Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72424.t1 | GAU24683.1 | 99.5 | 188 | 1 | 0 | 4 | 191 | 305 | 492 | 1.60E-99 | 372.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72424.t1 | Q9LSE2 | 83.2 | 190 | 29 | 2 | 4 | 193 | 307 | 493 | 3.0e-83 | 309.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene72424.t1 | A0A2Z6M3F1 | 99.5 | 188 | 1 | 0 | 4 | 191 | 305 | 492 | 1.1e-99 | 372.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene72424 | 0.816713 | 4.80E-52 | -1.69E-46 |
| MS.gene049217 | MS.gene72424 | 0.832707 | 8.11E-56 | -1.69E-46 |
| MS.gene049285 | MS.gene72424 | 0.831463 | 1.65E-55 | -1.69E-46 |
| MS.gene049320 | MS.gene72424 | 0.813883 | 2.04E-51 | -1.69E-46 |
| MS.gene049634 | MS.gene72424 | -0.817782 | 2.76E-52 | -1.69E-46 |
| MS.gene050163 | MS.gene72424 | 0.829957 | 3.85E-55 | -1.69E-46 |
| MS.gene050165 | MS.gene72424 | 0.840325 | 9.31E-58 | -1.69E-46 |
| MS.gene050323 | MS.gene72424 | 0.807785 | 4.27E-50 | -1.69E-46 |
| MS.gene050333 | MS.gene72424 | 0.834727 | 2.54E-56 | -1.69E-46 |
| MS.gene050444 | MS.gene72424 | 0.863628 | 2.17E-64 | -1.69E-46 |
| MS.gene050504 | MS.gene72424 | 0.829906 | 3.96E-55 | -1.69E-46 |
| MS.gene050518 | MS.gene72424 | 0.802372 | 5.79E-49 | -1.69E-46 |
| MS.gene050612 | MS.gene72424 | 0.854962 | 8.67E-62 | -1.69E-46 |
| MS.gene050675 | MS.gene72424 | 0.801873 | 7.33E-49 | -1.69E-46 |
| MS.gene05079 | MS.gene72424 | -0.854841 | 9.41E-62 | -1.69E-46 |
| MS.gene050809 | MS.gene72424 | -0.804347 | 2.26E-49 | -1.69E-46 |
| MS.gene050868 | MS.gene72424 | 0.822261 | 2.60E-53 | -1.69E-46 |
| MS.gene050871 | MS.gene72424 | 0.823753 | 1.17E-53 | -1.69E-46 |
| MS.gene050986 | MS.gene72424 | 0.809584 | 1.76E-50 | -1.69E-46 |
| MS.gene051138 | MS.gene72424 | -0.834254 | 3.33E-56 | -1.69E-46 |
| MS.gene051228 | MS.gene72424 | 0.828313 | 9.63E-55 | -1.69E-46 |
| MS.gene051617 | MS.gene72424 | 0.800743 | 1.25E-48 | -1.69E-46 |
| MS.gene051810 | MS.gene72424 | 0.822725 | 2.03E-53 | -1.69E-46 |
| MS.gene051858 | MS.gene72424 | 0.804354 | 2.25E-49 | -1.69E-46 |
| MS.gene051949 | MS.gene72424 | 0.822513 | 2.28E-53 | -1.69E-46 |
| MS.gene052379 | MS.gene72424 | 0.828841 | 7.18E-55 | -1.69E-46 |
| MS.gene052805 | MS.gene72424 | -0.821804 | 3.32E-53 | -1.69E-46 |
| MS.gene052870 | MS.gene72424 | 0.834083 | 3.68E-56 | -1.69E-46 |
| MS.gene052872 | MS.gene72424 | 0.832856 | 7.45E-56 | -1.69E-46 |
| MS.gene053104 | MS.gene72424 | 0.804957 | 1.68E-49 | -1.69E-46 |
| MS.gene053284 | MS.gene72424 | 0.820084 | 8.27E-53 | -1.69E-46 |
| MS.gene053285 | MS.gene72424 | 0.813076 | 3.07E-51 | -1.69E-46 |
