Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68874.t1 | XP_003610489.2 | 98 | 251 | 5 | 0 | 1 | 251 | 240 | 490 | 9.80E-130 | 473 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68874.t1 | O48802 | 57.9 | 252 | 90 | 2 | 3 | 251 | 254 | 492 | 7.7e-67 | 255.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68874.t1 | G7JKF9 | 98.0 | 251 | 5 | 0 | 1 | 251 | 240 | 490 | 7.0e-130 | 473.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene68874 | 0.810562 | 1.08E-50 | -1.69E-46 |
| MS.gene049151 | MS.gene68874 | 0.825697 | 4.07E-54 | -1.69E-46 |
| MS.gene049153 | MS.gene68874 | 0.801287 | 9.67E-49 | -1.69E-46 |
| MS.gene049297 | MS.gene68874 | 0.811001 | 8.71E-51 | -1.69E-46 |
| MS.gene049378 | MS.gene68874 | 0.828005 | 1.14E-54 | -1.69E-46 |
| MS.gene049382 | MS.gene68874 | 0.816574 | 5.16E-52 | -1.69E-46 |
| MS.gene049435 | MS.gene68874 | 0.823972 | 1.04E-53 | -1.69E-46 |
| MS.gene049919 | MS.gene68874 | 0.801009 | 1.10E-48 | -1.69E-46 |
| MS.gene050226 | MS.gene68874 | 0.879566 | 1.12E-69 | -1.69E-46 |
| MS.gene050227 | MS.gene68874 | 0.860753 | 1.66E-63 | -1.69E-46 |
| MS.gene050228 | MS.gene68874 | 0.86528 | 6.62E-65 | -1.69E-46 |
| MS.gene050442 | MS.gene68874 | 0.837067 | 6.47E-57 | -1.69E-46 |
| MS.gene050516 | MS.gene68874 | 0.809991 | 1.44E-50 | -1.69E-46 |
| MS.gene050623 | MS.gene68874 | -0.84917 | 3.84E-60 | -1.69E-46 |
| MS.gene050642 | MS.gene68874 | 0.815075 | 1.11E-51 | -1.69E-46 |
| MS.gene050762 | MS.gene68874 | 0.877022 | 8.77E-69 | -1.69E-46 |
| MS.gene050763 | MS.gene68874 | 0.875696 | 2.51E-68 | -1.69E-46 |
| MS.gene050807 | MS.gene68874 | 0.81226 | 4.64E-51 | -1.69E-46 |
| MS.gene050987 | MS.gene68874 | 0.803187 | 3.93E-49 | -1.69E-46 |
| MS.gene051198 | MS.gene68874 | 0.803091 | 4.11E-49 | -1.69E-46 |
| MS.gene051535 | MS.gene68874 | 0.802842 | 4.63E-49 | -1.69E-46 |
| MS.gene051663 | MS.gene68874 | 0.817248 | 3.64E-52 | -1.69E-46 |
| MS.gene051860 | MS.gene68874 | 0.826245 | 3.02E-54 | -1.69E-46 |
| MS.gene051983 | MS.gene68874 | 0.813845 | 2.08E-51 | -1.69E-46 |
| MS.gene052255 | MS.gene68874 | 0.806411 | 8.33E-50 | -1.69E-46 |
| MS.gene052323 | MS.gene68874 | 0.800512 | 1.39E-48 | -1.69E-46 |
| MS.gene052665 | MS.gene68874 | 0.817812 | 2.72E-52 | -1.69E-46 |
| MS.gene052858 | MS.gene68874 | 0.802947 | 4.40E-49 | -1.69E-46 |
