Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75616.t1 | AFK34697.1 | 96.9 | 192 | 6 | 0 | 1 | 192 | 1 | 192 | 3.40E-86 | 327.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75616.t1 | Q9C7F7 | 56.4 | 110 | 48 | 0 | 28 | 137 | 31 | 140 | 4.1e-32 | 139.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75616.t1 | I3S355 | 96.9 | 192 | 6 | 0 | 1 | 192 | 1 | 192 | 2.4e-86 | 327.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049217 | MS.gene75616 | 0.806244 | 9.04E-50 | -1.69E-46 |
| MS.gene049285 | MS.gene75616 | 0.801499 | 8.75E-49 | -1.69E-46 |
| MS.gene049614 | MS.gene75616 | 0.822672 | 2.09E-53 | -1.69E-46 |
| MS.gene049828 | MS.gene75616 | 0.813037 | 3.14E-51 | -1.69E-46 |
| MS.gene049907 | MS.gene75616 | 0.842059 | 3.26E-58 | -1.69E-46 |
| MS.gene050432 | MS.gene75616 | 0.809413 | 1.92E-50 | -1.69E-46 |
| MS.gene050520 | MS.gene75616 | 0.82749 | 1.52E-54 | -1.69E-46 |
| MS.gene050581 | MS.gene75616 | 0.838284 | 3.15E-57 | -1.69E-46 |
| MS.gene050767 | MS.gene75616 | 0.871407 | 7.00E-67 | -1.69E-46 |
| MS.gene050770 | MS.gene75616 | 0.871155 | 8.48E-67 | -1.69E-46 |
| MS.gene05101 | MS.gene75616 | 0.808696 | 2.73E-50 | -1.69E-46 |
| MS.gene051228 | MS.gene75616 | 0.832279 | 1.03E-55 | -1.69E-46 |
| MS.gene051255 | MS.gene75616 | 0.805694 | 1.18E-49 | -1.69E-46 |
| MS.gene051692 | MS.gene75616 | 0.805878 | 1.08E-49 | -1.69E-46 |
| MS.gene051810 | MS.gene75616 | 0.807786 | 4.26E-50 | -1.69E-46 |
| MS.gene052271 | MS.gene75616 | 0.869226 | 3.63E-66 | -1.69E-46 |
| MS.gene052290 | MS.gene75616 | 0.804558 | 2.04E-49 | -1.69E-46 |
| MS.gene052379 | MS.gene75616 | 0.824924 | 6.20E-54 | -1.69E-46 |
| MS.gene053009 | MS.gene75616 | 0.828761 | 7.51E-55 | -1.69E-46 |
| MS.gene053104 | MS.gene75616 | 0.803759 | 2.99E-49 | -1.69E-46 |
| MS.gene053207 | MS.gene75616 | 0.80456 | 2.04E-49 | -1.69E-46 |
| MS.gene053322 | MS.gene75616 | 0.843195 | 1.63E-58 | -1.69E-46 |
| MS.gene053813 | MS.gene75616 | 0.84707 | 1.46E-59 | -1.69E-46 |
| MS.gene054376 | MS.gene75616 | 0.862779 | 3.98E-64 | -1.69E-46 |
| MS.gene054642 | MS.gene75616 | 0.809454 | 1.88E-50 | -1.69E-46 |
| MS.gene054802 | MS.gene75616 | 0.815188 | 1.05E-51 | -1.69E-46 |
| MS.gene054803 | MS.gene75616 | 0.81506 | 1.12E-51 | -1.69E-46 |
| MS.gene054804 | MS.gene75616 | 0.818619 | 1.78E-52 | -1.69E-46 |
| MS.gene05492 | MS.gene75616 | 0.806216 | 9.16E-50 | -1.69E-46 |
| MS.gene055254 | MS.gene75616 | 0.805919 | 1.06E-49 | -1.69E-46 |
| MS.gene055397 | MS.gene75616 | 0.807429 | 5.08E-50 | -1.69E-46 |
| MS.gene055499 | MS.gene75616 | 0.827416 | 1.58E-54 | -1.69E-46 |
| MS.gene055636 | MS.gene75616 | 0.884163 | 2.43E-71 | -1.69E-46 |
| MS.gene055638 | MS.gene75616 | 0.842485 | 2.51E-58 | -1.69E-46 |
| MS.gene055647 | MS.gene75616 | 0.876853 | 1.00E-68 | -1.69E-46 |
| MS.gene055722 | MS.gene75616 | 0.821685 | 3.54E-53 | -1.69E-46 |
| MS.gene05592 | MS.gene75616 | 0.865149 | 7.28E-65 | -1.69E-46 |
| MS.gene056374 | MS.gene75616 | 0.843293 | 1.53E-58 | -1.69E-46 |
| MS.gene056410 | MS.gene75616 | 0.833953 | 3.97E-56 | -1.69E-46 |
| MS.gene056611 | MS.gene75616 | 0.826407 | 2.76E-54 | -1.69E-46 |
| MS.gene056794 | MS.gene75616 | 0.814679 | 1.36E-51 | -1.69E-46 |
| MS.gene056931 | MS.gene75616 | 0.815197 | 1.05E-51 | -1.69E-46 |
| MS.gene056933 | MS.gene75616 | 0.809348 | 1.98E-50 | -1.69E-46 |
| MS.gene056935 | MS.gene75616 | 0.809368 | 1.96E-50 | -1.69E-46 |
| MS.gene057011 | MS.gene75616 | 0.808647 | 2.79E-50 | -1.69E-46 |
| MS.gene057129 | MS.gene75616 | 0.841964 | 3.45E-58 | -1.69E-46 |
| MS.gene057285 | MS.gene75616 | 0.848195 | 7.15E-60 | -1.69E-46 |
| MS.gene057331 | MS.gene75616 | 0.841291 | 5.19E-58 | -1.69E-46 |
| MS.gene057416 | MS.gene75616 | 0.821136 | 4.74E-53 | -1.69E-46 |
