AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene84327


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84327.t1 MTR_2g086420 97.988 497 6 3 1 493 1 497 0.0 998
MS.gene84327.t1 MTR_2g086420 97.787 497 6 4 1 493 1 496 0.0 990
MS.gene84327.t1 MTR_4g053250 66.272 507 139 9 1 493 1 489 0.0 655
MS.gene84327.t1 MTR_8g040120 63.194 288 96 3 188 465 179 466 4.69e-125 373
MS.gene84327.t1 MTR_7g089800 59.934 302 110 3 174 465 123 423 3.44e-123 367
MS.gene84327.t1 MTR_7g089800 59.934 302 110 3 174 465 152 452 1.16e-122 366
MS.gene84327.t1 MTR_7g092750 43.396 477 185 12 19 465 42 463 2.01e-121 363
MS.gene84327.t1 MTR_7g092750 54.259 317 125 3 169 465 46 362 5.47e-120 356
MS.gene84327.t1 MTR_3g087940 55.137 292 119 4 183 465 73 361 1.40e-109 330
MS.gene84327.t1 MTR_5g054900 54.514 288 121 2 188 465 66 353 2.30e-105 318
MS.gene84327.t1 MTR_5g054900 54.514 288 121 2 188 465 147 434 2.69e-104 318
MS.gene84327.t1 MTR_7g092750 40.042 477 175 13 19 465 42 437 3.98e-102 313
MS.gene84327.t1 MTR_5g054900 53.819 288 119 3 188 465 66 349 1.84e-101 308
MS.gene84327.t1 MTR_5g054900 53.819 288 119 3 188 465 177 460 2.79e-100 309
MS.gene84327.t1 MTR_0126s0080 42.308 416 164 7 36 417 85 458 9.63e-99 305
MS.gene84327.t1 MTR_1g111310 47.896 309 146 3 168 465 403 707 1.09e-95 305
MS.gene84327.t1 MTR_1g111310 47.475 297 145 3 168 459 36 326 7.55e-85 276
MS.gene84327.t1 MTR_5g060950 49.518 311 146 4 162 462 37 346 6.36e-93 286
MS.gene84327.t1 MTR_8g091650 51.579 285 126 4 190 465 75 356 7.12e-91 281
MS.gene84327.t1 MTR_8g091650 51.773 282 124 4 193 465 5 283 1.12e-90 278
MS.gene84327.t1 MTR_8g091650 51.579 285 126 4 190 465 111 392 5.38e-90 280
MS.gene84327.t1 MTR_3g073560 50.173 289 129 3 190 467 65 349 5.06e-87 279
MS.gene84327.t1 MTR_3g044820 46.774 186 83 4 168 341 27 208 6.11e-55 183
MS.gene84327.t1 MTR_1g090370 32.828 198 112 5 266 458 47 228 5.98e-23 97.8
MS.gene84327.t1 MTR_1g111320 60.274 73 23 1 190 256 146 218 5.42e-18 83.2
MS.gene84327.t1 MTR_8g094690 27.615 239 124 6 257 452 15 247 3.37e-16 79.3
MS.gene84327.t1 MTR_7g068860 24.885 217 143 3 255 455 7 219 1.60e-14 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84327.t1 AT1G08320 59.082 501 177 9 1 493 1 481 0.0 576
MS.gene84327.t1 AT1G08320 59.082 501 177 9 1 493 1 481 0.0 576
MS.gene84327.t1 AT1G08320 59.082 501 177 9 1 493 1 481 0.0 576
MS.gene84327.t1 AT1G08320 66.292 356 118 1 138 493 4 357 1.21e-176 500
MS.gene84327.t1 AT1G08320 66.292 356 118 1 138 493 4 357 1.21e-176 500
