.1:+92463065 MS.gene68175:CDS
ATGATGTTTATGTGGATGAC+AGG 0.521412 3.1:+92463854 MS.gene68175:CDS
CAACAGATTGCATGCAAGGA+AGG 0.522778 3.1:+92463757 MS.gene68175:CDS
CAACATTAATGAGTTCGGTT+GGG 0.522809 3.1:+92463026 MS.gene68175:CDS
CTGGCCTCTCCCAACAGTTG+TGG 0.526446 3.1:-92461545 None:intergenic
ATGTTAGTGCACAAACACTT+CGG 0.530340 3.1:+92463596 MS.gene68175:CDS
AAATGGCGCATTAATATATG+TGG 0.534377 3.1:-92463902 None:intergenic
CTAAACTACATTCAAAGCAA+TGG 0.537231 3.1:+92462982 MS.gene68175:CDS
TCCTTGCATGCAATCTGTTG+AGG 0.537233 3.1:-92463754 None:intergenic
GGGGAGCCGCATGGTTAAGG+AGG 0.537973 3.1:+92462938 MS.gene68175:CDS
CATCAAATTTGGGTTTCCGA+TGG 0.547688 3.1:+92460390 MS.gene68175:CDS
GACCAGAGACAGAAGTGGCG+TGG 0.550720 3.1:+92460295 MS.gene68175:CDS
AATAACCGGGATCCGATGAT+CGG 0.551697 3.1:-92461674 None:intergenic
GTTCTTGTAGGAGCTATTGT+GGG 0.555313 3.1:+92463817 MS.gene68175:CDS
TCAATATGCAGACAGTTACA+GGG 0.557642 3.1:+92461731 MS.gene68175:CDS
TCACACATCGAGTACACTCC+TGG 0.560468 3.1:+92463451 MS.gene68175:CDS
TTGGGAGAGGCCAGAAGACA+TGG 0.561765 3.1:+92461554 MS.gene68175:CDS
GGTTGGGACAACAAGCATGC+TGG 0.562101 3.1:+92463042 MS.gene68175:CDS
ATTGTTGTCGTAAACGCCAT+CGG 0.566271 3.1:-92460406 None:intergenic
ACATAAACATCATCTTCTCC+AGG 0.567710 3.1:-92463844 None:intergenic
TATTAATGCGCCATTTGTTG+GGG 0.570106 3.1:+92463909 MS.gene68175:CDS
ACCAGAGACAGAAGTGGCGT+GGG 0.571423 3.1:+92460296 MS.gene68175:CDS
CTACTGGTGATGCTGATTGG+AGG 0.572389 3.1:+92460181 MS.gene68175:CDS
ATTCGGGTTTGAGTGATGGG+TGG 0.574191 3.1:+92460320 MS.gene68175:CDS
CAAAGCAATGGTAAAACACT+CGG 0.575426 3.1:+92462994 MS.gene68175:CDS
ACCGGCGGTTACTACGACGC+CGG 0.576662 3.1:+92460361 MS.gene68175:CDS
AACCCAGCTTCCGATGTCGC+CGG 0.578286 3.1:+92461612 MS.gene68175:CDS
GGCGCATTAATATATGTGGT+TGG 0.580585 3.1:-92463898 None:intergenic
CTTGTAGGAGCTATTGTGGG+AGG 0.586975 3.1:+92463820 MS.gene68175:CDS
TGGAGAAGATGATGTTTATG+TGG 0.587154 3.1:+92463846 MS.gene68175:CDS
CATTGAAGAAGCAGCAAGTG+CGG 0.587315 3.1:-92461646 None:intergenic
GCATTCCGATCATCGGATCC+CGG 0.593312 3.1:+92461669 MS.gene68175:CDS
AATTGTTATGGGGAGCCGCA+TGG 0.602591 3.1:+92462929 MS.gene68175:CDS
GCATAGGAAGCTCTCTGCTG+AGG 0.604029 3.1:-92463404 None:intergenic
TGCATGCAATCTGTTGAGGA+TGG 0.606925 3.1:-92463750 None:intergenic
GGTCTGTATATGAGTCCACC+AGG 0.612971 3.1:-92463469 None:intergenic
TTTCAGGTAGTAGTGTGCAT+AGG 0.626912 3.1:-92463420 None:intergenic
TGAAGAAGCAGCAAGTGCGG+CGG 0.632124 3.1:-92461643 None:intergenic
GCGTTTCTGAGTTCATTAGG+AGG 0.634386 3.1:-92460466 None:intergenic
AACCATGTAAGATAAACCCA+AGG 0.635575 3.1:-92463662 None:intergenic
AATTGGCGTAGACTAACTCA+AGG 0.637923 3.1:-92463531 None:intergenic
CAGACCACAACTGTTGGGAG+AGG 0.640454 3.1:+92461541 MS.gene68175:CDS
CAGAGGACCAGAGACAGAAG+TGG 0.641335 3.1:+92460290 MS.gene68175:CDS
ACCATGTAAGATAAACCCAA+GGG 0.641726 3.1:-92463661 None:intergenic
ACGTCACAAACCATCAATTG+TGG 0.642957 3.1:+92463565 MS.gene68175:CDS
TACAACACTGATCTTACCGG+CGG 0.646779 3.1:+92460346 MS.gene68175:CDS
TTACGACAACAATGTTGTCG+TGG 0.652135 3.1:+92460416 MS.gene68175:CDS
GACAATGCTGATGTTAAGGA+TGG 0.656075 3.1:+92461765 MS.gene68175:CDS
ACCGGCGTCGTAGTAACCGC+CGG 0.660182 3.1:-92460362 None:intergenic
AGTAATGTCTCAGAATAACC+GGG 0.665758 3.1:-92461687 None:intergenic
GTACAGGACGAATTGTTATG+GGG 0.670217 3.1:+92462919 MS.gene68175:intron
TTATGCGGAGGCATTATCGA+AGG 0.671544 3.1:+92460228 MS.gene68175:CDS
CACATCGAGTACACTCCTGG+TGG 0.672404 3.1:+92463454 MS.gene68175:CDS
TCTTTGAAGGACAACGTTCG+GGG 0.677942 3.1:+92460260 MS.gene68175:CDS
GGTGGACTCATATACAGACC+AGG 0.680214 3.1:+92463472 MS.gene68175:CDS
GGGAGCCGCATGGTTAAGGA+GGG 0.683185 3.1:+92462939 MS.gene68175:CDS
CAATATGCAGACAGTTACAG+GGG 0.695263 3.1:+92461732 MS.gene68175:CDS