| MS.gene052860 | MS.gene68874 | 0.819187 | 1.32E-52 | -1.69E-46 |
| MS.gene053555 | MS.gene68874 | 0.821708 | 3.50E-53 | -1.69E-46 |
| MS.gene053577 | MS.gene68874 | 0.819973 | 8.76E-53 | -1.69E-46 |
| MS.gene053836 | MS.gene68874 | 0.840278 | 9.58E-58 | -1.69E-46 |
| MS.gene054379 | MS.gene68874 | 0.88262 | 8.94E-71 | -1.69E-46 |
| MS.gene054467 | MS.gene68874 | 0.808506 | 3.00E-50 | -1.69E-46 |
| MS.gene054468 | MS.gene68874 | 0.800934 | 1.14E-48 | -1.69E-46 |
| MS.gene054930 | MS.gene68874 | 0.842954 | 1.89E-58 | -1.69E-46 |
| MS.gene054942 | MS.gene68874 | 0.823379 | 1.43E-53 | -1.69E-46 |
| MS.gene05510 | MS.gene68874 | 0.807567 | 4.75E-50 | -1.69E-46 |
| MS.gene055356 | MS.gene68874 | 0.800531 | 1.38E-48 | -1.69E-46 |
| MS.gene055604 | MS.gene68874 | 0.805177 | 1.51E-49 | -1.69E-46 |
| MS.gene055701 | MS.gene68874 | 0.81471 | 1.34E-51 | -1.69E-46 |
| MS.gene056480 | MS.gene68874 | 0.806692 | 7.27E-50 | -1.69E-46 |
| MS.gene056875 | MS.gene68874 | 0.801275 | 9.72E-49 | -1.69E-46 |
| MS.gene056979 | MS.gene68874 | 0.806445 | 8.20E-50 | -1.69E-46 |
| MS.gene057469 | MS.gene68874 | 0.841495 | 4.59E-58 | -1.69E-46 |
| MS.gene05761 | MS.gene68874 | 0.80301 | 4.28E-49 | -1.69E-46 |
| MS.gene057665 | MS.gene68874 | 0.802641 | 5.10E-49 | -1.69E-46 |
| MS.gene057750 | MS.gene68874 | 0.840595 | 7.91E-58 | -1.69E-46 |
| MS.gene057869 | MS.gene68874 | 0.842247 | 2.91E-58 | -1.69E-46 |
| MS.gene057929 | MS.gene68874 | 0.835814 | 1.35E-56 | -1.69E-46 |
| MS.gene058142 | MS.gene68874 | 0.80218 | 6.34E-49 | -1.69E-46 |
| MS.gene05872 | MS.gene68874 | 0.801967 | 7.01E-49 | -1.69E-46 |
| MS.gene058833 | MS.gene68874 | 0.820847 | 5.52E-53 | -1.69E-46 |
| MS.gene058949 | MS.gene68874 | 0.820253 | 7.56E-53 | -1.69E-46 |
| MS.gene059124 | MS.gene68874 | 0.844626 | 6.73E-59 | -1.69E-46 |
| MS.gene059128 | MS.gene68874 | 0.835513 | 1.61E-56 | -1.69E-46 |
| MS.gene059161 | MS.gene68874 | 0.823156 | 1.61E-53 | -1.69E-46 |
| MS.gene059331 | MS.gene68874 | 0.807287 | 5.44E-50 | -1.69E-46 |
| MS.gene059335 | MS.gene68874 | 0.801019 | 1.10E-48 | -1.69E-46 |
| MS.gene059725 | MS.gene68874 | 0.800757 | 1.24E-48 | -1.69E-46 |
| MS.gene05984 | MS.gene68874 | 0.812871 | 3.41E-51 | -1.69E-46 |
| MS.gene060084 | MS.gene68874 | 0.807097 | 5.97E-50 | -1.69E-46 |