MS.gene84327.t1 AT5G06839 45.648 471 183 9 35 466 23 459 1.40e-120 361
MS.gene84327.t1 AT5G06839 57.911 316 109 4 175 466 101 416 1.73e-117 352
MS.gene84327.t1 AT3G12250 55.385 325 132 3 150 465 10 330 2.21e-117 348
MS.gene84327.t1 AT3G12250 55.385 325 132 3 150 465 10 330 2.21e-117 348
MS.gene84327.t1 AT3G12250 55.385 325 132 3 150 465 10 330 2.21e-117 348
MS.gene84327.t1 AT3G12250 55.385 325 132 3 150 465 10 330 2.21e-117 348
MS.gene84327.t1 AT3G12250 58.416 303 108 4 178 465 4 303 2.06e-116 345
MS.gene84327.t1 AT5G06839 57.729 317 109 5 175 466 101 417 3.14e-116 348
MS.gene84327.t1 AT3G12250 58.333 300 113 3 178 465 25 324 3.39e-116 345
MS.gene84327.t1 AT5G06950 57.667 300 115 3 178 465 31 330 7.87e-116 344
MS.gene84327.t1 AT5G06950 57.667 300 115 3 178 465 31 330 7.87e-116 344
MS.gene84327.t1 AT5G06950 57.667 300 115 3 178 465 31 330 7.87e-116 344
MS.gene84327.t1 AT5G06950 57.667 300 115 3 178 465 31 330 7.87e-116 344
MS.gene84327.t1 AT5G06950 57.667 300 115 3 178 465 31 330 7.87e-116 344
MS.gene84327.t1 AT3G12250 58.333 300 113 3 178 465 56 355 5.55e-115 343
MS.gene84327.t1 AT5G06960 59.375 288 108 2 187 465 43 330 1.38e-113 338
MS.gene84327.t1 AT5G06960 59.375 288 108 2 187 465 43 330 1.38e-113 338
MS.gene84327.t1 AT5G06960 59.375 288 108 2 187 465 23 310 2.47e-113 337
MS.gene84327.t1 AT1G22070 56.401 289 117 3 187 466 95 383 3.07e-103 314
MS.gene84327.t1 AT1G77920 51.961 306 137 3 163 465 68 366 6.25e-103 313
MS.gene84327.t1 AT5G10030 53.559 295 124 4 180 465 72 362 5.36e-101 308
MS.gene84327.t1 AT5G10030 53.559 295 124 4 180 465 72 362 5.36e-101 308
MS.gene84327.t1 AT5G10030 53.559 295 124 4 180 465 72 362 5.36e-101 308
MS.gene84327.t1 AT5G10030 53.559 295 124 4 180 465 72 362 5.36e-101 308
MS.gene84327.t1 AT5G10030 53.559 295 124 4 180 465 72 362 5.36e-101 308
MS.gene84327.t1 AT1G68640 55.442 294 116 5 185 465 161 452 7.20e-100 308
MS.gene84327.t1 AT5G65210 51.877 293 132 3 180 465 6 296 3.34e-96 293
MS.gene84327.t1 AT5G65210 51.877 293 132 3 180 465 76 366 3.97e-96 295
MS.gene84327.t1 AT5G65210 51.877 293 132 3 180 465 76 366 3.97e-96 295
MS.gene84327.t1 AT5G65210 51.877 293 132 3 180 465 76 366 3.97e-96 295
MS.gene84327.t1 AT5G65210 51.877 293 132 3 180 465 76 366 3.97e-96 295
MS.gene84327.t1 AT5G65210 51.877 293 132 3 180 465 76 366 3.97e-96 295
MS.gene84327.t1 AT5G65210 51.877 293 132 3 180 465 76 366 3.97e-96 295
MS.gene84327.t1 AT1G58330 26.244 221 148 4 250 455 3 223 2.90e-14 72.4

Find 98 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTGGAAATGTTCCCTTCT+TGG 0.211576 2.2:-12161379 MS.gene84327:CDS