| MS.gene058293 | MS.gene75616 | 0.810735 | 9.94E-51 | -1.69E-46 |
| MS.gene058323 | MS.gene75616 | 0.817856 | 2.65E-52 | -1.69E-46 |
| MS.gene058459 | MS.gene75616 | 0.821541 | 3.82E-53 | -1.69E-46 |
| MS.gene058773 | MS.gene75616 | 0.81754 | 3.13E-52 | -1.69E-46 |
| MS.gene058903 | MS.gene75616 | 0.874805 | 5.07E-68 | -1.69E-46 |
| MS.gene059029 | MS.gene75616 | 0.804678 | 1.93E-49 | -1.69E-46 |
| MS.gene059530 | MS.gene75616 | 0.812783 | 3.56E-51 | -1.69E-46 |
| MS.gene059536 | MS.gene75616 | 0.809651 | 1.70E-50 | -1.69E-46 |
| MS.gene059676 | MS.gene75616 | 0.81462 | 1.40E-51 | -1.69E-46 |
| MS.gene059711 | MS.gene75616 | 0.83888 | 2.21E-57 | -1.69E-46 |
| MS.gene059960 | MS.gene75616 | 0.835192 | 1.94E-56 | -1.69E-46 |
| MS.gene059974 | MS.gene75616 | 0.849098 | 4.02E-60 | -1.69E-46 |
| MS.gene060005 | MS.gene75616 | 0.854565 | 1.13E-61 | -1.69E-46 |
| MS.gene060193 | MS.gene75616 | 0.800177 | 1.63E-48 | -1.69E-46 |
| MS.gene060356 | MS.gene75616 | 0.860826 | 1.58E-63 | -1.69E-46 |
| MS.gene060799 | MS.gene75616 | 0.871999 | 4.45E-67 | -1.69E-46 |
| MS.gene060800 | MS.gene75616 | 0.84882 | 4.80E-60 | -1.69E-46 |
| MS.gene060801 | MS.gene75616 | 0.876373 | 1.47E-68 | -1.69E-46 |
| MS.gene060818 | MS.gene75616 | 0.81777 | 2.78E-52 | -1.69E-46 |
| MS.gene060837 | MS.gene75616 | 0.808387 | 3.18E-50 | -1.69E-46 |
| MS.gene061134 | MS.gene75616 | 0.805335 | 1.40E-49 | -1.69E-46 |
| MS.gene061200 | MS.gene75616 | 0.864463 | 1.19E-64 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75616.t1 | MTR_3g085210 | 96.875 | 192 | 6 | 0 | 1 | 192 | 1 | 192 | 1.17e-135 | 377 |
| MS.gene75616.t1 | MTR_8g446830 | 32.450 | 151 | 90 | 5 | 9 | 151 | 12 | 158 | 7.33e-16 | 72.4 |
| MS.gene75616.t1 | MTR_7g095230 | 28.070 | 114 | 79 | 2 | 1 | 114 | 1 | 111 | 5.00e-12 | 62.0 |
| MS.gene75616.t1 | MTR_5g006950 | 28.125 | 192 | 113 | 7 | 1 | 191 | 1 | 168 | 5.13e-12 | 61.6 |
| MS.gene75616.t1 | MTR_1g103450 | 35.714 | 84 | 49 | 1 | 30 | 113 | 26 | 104 | 7.72e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75616.t1 | AT1G27950 | 49.020 | 153 | 71 | 3 | 31 | 183 | 34 | 179 | 1.77e-42 | 141 |
| MS.gene75616.t1 | AT2G44290 | 34.395 | 157 | 91 | 7 | 10 | 161 | 13 | 162 | 4.86e-18 | 78.6 |
| MS.gene75616.t1 | AT2G44300 | 34.615 | 130 | 72 | 6 | 42 | 164 | 45 | 168 | 1.74e-14 | 68.9 |
| MS.gene75616.t1 | AT1G55260 | 26.829 | 164 | 100 | 6 | 1 | 159 | 44 | 192 | 5.99e-13 | 65.5 |
| MS.gene75616.t1 | AT1G55260 | 26.829 | 164 | 103 | 6 | 1 | 159 | 44 | 195 | 9.72e-13 | 64.7 |
Find 47 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATACCCATGCTCTTGCTTTC+AGG | 0.112193 | 3.3:+71210776 | None:intergenic |
| GCATCACAGCATTCCTTCTT+TGG | 0.234849 | 3.3:+71210869 | None:intergenic |
| AAGCAAGAGCATGGGTATTC+AGG | 0.320822 | 3.3:-71210771 | MS.gene75616:CDS |
| CCATGTCTGGACTTTGCAAC+TGG | 0.330521 | 3.3:-71210905 | MS.gene75616:CDS |
| GTTTATGTGTCTGTGTGTTT+TGG | 0.332428 | 3.3:-71211002 | MS.gene75616:CDS |
| CTCTAATGGAGCTGAAGATT+TGG | 0.343257 | 3.3:-71210963 | MS.gene75616:CDS |
| CTTGCCGAGGTCGGAGTTGT+AGG | 0.376495 | 3.3:+71207008 | None:intergenic |
| CTCATCATAGGTGGCTCTAA+TGG | 0.381692 | 3.3:-71210977 | MS.gene75616:CDS |
| TGTTGATCATGACAGGTCTA+AGG | 0.387679 | 3.3:+71206967 | None:intergenic |
| TACCCATGCTCTTGCTTTCA+GGG | 0.394358 | 3.3:+71210777 | None:intergenic |
| ACATAAACATTTGATGTTGT+TGG | 0.404273 | 3.3:+71211017 | None:intergenic |
| GGTATGGTGACAGAGCTTCT+TGG | 0.409463 | 3.3:-71207122 | MS.gene75616:intron |
| CAACGTGATAACGGTGACTT+TGG | 0.415623 | 3.3:-71206946 | MS.gene75616:CDS |
| GTTCTTGCTGCAGTACCTGC+TGG | 0.431862 | 3.3:-71206918 | MS.gene75616:CDS |
| TATCATTCAACAGACTCATA+AGG | 0.436377 | 3.3:-71210804 | MS.gene75616:CDS |