CCACGATGATGAATACGTTG+TGG 0.695422 3.1:-92463703 None:intergenic
TGTGAATGCACATGATTATG+CGG 0.701086 3.1:+92460213 MS.gene68175:CDS
GGACTCATATACAGACCAGG+TGG 0.718917 3.1:+92463475 MS.gene68175:CDS
CCTTGGAGACAAGAACGTTG+AGG 0.724038 3.1:-92463065 None:intergenic
CCACAACGTATTCATCATCG+TGG 0.724350 3.1:+92463703 MS.gene68175:CDS
TGATGTTTATGTGGATGACA+GGG 0.726322 3.1:+92463855 MS.gene68175:CDS
CCATGTAAGATAAACCCAAG+GGG 0.735452 3.1:-92463660 None:intergenic
AGTAGCCCTCCTTAACCATG+CGG 0.745611 3.1:-92462944 None:intergenic
GAATGCACATGATTATGCGG+AGG 0.747781 3.1:+92460216 MS.gene68175:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTAGATATATCAAAAAA+TGG + chr3.1:92461426-92461445 MS.gene68175:intron 10.0%
!! ATTAGTTAATTAATTAAAAG+TGG + chr3.1:92462591-92462610 MS.gene68175:intron 10.0%
!! ATTCTCATTAATTTAAAAAT+TGG - chr3.1:92461377-92461396 None:intergenic 10.0%
!! TTAATCAAAAAAGAAATTTA+CGG + chr3.1:92460748-92460767 MS.gene68175:intron 10.0%
!!! TAAATTTCTTTTTTGATTAA+GGG - chr3.1:92460748-92460767 None:intergenic 10.0%
!!! TTCTAATAATAAATACTTTT+TGG + chr3.1:92462186-92462205 MS.gene68175:intron 10.0%
!! AAATAAATAAATAAAGGAAG+AGG - chr3.1:92460683-92460702 None:intergenic 15.0%
!! TCATTAATTTAAAAATTGGA+TGG - chr3.1:92461373-92461392 None:intergenic 15.0%
!! TGTCATGTAATTTAATAATT+AGG - chr3.1:92461486-92461505 None:intergenic 15.0%
!!! AATTTGCTTATAAAAAGAAA+AGG + chr3.1:92461006-92461025 MS.gene68175:intron 15.0%
!!! AATTTGCTTATAAAAAGAAA+CGG - chr3.1:92461025-92461006 None:intergenic 15.0%
!!! GAATTTAGAATTATAAAAAC+AGG + chr3.1:92462225-92462244 MS.gene68175:intron 15.0%
!!! GTAAATTTCTTTTTTGATTA+AGG - chr3.1:92460749-92460768 None:intergenic 15.0%
!! AAAATTCAAAACGATAACAT+CGG - chr3.1:92461897-92461916 None:intergenic 20.0%
!! AAATTTGAATTGAATAGAGA+TGG - chr3.1:92463093-92463112 None:intergenic 20.0%
!! AACAAAAAAAAAACTGAAAG+CGG - chr3.1:92460856-92460875 None:intergenic 20.0%
!! CAATTAATTAATGATGTATG+TGG + chr3.1:92460942-92460961 MS.gene68175:intron 20.0%
!! CCTAAATCAATTTATTGAAA+TGG + chr3.1:92460775-92460794 MS.gene68175:intron 20.0%
!! GATAGATGCTATAATATAAT+AGG - chr3.1:92462446-92462465 None:intergenic 20.0%
!! GTATTCATTTCATATCATAT+GGG + chr3.1:92462116-92462135 MS.gene68175:intron 20.0%
!! TAAGGTTTGAAAAATATAAG+CGG + chr3.1:92462300-92462319 MS.gene68175:intron 20.0%
!! TATTAGAAATTGAGTGTAAA+AGG - chr3.1:92462174-92462193 None:intergenic 20.0%
!! TGTATTCATTTCATATCATA+TGG + chr3.1:92462115-92462134 MS.gene68175:intron 20.0%
!! TTGTTCACATTTAGAAATAT+AGG + chr3.1:92460871-92460890 MS.gene68175:intron 20.0%
!!! ACATTGATAATGATAGTATA+TGG + chr3.1:92461928-92461947 MS.gene68175:intron 20.0%
!!! AGTAAATGAATTGTTGTTAT+AGG + chr3.1:92463339-92463358 MS.gene68175:intron 20.0%
!!! ATTGCATTTTTCCTTTTTAT+AGG + chr3.1:92461868-92461887 MS.gene68175:intron 20.0%
!!! CCATTTCAATAAATTGATTT+AGG - chr3.1:92460778-92460797 None:intergenic 20.0%
!!! TCAAAATCATCATTTTTCTT+AGG - chr3.1:92461074-92461093 None:intergenic 20.0%
! AAATAAATAAAGGAAGAGGA+AGG - chr3.1:92460679-92460698 None:intergenic 25.0%
! CAATCAACATCGAATTATAT+AGG + chr3.1:92462722-92462741 MS.gene68175:intron 25.0%
! CATTCAATTAATGATGTATG+TGG - chr3.1:92460973-92460992 None:intergenic 25.0%
! CCATCAAAATCACAATAATA+AGG - chr3.1:92461798-92461817 None:intergenic 25.0%
! GATCGTAAATGTAAATAAAC+TGG - chr3.1:92460834-92460853 None:intergenic 25.0%
! GTATACAGTTATAATCGAAA+CGG - chr3.1:92461317-92461336 None:intergenic 25.0%
! TATTACTAGTACTATGTGAA+GGG + chr3.1:92462785-92462804 MS.gene68175:intron 25.0%
! TGCTTATAAAAAGAAAAGGA+GGG + chr3.1:92461010-92461029 MS.gene68175:intron 25.0%
! TGTAGTGATGACAAAAATAA+AGG - chr3.1:92461103-92461122 None:intergenic 25.0%
! TTATTACTAGTACTATGTGA+AGG + chr3.1:92462784-92462803 MS.gene68175:intron 25.0%
