AlfalfaGEDB | MS.gene80153

M. sativa cultivar XinJiangDaYe / MS.gene80153

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0046983
PFAM: PF00010.29

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80153.t1	KEH16413.1	98.3	346	6	0	1	346	42	387	1.20E-177	632.5

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80153.t1	Q56YJ8	60.6	360	113	6	10	346	49	402	6.6e-89	328.9

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80153.t1	A0A072THI6	98.3	346	6	0	1	346	42	387	8.4e-178	632.5

TFs/TRs:

Gene ID	Type	Classification
MS.gene80153.t1	TF	bHLH

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049150	MS.gene80153	0.823911	1.07E-53	-1.69E-46
MS.gene049151	MS.gene80153	0.803501	3.38E-49	-1.69E-46
MS.gene049153	MS.gene80153	0.828495	8.71E-55	-1.69E-46
MS.gene049346	MS.gene80153	0.810226	1.28E-50	-1.69E-46
MS.gene049758	MS.gene80153	0.817825	2.70E-52	-1.69E-46
MS.gene049910	MS.gene80153	0.809039	2.30E-50	-1.69E-46
MS.gene050128	MS.gene80153	0.809086	2.25E-50	-1.69E-46
MS.gene050168	MS.gene80153	0.823024	1.73E-53	-1.69E-46
MS.gene050301	MS.gene80153	0.846422	2.19E-59	-1.69E-46
MS.gene050398	MS.gene80153	0.820248	7.58E-53	-1.69E-46
MS.gene050642	MS.gene80153	0.803359	3.62E-49	-1.69E-46
MS.gene051663	MS.gene80153	0.81086	9.34E-51	-1.69E-46
MS.gene051860	MS.gene80153	0.821028	5.02E-53	-1.69E-46
MS.gene051983	MS.gene80153	0.827665	1.38E-54	-1.69E-46
MS.gene052077	MS.gene80153	0.820802	5.66E-53	-1.69E-46
MS.gene052188	MS.gene80153	0.836753	7.78E-57	-1.69E-46
MS.gene052253	MS.gene80153	0.824888	6.32E-54	-1.69E-46
MS.gene052255	MS.gene80153	0.820268	7.50E-53	-1.69E-46
MS.gene052340	MS.gene80153	0.849981	2.28E-60	-1.69E-46
MS.gene05316	MS.gene80153	0.833211	6.07E-56	-1.69E-46
MS.gene053557	MS.gene80153	0.804023	2.64E-49	-1.69E-46
MS.gene053836	MS.gene80153	0.844771	6.15E-59	-1.69E-46
MS.gene053928	MS.gene80153	0.900093	1.03E-77	-1.69E-46
MS.gene054011	MS.gene80153	0.804182	2.44E-49	-1.69E-46
MS.gene054123	MS.gene80153	0.815267	1.01E-51	-1.69E-46
MS.gene054183	MS.gene80153	0.813853	2.07E-51	-1.69E-46
MS.gene054349	MS.gene80153	0.83714	6.20E-57	-1.69E-46
MS.gene054556	MS.gene80153	0.804299	2.31E-49	-1.69E-46
MS.gene054930	MS.gene80153	0.813276	2.78E-51	-1.69E-46
MS.gene055116	MS.gene80153	0.814688	1.36E-51	-1.69E-46
MS.gene055390	MS.gene80153	0.806313	8.74E-50	-1.69E-46
MS.gene055422	MS.gene80153	0.813152	2.96E-51	-1.69E-46
MS.gene055428	MS.gene80153	0.800071	1.71E-48	-1.69E-46
MS.gene05553	MS.gene80153	0.843767	1.14E-58	-1.69E-46
MS.gene055604	MS.gene80153	0.845857	3.13E-59	-1.69E-46
MS.gene056191	MS.gene80153	0.801034	1.09E-48	-1.69E-46
MS.gene056659	MS.gene80153	0.80986	1.54E-50	-1.69E-46
MS.gene056723	MS.gene80153	0.827664	1.38E-54	-1.69E-46
MS.gene056979	MS.gene80153	0.820663	6.09E-53	-1.69E-46
MS.gene05702	MS.gene80153	0.828568	8.36E-55	-1.69E-46
MS.gene057121	MS.gene80153	0.822701	2.06E-53	-1.69E-46
MS.gene057396	MS.gene80153	0.838571	2.66E-57	-1.69E-46
MS.gene057448	MS.gene80153	0.81339	2.62E-51	-1.69E-46
MS.gene057449	MS.gene80153	0.800025	1.75E-48	-1.69E-46
MS.gene057450	MS.gene80153	0.81101	8.67E-51	-1.69E-46
MS.gene057469	MS.gene80153	0.803882	2.82E-49	-1.69E-46
MS.gene057749	MS.gene80153	0.817887	2.61E-52	-1.69E-46
MS.gene057750	MS.gene80153	0.827885	1.22E-54	-1.69E-46
MS.gene057754	MS.gene80153	0.832029	1.19E-55	-1.69E-46
MS.gene057823	MS.gene80153	0.812992	3.21E-51	-1.69E-46
MS.gene057825	MS.gene80153	0.801168	1.02E-48	-1.69E-46
MS.gene058002	MS.gene80153	0.860331	2.23E-63	-1.69E-46
MS.gene05811	MS.gene80153	0.836493	9.06E-57	-1.69E-46
MS.gene058142	MS.gene80153	0.847236	1.31E-59	-1.69E-46
MS.gene058749	MS.gene80153	0.805772	1.14E-49	-1.69E-46
MS.gene05886	MS.gene80153	0.806884	6.62E-50	-1.69E-46
MS.gene058949	MS.gene80153	0.843158	1.66E-58	-1.69E-46
MS.gene05907	MS.gene80153	0.8467	1.84E-59	-1.69E-46
MS.gene059285	MS.gene80153	0.806396	8.40E-50	-1.69E-46
MS.gene059420	MS.gene80153	0.826808	2.21E-54	-1.69E-46
MS.gene059462	MS.gene80153	0.812085	5.06E-51	-1.69E-46
MS.gene059518	MS.gene80153	0.809553	1.79E-50	-1.69E-46
MS.gene05984	MS.gene80153	0.817159	3.81E-52	-1.69E-46
MS.gene059894	MS.gene80153	0.826044	3.37E-54	-1.69E-46