| MS.gene060137 | MS.gene68874 | -0.832076 | 1.16E-55 | -1.69E-46 |
| MS.gene060480 | MS.gene68874 | 0.822757 | 2.00E-53 | -1.69E-46 |
| MS.gene060683 | MS.gene68874 | 0.829106 | 6.20E-55 | -1.69E-46 |
| MS.gene060685 | MS.gene68874 | 0.82614 | 3.19E-54 | -1.69E-46 |
| MS.gene060802 | MS.gene68874 | 0.82999 | 3.78E-55 | -1.69E-46 |
| MS.gene060803 | MS.gene68874 | 0.83732 | 5.57E-57 | -1.69E-46 |
| MS.gene060998 | MS.gene68874 | 0.83198 | 1.23E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68874.t1 | MTR_4g132780 | 98.400 | 250 | 4 | 0 | 1 | 250 | 240 | 489 | 4.47e-175 | 503 |
| MS.gene68874.t1 | MTR_2g025130 | 46.957 | 230 | 77 | 4 | 21 | 250 | 51 | 235 | 5.56e-52 | 176 |
| MS.gene68874.t1 | MTR_1g012840 | 35.648 | 216 | 81 | 4 | 37 | 250 | 262 | 421 | 1.19e-34 | 132 |
| MS.gene68874.t1 | MTR_2g451540 | 38.117 | 223 | 87 | 6 | 28 | 250 | 272 | 443 | 9.60e-34 | 130 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene68874.t1 | AT1G62390 | 59.533 | 257 | 82 | 3 | 3 | 253 | 254 | 494 | 1.61e-77 | 250 |
| MS.gene68874.t1 | AT4G32070 | 37.383 | 214 | 89 | 5 | 37 | 250 | 318 | 486 | 2.03e-37 | 140 |
| MS.gene68874.t1 | AT4G32070 | 37.383 | 214 | 89 | 5 | 37 | 250 | 318 | 486 | 2.03e-37 | 140 |
| MS.gene68874.t1 | AT2G25290 | 38.249 | 217 | 83 | 5 | 37 | 250 | 281 | 449 | 8.01e-37 | 139 |
| MS.gene68874.t1 | AT2G25290 | 38.249 | 217 | 83 | 5 | 37 | 250 | 281 | 449 | 8.01e-37 | 139 |
| MS.gene68874.t1 | AT2G25290 | 38.249 | 217 | 83 | 5 | 37 | 250 | 281 | 449 | 8.01e-37 | 139 |
| MS.gene68874.t1 | AT2G25290 | 38.249 | 217 | 83 | 5 | 37 | 250 | 281 | 449 | 8.01e-37 | 139 |
| MS.gene68874.t1 | AT5G20360 | 37.383 | 214 | 79 | 5 | 37 | 250 | 270 | 428 | 3.54e-31 | 122 |
| MS.gene68874.t1 | AT5G20360 | 37.383 | 214 | 79 | 5 | 37 | 250 | 270 | 428 | 3.54e-31 | 122 |
| MS.gene68874.t1 | AT5G20360 | 37.383 | 214 | 79 | 5 | 37 | 250 | 300 | 458 | 5.74e-31 | 122 |
| MS.gene68874.t1 | AT5G20360 | 37.383 | 214 | 79 | 5 | 37 | 250 | 300 | 458 | 5.74e-31 | 122 |
| MS.gene68874.t1 | AT5G20360 | 37.383 | 214 | 79 | 5 | 37 | 250 | 350 | 508 | 8.26e-31 | 122 |
| MS.gene68874.t1 | AT5G20360 | 37.383 | 214 | 79 | 5 | 37 | 250 | 360 | 518 | 9.50e-31 | 121 |
| MS.gene68874.t1 | AT5G20360 | 37.383 | 214 | 79 | 5 | 37 | 250 | 360 | 518 | 9.50e-31 | 121 |
Find 67 sgRNAs with CRISPR-Local