| TTATCAGCATTTATACATGA+TGG | 0.456328 | 3.3:-71206893 | None:intergenic |
| ATCATTCAACAGACTCATAA+GGG | 0.476714 | 3.3:-71210803 | MS.gene75616:CDS |
| CAGCATTCCTTCTTTGGTGT+AGG | 0.481891 | 3.3:+71210875 | None:intergenic |
| ATCACGTTGTTGATCATGAC+AGG | 0.490311 | 3.3:+71206960 | None:intergenic |
| CCAGTTGCAAAGTCCAGACA+TGG | 0.534963 | 3.3:+71210905 | None:intergenic |
| CATGATCAACAACGTGATAA+CGG | 0.539145 | 3.3:-71206955 | MS.gene75616:CDS |
| GGCTTCAAAGTGTGGATCAG+TGG | 0.542878 | 3.3:-71210942 | MS.gene75616:CDS |
| GAAGATTTGGCTTCAAAGTG+TGG | 0.543294 | 3.3:-71210950 | MS.gene75616:CDS |
| CATGTCTGGACTTTGCAACT+GGG | 0.544788 | 3.3:-71210904 | MS.gene75616:CDS |
| GAAAGCACCTACACCAAAGA+AGG | 0.545842 | 3.3:-71210882 | MS.gene75616:CDS |
| GTAGTTGCAGCAGCTGATGA+AGG | 0.549439 | 3.3:+71207038 | None:intergenic |
| CCACCTGTGCTTGCCGAGGT+CGG | 0.550705 | 3.3:+71206999 | None:intergenic |
| ACTGGGACAGTCGGAAATGT+TGG | 0.550714 | 3.3:+71210703 | None:intergenic |
| ATGATATAGCACAAACACTC+TGG | 0.553006 | 3.3:+71210821 | None:intergenic |
| AACTCCTACAACTCCGACCT+CGG | 0.556736 | 3.3:-71207012 | MS.gene75616:CDS |
| ACTCCGACCTCGGCAAGCAC+AGG | 0.560509 | 3.3:-71207002 | MS.gene75616:CDS |
| ATTAAACTTACTGGGACAGT+CGG | 0.571110 | 3.3:+71210694 | None:intergenic |
| TAGCCCTGAAAGCAAGAGCA+TGG | 0.574374 | 3.3:-71210780 | MS.gene75616:CDS |
| TGATGCAGCTAACAGTATCA+AGG | 0.574408 | 3.3:-71210852 | MS.gene75616:CDS |
| CCGACCTCGGCAAGCACAGG+TGG | 0.579084 | 3.3:-71206999 | MS.gene75616:CDS |
| CCGTTGACGTGACAAACAGT+AGG | 0.581377 | 3.3:+71210728 | None:intergenic |
| GCAGCAGCTGATGAAGGAGT+AGG | 0.585517 | 3.3:+71207044 | None:intergenic |
| TTTAAAGATTGCAGCGTCGG+GGG | 0.597687 | 3.3:+71207085 | None:intergenic |
| AGCTAACAGTATCAAGGCAA+CGG | 0.604523 | 3.3:-71210846 | MS.gene75616:CDS |
| TAAATGCTGATAAATCCAGC+AGG | 0.610193 | 3.3:+71206903 | None:intergenic |
| AGCCCTGAAAGCAAGAGCAT+GGG | 0.629636 | 3.3:-71210779 | MS.gene75616:CDS |
| GATCATGACAGGTCTAAGGT+TGG | 0.632709 | 3.3:+71206971 | None:intergenic |
| TGAACCACCTGTGCTTGCCG+AGG | 0.642075 | 3.3:+71206995 | None:intergenic |
| GGTCGGAGTTGTAGGAGTTG+CGG | 0.642214 | 3.3:+71207016 | None:intergenic |
| CGTTGACGTGACAAACAGTA+GGG | 0.644084 | 3.3:+71210729 | None:intergenic |
| AGGTACTGCAGCAAGAACAA+TGG | 0.653525 | 3.3:+71206923 | None:intergenic |
| CCTACTGTTTGTCACGTCAA+CGG | 0.678772 | 3.3:-71210728 | MS.gene75616:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAATAAATGTATTTGAA+TGG | + | chr3.3:71208066-71208085 | None:intergenic | 10.0% |
| !! | TATATACTATATAAAAATGT+TGG | + | chr3.3:71209740-71209759 | None:intergenic | 10.0% |
| !! | TTATATAGTATATAAAACAA+GGG | - | chr3.3:71209746-71209765 | MS.gene75616:intron | 10.0% |
| !! | TTTATATAGTATATAAAACA+AGG | - | chr3.3:71209745-71209764 | MS.gene75616:intron | 10.0% |
| !! | AAAGAATCAAAGTATATATT+GGG | + | chr3.3:71210288-71210307 | None:intergenic | 15.0% |
| !! | ACATATAATAACATGAATAT+TGG | - | chr3.3:71210778-71210797 | MS.gene75616:CDS | 15.0% |
| !! | ATATATGACATTAATTTATC+AGG | + | chr3.3:71207305-71207324 | None:intergenic | 15.0% |
| !! | ATTTAATAAAATAAGGTTAC+TGG | + | chr3.3:71207943-71207962 | None:intergenic | 15.0% |
| !! | CATATATTTAACATAATGAA+AGG | + | chr3.3:71210397-71210416 | None:intergenic | 15.0% |
| !! | TTTGTTTATAAGAAAAACTT+TGG | + | chr3.3:71208093-71208112 | None:intergenic | 15.0% |
| !!! | AATTTTTAACATAGGTTTTA+AGG | - | chr3.3:71209848-71209867 | MS.gene75616:intron | 15.0% |
| !!! | AGAGTTTTCTAATAAATTAT+GGG | - | chr3.3:71209162-71209181 | MS.gene75616:intron | 15.0% |
| !!! | ATTAGTGTATAATCATTTTT+TGG | - | chr3.3:71210178-71210197 | MS.gene75616:intron | 15.0% |