MS.gene06037	MS.gene80153	0.829896	3.98E-55	-1.69E-46
MS.gene060407	MS.gene80153	0.808244	3.41E-50	-1.69E-46
MS.gene060986	MS.gene80153	0.806579	7.68E-50	-1.69E-46
MS.gene061049	MS.gene80153	0.851632	7.82E-61	-1.69E-46
MS.gene061159	MS.gene80153	0.817445	3.29E-52	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80153.t1	MTR_0194s0050	98.555	346	5	0	1	346	42	387	0.0	706
MS.gene80153.t1	MTR_3g099620	46.667	225	97	6	124	337	97	309	2.35e-55	184
MS.gene80153.t1	MTR_1g082480	47.368	209	99	4	136	340	129	330	3.08e-54	181
MS.gene80153.t1	MTR_8g066770	41.241	274	122	7	98	346	50	309	1.53e-52	176
MS.gene80153.t1	MTR_8g024210	53.555	211	79	4	132	341	170	362	2.46e-52	177
MS.gene80153.t1	MTR_7g113830	45.133	226	109	6	125	346	98	312	2.89e-52	176
MS.gene80153.t1	MTR_1g082480	47.668	193	91	3	136	325	129	314	5.47e-50	170
MS.gene80153.t1	MTR_3g090850	38.434	281	128	7	100	335	46	326	1.20e-49	169
MS.gene80153.t1	MTR_2g022280	45.408	196	97	2	143	338	1	186	9.19e-49	162
MS.gene80153.t1	MTR_1g028470	38.496	226	128	1	121	335	65	290	1.51e-47	162
MS.gene80153.t1	MTR_5g064950	43.981	216	112	6	124	336	79	288	1.51e-47	162
MS.gene80153.t1	MTR_5g064950	45.685	197	99	5	124	318	79	269	5.64e-45	156
MS.gene80153.t1	MTR_8g067280	27.511	229	135	9	118	342	439	640	2.57e-16	80.5
MS.gene80153.t1	MTR_5g030430	26.267	217	131	6	118	328	470	663	5.72e-14	73.2
MS.gene80153.t1	MTR_4g094762	25.500	200	132	4	145	342	293	477	1.36e-12	68.9
MS.gene80153.t1	MTR_1g072320	29.032	155	95	5	145	299	471	610	7.17e-12	67.0
MS.gene80153.t1	MTR_3g498695	28.063	253	136	11	66	315	239	448	7.85e-12	66.6
MS.gene80153.t1	MTR_3g498695	28.063	253	136	11	66	315	239	448	8.16e-12	66.6
MS.gene80153.t1	MTR_5g014560	22.772	202	132	3	134	334	121	299	7.83e-11	62.8
MS.gene80153.t1	MTR_2g104560	25.620	242	132	10	108	335	14	221	8.04e-11	61.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene80153.t1	AT3G24140	63.510	359	92	9	16	346	55	402	1.94e-139	401
MS.gene80153.t1	AT3G24140	63.231	359	93	9	16	346	55	402	1.08e-138	400
MS.gene80153.t1	AT3G06120	44.059	202	100	3	143	340	1	193	3.50e-49	164
MS.gene80153.t1	AT1G72210	42.922	219	106	4	133	346	115	319	2.11e-48	166
MS.gene80153.t1	AT1G22490	43.458	214	107	4	132	344	104	304	3.38e-48	164
MS.gene80153.t1	AT1G22490	45.989	187	88	3	132	318	104	277	4.78e-45	157
MS.gene80153.t1	AT1G72210	43.684	190	89	3	133	318	115	290	9.18e-44	153
MS.gene80153.t1	AT2G46810	41.176	204	98	3	136	337	114	297	3.96e-41	146
MS.gene80153.t1	AT4G01460	39.336	211	117	3	133	342	105	305	2.90e-40	144
MS.gene80153.t1	AT4G01460	39.336	211	117	3	133	342	105	305	2.90e-40	144
MS.gene80153.t1	AT2G46810	41.176	204	98	3	136	337	174	357	3.00e-40	145
MS.gene80153.t1	AT2G46810	41.176	204	98	3	136	337	186	369	3.62e-40	145
MS.gene80153.t1	AT5G46690	41.964	224	114	4	132	340	77	299	1.96e-39	142
MS.gene80153.t1	AT2G46810	44.022	184	82	2	136	318	114	277	5.30e-39	141
MS.gene80153.t1	AT3G61950	40.580	207	100	4	133	337	117	302	1.36e-38	139
MS.gene80153.t1	AT3G61950	42.487	193	89	3	133	324	117	288	2.21e-38	139
MS.gene80153.t1	AT3G61950	39.614	207	102	4	133	337	168	353	5.17e-38	139
MS.gene80153.t1	AT3G61950	41.451	193	91	3	133	324	168	339	1.09e-37	138
MS.gene80153.t1	AT5G46690	43.500	200	98	3	133	318	78	276	3.54e-36	132
MS.gene80153.t1	AT5G65320	36.916	214	118	4	133	341	92	293	2.00e-31	120
MS.gene80153.t1	AT5G65320	39.153	189	100	3	133	318	92	268	4.66e-28	110
MS.gene80153.t1	AT5G53210	65.714	70	24	0	141	210	100	169	9.60e-26	106
MS.gene80153.t1	AT5G53210	50.000	74	37	0	248	321	274	347	2.87e-15	76.3
MS.gene80153.t1	AT5G53210	65.714	70	24	0	141	210	100	169	1.29e-25	105
MS.gene80153.t1	AT5G53210	46.591	88	47	0	248	335	274	361	1.35e-18	86.3
MS.gene80153.t1	AT4G17880	27.074	229	119	6	101	320	380	569	4.25e-15	76.6
MS.gene80153.t1	AT1G32640	25.714	245	128	7	85	319	405	605	1.01e-14	75.5
MS.gene80153.t1	AT4G37850	25.954	262	160	6	85	338	90	325	5.31e-13	69.3
MS.gene80153.t1	AT4G37850	25.954	262	160	6	85	338	90	325	5.31e-13	69.3
MS.gene80153.t1	AT3G61950	66.667	42	14	0	133	174	168	209	7.19e-13	67.4
MS.gene80153.t1	AT3G61950	66.667	42	14	0	133	174	168	209	7.19e-13	67.4
MS.gene80153.t1	AT5G46760	24.898	245	150	7	80	320	358	572	2.91e-12	68.2