| MS.gene053561 | MS.gene72424 | -0.825629 | 4.22E-54 | -1.69E-46 |
| MS.gene053824 | MS.gene72424 | 0.807763 | 4.31E-50 | -1.69E-46 |
| MS.gene053916 | MS.gene72424 | 0.833386 | 5.49E-56 | -1.69E-46 |
| MS.gene054642 | MS.gene72424 | 0.813063 | 3.09E-51 | -1.69E-46 |
| MS.gene054954 | MS.gene72424 | 0.820807 | 5.64E-53 | -1.69E-46 |
| MS.gene055206 | MS.gene72424 | 0.816563 | 5.19E-52 | -1.69E-46 |
| MS.gene055362 | MS.gene72424 | 0.804985 | 1.66E-49 | -1.69E-46 |
| MS.gene055502 | MS.gene72424 | 0.818888 | 1.55E-52 | -1.69E-46 |
| MS.gene055577 | MS.gene72424 | 0.824986 | 5.99E-54 | -1.69E-46 |
| MS.gene055636 | MS.gene72424 | 0.817808 | 2.72E-52 | -1.69E-46 |
| MS.gene055638 | MS.gene72424 | 0.827936 | 1.19E-54 | -1.69E-46 |
| MS.gene055748 | MS.gene72424 | 0.830725 | 2.50E-55 | -1.69E-46 |
| MS.gene055750 | MS.gene72424 | 0.810354 | 1.20E-50 | -1.69E-46 |
| MS.gene055751 | MS.gene72424 | 0.840714 | 7.36E-58 | -1.69E-46 |
| MS.gene05592 | MS.gene72424 | 0.807826 | 4.18E-50 | -1.69E-46 |
| MS.gene055941 | MS.gene72424 | 0.809382 | 1.94E-50 | -1.69E-46 |
| MS.gene056504 | MS.gene72424 | 0.821163 | 4.67E-53 | -1.69E-46 |
| MS.gene056549 | MS.gene72424 | 0.815355 | 9.65E-52 | -1.69E-46 |
| MS.gene056657 | MS.gene72424 | 0.813498 | 2.48E-51 | -1.69E-46 |
| MS.gene056856 | MS.gene72424 | -0.811088 | 8.34E-51 | -1.69E-46 |
| MS.gene056903 | MS.gene72424 | 0.841768 | 3.89E-58 | -1.69E-46 |
| MS.gene057246 | MS.gene72424 | 0.815743 | 7.91E-52 | -1.69E-46 |
| MS.gene057926 | MS.gene72424 | 0.831321 | 1.78E-55 | -1.69E-46 |
| MS.gene058419 | MS.gene72424 | 0.826405 | 2.76E-54 | -1.69E-46 |
| MS.gene058773 | MS.gene72424 | 0.826785 | 2.24E-54 | -1.69E-46 |
| MS.gene058903 | MS.gene72424 | 0.800363 | 1.49E-48 | -1.69E-46 |
| MS.gene059022 | MS.gene72424 | 0.828443 | 8.96E-55 | -1.69E-46 |
| MS.gene059023 | MS.gene72424 | 0.807234 | 5.58E-50 | -1.69E-46 |
| MS.gene059079 | MS.gene72424 | 0.804445 | 2.15E-49 | -1.69E-46 |
| MS.gene05913 | MS.gene72424 | 0.825202 | 5.33E-54 | -1.69E-46 |
| MS.gene05934 | MS.gene72424 | 0.817247 | 3.64E-52 | -1.69E-46 |
| MS.gene059677 | MS.gene72424 | 0.829714 | 4.41E-55 | -1.69E-46 |
| MS.gene059865 | MS.gene72424 | 0.818737 | 1.68E-52 | -1.69E-46 |
| MS.gene060762 | MS.gene72424 | 0.827671 | 1.38E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 54 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAGCCATCAATTCTTTGC+AGG | 0.303692 | 7.4:+23213689 | None:intergenic |
| GCTATCTACCATGAGGGCTT+TGG | 0.366010 | 7.4:-23212513 | MS.gene72424:CDS |
| TACAGGTGGAAGTTAGAGTA+AGG | 0.391657 | 7.4:-23212589 | MS.gene72424:intron |