| !!! | CTTATTATATTTGATTTTTC+CGG | - | chr3.3:71207831-71207850 | MS.gene75616:intron | 15.0% |
| !!! | GAAAAGATAATTTTTAACAT+AGG | - | chr3.3:71209840-71209859 | MS.gene75616:intron | 15.0% |
| !!! | TAGAGTTTTCTAATAAATTA+TGG | - | chr3.3:71209161-71209180 | MS.gene75616:intron | 15.0% |
| !!! | TTTGGGTTAATTTAAAAAAA+AGG | - | chr3.3:71210467-71210486 | MS.gene75616:intron | 15.0% |
| !!! | TTTTTTGACTAAATAAAATG+TGG | + | chr3.3:71208241-71208260 | None:intergenic | 15.0% |
| !!! | TTTTTTTTGTTACACAATAA+TGG | - | chr3.3:71207397-71207416 | MS.gene75616:intron | 15.0% |
| !! | AAAACTTATGTTAAAGTTTG+TGG | - | chr3.3:71208556-71208575 | MS.gene75616:intron | 20.0% |
| !! | AAAGGAAAAATTAAACTTAC+TGG | + | chr3.3:71207239-71207258 | None:intergenic | 20.0% |
| !! | AAGGAAAAATTAAACTTACT+GGG | + | chr3.3:71207238-71207257 | None:intergenic | 20.0% |
| !! | AATATTCCATCAATTATTCT+TGG | - | chr3.3:71210444-71210463 | MS.gene75616:intron | 20.0% |
| !! | ATGCATGATATTATACATAT+TGG | - | chr3.3:71207323-71207342 | MS.gene75616:intron | 20.0% |
| !! | ATTAAGATGATAAAAGTTTG+TGG | + | chr3.3:71210160-71210179 | None:intergenic | 20.0% |
| !! | ATTTATTAGAAAACTCTAAC+CGG | + | chr3.3:71209159-71209178 | None:intergenic | 20.0% |
| !! | CTATTACATAAAACTATGAT+AGG | - | chr3.3:71207483-71207502 | MS.gene75616:intron | 20.0% |
| !! | GAAAGAATCAAAGTATATAT+TGG | + | chr3.3:71210289-71210308 | None:intergenic | 20.0% |
| !! | GATTTCTGACATATAATTTA+TGG | + | chr3.3:71209358-71209377 | None:intergenic | 20.0% |
| !! | TAATAACATGAATATTGGTA+TGG | - | chr3.3:71210783-71210802 | MS.gene75616:CDS | 20.0% |
| !! | TAATTGCGCAAAATTAATTA+AGG | - | chr3.3:71209124-71209143 | MS.gene75616:intron | 20.0% |
| !! | TAGCAATTAACGATAAAAAA+AGG | + | chr3.3:71207257-71207276 | None:intergenic | 20.0% |
| !! | TGCATGATATTATACATATT+GGG | - | chr3.3:71207324-71207343 | MS.gene75616:intron | 20.0% |
| !! | TTAAGATGATAAAAGTTTGT+GGG | + | chr3.3:71210159-71210178 | None:intergenic | 20.0% |
| !! | TTAATGAGATCATTAAGTAA+AGG | + | chr3.3:71209478-71209497 | None:intergenic | 20.0% |
| !!! | AAAGTTTTAATCAACTCAAA+AGG | + | chr3.3:71210688-71210707 | None:intergenic | 20.0% |
| !!! | AAGACATAGTTTCTTTTTTT+GGG | + | chr3.3:71209226-71209245 | None:intergenic | 20.0% |
| !!! | ATATCTAATTATCTCTTTTG+TGG | - | chr3.3:71207961-71207980 | MS.gene75616:intron | 20.0% |
| !!! | ATGGAGTATTAATTTTACAT+TGG | - | chr3.3:71209583-71209602 | MS.gene75616:intron | 20.0% |
| !!! | CAAAAGGCAATATTTTTTTT+AGG | + | chr3.3:71210672-71210691 | None:intergenic | 20.0% |
| !!! | CTATGATAAACTTCTAATTT+TGG | + | chr3.3:71210532-71210551 | None:intergenic | 20.0% |
| !!! | TGTAATTTTAGAAACATGAT+AGG | - | chr3.3:71209090-71209109 | MS.gene75616:intron | 20.0% |
| !!! | TTATGGATGATAGTTTTAAA+AGG | + | chr3.3:71210732-71210751 | None:intergenic | 20.0% |
| ! | ACAATAATGGTTCCAATTTA+CGG | - | chr3.3:71207410-71207429 | MS.gene75616:intron | 25.0% |
| ! | ACATAAACATTTGATGTTGT+TGG | + | chr3.3:71206907-71206926 | None:intergenic | 25.0% |
| ! | ATTGTTTAAGCATCTAAAAG+TGG | + | chr3.3:71209309-71209328 | None:intergenic | 25.0% |
| ! | CCTAGAAAAGAAAAGAAAAT+TGG | + | chr3.3:71209034-71209053 | None:intergenic | 25.0% |
| ! | GTTTATTGCATATTTGATGT+CGG | - | chr3.3:71207674-71207693 | MS.gene75616:intron | 25.0% |
| ! | TAAGATGATAAAAGTTTGTG+GGG | + | chr3.3:71210158-71210177 | None:intergenic | 25.0% |
| ! | TAGACTTATATCACAATTTC+AGG | - | chr3.3:71207536-71207555 | MS.gene75616:intron | 25.0% |
| ! | TGTCATTAGCAACTTTATTA+TGG | + | chr3.3:71210749-71210768 | None:intergenic | 25.0% |
| ! | TTGCGATAACTATTATAGAT+GGG | - | chr3.3:71208842-71208861 | MS.gene75616:intron | 25.0% |
| ! | TTTAACAAACCGTAATGTTT+GGG | - | chr3.3:71207757-71207776 | MS.gene75616:intron | 25.0% |