! TTGCTTATAAAAAGAAAAGG+AGG + chr3.1:92461009-92461028 MS.gene68175:intron 25.0%
!! CCTTATTATTGTGATTTTGA+TGG + chr3.1:92461795-92461814 MS.gene68175:CDS 25.0%
!! CTATTTGCTACACTATTAAT+TGG + chr3.1:92462879-92462898 MS.gene68175:intron 25.0%
!!! AAATGGTTGATGACAAAATT+TGG + chr3.1:92461443-92461462 MS.gene68175:intron 25.0%
!!! AGACAAGTTGATTACATTTT+AGG + chr3.1:92463631-92463650 MS.gene68175:CDS 25.0%
!!! TATTTTTGTCATCACTACAA+AGG + chr3.1:92461104-92461123 MS.gene68175:intron 25.0%
AAATGGCGCATTAATATATG+TGG - chr3.1:92463905-92463924 None:intergenic 30.0%
AACATCGGATACCTATAAAA+AGG - chr3.1:92461882-92461901 None:intergenic 30.0%
AACTATACTACTTACTAACC+TGG - chr3.1:92461824-92461843 None:intergenic 30.0%
AATGTAATCAACTTGTCTCT+TGG - chr3.1:92463629-92463648 None:intergenic 30.0%
ACAACAAAGCTTCTGTAAAA+CGG - chr3.1:92462386-92462405 None:intergenic 30.0%
ACAATTTACTACTGAATCGT+TGG + chr3.1:92460564-92460583 MS.gene68175:intron 30.0%
ACATTGTACATGCTACTATT+AGG + chr3.1:92461503-92461522 MS.gene68175:intron 30.0%
AGTTATAATCGAAACGGAAA+TGG - chr3.1:92461311-92461330 None:intergenic 30.0%
ATAAACATTGCCACAATTGA+TGG - chr3.1:92463578-92463597 None:intergenic 30.0%
ATATTAATGCGCCATTTGTT+GGG + chr3.1:92463908-92463927 MS.gene68175:CDS 30.0%
ATTACTAGTACTATGTGAAG+GGG + chr3.1:92462786-92462805 MS.gene68175:intron 30.0%
ATTACTCAGAAATGCTGTTA+AGG + chr3.1:92461704-92461723 MS.gene68175:CDS 30.0%
ATTGTACCTGAACAAAAATG+CGG - chr3.1:92460549-92460568 None:intergenic 30.0%
CAATTAATGATGTATGTGGT+AGG - chr3.1:92460969-92460988 None:intergenic 30.0%
CAATTTACTACTGAATCGTT+GGG + chr3.1:92460565-92460584 MS.gene68175:intron 30.0%
CTAAACTACATTCAAAGCAA+TGG + chr3.1:92462982-92463001 MS.gene68175:CDS 30.0%
GAAGACAACATTAATGAGTT+CGG + chr3.1:92463021-92463040 MS.gene68175:CDS 30.0%
GTTTGAAAAATATAAGCGGT+GGG + chr3.1:92462304-92462323 MS.gene68175:intron 30.0%
TAGAAATTGAGTGTAAAAGG+TGG - chr3.1:92462171-92462190 None:intergenic 30.0%
TATATTAATGCGCCATTTGT+TGG + chr3.1:92463907-92463926 MS.gene68175:CDS 30.0%
TGCTACACTATTAATTGGTT+TGG + chr3.1:92462884-92462903 MS.gene68175:intron 30.0%
TTGCTTATAAAAAGAAACGG+AGG - chr3.1:92460902-92460921 None:intergenic 30.0%
TTGGATACATTACATTGTAC+AGG + chr3.1:92462903-92462922 MS.gene68175:intron 30.0%
! AATTGCATCTCGAGAATTTT+TGG + chr3.1:92462668-92462687 MS.gene68175:intron 30.0%
! ACAAGTGATTTTGCGAAATA+AGG + chr3.1:92462282-92462301 MS.gene68175:intron 30.0%
! ATTTCATATCATATGGGCTA+TGG + chr3.1:92462122-92462141 MS.gene68175:intron 30.0%
! CATTGCTTTGAATGTAGTTT+AGG - chr3.1:92462984-92463003 None:intergenic 30.0%
! TTATCTTACATGGTTGGTTA+TGG + chr3.1:92463670-92463689 MS.gene68175:CDS 30.0%
!! AAATTTTCCGTGTCATTATG+TGG + chr3.1:92461189-92461208 MS.gene68175:intron 30.0%
!!! TTTGGAATTTTTTGCCAGTT+AGG + chr3.1:92462327-92462346 MS.gene68175:intron 30.0%
AAATCCGAAGCAAACTATTG+TGG + chr3.1:92462043-92462062 MS.gene68175:intron 35.0%
AACAAACAACAACGATTTGC+TGG - chr3.1:92460158-92460177 None:intergenic 35.0%
AACCATGTAAGATAAACCCA+AGG - chr3.1:92463665-92463684 None:intergenic 35.0%
AAGGCAATCATGTTCTTTGA+AGG + chr3.1:92460247-92460266 MS.gene68175:CDS 35.0%
AAGGGGTAATATTTGTCTGA+GGG + chr3.1:92462803-92462822 MS.gene68175:intron 35.0%
ACAACATTAATGAGTTCGGT+TGG + chr3.1:92463025-92463044 MS.gene68175:CDS 35.0%
ACATAAACATCATCTTCTCC+AGG - chr3.1:92463847-92463866 None:intergenic 35.0%
ACCATGTAAGATAAACCCAA+GGG - chr3.1:92463664-92463683 None:intergenic 35.0%
ACTTACAACACTGATCTTAC+CGG + chr3.1:92460343-92460362 MS.gene68175:CDS 35.0%
AGTAATGTCTCAGAATAACC+GGG - chr3.1:92461690-92461709 None:intergenic 35.0%
ATAGCTCCTACAAGAACATT+TGG - chr3.1:92463814-92463833 None:intergenic 35.0%
ATGATGTTTATGTGGATGAC+AGG + chr3.1:92463854-92463873 MS.gene68175:CDS 35.0%