| GGCTTCCTGCAAAGAATTGA+TGG | 0.402648 | 7.4:-23213694 | MS.gene72424:CDS |
| GCTGTTATCAGTTGTTTCAA+TGG | 0.414184 | 7.4:-23212464 | MS.gene72424:CDS |
| TAATAATCTTCATAATGAAC+TGG | 0.430336 | 7.4:-23212959 | MS.gene72424:CDS |
| GAAGGTTGCAGCAGTGAGCC+AGG | 0.431678 | 7.4:+23212925 | None:intergenic |
| CAGCACTGCTTTAATTTGCT+CGG | 0.447013 | 7.4:+23212171 | None:intergenic |
| TAGATCCTCTTTGACTCGAC+AGG | 0.449537 | 7.4:+23212855 | None:intergenic |
| AGCACTGCTTTAATTTGCTC+GGG | 0.451779 | 7.4:+23212172 | None:intergenic |
| TATCATTGAGTTTCTTCCTC+CGG | 0.461791 | 7.4:+23213661 | None:intergenic |
| CCTTGGATTGGATGTTCAGC+AGG | 0.462769 | 7.4:-23212486 | MS.gene72424:CDS |
| ATGATAGGTTGTATATGCTT+AGG | 0.465770 | 7.4:-23213644 | MS.gene72424:CDS |
| GGCTTTGGATAACCTTGGAT+TGG | 0.469562 | 7.4:-23212498 | MS.gene72424:CDS |
| GCAGCAATGCAGAGAAGGCC+AGG | 0.479876 | 7.4:-23212203 | MS.gene72424:CDS |
| TCGGTGGAGTGGGTGTCAAC+GGG | 0.480196 | 7.4:+23212884 | None:intergenic |
| TTTGCTCGGGGAGTACATCC+TGG | 0.485199 | 7.4:+23212185 | None:intergenic |
| GCAAATTAAAGCAGTGCTGT+TGG | 0.486197 | 7.4:-23212167 | MS.gene72424:CDS |
| TTTGGGGCTTAGCAAGTCAC+CGG | 0.489029 | 7.4:+23212828 | None:intergenic |
| ACAAAACATATGAATGTTGA+CGG | 0.497241 | 7.4:+23212556 | None:intergenic |
| TTGGATTCAGCGGGCTACCA+TGG | 0.497757 | 7.4:-23212148 | MS.gene72424:CDS |
| GTCGGTGGAGTGGGTGTCAA+CGG | 0.499586 | 7.4:+23212883 | None:intergenic |
| ATGAGGGCTTTGGATAACCT+TGG | 0.500549 | 7.4:-23212503 | MS.gene72424:CDS |
| ATGGACAGGGCTTCAATACT+CGG | 0.509966 | 7.4:-23213021 | MS.gene72424:CDS |
| GGAGGAAGAAACTCAATGAT+AGG | 0.514773 | 7.4:-23213659 | MS.gene72424:CDS |
| AATTGATGGCTGAGAGGCGC+CGG | 0.519288 | 7.4:-23213680 | MS.gene72424:CDS |
| CAGGGAAGAGTCGGTGGAGT+GGG | 0.527264 | 7.4:+23212874 | None:intergenic |
| GTCAAAGAGGATCTATATCC+CGG | 0.532043 | 7.4:-23212847 | MS.gene72424:CDS |
| ACAGGTGGAAGTTAGAGTAA+GGG | 0.540261 | 7.4:-23212588 | MS.gene72424:intron |
| AGCAGTGCTGTTGGATTCAG+CGG | 0.541017 | 7.4:-23212158 | MS.gene72424:CDS |
| GTGGAAGTTAGAGTAAGGGA+AGG | 0.547671 | 7.4:-23212584 | MS.gene72424:CDS |
| TCTTAGCAGCAATGCAGAGA+AGG | 0.548391 | 7.4:-23212208 | MS.gene72424:intron |
| AGATGCAGTTGACTACTTGA+AGG | 0.553444 | 7.4:-23212998 | MS.gene72424:CDS |
| TGAAAGCTTGCACTTGCAGA+AGG | 0.560535 | 7.4:+23212907 | None:intergenic |
| AAGGTTATCCAAAGCCCTCA+TGG | 0.562752 | 7.4:+23212505 | None:intergenic |
| TGGAAGTTAGAGTAAGGGAA+GGG | 0.572558 | 7.4:-23212583 | MS.gene72424:CDS |
| TGATGGCTGAGAGGCGCCGG+AGG | 0.573433 | 7.4:-23213677 | MS.gene72424:CDS |
| TCTTCCCTGTCGAGTCAAAG+AGG | 0.586826 | 7.4:-23212860 | MS.gene72424:CDS |