Find 64 sgRNAs with CRISPR-Local

Find 104 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACCTGATTCTTCGCGGTTTA+AGG	0.091676	5.1:+42079445	None:intergenic
GTGATGCAGTTTGCAGATTT+TGG	0.187925	5.1:-42079479	MS.gene80153:CDS
GGTGATCAAGCTTCTATAAT+TGG	0.199677	5.1:-42078578	MS.gene80153:CDS
TCACTTGTCTTAACAGTTCT+TGG	0.201116	5.1:+42079179	None:intergenic
GAAGCACAATCAAAACAAAT+TGG	0.265257	5.1:-42078476	MS.gene80153:CDS
CACCACTCAACATCAAATTT+TGG	0.284583	5.1:+42079366	None:intergenic
CCTCCTGAAGTTTGTGTTTG+AGG	0.310661	5.1:+42079545	None:intergenic
TCGCGGTTTAAGGCTAATTT+AGG	0.318430	5.1:+42079455	None:intergenic
GTGATCAAGCTTCTATAATT+GGG	0.350819	5.1:-42078577	MS.gene80153:CDS
ACTAGCTTCATCTGGTCATT+TGG	0.371823	5.1:+42078398	None:intergenic
AAGCACAATCAAAACAAATT+GGG	0.380451	5.1:-42078475	MS.gene80153:CDS
AAGCTAGTTGAGATGGAAAC+TGG	0.382861	5.1:-42078383	MS.gene80153:CDS
TATAGAATTTGTGAGGGAAT+TGG	0.383630	5.1:-42078549	MS.gene80153:CDS
AACCAGGCATGAGGGATCTA+AGG	0.393915	5.1:+42079078	None:intergenic
GATGTAGAAGTGAAACTTCT+AGG	0.406812	5.1:-42078320	MS.gene80153:CDS
GCCTTAAACCGCGAAGAATC+AGG	0.418841	5.1:-42079446	MS.gene80153:CDS
CCATCTCAACTAGCTTCATC+TGG	0.419409	5.1:+42078390	None:intergenic
GGAAACTTGAGAAAATAAAT+CGG	0.433203	5.1:+42079413	None:intergenic
TCTATCTTATTGGTTAAGAC+AGG	0.457469	5.1:+42079392	None:intergenic
TTGAGTGGTGGTGATGGGTT+AGG	0.458608	5.1:-42079353	MS.gene80153:CDS
TGCTGAGAGTAAGTCATGTT+TGG	0.461833	5.1:-42078345	MS.gene80153:CDS
GTCCTTAGATCCCTCATGCC+TGG	0.466194	5.1:-42079080	MS.gene80153:CDS
CAAAAGAGAAGGAGACTACT+AGG	0.474641	5.1:-42078500	MS.gene80153:CDS
ATTCTCTCAAGGAGAAGGCC+TGG	0.493901	5.1:-42078278	MS.gene80153:CDS
TGGTCATTTGGTAAAGGAGC+TGG	0.494479	5.1:+42078410	None:intergenic
TTGATGTTGAGTGGTGGTGA+TGG	0.503048	5.1:-42079359	MS.gene80153:CDS
CCAGATGAAGCTAGTTGAGA+TGG	0.511789	5.1:-42078390	MS.gene80153:CDS
GCCTGGTTCATACGTGCAAA+GGG	0.513019	5.1:-42079063	MS.gene80153:intron
CTGTTCAATAGTGGTGATGT+TGG	0.513963	5.1:+42078199	None:intergenic
TTCATCTGGTCATTTGGTAA+AGG	0.516461	5.1:+42078404	None:intergenic
AAGAACTGTCTGTTCAATAG+TGG	0.519118	5.1:+42078190	None:intergenic
TGATGTTGAGTGGTGGTGAT+GGG	0.525956	5.1:-42079358	MS.gene80153:CDS
GAAACTTGAGAAAATAAATC+GGG	0.527811	5.1:+42079414	None:intergenic
TGCAAGAGAACAACAAGAAG+AGG	0.529798	5.1:-42079208	MS.gene80153:CDS
ATGGTCTTGATCAACTGTCC+AGG	0.530534	5.1:+42078260	None:intergenic
TGCCTGGTTCATACGTGCAA+AGG	0.533937	5.1:-42079064	MS.gene80153:CDS
AGCTAGTGATACAAGGTTCA+CGG	0.534009	5.1:-42077906	MS.gene80153:CDS
TTAAAATTCTCTCAAGGAGA+AGG	0.534852	5.1:-42078283	MS.gene80153:CDS
CATATCTTCAAGAGCAGCAA+TGG	0.547350	5.1:+42078241	None:intergenic