| !! | AACATTTAAGACATTGTTGT+TGG | + | chr3.3:71209436-71209455 | None:intergenic | 25.0% |
| !! | ACTACAAATGACACTATTTT+TGG | - | chr3.3:71208798-71208817 | MS.gene75616:intron | 25.0% |
| !! | CAATCTTTAAAAATGCTTCA+AGG | - | chr3.3:71210848-71210867 | MS.gene75616:CDS | 25.0% |
| !! | CCAATTTTCTTTTCTTTTCT+AGG | - | chr3.3:71209031-71209050 | MS.gene75616:intron | 25.0% |
| !! | CTAATATATGCTCTAAATGT+TGG | + | chr3.3:71209711-71209730 | None:intergenic | 25.0% |
| !! | CTCTTTTAAATAAAATCCGA+GGG | + | chr3.3:71208017-71208036 | None:intergenic | 25.0% |
| !! | GTATAGGAGTATAAACATAA+GGG | + | chr3.3:71208156-71208175 | None:intergenic | 25.0% |
| !! | TCTCTTTTAAATAAAATCCG+AGG | + | chr3.3:71208018-71208037 | None:intergenic | 25.0% |
| !! | TGTATAGGAGTATAAACATA+AGG | + | chr3.3:71208157-71208176 | None:intergenic | 25.0% |
| !! | TTTTAACAAACCGTAATGTT+TGG | - | chr3.3:71207756-71207775 | MS.gene75616:intron | 25.0% |
| !! | TTTTTGCATTGGAAATTGTA+CGG | + | chr3.3:71209283-71209302 | None:intergenic | 25.0% |
| !!! | AAAAGCTAACTTGTGTTTTT+AGG | - | chr3.3:71209769-71209788 | MS.gene75616:intron | 25.0% |
| !!! | AAAGCTAACTTGTGTTTTTA+GGG | - | chr3.3:71209770-71209789 | MS.gene75616:intron | 25.0% |
| !!! | CAAGACATAGTTTCTTTTTT+TGG | + | chr3.3:71209227-71209246 | None:intergenic | 25.0% |
| !!! | TTGGTAGATATTTTTGTTGT+TGG | - | chr3.3:71208817-71208836 | MS.gene75616:intron | 25.0% |
| AACAAATCACTCACACTAAA+TGG | - | chr3.3:71209940-71209959 | MS.gene75616:intron | 30.0% | |
| AATGACCTGTCATCTATATT+GGG | - | chr3.3:71208886-71208905 | MS.gene75616:intron | 30.0% | |
| ATATGCATGAAACCGTAAAT+TGG | + | chr3.3:71207425-71207444 | None:intergenic | 30.0% | |
| ATCATTCAACAGACTCATAA+GGG | - | chr3.3:71207118-71207137 | MS.gene75616:intron | 30.0% | |
| ATTCTCTAACATGCATTCTT+AGG | + | chr3.3:71209559-71209578 | None:intergenic | 30.0% | |
| ATTGATATGCGAACTAATGA+AGG | + | chr3.3:71208998-71209017 | None:intergenic | 30.0% | |
| CCATCAATTATTCTTGGTTT+GGG | - | chr3.3:71210450-71210469 | MS.gene75616:intron | 30.0% | |
| GTCAGAAATCTTATGTATAG+AGG | - | chr3.3:71209368-71209387 | MS.gene75616:intron | 30.0% | |
| GTTGCGATAACTATTATAGA+TGG | - | chr3.3:71208841-71208860 | MS.gene75616:intron | 30.0% | |
| TATAAATACCCAACTCATTC+TGG | - | chr3.3:71210371-71210390 | MS.gene75616:intron | 30.0% | |
| TATCATTCAACAGACTCATA+AGG | - | chr3.3:71207117-71207136 | MS.gene75616:intron | 30.0% | |
| TCCATCAATTATTCTTGGTT+TGG | - | chr3.3:71210449-71210468 | MS.gene75616:intron | 30.0% | |
| TCTTATGTATAGAGGAACAA+AGG | - | chr3.3:71209376-71209395 | MS.gene75616:intron | 30.0% | |
| TGCATGTTAGAGAATTCAAA+TGG | - | chr3.3:71209564-71209583 | MS.gene75616:intron | 30.0% | |
| TGCGATAACTATTATAGATG+GGG | - | chr3.3:71208843-71208862 | MS.gene75616:intron | 30.0% | |
| TTCCTTAAACAATGTCCTTA+GGG | + | chr3.3:71209203-71209222 | None:intergenic | 30.0% | |
| TTGTTCACTAAAATTGACAC+CGG | + | chr3.3:71207853-71207872 | None:intergenic | 30.0% | |
| ! | AAAAGTGGCAATTTTTGCAT+TGG | + | chr3.3:71209294-71209313 | None:intergenic | 30.0% |
| ! | CTTGTTATCTTGTGTCTTAA+GGG | - | chr3.3:71210491-71210510 | MS.gene75616:intron | 30.0% |
| ! | TCTAATTATCTCTTTTGTGG+TGG | - | chr3.3:71207964-71207983 | MS.gene75616:intron | 30.0% |
| ! | TCTTGTTATCTTGTGTCTTA+AGG | - | chr3.3:71210490-71210509 | MS.gene75616:intron | 30.0% |
| ! | TTACAAAAGTACAGTTTGTC+CGG | + | chr3.3:71208196-71208215 | None:intergenic | 30.0% |
| ! | TTTCCCTTTCTGACATTTTT+AGG | - | chr3.3:71208317-71208336 | MS.gene75616:intron | 30.0% |
| !! | ATTTTTAAAGATTGCAGCGT+CGG | + | chr3.3:71210842-71210861 | None:intergenic | 30.0% |
| !! | CTATCATATACGTTTGTTGT+CGG | + | chr3.3:71207572-71207591 | None:intergenic | 30.0% |