| TTGACTCGACAGGGAAGAGT+CGG | 0.596564 | 7.4:+23212865 | None:intergenic |
| ACTTGAAGGAGCTGCTGCAG+CGG | 0.611585 | 7.4:-23212984 | MS.gene72424:CDS |
| ACTCGACAGGGAAGAGTCGG+TGG | 0.612573 | 7.4:+23212868 | None:intergenic |
| ACAGGGAAGAGTCGGTGGAG+TGG | 0.614037 | 7.4:+23212873 | None:intergenic |
| ATGGTAGATAGCAAAAGTCC+TGG | 0.618329 | 7.4:+23212524 | None:intergenic |
| GAACTGGAATCAACTCCACC+TGG | 0.619030 | 7.4:-23212943 | MS.gene72424:CDS |
| ACTTCATTCAATTCAAACCA+TGG | 0.624434 | 7.4:+23212131 | None:intergenic |
| ATTAGACGTGTTCAGAGCTG+AGG | 0.631196 | 7.4:-23212435 | MS.gene72424:intron |
| TGTTGTGCCTAAAATTAGCA+AGG | 0.631769 | 7.4:-23213619 | MS.gene72424:intron |
| TTGGGGCTTAGCAAGTCACC+GGG | 0.636110 | 7.4:+23212829 | None:intergenic |
| GCAAAGAATTGATGGCTGAG+AGG | 0.639423 | 7.4:-23213686 | MS.gene72424:CDS |
| CCTGCTGAACATCCAATCCA+AGG | 0.640256 | 7.4:+23212486 | None:intergenic |
| GCAGTGCTGTTGGATTCAGC+GGG | 0.652187 | 7.4:-23212157 | MS.gene72424:CDS |
| AGATCCTCTTTGACTCGACA+GGG | 0.653087 | 7.4:+23212856 | None:intergenic |
| GCACTGCTTTAATTTGCTCG+GGG | 0.667619 | 7.4:+23212173 | None:intergenic |
| GGTTGCAGCAGTGAGCCAGG+TGG | 0.670958 | 7.4:+23212928 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTCATTTATTTTATAGA+TGG | - | chr7.4:23212793-23212812 | MS.gene72424:intron | 10.0% |
| !!! | TAATTTTACTATTTATTCAA+TGG | + | chr7.4:23212494-23212513 | None:intergenic | 10.0% |
| !! | TTTACAAAATATTGTGAAAT+TGG | - | chr7.4:23212254-23212273 | MS.gene72424:intron | 15.0% |
| !!! | AAAAATGTTATGTTTTTTGA+AGG | + | chr7.4:23212526-23212545 | None:intergenic | 15.0% |
| !!! | CATCAAATATTTTTTCTAAA+AGG | + | chr7.4:23212282-23212301 | None:intergenic | 15.0% |
| !! | GATTTCTATTATTCAAATCA+AGG | + | chr7.4:23212554-23212573 | None:intergenic | 20.0% |
| !! | TAATAATCTTCATAATGAAC+TGG | - | chr7.4:23212874-23212893 | MS.gene72424:CDS | 20.0% |
| !! | TGAATAATAGAAATCATGAA+GGG | - | chr7.4:23212559-23212578 | MS.gene72424:CDS | 20.0% |
| !! | TTGAATAATAGAAATCATGA+AGG | - | chr7.4:23212558-23212577 | MS.gene72424:CDS | 20.0% |
| !!! | ACTAGTTTTTTGTATTTTGT+TGG | - | chr7.4:23212597-23212616 | MS.gene72424:intron | 20.0% |
| !!! | ATTTATTTTATAGATGGACA+GGG | - | chr7.4:23212799-23212818 | MS.gene72424:intron | 20.0% |
| !!! | TCCATTAATGTTTTAAATTG+CGG | - | chr7.4:23212318-23212337 | MS.gene72424:intron | 20.0% |
| !!! | TTGCTTTTGTAATTTTGTTT+GGG | - | chr7.4:23212659-23212678 | MS.gene72424:intron | 20.0% |
| ! | AAATTACAAAAGCAACAAGA+TGG | + | chr7.4:23212654-23212673 | None:intergenic | 25.0% |