ACCCTTTGCACGTATGAACC+AGG	0.550812	5.1:+42079062	None:intergenic
TCTTTACTCATTCAATGTCA+AGG	0.551744	5.1:-42078171	MS.gene80153:intron
CTTCGATACCTGATTCTTCG+CGG	0.569325	5.1:+42079438	None:intergenic
GTCTAGAATCACAAAAGAGA+AGG	0.576264	5.1:-42078511	MS.gene80153:CDS
AGTTTCTGACGAGAACAACT+CGG	0.576812	5.1:-42079255	MS.gene80153:CDS
ATGCCTCAAACACAAACTTC+AGG	0.576898	5.1:-42079548	MS.gene80153:CDS
TAGTGGTGATGTTGGTGTGA+AGG	0.588630	5.1:+42078207	None:intergenic
GGGGAGCTATAGAATTTGTG+AGG	0.588962	5.1:-42078556	MS.gene80153:CDS
TGACTCACATAGCTGTTGAA+AGG	0.591781	5.1:-42079136	MS.gene80153:CDS
AGCACAATCAAAACAAATTG+GGG	0.592351	5.1:-42078474	MS.gene80153:CDS
TGATCAAGCTTCTATAATTG+GGG	0.592592	5.1:-42078576	MS.gene80153:CDS
TCCAGGTAGCTAGTGATACA+AGG	0.601551	5.1:-42077913	MS.gene80153:intron
GCACGTATGAACCAGGCATG+AGG	0.603673	5.1:+42079069	None:intergenic
CAATGATTAAAATTCTCTCA+AGG	0.606240	5.1:-42078289	MS.gene80153:CDS
CACGTATGAACCAGGCATGA+GGG	0.608646	5.1:+42079070	None:intergenic
GACCAAAATTTGATGTTGAG+TGG	0.615025	5.1:-42079368	MS.gene80153:CDS
GAGGTTCAAATTGACAAGCG+TGG	0.615809	5.1:-42079318	MS.gene80153:CDS
TAGCTGTTGAAAGGAATCGA+AGG	0.623409	5.1:-42079127	MS.gene80153:CDS
AAAACTTAGTATCTGCTGAA+CGG	0.628856	5.1:+42077865	None:intergenic
CCTCAAACACAAACTTCAGG+AGG	0.642336	5.1:-42079545	MS.gene80153:CDS
GGGAGCTATAGAATTTGTGA+GGG	0.652926	5.1:-42078555	MS.gene80153:CDS
CAAAATTTGATGTTGAGTGG+TGG	0.660663	5.1:-42079365	MS.gene80153:CDS
GATCAAGCTTCTATAATTGG+GGG	0.684770	5.1:-42078575	MS.gene80153:CDS
GTTCAAATTGACAAGCGTGG+AGG	0.694433	5.1:-42079315	MS.gene80153:CDS
GGTTAGGAGAAAATGACGAG+AGG	0.716694	5.1:-42079337	MS.gene80153:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	GTAACAATAATTTAAAACTT+TGG	+	chr5.1:42078666-42078685	None:intergenic	15.0%
!!!	GTTTTTGATTTTACAATATA+GGG	-	chr5.1:42078805-42078824	MS.gene80153:intron	15.0%
!!!	TAAATTTTAGAGAACAATTA+CGG	+	chr5.1:42078688-42078707	None:intergenic	15.0%
!!!	TGTTTTTGATTTTACAATAT+AGG	-	chr5.1:42078804-42078823	MS.gene80153:intron	15.0%
!!	CAAACATAAACTAAAATTTG+AGG	-	chr5.1:42079418-42079437	MS.gene80153:CDS	20.0%
!!	GAAAAAATGTATGTTATAGT+TGG	-	chr5.1:42078390-42078409	MS.gene80153:CDS	20.0%
!!!	ATACTTGTGATTTTATTAGA+TGG	-	chr5.1:42079370-42079389	MS.gene80153:CDS	20.0%
!	AAGCACAATCAAAACAAATT+GGG	-	chr5.1:42078929-42078948	MS.gene80153:intron	25.0%
!	ATTATCTCATAAGATGTGAA+TGG	+	chr5.1:42079329-42079348	None:intergenic	25.0%
!	ATTGCACCAAAATTAAACAA+TGG	-	chr5.1:42078726-42078745	MS.gene80153:intron	25.0%
!	CAATGATTAAAATTCTCTCA+AGG	-	chr5.1:42079115-42079134	MS.gene80153:CDS	25.0%