AATCAAGTTCTCCTATTCTT+TGG 0.233116 2.2:+12162052 None:intergenic
TTCATCAGATCATAATAATA+TGG 0.236469 2.2:-12160988 MS.gene84327:CDS
CTGCTAGTGGCTCCAATTGC+TGG 0.291746 2.2:+12157151 None:intergenic
TTAGAGCTCTTAGTTCTCTT+TGG 0.292211 2.2:-12155869 MS.gene84327:CDS
AAGCTGAACGTTGCTTCCTT+TGG 0.305878 2.2:-12158242 MS.gene84327:CDS
ACTAGCAGAGCAGCAGATAA+TGG 0.313627 2.2:-12157136 MS.gene84327:CDS
TAGAGCTCTTAGTTCTCTTT+GGG 0.313649 2.2:-12155868 MS.gene84327:CDS
TCAACTAATCATGTCCCTTA+TGG 0.321296 2.2:-12162012 MS.gene84327:CDS
GAAAAGTCGTCTAAGGAAAA+AGG 0.321473 2.2:-12159878 MS.gene84327:intron
GCAATGTTTGACATGGAATA+TGG 0.352960 2.2:-12158453 MS.gene84327:CDS
TCTCTTGTTGACACCATTGC+TGG 0.353849 2.2:-12157039 MS.gene84327:CDS
CTAGCAGAGCAGCAGATAAT+GGG 0.357751 2.2:-12157135 MS.gene84327:CDS
TTTGCATATCCGTGGTTGTT+TGG 0.361993 2.2:+12155492 None:intergenic
AATTTAAAAGGGTATGTTCA+TGG 0.367637 2.2:-12159604 MS.gene84327:intron
TAGATTAAAGCTTACACAAT+TGG 0.368639 2.2:-12159739 MS.gene84327:CDS
AAGGGTGATTCTTGCTCAAA+AGG 0.370182 2.2:+12161032 None:intergenic
TTACTACTGTTGAGGTTTGA+TGG 0.373913 2.2:+12161345 None:intergenic
CTTGTTATTGGAGAATACTA+TGG 0.375599 2.2:-12155897 MS.gene84327:CDS
GCTGGAGGACCCCTTGTTGA+TGG 0.376451 2.2:-12157021 MS.gene84327:CDS
CCTGAGAGCGTGCTCTTTGA+AGG 0.382110 2.2:+12159709 None:intergenic
TTCCAGTGTAGCAGCAGGTC+TGG 0.387739 2.2:+12161394 None:intergenic
TTTGTTAGGAATGAAGAATC+TGG 0.392918 2.2:-12161876 MS.gene84327:intron
ATGGATTGGAGTGGTGGTGT+TGG 0.398537 2.2:-12159585 MS.gene84327:CDS
TGAGACGTTTAGCACAAAAC+AGG 0.401597 2.2:-12159912 MS.gene84327:CDS
GTGTGAGTAATCGACATAAT+TGG 0.411816 2.2:+12155943 None:intergenic
CGTTGCTTCCTTTGGATTGG+TGG 0.418885 2.2:-12158234 MS.gene84327:CDS
TTCTTAACTCCGTTAATAAA+CGG 0.419059 2.2:+12158409 None:intergenic
CTGCAAGGAAAAGTCGTCTA+AGG 0.422741 2.2:-12159885 MS.gene84327:CDS
GGCAAGCTTGCCAATCTTGA+AGG 0.422961 2.2:-12156973 MS.gene84327:CDS
AGAAGACAACCGTTTATTAA+CGG 0.423518 2.2:-12158418 MS.gene84327:CDS
TCCCTTATGGAATTCATCAT+AGG 0.425244 2.2:-12161999 MS.gene84327:CDS
ATCCAGACCTGCTGCTACAC+TGG 0.426810 2.2:-12161396 MS.gene84327:CDS
TCAGATGTTGATCCAGCAAT+TGG 0.431974 2.2:-12157163 MS.gene84327:intron
CAGGGAGGTGGTAACAAATC+AGG 0.446249 2.2:-12161098 MS.gene84327:CDS
GAACGTTGCTTCCTTTGGAT+TGG 0.451843 2.2:-12158237 MS.gene84327:CDS
GACGTGTTTCATCTTATCAA+TGG 0.455217 2.2:-12158279 MS.gene84327:CDS
TAATACATTAAGCTTGATGA+AGG 0.458878 2.2:+12161967 None:intergenic