| ! | AATGTAAGAAAGGTTTATGA+TGG | + | chr7.4:23213465-23213484 | None:intergenic | 25.0% |
| ! | ACAAAACATATGAATGTTGA+CGG | + | chr7.4:23213280-23213299 | None:intergenic | 25.0% |
| ! | CAAAAAATTGTTGTCAAATG+CGG | - | chr7.4:23212372-23212391 | MS.gene72424:intron | 25.0% |
| ! | CATACAGTAAAATGTAAGAA+AGG | + | chr7.4:23213475-23213494 | None:intergenic | 25.0% |
| ! | TCAATGGCATTTCTAATTAT+AGG | + | chr7.4:23212478-23212497 | None:intergenic | 25.0% |
| !! | AATGTTGTTGCTTATGTTAA+TGG | - | chr7.4:23212698-23212717 | MS.gene72424:intron | 25.0% |
| !! | ACCGCAATTTAAAACATTAA+TGG | + | chr7.4:23212322-23212341 | None:intergenic | 25.0% |
| !!! | ATTTCGAGTTCACTAATTAT+TGG | - | chr7.4:23213558-23213577 | MS.gene72424:intron | 25.0% |
| !!! | CATTTATTTTATAGATGGAC+AGG | - | chr7.4:23212798-23212817 | MS.gene72424:intron | 25.0% |
| !!! | GTTGCTTTTGTAATTTTGTT+TGG | - | chr7.4:23212658-23212677 | MS.gene72424:intron | 25.0% |
| !!! | TGCTTTTGTAATTTTGTTTG+GGG | - | chr7.4:23212660-23212679 | MS.gene72424:intron | 25.0% |
| !!! | TTCTTGTTTCTGAAATTTAC+AGG | - | chr7.4:23213227-23213246 | MS.gene72424:intron | 25.0% |
| AAATAGAACGTGCTAATGTT+AGG | - | chr7.4:23212760-23212779 | MS.gene72424:intron | 30.0% | |
| AAGGCAAACAAAAATTACCT+TGG | + | chr7.4:23213041-23213060 | None:intergenic | 30.0% | |
| ACATGGCAAATAACTGAATA+AGG | - | chr7.4:23213154-23213173 | MS.gene72424:intron | 30.0% | |
| AGGCAAACAAAAATTACCTT+GGG | + | chr7.4:23213040-23213059 | None:intergenic | 30.0% | |
| ATGATAGGTTGTATATGCTT+AGG | - | chr7.4:23212189-23212208 | MS.gene72424:CDS | 30.0% | |
| CACAAAAAACAACCTAAAAG+AGG | + | chr7.4:23213519-23213538 | None:intergenic | 30.0% | |
| CATGGCAAATAACTGAATAA+GGG | - | chr7.4:23213155-23213174 | MS.gene72424:intron | 30.0% | |
| CATGTTACTGGTATAGATAA+AGG | + | chr7.4:23213139-23213158 | None:intergenic | 30.0% | |
| CCTAAAATTAGCAAGGTATA+TGG | - | chr7.4:23212221-23212240 | MS.gene72424:intron | 30.0% | |
| CTTTATCTATACCAGTAACA+TGG | - | chr7.4:23213137-23213156 | MS.gene72424:intron | 30.0% | |
| ! | ATTTCTACCATTTGAAGTTC+TGG | - | chr7.4:23213581-23213600 | MS.gene72424:intron | 30.0% |
| ! | CCATATACCTTGCTAATTTT+AGG | + | chr7.4:23212224-23212243 | None:intergenic | 30.0% |
| ! | GATGTTTATATGCCTCTTTT+AGG | - | chr7.4:23213504-23213523 | MS.gene72424:intron | 30.0% |
| ! | GTTTGTGACAATAATTTGCA+TGG | + | chr7.4:23213115-23213134 | None:intergenic | 30.0% |
| !! | TTGTTTCTGAAATTTACAGG+TGG | - | chr7.4:23213230-23213249 | MS.gene72424:intron | 30.0% |
| AACTATTTGGACGGTAATTG+AGG | - | chr7.4:23213190-23213209 | MS.gene72424:intron | 35.0% | |