Find 70 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGCATTGGCATTCTTCAAC+TGG | 0.265168 | 8.4:+1539066 | MS.gene68874:CDS |
| ACAGCAGGACCATTATTAAA+AGG | 0.297119 | 8.4:-1538289 | None:intergenic |
| AAAGGCTTCAGGACAACTTT+AGG | 0.315931 | 8.4:-1538271 | None:intergenic |
| ATCTTATCAACCTCGGTATC+AGG | 0.324081 | 8.4:-1538790 | None:intergenic |
| GACCATTATTAAAAGGCTTC+AGG | 0.343074 | 8.4:-1538282 | None:intergenic |
| TAAGGCTGCTTCAAAGTTCC+AGG | 0.355515 | 8.4:+1539037 | MS.gene68874:CDS |
| AGATAAAAGTGATTCTATTT+CGG | 0.361509 | 8.4:+1538603 | MS.gene68874:CDS |
| CCGACAGATTCCTATCCTTC+TGG | 0.372691 | 8.4:-1538336 | None:intergenic |
| CAAGGATTGTGATGGTGATT+TGG | 0.383636 | 8.4:+1538504 | MS.gene68874:CDS |
| TGCAAGTCAATATGAGCATC+AGG | 0.394649 | 8.4:-1538940 | None:intergenic |
| AAAGAAAAGCCTGGAGCAAC+GGG | 0.403258 | 8.4:+1538835 | MS.gene68874:CDS |
| TCAGTGACTTCTGTAACTTC+AGG | 0.407687 | 8.4:-1538763 | None:intergenic |
| ATGCCAATGCCGCCACCTCC+TGG | 0.407999 | 8.4:-1539055 | None:intergenic |
| GGAGCAGGAGCCACCTTTGT+TGG | 0.416587 | 8.4:+1538657 | MS.gene68874:CDS |
| CATATTGACTTGCATGAGCT+TGG | 0.418574 | 8.4:+1538949 | MS.gene68874:CDS |
| TCATTATCTCCCGTTGCTCC+AGG | 0.430465 | 8.4:-1538844 | None:intergenic |
| GTTCCAGGAGGTGGCGGCAT+TGG | 0.433016 | 8.4:+1539052 | MS.gene68874:CDS |
| AACAAAGGTGGCTCCTGCTC+CGG | 0.440439 | 8.4:-1538655 | None:intergenic |
| TTGTTTATGATCATGACATC+AGG | 0.448132 | 8.4:+1538389 | MS.gene68874:CDS |
| TTCGAGTTAGATTGCACAGC+AGG | 0.450987 | 8.4:-1538304 | None:intergenic |
| ATCTGTCGGAGGTTTCTATT+CGG | 0.466887 | 8.4:+1538350 | MS.gene68874:CDS |
| TGATCATAAACAAGCTTCAA+TGG | 0.469664 | 8.4:-1538379 | None:intergenic |
| AGATCCACTTTCATCTCCCT+TGG | 0.469667 | 8.4:-1538716 | None:intergenic |
| ATATTGACTTGCATGAGCTT+GGG | 0.472334 | 8.4:+1538950 | MS.gene68874:CDS |
| GCCACCTTTGTTGGAAGAAG+AGG | 0.478587 | 8.4:+1538666 | MS.gene68874:CDS |
| CAGTGACAAGTGAGAAGCTC+AGG | 0.478949 | 8.4:+1539004 | MS.gene68874:CDS |
| TGCTTCAAAGTTCCAGGAGG+TGG | 0.481900 | 8.4:+1539043 | MS.gene68874:CDS |
| AGCTCAGGATCTATTTGATA+AGG | 0.490348 | 8.4:+1539019 | MS.gene68874:CDS |
| CAGTGACTTCTGTAACTTCA+GGG | 0.493370 | 8.4:-1538762 | None:intergenic |
| TCTTCCTCTTCTTCCAACAA+AGG | 0.496918 | 8.4:-1538670 | None:intergenic |
| TCCTCTTCTTCCAACAAAGG+TGG | 0.505242 | 8.4:-1538667 | None:intergenic |