ATCCTATGATGAATTCCATA+AGG 0.459315 2.2:+12161997 None:intergenic
AAAAGGGTATGTTCATGGAT+TGG 0.465698 2.2:-12159599 MS.gene84327:intron
CAACAAATGGTTGTTGCCAT+AGG 0.467436 2.2:-12156994 MS.gene84327:CDS
CAACAAGAGACTGTTGCAAC+TGG 0.468138 2.2:+12157052 None:intergenic
TAGACCCTCTGAAATTATCA+TGG 0.469132 2.2:-12158208 MS.gene84327:intron
AAGATTGGCAAGCTTGCCTA+TGG 0.469646 2.2:+12156978 None:intergenic
CAGCAGATAATGGGGATGTA+TGG 0.469706 2.2:-12157126 MS.gene84327:CDS
ACGAAGAAAACCTTCAAGAT+TGG 0.470177 2.2:+12156963 None:intergenic
TGGAATCTCATTGGCCAAGA+AGG 0.473970 2.2:+12161365 None:intergenic
ATGTTCATGGATTGGAGTGG+TGG 0.483245 2.2:-12159591 MS.gene84327:CDS
TCCTATGATGAATTCCATAA+GGG 0.488783 2.2:+12161998 None:intergenic
AGGGTGATTCTTGCTCAAAA+GGG 0.490521 2.2:+12161033 None:intergenic
TGTTGATGGTGTTCAACAAA+TGG 0.493901 2.2:-12157007 MS.gene84327:CDS
CCTTCAAAGAGCACGCTCTC+AGG 0.494782 2.2:-12159709 MS.gene84327:intron
GAGGTTTGATGGAATCTCAT+TGG 0.494784 2.2:+12161356 None:intergenic
AACAACCACGGATATGCAAA+TGG 0.498862 2.2:-12155489 MS.gene84327:CDS
GATTGGAGTGGTGGTGTTGG+AGG 0.512468 2.2:-12159582 MS.gene84327:CDS
ATAAACACCTTTGCATCAAG+TGG 0.519298 2.2:+12160026 None:intergenic
ATCAGCAGCAGCCAAAGAAA+AGG 0.524596 2.2:-12160871 MS.gene84327:intron
ACTAACCATGATAATTTCAG+AGG 0.533906 2.2:+12158203 None:intergenic
CACAAAACAGGGAGGCTGCA+AGG 0.543811 2.2:-12159900 MS.gene84327:CDS
AACATTTCCAGTGTAGCAGC+AGG 0.549096 2.2:+12161389 None:intergenic
ATTATCTGCTGCTCTGCTAG+TGG 0.553911 2.2:+12157138 None:intergenic
CTTGTTGACACCATTGCTGG+AGG 0.554730 2.2:-12157036 MS.gene84327:CDS
ATTACTCACACTTCGTCAAG+CGG 0.557736 2.2:-12155931 MS.gene84327:CDS
AATTGAAGGCTGATAACTTG+AGG 0.558228 2.2:-12155980 MS.gene84327:intron
TTATTAACGGAGTTAAGAAA+CGG 0.562286 2.2:-12158405 MS.gene84327:CDS
GATCAAATATTTAGACTCAA+AGG 0.563784 2.2:-12158318 MS.gene84327:CDS
GGAATCTCATTGGCCAAGAA+GGG 0.563800 2.2:+12161366 None:intergenic
AGATAAGCCACTTGATGCAA+AGG 0.567470 2.2:-12160033 MS.gene84327:intron
GTCTAAAACCACCAATCCAA+AGG 0.567699 2.2:+12158226 None:intergenic
AGAGAGTATTACTACTGTTG+AGG 0.572603 2.2:+12161337 None:intergenic
TTTGTGAAATGATTCTGAGA+AGG 0.574512 2.2:+12155461 None:intergenic
GCAGAGGAAGCTCTCTCACA+AGG 0.575222 2.2:-12157081 MS.gene84327:CDS
AACAAGGGGTCCTCCAGCAA+TGG 0.575749 2.2:+12157026 None:intergenic
TTGACATGGAATATGGAAGA+TGG 0.583833 2.2:-12158446 MS.gene84327:CDS
TTGAACCATTTGCATATCCG+TGG 0.584485 2.2:+12155484 None:intergenic
TTTGTTGAACACCATCAACA+AGG 0.585380 2.2:+12157010 None:intergenic
TGCATGGCGAGCCAAAGAAT+AGG 0.589611 2.2:-12162063 MS.gene84327:CDS