| ATCAACACCAGAACTTCAAA+TGG | + | chr7.4:23213591-23213610 | None:intergenic | 35.0% | |
| CAAAAATTACCTTGGGAGAT+TGG | + | chr7.4:23213033-23213052 | None:intergenic | 35.0% | |
| CCTTAAAACACTTCGCATTA+AGG | + | chr7.4:23213060-23213079 | None:intergenic | 35.0% | |
| GTACGTTGATGCAAACTATT+TGG | - | chr7.4:23213177-23213196 | MS.gene72424:intron | 35.0% | |
| GTTGATGCAAACTATTTGGA+CGG | - | chr7.4:23213181-23213200 | MS.gene72424:intron | 35.0% | |
| TATCATTGAGTTTCTTCCTC+CGG | + | chr7.4:23212175-23212194 | None:intergenic | 35.0% | |
| TCAGTTATTTGCCATGTTAC+TGG | + | chr7.4:23213151-23213170 | None:intergenic | 35.0% | |
| TGTTGTGCCTAAAATTAGCA+AGG | - | chr7.4:23212214-23212233 | MS.gene72424:intron | 35.0% | |
| ! | GCTGTTATCAGTTGTTTCAA+TGG | - | chr7.4:23213369-23213388 | MS.gene72424:intron | 35.0% |
| ! | TGAGGTATTAGTTCTTTCTC+CGG | - | chr7.4:23213416-23213435 | MS.gene72424:intron | 35.0% |
| ! | TTTTTATGTGACCGCGATTA+AGG | + | chr7.4:23212407-23212426 | None:intergenic | 35.0% |
| !! | ACTTTTGCTATCTACCATGA+GGG | - | chr7.4:23213314-23213333 | MS.gene72424:intron | 35.0% |
| !! | CCTTAATGCGAAGTGTTTTA+AGG | - | chr7.4:23213057-23213076 | MS.gene72424:intron | 35.0% |
| ACACAAAGCAAATGCAACAC+TGG | + | chr7.4:23212724-23212743 | None:intergenic | 40.0% | |
| ACAGGTGGAAGTTAGAGTAA+GGG | - | chr7.4:23213245-23213264 | MS.gene72424:intron | 40.0% | |
| AGATGCAGTTGACTACTTGA+AGG | - | chr7.4:23212835-23212854 | MS.gene72424:CDS | 40.0% | |
| ATGGTAGATAGCAAAAGTCC+TGG | + | chr7.4:23213312-23213331 | None:intergenic | 40.0% | |
| GCAAATTAAAGCAGTGCTGT+TGG | - | chr7.4:23213666-23213685 | MS.gene72424:CDS | 40.0% | |
| GCTACCATGGTTTGAATTGA+GGG | - | chr7.4:23213698-23213717 | MS.gene72424:CDS | 40.0% | |
| GGAGGAAGAAACTCAATGAT+AGG | - | chr7.4:23212174-23212193 | MS.gene72424:CDS | 40.0% | |
| GTCAAAGAGGATCTATATCC+CGG | - | chr7.4:23212986-23213005 | MS.gene72424:CDS | 40.0% | |
| GTTTGGGGAATCTAGTGTTT+GGG | - | chr7.4:23212675-23212694 | MS.gene72424:intron | 40.0% | |
| TACAGGTGGAAGTTAGAGTA+AGG | - | chr7.4:23213244-23213263 | MS.gene72424:intron | 40.0% | |
| TGGAAGTTAGAGTAAGGGAA+GGG | - | chr7.4:23213250-23213269 | MS.gene72424:intron | 40.0% | |
| TGTTTGGGGAATCTAGTGTT+TGG | - | chr7.4:23212674-23212693 | MS.gene72424:intron | 40.0% | |
| TTAAATTGCGGTCGCAGTAA+TGG | - | chr7.4:23212330-23212349 | MS.gene72424:intron | 40.0% | |
| !! | AGCACTGCTTTAATTTGCTC+GGG | + | chr7.4:23213664-23213683 | None:intergenic | 40.0% |
| !! | CAGCACTGCTTTAATTTGCT+CGG | + | chr7.4:23213665-23213684 | None:intergenic | 40.0% |
| !! | GACTTTTGCTATCTACCATG+AGG | - | chr7.4:23213313-23213332 | MS.gene72424:intron | 40.0% |