!	GAAACTTGAGAAAATAAATC+GGG	+	chr5.1:42077993-42078012	None:intergenic	25.0%
!	GGAAACTTGAGAAAATAAAT+CGG	+	chr5.1:42077994-42078013	None:intergenic	25.0%
!!!	ATGTTATAGTTGGTGAAATT+TGG	-	chr5.1:42078400-42078419	MS.gene80153:CDS	25.0%
!!!	ATTTTGGTCTTCTATCTTAT+TGG	+	chr5.1:42078025-42078044	None:intergenic	25.0%
!!!	CTCTAACCATTGTTTAATTT+TGG	+	chr5.1:42078735-42078754	None:intergenic	25.0%
!!!	TGTTATAGTTGGTGAAATTT+GGG	-	chr5.1:42078401-42078420	MS.gene80153:CDS	25.0%
	AAAACTTAGTATCTGCTGAA+CGG	+	chr5.1:42079542-42079561	None:intergenic	30.0%
	AAATGTGTCCTTGATTTCTA+AGG	+	chr5.1:42078624-42078643	None:intergenic	30.0%
	AGCACAATCAAAACAAATTG+GGG	-	chr5.1:42078930-42078949	MS.gene80153:intron	30.0%
	CTGATACCATGTTGAAATTT+GGG	+	chr5.1:42078469-42078488	None:intergenic	30.0%
	GAAGCACAATCAAAACAAAT+TGG	-	chr5.1:42078928-42078947	MS.gene80153:intron	30.0%
	GTGATCAAGCTTCTATAATT+GGG	-	chr5.1:42078827-42078846	MS.gene80153:intron	30.0%
	TATAGAATTTGTGAGGGAAT+TGG	-	chr5.1:42078855-42078874	MS.gene80153:intron	30.0%
	TCTGATACCATGTTGAAATT+TGG	+	chr5.1:42078470-42078489	None:intergenic	30.0%
	TCTTTACTCATTCAATGTCA+AGG	-	chr5.1:42079233-42079252	MS.gene80153:CDS	30.0%
	TGATACCATGTTGAAATTTG+GGG	+	chr5.1:42078468-42078487	None:intergenic	30.0%
	TGATCAAGCTTCTATAATTG+GGG	-	chr5.1:42078828-42078847	MS.gene80153:intron	30.0%
	TTAAAATTCTCTCAAGGAGA+AGG	-	chr5.1:42079121-42079140	MS.gene80153:CDS	30.0%
!	TCTATCTTATTGGTTAAGAC+AGG	+	chr5.1:42078015-42078034	None:intergenic	30.0%
!!	GTTATAGTTGGTGAAATTTG+GGG	-	chr5.1:42078402-42078421	MS.gene80153:CDS	30.0%
!!!	GTATTTTTTTTGATGTGTCC+AGG	-	chr5.1:42079474-42079493	MS.gene80153:CDS	30.0%
	AAGAACTGTCTGTTCAATAG+TGG	+	chr5.1:42079217-42079236	None:intergenic	35.0%
	CAAAATTTGATGTTGAGTGG+TGG	-	chr5.1:42078039-42078058	MS.gene80153:intron	35.0%
	GACCAAAATTTGATGTTGAG+TGG	-	chr5.1:42078036-42078055	MS.gene80153:intron	35.0%
	GATCAAGCTTCTATAATTGG+GGG	-	chr5.1:42078829-42078848	MS.gene80153:intron	35.0%
	GATGTAGAAGTGAAACTTCT+AGG	-	chr5.1:42079084-42079103	MS.gene80153:CDS	35.0%
	GGTGATCAAGCTTCTATAAT+TGG	-	chr5.1:42078826-42078845	MS.gene80153:intron	35.0%
	TCACTTGTCTTAACAGTTCT+TGG	+	chr5.1:42078228-42078247	None:intergenic	35.0%
	TCCTCAAACACAAGTTGTTT+GGG	-	chr5.1:42078551-42078570	MS.gene80153:CDS	35.0%
	TTCATCTGGTCATTTGGTAA+AGG	+	chr5.1:42079003-42079022	None:intergenic	35.0%
!	CACCACTCAACATCAAATTT+TGG	+	chr5.1:42078041-42078060	None:intergenic	35.0%
!	GTCTAGAATCACAAAAGAGA+AGG	-	chr5.1:42078893-42078912	MS.gene80153:intron	35.0%
	AAAGGAGCTGGAAAAAATGG+AGG	+	chr5.1:42078985-42079004	None:intergenic	40.0%
	AAGCTAGTTGAGATGGAAAC+TGG	-	chr5.1:42079021-42079040	MS.gene80153:intron	40.0%