| GGCATTGGCATTCTTCAACT+GGG | 0.505652 | 8.4:+1539067 | MS.gene68874:CDS |
| TTCAGTTCTGATCAAGTACA+AGG | 0.507255 | 8.4:+1538486 | MS.gene68874:CDS |
| TGTAGAAGTTAGTCCGGAGC+AGG | 0.507291 | 8.4:+1538642 | MS.gene68874:CDS |
| ATCTACTGATGAACTCAGAT+TGG | 0.510115 | 8.4:+1538537 | MS.gene68874:CDS |
| AAAATGAGAGCCAGAAGGAT+AGG | 0.530714 | 8.4:+1538326 | MS.gene68874:CDS |
| GATGTTTCAAAAGAAAAGCC+TGG | 0.534064 | 8.4:+1538826 | MS.gene68874:CDS |
| AGTGGATCTCATTCTTCCCT+CGG | 0.536060 | 8.4:+1538730 | MS.gene68874:CDS |
| CATCAGGCTTGCTCAGATGC+CGG | 0.537347 | 8.4:+1538405 | MS.gene68874:CDS |
| ACATATTGTAGAAGTTAGTC+CGG | 0.538956 | 8.4:+1538636 | MS.gene68874:CDS |
| TGATAAGATAATAACAAAGA+AGG | 0.539178 | 8.4:+1538804 | MS.gene68874:CDS |
| AAAAGAAAAGCCTGGAGCAA+CGG | 0.543981 | 8.4:+1538834 | MS.gene68874:CDS |
| ATGTTCACATGTGCGCTGCT+AGG | 0.546089 | 8.4:+1539093 | MS.gene68874:CDS |
| AAGAAGTGGAGATGGATGAT+TGG | 0.546355 | 8.4:+1538872 | MS.gene68874:CDS |
| TTCAAAGTTCCAGGAGGTGG+CGG | 0.547550 | 8.4:+1539046 | MS.gene68874:CDS |
| TGTTATTATCTTATCAACCT+CGG | 0.548455 | 8.4:-1538797 | None:intergenic |
| GCATTGGCATTCTTCAACTG+GGG | 0.567327 | 8.4:+1539068 | MS.gene68874:CDS |
| TGAATGCAAAGAAGTGGAGA+TGG | 0.567536 | 8.4:+1538864 | MS.gene68874:CDS |
| GTGACCAAGGGAGATGAAAG+TGG | 0.568869 | 8.4:+1538712 | MS.gene68874:CDS |
| TGTCGGAGGTTTCTATTCGG+TGG | 0.583849 | 8.4:+1538353 | MS.gene68874:CDS |
| CACTGAAGTTCCTGATACCG+AGG | 0.590229 | 8.4:+1538780 | MS.gene68874:CDS |
| ACTCTGAAACTGCAGTTCAC+CGG | 0.593018 | 8.4:-1538424 | None:intergenic |
| TTTCAGAGTACTTAGAGATG+TGG | 0.594565 | 8.4:+1538438 | MS.gene68874:CDS |
| AGATAATGAATGCAAAGAAG+TGG | 0.599861 | 8.4:+1538858 | MS.gene68874:CDS |
| ATCAGAACTGAATTTGACGA+AGG | 0.601722 | 8.4:-1538475 | None:intergenic |
| TGACTTGCATGAGCTTGGGA+TGG | 0.605109 | 8.4:+1538954 | MS.gene68874:CDS |
| CCAGAAGGATAGGAATCTGT+CGG | 0.613760 | 8.4:+1538336 | MS.gene68874:CDS |
| CGTTGAGAATGAAGTGACCA+AGG | 0.628866 | 8.4:+1538699 | MS.gene68874:CDS |
| TGGGATGGAGCTATGTTCAG+AGG | 0.646712 | 8.4:+1538969 | MS.gene68874:CDS |
| GCAAGTCAATATGAGCATCA+GGG | 0.659898 | 8.4:-1538939 | None:intergenic |
| GTTGAGAATGAAGTGACCAA+GGG | 0.663815 | 8.4:+1538700 | MS.gene68874:CDS |
| TTCAGGGACAGAGTCACCGA+GGG | 0.668184 | 8.4:-1538746 | None:intergenic |