| !!! | AGTGTGAGTGATTTGTTTTA+CGG | + | chr3.3:71209937-71209956 | None:intergenic | 30.0% |
| AAATATTAACATGTGCCCCA+AGG | + | chr3.3:71210648-71210667 | None:intergenic | 35.0% | |
| AAATGTCAGAAAGGGAAAAG+AGG | + | chr3.3:71208315-71208334 | None:intergenic | 35.0% | |
| AATATTAACATGTGCCCCAA+GGG | + | chr3.3:71210647-71210666 | None:intergenic | 35.0% | |
| AGGCCTAAAAATGTCAGAAA+GGG | + | chr3.3:71208323-71208342 | None:intergenic | 35.0% | |
| ATAACTCTATGCGTGTGTAT+AGG | + | chr3.3:71208172-71208191 | None:intergenic | 35.0% | |
| ATGATATAGCACAAACACTC+TGG | + | chr3.3:71207103-71207122 | None:intergenic | 35.0% | |
| ATGCTTAAACAATGCCCTTA+GGG | - | chr3.3:71209316-71209335 | MS.gene75616:intron | 35.0% | |
| ATTAAACTTACTGGGACAGT+CGG | + | chr3.3:71207230-71207249 | None:intergenic | 35.0% | |
| ATTATCTCTAAACACTCCCT+CGG | - | chr3.3:71207998-71208017 | MS.gene75616:intron | 35.0% | |
| ATTTAACCTGTCTAGATGCA+AGG | + | chr3.3:71208951-71208970 | None:intergenic | 35.0% | |
| CATGATCAACAACGTGATAA+CGG | - | chr3.3:71210966-71210985 | MS.gene75616:CDS | 35.0% | |
| CCCAAACCAAGAATAATTGA+TGG | + | chr3.3:71210453-71210472 | None:intergenic | 35.0% | |
| GAATGACCTGTCATCTATAT+TGG | - | chr3.3:71208885-71208904 | MS.gene75616:intron | 35.0% | |
| GTTCCTTAAACAATGTCCTT+AGG | + | chr3.3:71209204-71209223 | None:intergenic | 35.0% | |
| TAAATGCTGATAAATCCAGC+AGG | + | chr3.3:71211021-71211040 | None:intergenic | 35.0% | |
| TCAAAAAGTGATTCCATGTC+TGG | - | chr3.3:71207003-71207022 | MS.gene75616:CDS | 35.0% | |
| TGCATCTAGACAGGTTAAAT+GGG | - | chr3.3:71208951-71208970 | MS.gene75616:intron | 35.0% | |
| TGTTCTTAATCATCGACAAG+AGG | + | chr3.3:71208370-71208389 | None:intergenic | 35.0% | |
| TTAATTAAGGTCATGCTAGC+CGG | - | chr3.3:71209137-71209156 | MS.gene75616:intron | 35.0% | |
| TTGCATCTAGACAGGTTAAA+TGG | - | chr3.3:71208950-71208969 | MS.gene75616:intron | 35.0% | |
| ! | GTTTATGTGTCTGTGTGTTT+TGG | - | chr3.3:71206919-71206938 | MS.gene75616:CDS | 35.0% |
| ! | GTTTCTGCAATTTTCACAAG+AGG | + | chr3.3:71208343-71208362 | None:intergenic | 35.0% |
| ! | TACAAAAGTACAGTTTGTCC+GGG | + | chr3.3:71208195-71208214 | None:intergenic | 35.0% |
| ! | TGATCGACTTAGTTAGAGTA+CGG | + | chr3.3:71207596-71207615 | None:intergenic | 35.0% |
| !! | TTTTTAAAGATTGCAGCGTC+GGG | + | chr3.3:71210841-71210860 | None:intergenic | 35.0% |
| !!! | ACTTAGACTAGCTTCTTTTC+AGG | + | chr3.3:71210311-71210330 | None:intergenic | 35.0% |
| !!! | GTGTGAGTGATTTGTTTTAC+GGG | + | chr3.3:71209936-71209955 | None:intergenic | 35.0% |
| AAATGCTAACAAGTGCCCTA+AGG | + | chr3.3:71209334-71209353 | None:intergenic | 40.0% | |
| AATGAAAGGCCAGAATGAGT+TGG | + | chr3.3:71210383-71210402 | None:intergenic | 40.0% | |
| AATGCTAACAAGTGCCCTAA+GGG | + | chr3.3:71209333-71209352 | None:intergenic | 40.0% | |
| AATTCCTTAGCATATGCCCT+TGG | - | chr3.3:71210628-71210647 | MS.gene75616:intron | 40.0% | |
| ACCTGTCATCTATATTGGGT+GGG | - | chr3.3:71208890-71208909 | MS.gene75616:intron | 40.0% | |
| AGCAGCAGTAGTAGTATATG+TGG | - | chr3.3:71210418-71210437 | MS.gene75616:intron | 40.0% | |
| AGCTAACAGTATCAAGGCAA+CGG | - | chr3.3:71207075-71207094 | MS.gene75616:CDS | 40.0% | |
| ATCACGTTGTTGATCATGAC+AGG | + | chr3.3:71210964-71210983 | None:intergenic | 40.0% | |
| ATGAAAGGCCAGAATGAGTT+GGG | + | chr3.3:71210382-71210401 | None:intergenic | 40.0% | |
| ATGCGAACTAATGAAGGCAA+TGG | + | chr3.3:71208992-71209011 | None:intergenic | 40.0% | |
| ATTCCTTAGCATATGCCCTT+GGG | - | chr3.3:71210629-71210648 | MS.gene75616:intron | 40.0% | |
| CAGAAAGGGAAAAGAGGATA+TGG | + | chr3.3:71208309-71208328 | None:intergenic | 40.0% | |
| CCAACGCAAGAGAATATTGT+GGG | + | chr3.3:71208496-71208515 | None:intergenic | 40.0% | |