ATGTGTGAACTTGATGTTTC+AGG - chr3.1:92463439-92463458 None:intergenic 35.0%
ATGTTAGTGCACAAACACTT+CGG + chr3.1:92463596-92463615 MS.gene68175:CDS 35.0%
ATTGAATAGAGATGGAACCT+TGG - chr3.1:92463085-92463104 None:intergenic 35.0%
CAAAGCAATGGTAAAACACT+CGG + chr3.1:92462994-92463013 MS.gene68175:CDS 35.0%
CAACATTAATGAGTTCGGTT+GGG + chr3.1:92463026-92463045 MS.gene68175:CDS 35.0%
CCCAAATTTGATGTTATCAC+CGG - chr3.1:92460383-92460402 None:intergenic 35.0%
CCGGTGATAACATCAAATTT+GGG + chr3.1:92460380-92460399 MS.gene68175:CDS 35.0%
CTCATCTCTACCTTCTATTA+AGG + chr3.1:92463726-92463745 MS.gene68175:CDS 35.0%
GAGATTCAACATTTCCTTCT+AGG - chr3.1:92463369-92463388 None:intergenic 35.0%
GAGTAATGTCTCAGAATAAC+CGG - chr3.1:92461691-92461710 None:intergenic 35.0%
GGTTTGAAAAATATAAGCGG+TGG + chr3.1:92462303-92462322 MS.gene68175:intron 35.0%
GTAACACTTCCATTATGTGT+CGG - chr3.1:92462645-92462664 None:intergenic 35.0%
TAACACTTCCATTATGTGTC+GGG - chr3.1:92462644-92462663 None:intergenic 35.0%
TAATGAACTCAGAAACGCTT+TGG + chr3.1:92460471-92460490 MS.gene68175:CDS 35.0%
TAGCTCCTACAAGAACATTT+GGG - chr3.1:92463813-92463832 None:intergenic 35.0%
TATGCTAAAACCCCAACAAA+TGG - chr3.1:92463922-92463941 None:intergenic 35.0%
TCAATATGCAGACAGTTACA+GGG + chr3.1:92461731-92461750 MS.gene68175:CDS 35.0%
TGATGTTTATGTGGATGACA+GGG + chr3.1:92463855-92463874 MS.gene68175:CDS 35.0%
TGGAGAAGATGATGTTTATG+TGG + chr3.1:92463846-92463865 MS.gene68175:CDS 35.0%
TGTACAGGACGAATTGTTAT+GGG + chr3.1:92462918-92462937 MS.gene68175:intron 35.0%
TGTACATGCTACTATTAGGT+GGG + chr3.1:92461507-92461526 MS.gene68175:intron 35.0%
TGTGAATGCACATGATTATG+CGG + chr3.1:92460213-92460232 MS.gene68175:CDS 35.0%
TTCAATATGCAGACAGTTAC+AGG + chr3.1:92461730-92461749 MS.gene68175:CDS 35.0%
TTCTTAGGAACGACTAAACA+TGG - chr3.1:92461059-92461078 None:intergenic 35.0%
TTGAAGTCCGTGAATTTCAT+CGG + chr3.1:92461236-92461255 MS.gene68175:intron 35.0%
TTGGGTTTATCTTACATGGT+TGG + chr3.1:92463664-92463683 MS.gene68175:CDS 35.0%
TTGTACAGGACGAATTGTTA+TGG + chr3.1:92462917-92462936 MS.gene68175:intron 35.0%
TTGTACATGCTACTATTAGG+TGG + chr3.1:92461506-92461525 MS.gene68175:intron 35.0%
TTGTTATAGGAAGTCCTAGA+AGG + chr3.1:92463352-92463371 MS.gene68175:intron 35.0%
! AAAAATATAAGCGGTGGGTT+TGG + chr3.1:92462309-92462328 MS.gene68175:intron 35.0%
! AAAGCGTTTCTGAGTTCATT+AGG - chr3.1:92460472-92460491 None:intergenic 35.0%
! TATTAATGCGCCATTTGTTG+GGG + chr3.1:92463909-92463928 MS.gene68175:CDS 35.0%
!! ATTTTAGGTGATAACCCCTT+GGG + chr3.1:92463646-92463665 MS.gene68175:CDS 35.0%
!! GTTGTTGTTTGTTCTACTAC+TGG + chr3.1:92460165-92460184 MS.gene68175:CDS 35.0%
!! TTGTGATTTTGATGGATACC+AGG + chr3.1:92461803-92461822 MS.gene68175:CDS 35.0%
!! TTTGCCACAATAGTTTGCTT+CGG - chr3.1:92462050-92462069 None:intergenic 35.0%
AATTGGCGTAGACTAACTCA+AGG - chr3.1:92463534-92463553 None:intergenic 40.0%
ACGTCACAAACCATCAATTG+TGG + chr3.1:92463565-92463584 MS.gene68175:CDS 40.0%
AGGGCAATTCGTGTATTTAG+TGG + chr3.1:92462822-92462841 MS.gene68175:intron 40.0%
ATAAACTGGCACAGCTATCA+AGG - chr3.1:92460820-92460839 None:intergenic 40.0%
ATGAGTAACACTGCCATGTT+TGG - chr3.1:92461347-92461366 None:intergenic 40.0%
ATTGTTGTCGTAAACGCCAT+CGG - chr3.1:92460409-92460428 None:intergenic 40.0%
CAATATGCAGACAGTTACAG+GGG + chr3.1:92461732-92461751 MS.gene68175:CDS 40.0%
CAGTGACAATGCTGATGTTA+AGG + chr3.1:92461761-92461780 MS.gene68175:CDS 40.0%
CCATGTAAGATAAACCCAAG+GGG - chr3.1:92463663-92463682 None:intergenic 40.0%
CCTAACCCAAATGTTCTTGT+AGG + chr3.1:92463805-92463824 MS.gene68175:CDS 40.0%
GAAGGGGTAATATTTGTCTG+AGG + chr3.1:92462802-92462821 MS.gene68175:intron 40.0%
GACAATGCTGATGTTAAGGA+TGG + chr3.1:92461765-92461784 MS.gene68175:CDS 40.0%