AGATAATGAAATGAGAGTAA+TGG 0.594040 2.2:-12158364 MS.gene84327:CDS
TATTTGATTCTGTGATGAAG+AGG 0.598778 2.2:+12160893 None:intergenic
GAAATGAGAGTAATGGTGGA+TGG 0.599016 2.2:-12158357 MS.gene84327:CDS
ATATATTTAACTTACTCTCG+TGG 0.607255 2.2:+12155837 None:intergenic
TTCATCTTATCAATGGCATG+TGG 0.610713 2.2:-12158272 MS.gene84327:CDS
TAATGAAATGAGAGTAATGG+TGG 0.614982 2.2:-12158361 MS.gene84327:CDS
TTGTTGAACACCATCAACAA+GGG 0.615909 2.2:+12157011 None:intergenic
AATTTGGAAATACAGGGAGG+TGG 0.625564 2.2:-12161110 MS.gene84327:intron
GTTAAGAAACGGATTGCAAG+CGG 0.631491 2.2:-12158394 MS.gene84327:CDS
GTTGGAGGCAATATAAGCTC+TGG 0.639351 2.2:-12159567 MS.gene84327:intron
TAGCAGAGCAGCAGATAATG+GGG 0.639568 2.2:-12157134 MS.gene84327:CDS
GCATTCTTCACAGCAAGCAG+AGG 0.646463 2.2:-12157097 MS.gene84327:CDS
GAGACGTTTAGCACAAAACA+GGG 0.648005 2.2:-12159911 MS.gene84327:CDS
AGGAGGTGCAATGTTTGACA+TGG 0.651643 2.2:-12158460 MS.gene84327:CDS
TGTTGAACACCATCAACAAG+GGG 0.659117 2.2:+12157012 None:intergenic
CTAACCATGATAATTTCAGA+GGG 0.659541 2.2:+12158204 None:intergenic
TAACTCATGCCAAACAACCA+CGG 0.685861 2.2:-12155501 MS.gene84327:CDS
GGAGGTGGTAACAAATCAGG+AGG 0.698135 2.2:-12161095 MS.gene84327:CDS
TAATGGGGATGTATGGACTG+AGG 0.699689 2.2:-12157119 MS.gene84327:CDS
GGTATGTTCATGGATTGGAG+TGG 0.755721 2.2:-12159594 MS.gene84327:CDS
ACGTTTAGCACAAAACAGGG+AGG 0.779708 2.2:-12159908 MS.gene84327:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATAAAGTTAATAGATT+AGG - chr2.2:12155982-12156001 MS.gene84327:intron 10.0%
!! ATTATATATTTACATTTAGT+TGG - chr2.2:12161705-12161724 MS.gene84327:intron 10.0%
!! GAATTATAAAAATATACAAT+AGG - chr2.2:12158207-12158226 MS.gene84327:intron 10.0%
!! TAATAAAGGAATTATATTAT+GGG - chr2.2:12159415-12159434 MS.gene84327:intron 10.0%
!! TAATTAAAGATAAAGAAAAA+TGG + chr2.2:12161913-12161932 None:intergenic 10.0%
!! TATTTATTACTAAAAAAAAG+TGG + chr2.2:12158741-12158760 None:intergenic 10.0%
!! TTAATAAAGGAATTATATTA+TGG - chr2.2:12159414-12159433 MS.gene84327:intron 10.0%
!! TTATTGTAATAATAAATTGT+AGG - chr2.2:12159034-12159053 MS.gene84327:intron 10.0%
!! TTGAATATAACAAAATAAAT+TGG + chr2.2:12161971-12161990 None:intergenic 10.0%
!!! ATTTTAACTGTTAATTTAAA+AGG - chr2.2:12157898-12157917 MS.gene84327:intron 10.0%
!!! GAGTTTATATATTTTAAAAA+AGG + chr2.2:12158258-12158277 None:intergenic 10.0%
!!! TACTAGTAATTTATTATTTT+TGG - chr2.2:12158058-12158077 MS.gene84327:intron 10.0%
!!! TGAGTTTTTTTTTTTTTTTT+TGG - chr2.2:12160088-12160107 MS.gene84327:intron 10.0%