| CCACAATATTCTCTTGCGTT+GGG | - | chr3.3:71208494-71208513 | MS.gene75616:intron | 40.0% | |
| CTACACAAGCCCAAACATTA+CGG | + | chr3.3:71207769-71207788 | None:intergenic | 40.0% | |
| CTCTAATGGAGCTGAAGATT+TGG | - | chr3.3:71206958-71206977 | MS.gene75616:CDS | 40.0% | |
| GAGGCCTAAAAATGTCAGAA+AGG | + | chr3.3:71208324-71208343 | None:intergenic | 40.0% | |
| GATGCTTAAACAATGCCCTT+AGG | - | chr3.3:71209315-71209334 | MS.gene75616:intron | 40.0% | |
| GCAGCAGTAGTAGTATATGT+GGG | - | chr3.3:71210419-71210438 | MS.gene75616:intron | 40.0% | |
| GTGACCATTATTGTGAGAGA+GGG | + | chr3.3:71207371-71207390 | None:intergenic | 40.0% | |
| TATTGTGAGAGAGGGAGAAT+AGG | + | chr3.3:71207363-71207382 | None:intergenic | 40.0% | |
| TGACAGGTCATTCAAGATTG+AGG | + | chr3.3:71208878-71208897 | None:intergenic | 40.0% | |
| TGATGCAGCTAACAGTATCA+AGG | - | chr3.3:71207069-71207088 | MS.gene75616:CDS | 40.0% | |
| TGCCCTAAGGACATTGTTTA+AGG | - | chr3.3:71209198-71209217 | MS.gene75616:intron | 40.0% | |
| TGTGACCATTATTGTGAGAG+AGG | + | chr3.3:71207372-71207391 | None:intergenic | 40.0% | |
| TGTTGATCATGACAGGTCTA+AGG | + | chr3.3:71210957-71210976 | None:intergenic | 40.0% | |
| TTAATCATCGACAAGAGGCA+GGG | + | chr3.3:71208365-71208384 | None:intergenic | 40.0% | |
| TTCTCCCTCTCTCACAATAA+TGG | - | chr3.3:71207364-71207383 | MS.gene75616:intron | 40.0% | |
| ! | ACATAAGGGAAGCTACGTTT+TGG | + | chr3.3:71208142-71208161 | None:intergenic | 40.0% |
| ! | CTTTCGAACGATCGTCTTTT+GGG | - | chr3.3:71210066-71210085 | MS.gene75616:intron | 40.0% |
| ! | GAAGATTTGGCTTCAAAGTG+TGG | - | chr3.3:71206971-71206990 | MS.gene75616:CDS | 40.0% |
| ! | GATCGACTTAGTTAGAGTAC+GGG | + | chr3.3:71207595-71207614 | None:intergenic | 40.0% |
| ! | TCTTTCGAACGATCGTCTTT+TGG | - | chr3.3:71210065-71210084 | MS.gene75616:intron | 40.0% |
| ! | TGTCTTAAGGGCACAAGTTA+AGG | - | chr3.3:71210503-71210522 | MS.gene75616:intron | 40.0% |
| !! | TTTTAAAGATTGCAGCGTCG+GGG | + | chr3.3:71210840-71210859 | None:intergenic | 40.0% |
| !!! | CAGACTCAAGTTTTTTCACG+AGG | - | chr3.3:71209994-71210013 | MS.gene75616:intron | 40.0% |
| !!! | TGTGTTTTGGCTCTCATCAT+AGG | - | chr3.3:71206932-71206951 | MS.gene75616:CDS | 40.0% |
| ACACACGCATAGAGTTATCC+CGG | - | chr3.3:71208174-71208193 | MS.gene75616:intron | 45.0% | |
| ATACCCATGCTCTTGCTTTC+AGG | + | chr3.3:71207148-71207167 | None:intergenic | 45.0% | |
| CAATATTCTCTTGCGTTGGG+AGG | - | chr3.3:71208497-71208516 | MS.gene75616:intron | 45.0% | |
| CATGTCTGGACTTTGCAACT+GGG | - | chr3.3:71207017-71207036 | MS.gene75616:CDS | 45.0% | |
| CCCAACGCAAGAGAATATTG+TGG | + | chr3.3:71208497-71208516 | None:intergenic | 45.0% | |
| CCCACAATATTCTCTTGCGT+TGG | - | chr3.3:71208493-71208512 | MS.gene75616:intron | 45.0% | |
| CCTACTGTTTGTCACGTCAA+CGG | - | chr3.3:71207193-71207212 | MS.gene75616:intron | 45.0% | |
| CGTTGACGTGACAAACAGTA+GGG | + | chr3.3:71207195-71207214 | None:intergenic | 45.0% | |
| CTTAATCATCGACAAGAGGC+AGG | + | chr3.3:71208366-71208385 | None:intergenic | 45.0% | |
| GACCTGTCATCTATATTGGG+TGG | - | chr3.3:71208889-71208908 | MS.gene75616:intron | 45.0% | |
| GCATCACAGCATTCCTTCTT+TGG | + | chr3.3:71207055-71207074 | None:intergenic | 45.0% | |
| TACCCATGCTCTTGCTTTCA+GGG | + | chr3.3:71207147-71207166 | None:intergenic | 45.0% | |
| TCCCACCCAATATAGATGAC+AGG | + | chr3.3:71208894-71208913 | None:intergenic | 45.0% | |
| TCTTGCTAACAAGTGCCCTA+AGG | - | chr3.3:71209185-71209204 | MS.gene75616:intron | 45.0% | |
| TGTCATCTATATTGGGTGGG+AGG | - | chr3.3:71208893-71208912 | MS.gene75616:intron | 45.0% | |
| TTCCTTAGCATATGCCCTTG+GGG | - | chr3.3:71210630-71210649 | MS.gene75616:intron | 45.0% | |
| ! | AAGCAAGAGCATGGGTATTC+AGG | - | chr3.3:71207150-71207169 | MS.gene75616:intron | 45.0% |