GATGAAATTCACGGACTTCA+AGG - chr3.1:92461237-92461256 None:intergenic 40.0%
GCCGGTGATAACATCAAATT+TGG + chr3.1:92460379-92460398 MS.gene68175:CDS 40.0%
GGCGCATTAATATATGTGGT+TGG - chr3.1:92463901-92463920 None:intergenic 40.0%
GTACAGGACGAATTGTTATG+GGG + chr3.1:92462919-92462938 MS.gene68175:intron 40.0%
GTTCTTGTAGGAGCTATTGT+GGG + chr3.1:92463817-92463836 MS.gene68175:CDS 40.0%
TGACGTGCGAGATAAGTAAT+TGG - chr3.1:92463551-92463570 None:intergenic 40.0%
TGAGGATGGTCCTTAATAGA+AGG - chr3.1:92463739-92463758 None:intergenic 40.0%
TGAGTGTAAAAGGTGGATGT+GGG - chr3.1:92462164-92462183 None:intergenic 40.0%
TGCAAAGCCGATGAAATTCA+CGG - chr3.1:92461246-92461265 None:intergenic 40.0%
TGTTAGTGCACAAACACTTC+GGG + chr3.1:92463597-92463616 MS.gene68175:CDS 40.0%
TGTTCTTGTAGGAGCTATTG+TGG + chr3.1:92463816-92463835 MS.gene68175:CDS 40.0%
TTACGACAACAATGTTGTCG+TGG + chr3.1:92460416-92460435 MS.gene68175:CDS 40.0%
TTCAATGGCATTCCGATCAT+CGG + chr3.1:92461662-92461681 MS.gene68175:CDS 40.0%
TTGAGTGTAAAAGGTGGATG+TGG - chr3.1:92462165-92462184 None:intergenic 40.0%
! ATATCATATGGGCTATGGCA+TGG + chr3.1:92462127-92462146 MS.gene68175:intron 40.0%
! CATCAAATTTGGGTTTCCGA+TGG + chr3.1:92460390-92460409 MS.gene68175:CDS 40.0%
! CCTACAAGAACATTTGGGTT+AGG - chr3.1:92463808-92463827 None:intergenic 40.0%
! GTCTAACCGCATTTTTGTTC+AGG + chr3.1:92460540-92460559 MS.gene68175:CDS 40.0%
! GTTCTTTGAAGGACAACGTT+CGG + chr3.1:92460258-92460277 MS.gene68175:CDS 40.0%
! TAGAGTGTTTGATCACGTGA+AGG - chr3.1:92461971-92461990 None:intergenic 40.0%
! TATCATATGGGCTATGGCAT+GGG + chr3.1:92462128-92462147 MS.gene68175:intron 40.0%
! TTCTTTGAAGGACAACGTTC+GGG + chr3.1:92460259-92460278 MS.gene68175:CDS 40.0%
! TTTCAGGTAGTAGTGTGCAT+AGG - chr3.1:92463423-92463442 None:intergenic 40.0%
! TTTTGCCAGTTAGGACATGT+CGG + chr3.1:92462336-92462355 MS.gene68175:intron 40.0%
!! CATTTTAGGTGATAACCCCT+TGG + chr3.1:92463645-92463664 MS.gene68175:CDS 40.0%
AACCTCAGACCACAACTGTT+GGG + chr3.1:92461536-92461555 MS.gene68175:CDS 45.0%
AATAACCGGGATCCGATGAT+CGG - chr3.1:92461677-92461696 None:intergenic 45.0%
CAACAGATTGCATGCAAGGA+AGG + chr3.1:92463757-92463776 MS.gene68175:CDS 45.0%
CAGAAGACATGGACACAAAC+AGG + chr3.1:92461565-92461584 MS.gene68175:CDS 45.0%
CATTGAAGAAGCAGCAAGTG+CGG - chr3.1:92461649-92461668 None:intergenic 45.0%
CCACAACGTATTCATCATCG+TGG + chr3.1:92463703-92463722 MS.gene68175:CDS 45.0%
CCACGATGATGAATACGTTG+TGG - chr3.1:92463706-92463725 None:intergenic 45.0%
CCCCTTGGGTTTATCTTACA+TGG + chr3.1:92463660-92463679 MS.gene68175:CDS 45.0%
CTCCAGTCCACATAATGACA+CGG - chr3.1:92461199-92461218 None:intergenic 45.0%
CTGTTTGTGTCCATGTCTTC+TGG - chr3.1:92461567-92461586 None:intergenic 45.0%
GAATGCACATGATTATGCGG+AGG + chr3.1:92460216-92460235 MS.gene68175:CDS 45.0%
GCGTTTCTGAGTTCATTAGG+AGG - chr3.1:92460469-92460488 None:intergenic 45.0%
GTTAGGACATGTCGGTGTAA+TGG + chr3.1:92462344-92462363 MS.gene68175:intron 45.0%
TACAACACTGATCTTACCGG+CGG + chr3.1:92460346-92460365 MS.gene68175:CDS 45.0%
TATCAAGGAAGAACGCACGA+TGG - chr3.1:92460805-92460824 None:intergenic 45.0%
TCCTCAACAGATTGCATGCA+AGG + chr3.1:92463753-92463772 MS.gene68175:CDS 45.0%
TCCTTGCATGCAATCTGTTG+AGG - chr3.1:92463757-92463776 None:intergenic 45.0%
TCGTGGAGTGTGATTGAGTT+TGG + chr3.1:92460433-92460452 MS.gene68175:CDS 45.0%
TGCATGCAATCTGTTGAGGA+TGG - chr3.1:92463753-92463772 None:intergenic 45.0%
TGTTGTAAGTTGCTTCCACC+TGG - chr3.1:92463493-92463512 None:intergenic 45.0%
TTACACCGACATGTCCTAAC+TGG - chr3.1:92462344-92462363 None:intergenic 45.0%
! CTACTACTGGTGATGCTGAT+TGG + chr3.1:92460178-92460197 MS.gene68175:CDS 45.0%
! GGAATTCGGGTTTGAGTGAT+GGG + chr3.1:92460317-92460336 MS.gene68175:CDS 45.0%
! TCTTTGAAGGACAACGTTCG+GGG + chr3.1:92460260-92460279 MS.gene68175:CDS 45.0%