| GGTCAATACCAACATGTGAG+CGG | 0.673952 | 8.4:-1538918 | None:intergenic |
| ATCAAGTACAAGGATTGTGA+TGG | 0.683892 | 8.4:+1538496 | MS.gene68874:CDS |
| GAAGGATAGGAATCTGTCGG+AGG | 0.709195 | 8.4:+1538339 | MS.gene68874:CDS |
| CTTCAGGGACAGAGTCACCG+AGG | 0.713125 | 8.4:-1538747 | None:intergenic |
| GGCTGCTTCAAAGTTCCAGG+AGG | 0.723223 | 8.4:+1539040 | MS.gene68874:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGATAAAAGTGATTCTATTT+CGG | + | chr8.4:1538603-1538622 | MS.gene68874:CDS | 20.0% |
| !! | TGATAAGATAATAACAAAGA+AGG | + | chr8.4:1538804-1538823 | MS.gene68874:CDS | 20.0% |
| ! | TGTTATTATCTTATCAACCT+CGG | - | chr8.4:1538800-1538819 | None:intergenic | 25.0% |
| ACATATTGTAGAAGTTAGTC+CGG | + | chr8.4:1538636-1538655 | MS.gene68874:CDS | 30.0% | |
| AGATAATGAATGCAAAGAAG+TGG | + | chr8.4:1538858-1538877 | MS.gene68874:CDS | 30.0% | |
| TGATCATAAACAAGCTTCAA+TGG | - | chr8.4:1538382-1538401 | None:intergenic | 30.0% | |
| TTGTTTATGATCATGACATC+AGG | + | chr8.4:1538389-1538408 | MS.gene68874:CDS | 30.0% | |
| ACAGCAGGACCATTATTAAA+AGG | - | chr8.4:1538292-1538311 | None:intergenic | 35.0% | |
| AGCTCAGGATCTATTTGATA+AGG | + | chr8.4:1539019-1539038 | MS.gene68874:CDS | 35.0% | |
| ATCAAGTACAAGGATTGTGA+TGG | + | chr8.4:1538496-1538515 | MS.gene68874:CDS | 35.0% | |
| ATCAGAACTGAATTTGACGA+AGG | - | chr8.4:1538478-1538497 | None:intergenic | 35.0% | |
| ATCTACTGATGAACTCAGAT+TGG | + | chr8.4:1538537-1538556 | MS.gene68874:CDS | 35.0% | |
| GACCATTATTAAAAGGCTTC+AGG | - | chr8.4:1538285-1538304 | None:intergenic | 35.0% | |
| GATGTTTCAAAAGAAAAGCC+TGG | + | chr8.4:1538826-1538845 | MS.gene68874:CDS | 35.0% | |
| ! | GTCCTGAAGCCTTTTAATAA+TGG | + | chr8.4:1538280-1538299 | MS.gene68874:CDS | 35.0% |
| ! | TTCAGTTCTGATCAAGTACA+AGG | + | chr8.4:1538486-1538505 | MS.gene68874:CDS | 35.0% |
| ! | TTTCAGAGTACTTAGAGATG+TGG | + | chr8.4:1538438-1538457 | MS.gene68874:CDS | 35.0% |
| !! | ATATTGACTTGCATGAGCTT+GGG | + | chr8.4:1538950-1538969 | MS.gene68874:CDS | 35.0% |
| AAAAGAAAAGCCTGGAGCAA+CGG | + | chr8.4:1538834-1538853 | MS.gene68874:CDS | 40.0% | |
| AAAATGAGAGCCAGAAGGAT+AGG | + | chr8.4:1538326-1538345 | MS.gene68874:CDS | 40.0% | |
| AAAGGCTTCAGGACAACTTT+AGG | - | chr8.4:1538274-1538293 | None:intergenic | 40.0% | |
| AAGAAGTGGAGATGGATGAT+TGG | + | chr8.4:1538872-1538891 | MS.gene68874:CDS | 40.0% | |