| ! | AGGTACTGCAGCAAGAACAA+TGG | + | chr3.3:71211001-71211020 | None:intergenic | 45.0% |
| ! | CAGCATTCCTTCTTTGGTGT+AGG | + | chr3.3:71207049-71207068 | None:intergenic | 45.0% |
| ! | GATCATGACAGGTCTAAGGT+TGG | + | chr3.3:71210953-71210972 | None:intergenic | 45.0% |
| ! | TTTAAAGATTGCAGCGTCGG+GGG | + | chr3.3:71210839-71210858 | None:intergenic | 45.0% |
| !! | CAACGTGATAACGGTGACTT+TGG | - | chr3.3:71210975-71210994 | MS.gene75616:CDS | 45.0% |
| !! | CTCATCATAGGTGGCTCTAA+TGG | - | chr3.3:71206944-71206963 | MS.gene75616:CDS | 45.0% |
| !! | GAAAGCACCTACACCAAAGA+AGG | - | chr3.3:71207039-71207058 | MS.gene75616:CDS | 45.0% |
| !!! | GTTTTGGCTCTCATCATAGG+TGG | - | chr3.3:71206935-71206954 | MS.gene75616:CDS | 45.0% |
| !! | ATTAGATATTTAATAAAATA+AGG | + | chr3.3:71207950-71207969 | None:intergenic | 5.0% |
| !!! | AAATATAAAAATTTAACTTT+TGG | + | chr3.3:71209891-71209910 | None:intergenic | 5.0% |
| !!! | TATACTATTAATTTTTTTTT+TGG | - | chr3.3:71208693-71208712 | MS.gene75616:intron | 5.0% |
| AACTCCTACAACTCCGACCT+CGG | - | chr3.3:71210909-71210928 | MS.gene75616:CDS | 50.0% | |
| ACTGGGACAGTCGGAAATGT+TGG | + | chr3.3:71207221-71207240 | None:intergenic | 50.0% | |
| ATTCTCTTGCGTTGGGAGGT+TGG | - | chr3.3:71208501-71208520 | MS.gene75616:intron | 50.0% | |
| CCAGTTGCAAAGTCCAGACA+TGG | + | chr3.3:71207019-71207038 | None:intergenic | 50.0% | |
| CCATGTCTGGACTTTGCAAC+TGG | - | chr3.3:71207016-71207035 | MS.gene75616:CDS | 50.0% | |
| CCGTTGACGTGACAAACAGT+AGG | + | chr3.3:71207196-71207215 | None:intergenic | 50.0% | |
| GGAGGATGAGAATTGGTTGC+AGG | - | chr3.3:71208911-71208930 | MS.gene75616:intron | 50.0% | |
| GGCTTCAAAGTGTGGATCAG+TGG | - | chr3.3:71206979-71206998 | MS.gene75616:CDS | 50.0% | |
| GGTATGGTGACAGAGCTTCT+TGG | - | chr3.3:71210799-71210818 | MS.gene75616:CDS | 50.0% | |
| TAGCCCTGAAAGCAAGAGCA+TGG | - | chr3.3:71207141-71207160 | MS.gene75616:intron | 50.0% | |
| TGCAGACCTTGCATCTAGAC+AGG | - | chr3.3:71208942-71208961 | MS.gene75616:intron | 50.0% | |
| TTCTCTTGCGTTGGGAGGTT+GGG | - | chr3.3:71208502-71208521 | MS.gene75616:intron | 50.0% | |
| TTGGGTGGGAGGATGAGAAT+TGG | - | chr3.3:71208904-71208923 | MS.gene75616:intron | 50.0% | |
| ! | AGCCCTGAAAGCAAGAGCAT+GGG | - | chr3.3:71207142-71207161 | MS.gene75616:intron | 50.0% |
| !!! | AGGGAAGCTACGTTTTGGAG+AGG | + | chr3.3:71208137-71208156 | None:intergenic | 50.0% |
| GGTCGGAGTTGTAGGAGTTG+CGG | + | chr3.3:71210908-71210927 | None:intergenic | 55.0% | |
| GTTCTTGCTGCAGTACCTGC+TGG | - | chr3.3:71211003-71211022 | MS.gene75616:CDS | 55.0% | |
| ! | TGCCCCAAGGGCATATGCTA+AGG | + | chr3.3:71210635-71210654 | None:intergenic | 55.0% |
| CTTGCCGAGGTCGGAGTTGT+AGG | + | chr3.3:71210916-71210935 | None:intergenic | 60.0% | |
| TGAACCACCTGTGCTTGCCG+AGG | + | chr3.3:71210929-71210948 | None:intergenic | 60.0% | |
| ACTCCGACCTCGGCAAGCAC+AGG | - | chr3.3:71210919-71210938 | MS.gene75616:CDS | 65.0% | |
| CCACCTGTGCTTGCCGAGGT+CGG | + | chr3.3:71210925-71210944 | None:intergenic | 65.0% | |
| CCGACCTCGGCAAGCACAGG+TGG | - | chr3.3:71210922-71210941 | MS.gene75616:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 71206896 | 71211047 | 71206896 | ID=MS.gene75616 |
| chr3.3 | mRNA | 71206896 | 71211047 | 71206896 | ID=MS.gene75616.t1;Parent=MS.gene75616 |
| chr3.3 | exon | 71210705 | 71211047 | 71210705 | ID=MS.gene75616.t1.exon1;Parent=MS.gene75616.t1 |
| chr3.3 | CDS | 71210705 | 71211047 | 71210705 | ID=cds.MS.gene75616.t1;Parent=MS.gene75616.t1 |
| chr3.3 | exon | 71206896 | 71207131 | 71206896 | ID=MS.gene75616.t1.exon2;Parent=MS.gene75616.t1 |
| chr3.3 | CDS | 71206896 | 71207131 | 71206896 | ID=cds.MS.gene75616.t1;Parent=MS.gene75616.t1 |
| Gene Sequence |
| Protein sequence |