! TTCCGTGTCATTATGTGGAC+TGG + chr3.1:92461194-92461213 MS.gene68175:intron 45.0%
!! TGTCATTATGTGGACTGGAG+TGG + chr3.1:92461199-92461218 MS.gene68175:intron 45.0%
!! TTATGCGGAGGCATTATCGA+AGG + chr3.1:92460228-92460247 MS.gene68175:CDS 45.0%
!! TGTAATAAATAAATAAATAA+AGG - chr3.1:92460689-92460708 None:intergenic 5.0%
!!! TTTATTTATTTATTACATTT+TGG + chr3.1:92460692-92460711 MS.gene68175:intron 5.0%
AAAAAACAATTCGCCCCCCG+TGG + chr3.1:92463177-92463196 MS.gene68175:intron 50.0%
AAAAACAATTCGCCCCCCGT+GGG + chr3.1:92463178-92463197 MS.gene68175:intron 50.0%
AATTGTTATGGGGAGCCGCA+TGG + chr3.1:92462929-92462948 MS.gene68175:CDS 50.0%
ACAGAAGTGGCGTGGGAATT+CGG + chr3.1:92460303-92460322 MS.gene68175:CDS 50.0%
ACGCTTTGGTCGCAATTCGT+TGG + chr3.1:92460485-92460504 MS.gene68175:CDS 50.0%
AGGAAGAGGAAGGAGTGAGT+AGG - chr3.1:92460669-92460688 None:intergenic 50.0%
AGTAGCCCTCCTTAACCATG+CGG - chr3.1:92462947-92462966 None:intergenic 50.0%
ATGGTTAAGGAGGGCTACTC+AGG + chr3.1:92462948-92462967 MS.gene68175:CDS 50.0%
CAACCTCAGACCACAACTGT+TGG + chr3.1:92461535-92461554 MS.gene68175:CDS 50.0%
CACGTGATCCCGACACATAA+TGG + chr3.1:92462633-92462652 MS.gene68175:intron 50.0%
CCTCAACGTTCTTGTCTCCA+AGG + chr3.1:92463065-92463084 MS.gene68175:CDS 50.0%
CCTTGGAGACAAGAACGTTG+AGG - chr3.1:92463068-92463087 None:intergenic 50.0%
CGGACTTCAAGGATACGAAC+TGG - chr3.1:92461226-92461245 None:intergenic 50.0%
CTCTACCAACTGAGCTAGAC+GGG + chr3.1:92463237-92463256 MS.gene68175:intron 50.0%
CTTGTAGGAGCTATTGTGGG+AGG + chr3.1:92463820-92463839 MS.gene68175:CDS 50.0%
GAGTGAGTGAGTGAGAGAAG+TGG - chr3.1:92460631-92460650 None:intergenic 50.0%
GCTCTACCAACTGAGCTAGA+CGG + chr3.1:92463236-92463255 MS.gene68175:intron 50.0%
GCTCTTAACCTTGTGGTCGT+GGG - chr3.1:92463211-92463230 None:intergenic 50.0%
GGACTCATATACAGACCAGG+TGG + chr3.1:92463475-92463494 MS.gene68175:CDS 50.0%
GGTCTGTATATGAGTCCACC+AGG - chr3.1:92463472-92463491 None:intergenic 50.0%
TCACACATCGAGTACACTCC+TGG + chr3.1:92463451-92463470 MS.gene68175:CDS 50.0%
TTGACTCACTCACTCACGGA+CGG + chr3.1:92460588-92460607 MS.gene68175:intron 50.0%
! ACGTTCGGGGTTTTTACCAG+AGG + chr3.1:92460273-92460292 MS.gene68175:CDS 50.0%
! ATTCGGGTTTGAGTGATGGG+TGG + chr3.1:92460320-92460339 MS.gene68175:CDS 50.0%
! CAACAGTTGTGGTCTGAGGT+TGG - chr3.1:92461537-92461556 None:intergenic 50.0%
! CGCACTTGCTGCTTCTTCAA+TGG + chr3.1:92461647-92461666 MS.gene68175:CDS 50.0%
! CTACTGGTGATGCTGATTGG+AGG + chr3.1:92460181-92460200 MS.gene68175:CDS 50.0%
! GGGAATTCGGGTTTGAGTGA+TGG + chr3.1:92460316-92460335 MS.gene68175:CDS 50.0%
! GGTGGACTCATATACAGACC+AGG + chr3.1:92463472-92463491 MS.gene68175:CDS 50.0%
! TGGGTTGACTCACTCACTCA+CGG + chr3.1:92460584-92460603 MS.gene68175:intron 50.0%
AAAACAATTCGCCCCCCGTG+GGG + chr3.1:92463179-92463198 MS.gene68175:intron 55.0%
ACCAGAGACAGAAGTGGCGT+GGG + chr3.1:92460296-92460315 MS.gene68175:CDS 55.0%
CACATCGAGTACACTCCTGG+TGG + chr3.1:92463454-92463473 MS.gene68175:CDS 55.0%
CACTTCTGTCTCTGGTCCTC+TGG - chr3.1:92460292-92460311 None:intergenic 55.0%
CAGAAGTGGCGTGGGAATTC+GGG + chr3.1:92460304-92460323 MS.gene68175:CDS 55.0%
CAGACCACAACTGTTGGGAG+AGG + chr3.1:92461541-92461560 MS.gene68175:CDS 55.0%
CAGAGGACCAGAGACAGAAG+TGG + chr3.1:92460290-92460309 MS.gene68175:CDS 55.0%
CTCCCAACAGTTGTGGTCTG+AGG - chr3.1:92461541-92461560 None:intergenic 55.0%
GCATAGGAAGCTCTCTGCTG+AGG - chr3.1:92463407-92463426 None:intergenic 55.0%
GCATTCCGATCATCGGATCC+CGG + chr3.1:92461669-92461688 MS.gene68175:CDS 55.0%
GCGCAAGGCTCTTAACCTTG+TGG - chr3.1:92463218-92463237 None:intergenic 55.0%
GGCTCTTAACCTTGTGGTCG+TGG - chr3.1:92463212-92463231 None:intergenic 55.0%
GGTTGGGACAACAAGCATGC+TGG + chr3.1:92463042-92463061 MS.gene68175:CDS 55.0%