| !!! | ACCTTGGGAGATTGGTTTTT+GGG | + | chr7.4:23213025-23213044 | None:intergenic | 40.0% |
| !!! | TACCTTGGGAGATTGGTTTT+TGG | + | chr7.4:23213026-23213045 | None:intergenic | 40.0% |
| AAGGTTATCCAAAGCCCTCA+TGG | + | chr7.4:23213331-23213350 | None:intergenic | 45.0% | |
| ATGGACAGGGCTTCAATACT+CGG | - | chr7.4:23212812-23212831 | MS.gene72424:intron | 45.0% | |
| ATTAGACGTGTTCAGAGCTG+AGG | - | chr7.4:23213398-23213417 | MS.gene72424:intron | 45.0% | |
| CTCAGCCATCAATTCTTTGC+AGG | + | chr7.4:23212147-23212166 | None:intergenic | 45.0% | |
| GGCATCACACAAGCATTTCA+AGG | + | chr7.4:23212633-23212652 | None:intergenic | 45.0% | |
| GGCTACCATGGTTTGAATTG+AGG | - | chr7.4:23213697-23213716 | MS.gene72424:CDS | 45.0% | |
| GGCTTCCTGCAAAGAATTGA+TGG | - | chr7.4:23212139-23212158 | MS.gene72424:CDS | 45.0% | |
| GTGGAAGTTAGAGTAAGGGA+AGG | - | chr7.4:23213249-23213268 | MS.gene72424:intron | 45.0% | |
| GTTTGAGTGAAGCTTGCAAC+CGG | + | chr7.4:23213438-23213457 | None:intergenic | 45.0% | |
| TCTTAGCAGCAATGCAGAGA+AGG | - | chr7.4:23213625-23213644 | MS.gene72424:CDS | 45.0% | |
| TGAAAGCTTGCACTTGCAGA+AGG | + | chr7.4:23212929-23212948 | None:intergenic | 45.0% | |
| ! | AGATCCTCTTTGACTCGACA+GGG | + | chr7.4:23212980-23212999 | None:intergenic | 45.0% |
| ! | ATGTTTTGTACTCGCAGACC+AGG | - | chr7.4:23213291-23213310 | MS.gene72424:intron | 45.0% |
| ! | GCAAAGAATTGATGGCTGAG+AGG | - | chr7.4:23212147-23212166 | MS.gene72424:CDS | 45.0% |
| ! | GGTTGATGTAGCCTTAATCG+CGG | - | chr7.4:23212393-23212412 | MS.gene72424:intron | 45.0% |
| ! | TAGATCCTCTTTGACTCGAC+AGG | + | chr7.4:23212981-23213000 | None:intergenic | 45.0% |
| !! | ATGAGGGCTTTGGATAACCT+TGG | - | chr7.4:23213330-23213349 | MS.gene72424:intron | 45.0% |
| !! | GCACTGCTTTAATTTGCTCG+GGG | + | chr7.4:23213663-23213682 | None:intergenic | 45.0% |
| !! | GGCTTTGGATAACCTTGGAT+TGG | - | chr7.4:23213335-23213354 | MS.gene72424:intron | 45.0% |
| !!! | CCTTGGGAGATTGGTTTTTG+GGG | + | chr7.4:23213024-23213043 | None:intergenic | 45.0% |
| CCCCAAAAACCAATCTCCCA+AGG | - | chr7.4:23213021-23213040 | MS.gene72424:CDS | 50.0% | |
| CCTGCTGAACATCCAATCCA+AGG | + | chr7.4:23213350-23213369 | None:intergenic | 50.0% | |
| GAACTGGAATCAACTCCACC+TGG | - | chr7.4:23212890-23212909 | MS.gene72424:CDS | 50.0% | |
| GCTATCTACCATGAGGGCTT+TGG | - | chr7.4:23213320-23213339 | MS.gene72424:intron | 50.0% | |
| TCTTCCCTGTCGAGTCAAAG+AGG | - | chr7.4:23212973-23212992 | MS.gene72424:CDS | 50.0% | |
| ! | AGCAGTGCTGTTGGATTCAG+CGG | - | chr7.4:23213675-23213694 | MS.gene72424:CDS | 50.0% |