!!! TTTTAACTGTTAATTTAAAA+GGG - chr2.2:12157899-12157918 MS.gene84327:intron 10.0%
!! AATAAATTACTAGTAAATGA+TGG + chr2.2:12158053-12158072 None:intergenic 15.0%
!! AGTTATTTATTCATAGATTT+CGG + chr2.2:12158178-12158197 None:intergenic 15.0%
!! GTATAGTCAAATAATTTAAT+CGG + chr2.2:12156374-12156393 None:intergenic 15.0%
!! TAAGCATAATTAAAATAGAT+TGG + chr2.2:12156211-12156230 None:intergenic 15.0%
!! TAATCACAAGAAATTAAATT+TGG - chr2.2:12158883-12158902 MS.gene84327:intron 15.0%
!! TTTACCAAAATAATTGTAAA+AGG + chr2.2:12156026-12156045 None:intergenic 15.0%
!!! AAATTTAAAGCCTTTTATTT+TGG - chr2.2:12156046-12156065 MS.gene84327:intron 15.0%
!!! ATTGAATTGAATTTTTCTAT+AGG - chr2.2:12157727-12157746 MS.gene84327:intron 15.0%
!!! CATTGTTTCAAATTATTTTT+TGG - chr2.2:12158525-12158544 MS.gene84327:intron 15.0%
!!! GTTGAAATACATTTTAATTA+TGG - chr2.2:12161753-12161772 MS.gene84327:intron 15.0%
!!! TTATTTTGTTATATTCAAAC+AGG - chr2.2:12161973-12161992 MS.gene84327:CDS 15.0%
!!! TTTACATTTTGATATTATGT+CGG + chr2.2:12158953-12158972 None:intergenic 15.0%
!!! TTTTTTTTGTTGTAGAAAAA+AGG - chr2.2:12157443-12157462 MS.gene84327:intron 15.0%
!! AAAAGCCAAAGTATATATAA+AGG + chr2.2:12158682-12158701 None:intergenic 20.0%
!! AAAATGTTTCATTCAAAAGT+TGG - chr2.2:12161168-12161187 MS.gene84327:intron 20.0%
!! AATGTGAAACTTCTTAATAA+AGG - chr2.2:12159401-12159420 MS.gene84327:intron 20.0%
!! GTATCTATATCTATATGTAT+AGG + chr2.2:12157671-12157690 None:intergenic 20.0%
!! TTAATGAATGAAATCAATGT+CGG - chr2.2:12159906-12159925 MS.gene84327:CDS 20.0%
!! TTCATCAGATCATAATAATA+TGG - chr2.2:12156526-12156545 MS.gene84327:intron 20.0%
!! TTGTAATAATAAATTGTAGG+AGG - chr2.2:12159037-12159056 MS.gene84327:intron 20.0%
!!! AAAAAATGCACTTTAAGAAA+AGG - chr2.2:12158825-12158844 MS.gene84327:intron 20.0%
!!! AAAAGAGTGTGTATTATAAA+GGG + chr2.2:12159884-12159903 None:intergenic 20.0%
!!! AAGTACTGTTTTATTCATTT+TGG - chr2.2:12155577-12155596 MS.gene84327:intron 20.0%
!!! AATGTTTTTGTTTGTTTGTT+AGG - chr2.2:12155624-12155643 MS.gene84327:intron 20.0%
!!! AGTGATTATGTTAGTTTTTA+GGG + chr2.2:12161327-12161346 None:intergenic 20.0%
!!! ATACTTTTGAACATAAACAT+TGG + chr2.2:12158233-12158252 None:intergenic 20.0%
!!! ATATGCTAATGTTGATAATT+TGG - chr2.2:12160323-12160342 MS.gene84327:intron 20.0%
!!! ATTGTTATTGACGATTTTAT+TGG - chr2.2:12160604-12160623 MS.gene84327:intron 20.0%
!!! CATATTAATTGTGAAGATTT+TGG + chr2.2:12159008-12159027 None:intergenic 20.0%
!!! CATTCATATTTTTCAATTGA+AGG - chr2.2:12161520-12161539 MS.gene84327:intron 20.0%