	AGCTAGTGATACAAGGTTCA+CGG	-	chr5.1:42079498-42079517	MS.gene80153:CDS	40.0%
	AGTTTCTGACGAGAACAACT+CGG	-	chr5.1:42078149-42078168	MS.gene80153:intron	40.0%
	ATGCCTCAAACACAAACTTC+AGG	-	chr5.1:42077856-42077875	MS.gene80153:CDS	40.0%
	CAAAAGAGAAGGAGACTACT+AGG	-	chr5.1:42078904-42078923	MS.gene80153:intron	40.0%
	CATATCTTCAAGAGCAGCAA+TGG	+	chr5.1:42079166-42079185	None:intergenic	40.0%
	CCTCAAACACAAGTTGTTTG+GGG	-	chr5.1:42078552-42078571	MS.gene80153:CDS	40.0%
	CTAACTCATCCTCACAAAAC+CGG	-	chr5.1:42078426-42078445	MS.gene80153:CDS	40.0%
	CTCAAACACAAGTTGTTTGG+GGG	-	chr5.1:42078553-42078572	MS.gene80153:CDS	40.0%
	GGGAGCTATAGAATTTGTGA+GGG	-	chr5.1:42078849-42078868	MS.gene80153:intron	40.0%
	GGTAAAGGAGCTGGAAAAAA+TGG	+	chr5.1:42078988-42079007	None:intergenic	40.0%
	GTCCTCAAACACAAGTTGTT+TGG	-	chr5.1:42078550-42078569	MS.gene80153:CDS	40.0%
	TAGCTGTTGAAAGGAATCGA+AGG	-	chr5.1:42078277-42078296	MS.gene80153:CDS	40.0%
	TCCTGTCTCCTTAGAAATCA+AGG	-	chr5.1:42078613-42078632	MS.gene80153:intron	40.0%
	TGACTCACATAGCTGTTGAA+AGG	-	chr5.1:42078268-42078287	MS.gene80153:CDS	40.0%
	TGCAAGAGAACAACAAGAAG+AGG	-	chr5.1:42078196-42078215	MS.gene80153:CDS	40.0%
	TGCTGAGAGTAAGTCATGTT+TGG	-	chr5.1:42079059-42079078	MS.gene80153:intron	40.0%
	TTAGGCCCCAAATTTCAACA+TGG	-	chr5.1:42078460-42078479	MS.gene80153:CDS	40.0%
!	AAACCGGCTTTGTATGAGTT+AGG	-	chr5.1:42078442-42078461	MS.gene80153:CDS	40.0%
!	ACTAGCTTCATCTGGTCATT+TGG	+	chr5.1:42079009-42079028	None:intergenic	40.0%
!	CAAACTTCAGGAGGCTTTTA+TGG	-	chr5.1:42077868-42077887	MS.gene80153:CDS	40.0%
!	CTGTTCAATAGTGGTGATGT+TGG	+	chr5.1:42079208-42079227	None:intergenic	40.0%
!	GTGATGCAGTTTGCAGATTT+TGG	-	chr5.1:42077925-42077944	MS.gene80153:intron	40.0%
!	TCCTTGATTTCTAAGGAGAC+AGG	+	chr5.1:42078617-42078636	None:intergenic	40.0%
!	TCGCGGTTTAAGGCTAATTT+AGG	+	chr5.1:42077952-42077971	None:intergenic	40.0%
	AAACACAAGTTGTTTGGGGG+TGG	-	chr5.1:42078556-42078575	MS.gene80153:CDS	45.0%
	ACCTGATTCTTCGCGGTTTA+AGG	+	chr5.1:42077962-42077981	None:intergenic	45.0%
	ACCTTGTATCACTAGCTACC+TGG	+	chr5.1:42079495-42079514	None:intergenic	45.0%
	CCAGATGAAGCTAGTTGAGA+TGG	-	chr5.1:42079014-42079033	MS.gene80153:intron	45.0%
	CCCCAAACAACTTGTGTTTG+AGG	+	chr5.1:42078555-42078574	None:intergenic	45.0%
	CCTCAAACACAAACTTCAGG+AGG	-	chr5.1:42077859-42077878	MS.gene80153:CDS	45.0%
	CCTCCTGAAGTTTGTGTTTG+AGG	+	chr5.1:42077862-42077881	None:intergenic	45.0%
	CTTCGATACCTGATTCTTCG+CGG	+	chr5.1:42077969-42077988	None:intergenic	45.0%
	GAGGTTCAAATTGACAAGCG+TGG	-	chr5.1:42078086-42078105	MS.gene80153:intron	45.0%
	GGGGAGCTATAGAATTTGTG+AGG	-	chr5.1:42078848-42078867	MS.gene80153:intron	45.0%