| ATCTGTCGGAGGTTTCTATT+CGG | + | chr8.4:1538350-1538369 | MS.gene68874:CDS | 40.0% | |
| ATCTTATCAACCTCGGTATC+AGG | - | chr8.4:1538793-1538812 | None:intergenic | 40.0% | |
| CAGTGACTTCTGTAACTTCA+GGG | - | chr8.4:1538765-1538784 | None:intergenic | 40.0% | |
| GCAAGTCAATATGAGCATCA+GGG | - | chr8.4:1538942-1538961 | None:intergenic | 40.0% | |
| GTTGAGAATGAAGTGACCAA+GGG | + | chr8.4:1538700-1538719 | MS.gene68874:CDS | 40.0% | |
| TCAGTGACTTCTGTAACTTC+AGG | - | chr8.4:1538766-1538785 | None:intergenic | 40.0% | |
| TCTTCCTCTTCTTCCAACAA+AGG | - | chr8.4:1538673-1538692 | None:intergenic | 40.0% | |
| TGAATGCAAAGAAGTGGAGA+TGG | + | chr8.4:1538864-1538883 | MS.gene68874:CDS | 40.0% | |
| TGCAAGTCAATATGAGCATC+AGG | - | chr8.4:1538943-1538962 | None:intergenic | 40.0% | |
| ! | CAAGGATTGTGATGGTGATT+TGG | + | chr8.4:1538504-1538523 | MS.gene68874:CDS | 40.0% |
| !! | CATATTGACTTGCATGAGCT+TGG | + | chr8.4:1538949-1538968 | MS.gene68874:CDS | 40.0% |
| AAAGAAAAGCCTGGAGCAAC+GGG | + | chr8.4:1538835-1538854 | MS.gene68874:CDS | 45.0% | |
| AGATCCACTTTCATCTCCCT+TGG | - | chr8.4:1538719-1538738 | None:intergenic | 45.0% | |
| AGTGGATCTCATTCTTCCCT+CGG | + | chr8.4:1538730-1538749 | MS.gene68874:CDS | 45.0% | |
| CCAGAAGGATAGGAATCTGT+CGG | + | chr8.4:1538336-1538355 | MS.gene68874:CDS | 45.0% | |
| CGTTGAGAATGAAGTGACCA+AGG | + | chr8.4:1538699-1538718 | MS.gene68874:CDS | 45.0% | |
| CTCGAAAAATGAGAGCCAGA+AGG | + | chr8.4:1538321-1538340 | MS.gene68874:CDS | 45.0% | |
| GGTCAATACCAACATGTGAG+CGG | - | chr8.4:1538921-1538940 | None:intergenic | 45.0% | |
| TAAGGCTGCTTCAAAGTTCC+AGG | + | chr8.4:1539037-1539056 | MS.gene68874:CDS | 45.0% | |
| TCCTCTTCTTCCAACAAAGG+TGG | - | chr8.4:1538670-1538689 | None:intergenic | 45.0% | |
| ! | GCATTGGCATTCTTCAACTG+GGG | + | chr8.4:1539068-1539087 | MS.gene68874:CDS | 45.0% |
| ! | TTCGAGTTAGATTGCACAGC+AGG | - | chr8.4:1538307-1538326 | None:intergenic | 45.0% |
| !! | ACTCTGAAACTGCAGTTCAC+CGG | - | chr8.4:1538427-1538446 | None:intergenic | 45.0% |
| !! | GGCATTGGCATTCTTCAACT+GGG | + | chr8.4:1539067-1539086 | MS.gene68874:CDS | 45.0% |
| ATGTTCACATGTGCGCTGCT+AGG | + | chr8.4:1539093-1539112 | MS.gene68874:CDS | 50.0% | |
| CACTGAAGTTCCTGATACCG+AGG | + | chr8.4:1538780-1538799 | MS.gene68874:CDS | 50.0% | |