!!! GATACCTTTTACAATTATTT+TGG - chr2.2:12156019-12156038 MS.gene84327:intron 20.0%
!!! TAAAAGAGTGTGTATTATAA+AGG + chr2.2:12159885-12159904 None:intergenic 20.0%
!!! TAGTGATTATGTTAGTTTTT+AGG + chr2.2:12161328-12161347 None:intergenic 20.0%
!!! TTGAATGAAACATTTTAAGA+TGG + chr2.2:12161164-12161183 None:intergenic 20.0%
!!! TTTACTATTAACCTTTTCTT+TGG + chr2.2:12156657-12156676 None:intergenic 20.0%
!!! TTTTTAACAACTTGTAACAA+AGG - chr2.2:12159649-12159668 MS.gene84327:intron 20.0%
! AAAAAAGTGAGTGTCATATT+GGG - chr2.2:12159971-12159990 MS.gene84327:intron 25.0%
! AAAGTCAAAACTTGATCTTA+TGG - chr2.2:12158114-12158133 MS.gene84327:intron 25.0%
! AACTATTTCAAATGAGAAGT+TGG + chr2.2:12159604-12159623 None:intergenic 25.0%
! AAGAAACAGTTCACAAAAAA+TGG - chr2.2:12157091-12157110 MS.gene84327:CDS 25.0%
! AAGTCAAAACTTGATCTTAT+GGG - chr2.2:12158115-12158134 MS.gene84327:intron 25.0%
! AATCATCTTCAATGTGATAA+GGG + chr2.2:12157139-12157158 None:intergenic 25.0%
! ACTTTATATTTCAGCAGTTA+TGG + chr2.2:12155973-12155992 None:intergenic 25.0%
! AGATAATGAAATGAGAGTAA+TGG - chr2.2:12159150-12159169 MS.gene84327:intron 25.0%
! AGCAAAATTATAACACCATT+TGG + chr2.2:12161855-12161874 None:intergenic 25.0%
! AGCAATATTCAAACTATATG+TGG + chr2.2:12160679-12160698 None:intergenic 25.0%
! AGTCTCCTTTATATATACTT+TGG - chr2.2:12158674-12158693 MS.gene84327:intron 25.0%
! ATAGATCACAAGGAAATAAT+GGG + chr2.2:12160745-12160764 None:intergenic 25.0%
! CAAAAATGTGCACATAAAAA+TGG + chr2.2:12157354-12157373 None:intergenic 25.0%
! CAGATAATAAAATGTTAGGT+AGG + chr2.2:12160812-12160831 None:intergenic 25.0%
! CTATACTAATGATCTGAATT+TGG - chr2.2:12156388-12156407 MS.gene84327:intron 25.0%
! GAAAGAAAGAAAAAAAGCAA+AGG - chr2.2:12155817-12155836 MS.gene84327:intron 25.0%
! GATCAAATATTTAGACTCAA+AGG - chr2.2:12159196-12159215 MS.gene84327:intron 25.0%
! GCAATAATTTACTGTTACAT+TGG + chr2.2:12160254-12160273 None:intergenic 25.0%
! GTACCAGATAATAAAATGTT+AGG + chr2.2:12160816-12160835 None:intergenic 25.0%
! TAAAAAAGTGAGTGTCATAT+TGG - chr2.2:12159970-12159989 MS.gene84327:intron 25.0%
! TAATACATTAAGCTTGATGA+AGG + chr2.2:12155550-12155569 None:intergenic 25.0%
! TAGATTAAAGCTTACACAAT+TGG - chr2.2:12157775-12157794 MS.gene84327:intron 25.0%
! TAGTTTATACACGATAGAAA+AGG + chr2.2:12158299-12158318 None:intergenic 25.0%
! TCAGTAAAAATCATGCAAAA+GGG + chr2.2:12155948-12155967 None:intergenic 25.0%
! TTAATTTCATGCATGTTTGT+AGG - chr2.2:12161731-12161750 MS.gene84327:intron 25.0%
! TTATTAACGGAGTTAAGAAA+CGG - chr2.2:12159109-12159128 MS.gene84327:intron 25.0%