GTATACCCACGCGCCAAACA+TGG + chr3.1:92461331-92461350 MS.gene68175:intron 55.0%
TATGGGGAGCCGCATGGTTA+AGG + chr3.1:92462935-92462954 MS.gene68175:CDS 55.0%
TGAAGAAGCAGCAAGTGCGG+CGG - chr3.1:92461646-92461665 None:intergenic 55.0%
TTGGGAGAGGCCAGAAGACA+TGG + chr3.1:92461554-92461573 MS.gene68175:CDS 55.0%
! AACAGCCCGTCTAGCTCAGT+TGG - chr3.1:92463245-92463264 None:intergenic 55.0%
!! AGCTCAGTTGGTAGAGCGCA+AGG - chr3.1:92463233-92463252 None:intergenic 55.0%
AACCCAGCTTCCGATGTCGC+CGG + chr3.1:92461612-92461631 MS.gene68175:CDS 60.0%
ACACTGCCATGTTTGGCGCG+TGG - chr3.1:92461340-92461359 None:intergenic 60.0%
CACTGCCATGTTTGGCGCGT+GGG - chr3.1:92461339-92461358 None:intergenic 60.0%
CTGGCCTCTCCCAACAGTTG+TGG - chr3.1:92461548-92461567 None:intergenic 60.0%
GACCAGAGACAGAAGTGGCG+TGG + chr3.1:92460295-92460314 MS.gene68175:CDS 60.0%
GCGACATCGGAAGCTGGGTT+AGG - chr3.1:92461612-92461631 None:intergenic 60.0%
GGAGCTATTGTGGGAGGACC+TGG + chr3.1:92463826-92463845 MS.gene68175:CDS 60.0%
GGGAGCCGCATGGTTAAGGA+GGG + chr3.1:92462939-92462958 MS.gene68175:CDS 60.0%
TCCCACGCCACTTCTGTCTC+TGG - chr3.1:92460300-92460319 None:intergenic 60.0%
!! AAGTGCGGCGGCTGTTTCTC+CGG - chr3.1:92461634-92461653 None:intergenic 60.0%
!! GGCTGTTTCTCCGGCGACAT+CGG - chr3.1:92461625-92461644 None:intergenic 60.0%
ACCGGCGGTTACTACGACGC+CGG + chr3.1:92460361-92460380 MS.gene68175:CDS 65.0%
ACCGGCGTCGTAGTAACCGC+CGG - chr3.1:92460365-92460384 None:intergenic 65.0%
CTCCGGCGACATCGGAAGCT+GGG - chr3.1:92461617-92461636 None:intergenic 65.0%
GGCTCGAACCCACGACCACA+AGG + chr3.1:92463200-92463219 MS.gene68175:intron 65.0%
GGGGAGCCGCATGGTTAAGG+AGG + chr3.1:92462938-92462957 MS.gene68175:CDS 65.0%
TCTCCGGCGACATCGGAAGC+TGG - chr3.1:92461618-92461637 None:intergenic 65.0%
GGTCGTGGGTTCGAGCCCCA+CGG - chr3.1:92463197-92463216 None:intergenic 70.0%
GTCGTGGGTTCGAGCCCCAC+GGG - chr3.1:92463196-92463215 None:intergenic 70.0%
TCGTGGGTTCGAGCCCCACG+GGG - chr3.1:92463195-92463214 None:intergenic 70.0%
CGTGGGTTCGAGCCCCACGG+GGG - chr3.1:92463194-92463213 None:intergenic 75.0%
GTGGGTTCGAGCCCCACGGG+GGG - chr3.1:92463193-92463212 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 92460145 92463957 92460145 ID=MS.gene68175
chr3.1 mRNA 92460145 92463957 92460145 ID=MS.gene68175.t1;Parent=MS.gene68175
chr3.1 exon 92460145 92460561 92460145 ID=MS.gene68175.t1.exon1;Parent=MS.gene68175.t1
chr3.1 CDS 92460145 92460561 92460145 ID=cds.MS.gene68175.t1;Parent=MS.gene68175.t1
chr3.1 exon 92461525 92461824 92461525 ID=MS.gene68175.t1.exon2;Parent=MS.gene68175.t1
chr3.1 CDS 92461525 92461824 92461525 ID=cds.MS.gene68175.t1;Parent=MS.gene68175.t1
chr3.1 exon 92462925 92463086 92462925 ID=MS.gene68175.t1.exon3;Parent=MS.gene68175.t1
chr3.1 CDS 92462925 92463086 92462925 ID=cds.MS.gene68175.t1;Parent=MS.gene68175.t1
chr3.1 exon 92463361 92463957 92463361 ID=MS.gene68175.t1.exon4;Parent=MS.gene68175.t1
chr3.1 CDS 92463361 92463957 92463361 ID=cds.MS.gene68175.t1;Parent=MS.gene68175.t1
Gene Sequence

>MS.gene68175

ATGGCATTGGCCAGCAAATCGTTGTTGTTTGTTCTACTACTGGTGATGCTGATTGGAGGAAGAAGAAGTGTGAATGCACATGATTATGCGGAGGCATTATCGAAGGCAATCATGTTCTTTGAAGGACAACGTTCGGGGTTTTTACCAGAGGACCAGAGACAGAAGTGGCGTGGGAATTCGGGTTTGAGTGATGGGTGGACTTACAACACTGATCTTACCGGCGGTTACTACGACGCCGGTGATAACATCAAATTTGGGTTTCCGATGGCGTTTACGACAACAATGTTGTCGTGGAGTGTGATTGAGTTTGGTGAAAACATGCCTCCTAATGAACTCAGAAACGCTTTGGTCGCAATTCGTTGGAGTACTGATTATTTGCTTAAGACTGTTTCTCAGTCTAACCGCATTTTTGTTCAGGTACAATTTACTACTGAATCGTTGGGTTGACTCACTCACTCACGGACGGTTACATTACACTTTTCACCACTTCTCTCACTCACTCACTCACTCACTCACACGCACCTACTCACTCCTTCCTCTTCCTTTATTTATTTATTTATTACATTTTGGATGCATAATTAGTTTATGTATTTTTTTCATCCCTTAATCAAAAAAGAAATTTACGGTATTCCTAAATCAATTTATTGAAATGGAAAACCATCGTGCGTTCTTCCTTGATAGCTGTGCCAGTTTATTTACATTTACGATCCGCTTTCAGTTTTTTTTTTGTTCACATTTAGAAATATAGGTACTTCCTCCGTTTCTTTTTATAAGCAAATTTAATTTTTAGATTCATTCAATTAATTAATGATGTATGTGGTCCTACCACATACATCATTAATTGAATGAATCTAAAAATTAAATTTGCTTATAAAAAGAAAAGGAGGGAGTAGTAATTTTAGTCATCACTACCATGTTTAGTCGTTCCTAAGAAAAATGATGATTTTGACATTTGCCTTTATTTTTGTCATCACTACAAAGGTTTATGTAAAATACTAATTTGATTTTATTACTACTAAAAAATAAAAGTGCATTTTTAACACAAAATTTTCCGTGTCATTATGTGGACTGGAGTGGACCAGTTCGTATCCTTGAAGTCCGTGAATTTCATCGGCTTTGCATTGCAACTGTCTTCTAAATAAATGCAATATTTCGTTACTTTACCATTTCCGTTTCGATTATAACTGTATACCCACGCGCCAAACATGGCAGTGTTACTCATCTTCCATCCAATTTTTAAATTAATGAGAATTCTTTTCACTTTTGTTTAATCTCAAATTTATATTAGATATATCAAAAAATGGTTGATGACAAAATTTGGATGTGTCTAAATGTTCACCTAATTATTAAATTACATGACATTGTACATGCTACTATTAGGTGGGTGAACCAACCTCAGACCACAACTGTTGGGAGAGGCCAGAAGACATGGACACAAACAGGAAAGTGTATGCTGTTGATGCACCTAACCCAGCTTCCGATGTCGCCGGAGAAACAGCCGCCGCACTTGCTGCTTCTTCAATGGCATTCCGATCATCGGATCCCGGTTATTCTGAGACATTACTCAGAAATGCTGTTAAGGCATTTCAATATGCAGACAGTTACAGGGGCGCATACAGTGACAATGCTGATGTTAAGGATGGTGTCTGTCCTTATTATTGTGATTTTGATGGATACCAGGTTAGTAAGTAGTATAGTTGACTCTTCTTTTCAATTACTATGTATTGCATTTTTCCTTTTTATAGGTATCCGATGTTATCGTTTTGAATTTTCTATTAATAAGACATTGATAATGATAGTATATGGACAATGATATTGCATTGCCTTCACGTGATCAAACACTCTAACTAATTGCTTTAAATTAGTAGATGAACAAATCAATAAGCAAAAGATAATTAAAATCCGAAGCAAACTATTGTGGCAAAATTGAATTATTATAGTACTATACTATGTTAGTTTGTTGCTTTATATGTATTCATTTCATATCATATGGGCTATGGCATGGGAAGTTATTTTCCCACATCCACCTTTTACACTCAATTTCTAATAATAAATACTTTTTGGTTTTATTTCTAATTATGAATTTAGAATTATAAAAACAGGAATTAGAGATAAAGTATAAATAAATGAGAATAAAACAAGTGATTTTGCGAAATAAGGTTTGAAAAATATAAGCGGTGGGTTTGGAATTTTTTGCCAGTTAGGACATGTCGGTGTAATGGATGAAATAACGATGCACCGTTTTACAGAAGCTTTGTTGTTTTTGTCAAAATTACTGTAATTTCATTAAAACAATTTCCTATTATATTATAGCATCTATCTATATATAACTCGTGAACATTTAGCTTATTTTGCGTTTTGTCGCATTGTAGTGTATAGATGATATAAATTGACGATCGATGACAACTCTGTCTCTAACTGACAATTTGTTTAAGTGAGTGAATGAATTAGTTAATTAATTAAAAGTGGAGTAATTCACTAATTCATTCACGTGATCCCGACACATAATGGAAGTGTTACACTAATTGCATCTCGAGAATTTTTGGCACTGTTCAAAACTGATATATGATTATGCTTCAATCAACATCGAATTATATAGGAAATTGTTTTAATGAAATTTGAGAACAATACTCAATTGATTATTACTAGTACTATGTGAAGGGGTAATATTTGTCTGAGGGCAATTCGTGTATTTAGTGGAATAATAGTAACTTAGATTTTGACATGTCAATTGCTATTTGCTACACTATTAATTGGTTTGGATACATTACATTGTACAGGACGAATTGTTATGGGGAGCCGCATGGTTAAGGAGGGCTACTCAGGATGAAAATTTCCTAAACTACATTCAAAGCAATGGTAAAACACTCGGTGCTGAAGACAACATTAATGAGTTCGGTTGGGACAACAAGCATGCTGGCCTCAACGTTCTTGTCTCCAAGGTTCCATCTCTATTCAATTCAAATTTTATTAAAAATAAATCAGTTTAACTTTTATCTTTTTACTAAAATTAAAAAAACAAAAAACAAAAAAAAAAACAATTCGCCCCCCGTGGGGCTCGAACCCACGACCACAAGGTTAAGAGCCTTGCGCTCTACCAACTGAGCTAGACGGGCTGTTTTATTCTTTGTCTTGAAATTGAAATCACACAAATGTATATATGTGACATTGTTTTAATGTAAATGTTGATCAAAAGTAAATGAATTGTTGTTATAGGAAGTCCTAGAAGGAAATGTTGAATCTCTTGAATCTTACAAGACCTCAGCAGAGAGCTTCCTATGCACACTACTACCTGAAACATCAAGTTCACACATCGAGTACACTCCTGGTGGACTCATATACAGACCAGGTGGAAGCAACTTACAACATGCAACTTCAATTGCTTTCCTTGAGTTAGTCTACGCCAATTACTTATCTCGCACGTCACAAACCATCAATTGTGGCAATGTTTATGTTAGTGCACAAACACTTCGGGAGCGTGCCAAGAGACAAGTTGATTACATTTTAGGTGATAACCCCTTGGGTTTATCTTACATGGTTGGTTATGGTAACAATTATCCACAACGTATTCATCATCGTGGCTCATCTCTACCTTCTATTAAGGACCATCCTCAACAGATTGCATGCAAGGAAGGTTCAATATACTTCAATTCAACAAATCCTAACCCAAATGTTCTTGTAGGAGCTATTGTGGGAGGACCTGGAGAAGATGATGTTTATGTGGATGACAGGGCTGATTATAGAAAATCTGAGCCAACCACATATATTAATGCGCCATTTGTTGGGGTTTTAGCATATTTTGTTGCTAATTAA
Protein sequence

>MS.gene68175.t1

MALASKSLLFVLLLVMLIGGRRSVNAHDYAEALSKAIMFFEGQRSGFLPEDQRQKWRGNSGLSDGWTYNTDLTGGYYDAGDNIKFGFPMAFTTTMLSWSVIEFGENMPPNELRNALVAIRWSTDYLLKTVSQSNRIFVQVGEPTSDHNCWERPEDMDTNRKVYAVDAPNPASDVAGETAAALAASSMAFRSSDPGYSETLLRNAVKAFQYADSYRGAYSDNADVKDGVCPYYCDFDGYQDELLWGAAWLRRATQDENFLNYIQSNGKTLGAEDNINEFGWDNKHAGLNVLVSKEVLEGNVESLESYKTSAESFLCTLLPETSSSHIEYTPGGLIYRPGGSNLQHATSIAFLELVYANYLSRTSQTINCGNVYVSAQTLRERAKRQVDYILGDNPLGLSYMVGYGNNYPQRIHHRGSSLPSIKDHPQQIACKEGSIYFNSTNPNPNVLVGAIVGGPGEDDVYVDDRADYRKSEPTTYINAPFVGVLAYFVAN