| CAGTGACAAGTGAGAAGCTC+AGG | + | chr8.4:1539004-1539023 | MS.gene68874:CDS | 50.0% | |
| CCGACAGATTCCTATCCTTC+TGG | - | chr8.4:1538339-1538358 | None:intergenic | 50.0% | |
| GAAGGATAGGAATCTGTCGG+AGG | + | chr8.4:1538339-1538358 | MS.gene68874:CDS | 50.0% | |
| GCCACCTTTGTTGGAAGAAG+AGG | + | chr8.4:1538666-1538685 | MS.gene68874:CDS | 50.0% | |
| GTGACCAAGGGAGATGAAAG+TGG | + | chr8.4:1538712-1538731 | MS.gene68874:CDS | 50.0% | |
| TCATTATCTCCCGTTGCTCC+AGG | - | chr8.4:1538847-1538866 | None:intergenic | 50.0% | |
| TGCTTCAAAGTTCCAGGAGG+TGG | + | chr8.4:1539043-1539062 | MS.gene68874:CDS | 50.0% | |
| TGGGATGGAGCTATGTTCAG+AGG | + | chr8.4:1538969-1538988 | MS.gene68874:CDS | 50.0% | |
| TGTAGAAGTTAGTCCGGAGC+AGG | + | chr8.4:1538642-1538661 | MS.gene68874:CDS | 50.0% | |
| TGTCGGAGGTTTCTATTCGG+TGG | + | chr8.4:1538353-1538372 | MS.gene68874:CDS | 50.0% | |
| TTCAAAGTTCCAGGAGGTGG+CGG | + | chr8.4:1539046-1539065 | MS.gene68874:CDS | 50.0% | |
| ! | CAGCTTTTCCGCTCACATGT+TGG | + | chr8.4:1538910-1538929 | MS.gene68874:CDS | 50.0% |
| ! | TGACTTGCATGAGCTTGGGA+TGG | + | chr8.4:1538954-1538973 | MS.gene68874:CDS | 50.0% |
| !! | CGGCATTGGCATTCTTCAAC+TGG | + | chr8.4:1539066-1539085 | MS.gene68874:CDS | 50.0% |
| AACAAAGGTGGCTCCTGCTC+CGG | - | chr8.4:1538658-1538677 | None:intergenic | 55.0% | |
| GGCTGCTTCAAAGTTCCAGG+AGG | + | chr8.4:1539040-1539059 | MS.gene68874:CDS | 55.0% | |
| TTCAGGGACAGAGTCACCGA+GGG | - | chr8.4:1538749-1538768 | None:intergenic | 55.0% | |
| ! | CATCAGGCTTGCTCAGATGC+CGG | + | chr8.4:1538405-1538424 | MS.gene68874:CDS | 55.0% |
| CTTCAGGGACAGAGTCACCG+AGG | - | chr8.4:1538750-1538769 | None:intergenic | 60.0% | |
| GGAGCAGGAGCCACCTTTGT+TGG | + | chr8.4:1538657-1538676 | MS.gene68874:CDS | 60.0% | |
| ATGCCAATGCCGCCACCTCC+TGG | - | chr8.4:1539058-1539077 | None:intergenic | 65.0% | |
| ! | GTTCCAGGAGGTGGCGGCAT+TGG | + | chr8.4:1539052-1539071 | MS.gene68874:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 1538268 | 1539131 | 1538268 | ID=MS.gene68874 |
| chr8.4 | mRNA | 1538268 | 1539131 | 1538268 | ID=MS.gene68874.t1;Parent=MS.gene68874 |
| chr8.4 | exon | 1538268 | 1539131 | 1538268 | ID=MS.gene68874.t1.exon1;Parent=MS.gene68874.t1 |
| chr8.4 | CDS | 1538268 | 1539131 | 1538268 | ID=cds.MS.gene68874.t1;Parent=MS.gene68874.t1 |
| Gene Sequence |
| Protein sequence |