	GGTTAGGAGAAAATGACGAG+AGG	-	chr5.1:42078067-42078086	MS.gene80153:intron	45.0%
	GTTCAAATTGACAAGCGTGG+AGG	-	chr5.1:42078089-42078108	MS.gene80153:intron	45.0%
	TCCAGGTAGCTAGTGATACA+AGG	-	chr5.1:42079491-42079510	MS.gene80153:CDS	45.0%
	TGGTATCAGAGCGTGGTTAA+CGG	-	chr5.1:42078480-42078499	MS.gene80153:CDS	45.0%
	TGGTCATTTGGTAAAGGAGC+TGG	+	chr5.1:42078997-42079016	None:intergenic	45.0%
	TTCAACATGGTATCAGAGCG+TGG	-	chr5.1:42078473-42078492	MS.gene80153:CDS	45.0%
!	ATGGTCTTGATCAACTGTCC+AGG	+	chr5.1:42079147-42079166	None:intergenic	45.0%
!	CCATCTCAACTAGCTTCATC+TGG	+	chr5.1:42079017-42079036	None:intergenic	45.0%
!	TAGTGGTGATGTTGGTGTGA+AGG	+	chr5.1:42079200-42079219	None:intergenic	45.0%
!	TGATGTTGAGTGGTGGTGAT+GGG	-	chr5.1:42078046-42078065	MS.gene80153:intron	45.0%
!	TTGATGTTGAGTGGTGGTGA+TGG	-	chr5.1:42078045-42078064	MS.gene80153:intron	45.0%
!!	CATACAAAGCCGGTTTTGTG+AGG	+	chr5.1:42078438-42078457	None:intergenic	45.0%
	AACCAGGCATGAGGGATCTA+AGG	+	chr5.1:42078329-42078348	None:intergenic	50.0%
	ACCCTTTGCACGTATGAACC+AGG	+	chr5.1:42078345-42078364	None:intergenic	50.0%
	AGGAGACAGGAACATACGTC+TGG	+	chr5.1:42078604-42078623	None:intergenic	50.0%
	ATTCTCTCAAGGAGAAGGCC+TGG	-	chr5.1:42079126-42079145	MS.gene80153:CDS	50.0%
	CACGTATGAACCAGGCATGA+GGG	+	chr5.1:42078337-42078356	None:intergenic	50.0%
	GCCTGGTTCATACGTGCAAA+GGG	-	chr5.1:42078341-42078360	MS.gene80153:CDS	50.0%
	GCCTTAAACCGCGAAGAATC+AGG	-	chr5.1:42077958-42077977	MS.gene80153:intron	50.0%
	GGGCCTAACTCATACAAAGC+CGG	+	chr5.1:42078448-42078467	None:intergenic	50.0%
	TGCCTGGTTCATACGTGCAA+AGG	-	chr5.1:42078340-42078359	MS.gene80153:CDS	50.0%
!!	TTGAGTGGTGGTGATGGGTT+AGG	-	chr5.1:42078051-42078070	MS.gene80153:intron	50.0%
	GCACGTATGAACCAGGCATG+AGG	+	chr5.1:42078338-42078357	None:intergenic	55.0%
	GTCCTTAGATCCCTCATGCC+TGG	-	chr5.1:42078324-42078343	MS.gene80153:CDS	55.0%
	GTTGTTTGGGGGTGGTCGCA+CGG	-	chr5.1:42078564-42078583	MS.gene80153:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	42077841	42079585	42077841	ID=MS.gene80153
chr5.1	mRNA	42077841	42079585	42077841	ID=MS.gene80153.t1;Parent=MS.gene80153
chr5.1	exon	42079064	42079585	42079064	ID=MS.gene80153.t1.exon1;Parent=MS.gene80153.t1
chr5.1	CDS	42079064	42079585	42079064	ID=cds.MS.gene80153.t1;Parent=MS.gene80153.t1
chr5.1	exon	42078172	42078600	42078172	ID=MS.gene80153.t1.exon2;Parent=MS.gene80153.t1
chr5.1	CDS	42078172	42078600	42078172	ID=cds.MS.gene80153.t1;Parent=MS.gene80153.t1
chr5.1	exon	42077841	42077930	42077841	ID=MS.gene80153.t1.exon3;Parent=MS.gene80153.t1
chr5.1	CDS	42077841	42077930	42077841	ID=cds.MS.gene80153.t1;Parent=MS.gene80153.t1

Gene Sequence

>MS.gene80153

ATGGTGGATAATTACATGCCTCAAACACAAACTTCAGGAGGCTTTTATGGTGCAAACTCTTTTGATAAAATGAGTTTTGCAGATGTGATGCAGTTTGCAGATTTTGGACCTAAATTAGCCTTAAACCGCGAAGAATCAGGTATCGAAGACCCGATTTATTTTCTCAAGTTTCCTGTCTTAACCAATAAGATAGAAGACCAAAATTTGATGTTGAGTGGTGGTGATGGGTTAGGAGAAAATGACGAGAGGTTCAAATTGACAAGCGTGGAGGATAAATCAAGAGATCAACAAGATCACGAAGAAGCTCGAGTTTCTGACGAGAACAACTCGGTGCAAGAGAAGAATTGTGCAGTAGTGCAAGAGAACAACAAGAAGAGGAAGAGACCAAGAACTGTTAAGACAAGTGAAGAAGTAGAGAGTCAACGTATGACTCACATAGCTGTTGAAAGGAATCGAAGGAAACAAATGAATGAGCATCTTCGTGTCCTTAGATCCCTCATGCCTGGTTCATACGTGCAAAGGGTATTTTTATTTATTTATTTTCTTCAAGAAAAAATGTATGTTATAGTTGGTGAAATTTGGGGTCTAACTCATCCTCACAAAACCGGCTTTGTATGAGTTAGGCCCCAAATTTCAACATGGTATCAGAGCGTGGTTAACGGATGAGATGATTCTCATGTTGAGACATCATCTTGTGTTGTAGATGATCGTCCTCAAACACAAGTTGTTTGGGGGTGGTCGCACGGTCTTCGTTCATCATCCAGACGTATGTTCCTGTCTCCTTAGAAATCAAGGACACATTTGTACGACTATAATGTTGCACCAAAGTTTTAAATTATTGTTACCGTAATTGTTCTCTAAAATTTAACAATGTAATGTCTATAAATTGCACCAAAATTAAACAATGGTTAGAGTTAGACACAAACTTTAAACTTTTTTCTTGATTGATTTATTAAATAATTTTGTTTTTGATTTTACAATATAGGGTGATCAAGCTTCTATAATTGGGGGAGCTATAGAATTTGTGAGGGAATTGGAACAACTTCTTCAATGTCTAGAATCACAAAAGAGAAGGAGACTACTAGGAGAAGCACAATCAAAACAAATTGGGGATTCATCTCTTGCATCAACACAACAACAGCCTCCATTTTTTCCAGCTCCTTTACCAAATGACCAGATGAAGCTAGTTGAGATGGAAACTGGACTTCAAGAAGAAACTGCTGAGAGTAAGTCATGTTTGGCTGATGTAGAAGTGAAACTTCTAGGATTTGATGCAATGATTAAAATTCTCTCAAGGAGAAGGCCTGGACAGTTGATCAAGACCATTGCTGCTCTTGAAGATATGCAGCTCATTATCCTTCACACCAACATCACCACTATTGAACAGACAGTTCTTTACTCATTCAATGTCAAGGTATATTCATTAAGTGATTACTTAATTGTTATGCGTTCAATATAATATTACTTTTTTATACATGTATGTATCCATTCACATCTTATGAGATAATAAACTTGCATCACAATGTGATATACTTGTGATTTTATTAGATGGTACTAAGTCTAAAATTTAAGCAAATCAAACATAAACTAAAATTTGAGGATATATATGCTTTATGATATTGTAATATATATTGTATTTTTTTTGATGTGTCCAGGTAGCTAGTGATACAAGGTTCACGGCTGAAGATATAGCAAGCTCCGTTCAGCAGATACTAAGTTTTATTCATGCAAACACTAGCATGTGA

Protein sequence

>MS.gene80153.t1

MVDNYMPQTQTSGGFYGANSFDKMSFADVMQFADFGPKLALNREESGIEDPIYFLKFPVLTNKIEDQNLMLSGGDGLGENDERFKLTSVEDKSRDQQDHEEARVSDENNSVQEKNCAVVQENNKKRKRPRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEAQSKQIGDSSLASTQQQPPFFPAPLPNDQMKLVEMETGLQEETAESKSCLADVEVKLLGFDAMIKILSRRRPGQLIKTIAALEDMQLIILHTNITTIEQTVLYSFNVKVASDTRFTAEDIASSVQQILSFIHANTSM