| ! | CCTTGGATTGGATGTTCAGC+AGG | - | chr7.4:23213347-23213366 | MS.gene72424:intron | 50.0% |
| ! | TTGACTCGACAGGGAAGAGT+CGG | + | chr7.4:23212971-23212990 | None:intergenic | 50.0% |
| ! | TTTGGGGCTTAGCAAGTCAC+CGG | + | chr7.4:23213008-23213027 | None:intergenic | 50.0% |
| ACTTGAAGGAGCTGCTGCAG+CGG | - | chr7.4:23212849-23212868 | MS.gene72424:CDS | 55.0% | |
| TTGGGGCTTAGCAAGTCACC+GGG | + | chr7.4:23213007-23213026 | None:intergenic | 55.0% | |
| ! | AATTGATGGCTGAGAGGCGC+CGG | - | chr7.4:23212153-23212172 | MS.gene72424:CDS | 55.0% |
| ! | GCAGTGCTGTTGGATTCAGC+GGG | - | chr7.4:23213676-23213695 | MS.gene72424:CDS | 55.0% |
| ! | TTTGCTCGGGGAGTACATCC+TGG | + | chr7.4:23213651-23213670 | None:intergenic | 55.0% |
| !! | TTGGATTCAGCGGGCTACCA+TGG | - | chr7.4:23213685-23213704 | MS.gene72424:CDS | 55.0% |
| ACAGGGAAGAGTCGGTGGAG+TGG | + | chr7.4:23212963-23212982 | None:intergenic | 60.0% | |
| ACTCGACAGGGAAGAGTCGG+TGG | + | chr7.4:23212968-23212987 | None:intergenic | 60.0% | |
| CAGGGAAGAGTCGGTGGAGT+GGG | + | chr7.4:23212962-23212981 | None:intergenic | 60.0% | |
| GAAGGTTGCAGCAGTGAGCC+AGG | + | chr7.4:23212911-23212930 | None:intergenic | 60.0% | |
| GCAGCAATGCAGAGAAGGCC+AGG | - | chr7.4:23213630-23213649 | MS.gene72424:CDS | 60.0% | |
| GTCGGTGGAGTGGGTGTCAA+CGG | + | chr7.4:23212953-23212972 | None:intergenic | 60.0% | |
| TCGGTGGAGTGGGTGTCAAC+GGG | + | chr7.4:23212952-23212971 | None:intergenic | 60.0% | |
| GGTTGCAGCAGTGAGCCAGG+TGG | + | chr7.4:23212908-23212927 | None:intergenic | 65.0% | |
| !! | TGATGGCTGAGAGGCGCCGG+AGG | - | chr7.4:23212156-23212175 | MS.gene72424:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 23212138 | 23213717 | 23212138 | ID=MS.gene72424 |
| chr7.4 | mRNA | 23212138 | 23213717 | 23212138 | ID=MS.gene72424.t1;Parent=MS.gene72424 |
| chr7.4 | exon | 23213620 | 23213717 | 23213620 | ID=MS.gene72424.t1.exon1;Parent=MS.gene72424.t1 |
| chr7.4 | CDS | 23213620 | 23213717 | 23213620 | ID=cds.MS.gene72424.t1;Parent=MS.gene72424.t1 |
| chr7.4 | exon | 23212813 | 23213043 | 23212813 | ID=MS.gene72424.t1.exon2;Parent=MS.gene72424.t1 |
| chr7.4 | CDS | 23212813 | 23213043 | 23212813 | ID=cds.MS.gene72424.t1;Parent=MS.gene72424.t1 |
| chr7.4 | exon | 23212436 | 23212606 | 23212436 | ID=MS.gene72424.t1.exon3;Parent=MS.gene72424.t1 |
| chr7.4 | CDS | 23212436 | 23212606 | 23212436 | ID=cds.MS.gene72424.t1;Parent=MS.gene72424.t1 |
| chr7.4 | exon | 23212138 | 23212224 | 23212138 | ID=MS.gene72424.t1.exon4;Parent=MS.gene72424.t1 |
| chr7.4 | CDS | 23212138 | 23212224 | 23212138 | ID=cds.MS.gene72424.t1;Parent=MS.gene72424.t1 |
| Gene Sequence |
| Protein sequence |