! TTCTTAACTCCGTTAATAAA+CGG + chr2.2:12159108-12159127 None:intergenic 25.0%
! TTGAATTTGTACTATCTTCT+TGG - chr2.2:12156784-12156803 MS.gene84327:intron 25.0%
! TTTCTTGTGATTAAACAAAG+TGG + chr2.2:12158876-12158895 None:intergenic 25.0%
!! AAAGAGTGTGTATTATAAAG+GGG + chr2.2:12159883-12159902 None:intergenic 25.0%
!! AATCATTATGGTATTGGAAA+TGG + chr2.2:12155872-12155891 None:intergenic 25.0%
!! AATTTAAAAGGGTATGTTCA+TGG - chr2.2:12157910-12157929 MS.gene84327:intron 25.0%
!! ATATATTAAAGCTGCTTTCA+AGG - chr2.2:12158318-12158337 MS.gene84327:CDS 25.0%
!! ATATATTTAACTTACTCTCG+TGG + chr2.2:12161680-12161699 None:intergenic 25.0%
!! CTACCTAACATTTTATTATC+TGG - chr2.2:12160810-12160829 MS.gene84327:intron 25.0%
!! TATATTAAAGCTGCTTTCAA+GGG - chr2.2:12158319-12158338 MS.gene84327:CDS 25.0%
!! TGTTGATGTTTTATATGCTA+AGG - chr2.2:12157554-12157573 MS.gene84327:intron 25.0%
!! TTTCAACTATTTTCCCTTAT+TGG - chr2.2:12161457-12161476 MS.gene84327:intron 25.0%
!!! AGAAGATGCTTTTTTACTTA+AGG + chr2.2:12156504-12156523 None:intergenic 25.0%
!!! CTTTTTTGCAATTTGAATCA+AGG - chr2.2:12160701-12160720 MS.gene84327:intron 25.0%
!!! GAAGATGCTTTTTTACTTAA+GGG + chr2.2:12156503-12156522 None:intergenic 25.0%
!!! TTGATTTTCTGAAATCTGTT+GGG + chr2.2:12156831-12156850 None:intergenic 25.0%
!!! TTTGATTTTCTGAAATCTGT+TGG + chr2.2:12156832-12156851 None:intergenic 25.0%
AAAAAGTGAGTGTCATATTG+GGG - chr2.2:12159972-12159991 MS.gene84327:intron 30.0%
AATAAAGCAGTAGCTAGTAT+AGG - chr2.2:12161368-12161387 MS.gene84327:CDS 30.0%
AATCAAGTTCTCCTATTCTT+TGG + chr2.2:12155465-12155484 None:intergenic 30.0%
AATGGTTAAACAAATGAGTG+AGG + chr2.2:12157336-12157355 None:intergenic 30.0%
ACTAACCATGATAATTTCAG+AGG + chr2.2:12159314-12159333 None:intergenic 30.0%
AGAAGACAACCGTTTATTAA+CGG - chr2.2:12159096-12159115 MS.gene84327:intron 30.0%
AGAGGATCAACCAAAATAAA+AGG + chr2.2:12156059-12156078 None:intergenic 30.0%
AGATAAGCAATAAGCCAATA+AGG + chr2.2:12161474-12161493 None:intergenic 30.0%
AGTAGTTAACTCATTTCTTG+AGG - chr2.2:12161263-12161282 MS.gene84327:intron 30.0%
ATCCTATGATGAATTCCATA+AGG + chr2.2:12155520-12155539 None:intergenic 30.0%
ATGGTTAAACAAATGAGTGA+GGG + chr2.2:12157335-12157354 None:intergenic 30.0%
CAAACTTTCCCTTAGTTTAT+GGG + chr2.2:12156740-12156759 None:intergenic 30.0%
CAATCATCTTCAATGTGATA+AGG + chr2.2:12157140-12157159 None:intergenic 30.0%
CATAGATCACAAGGAAATAA+TGG + chr2.2:12160746-12160765 None:intergenic 30.0%
CATCAAAGAAAAAATCTGAG+AGG + chr2.2:12156077-12156096 None:intergenic 30.0%
CCCTTAAATTCAATCAAGAT+CGG + chr2.2:12160856-12160875 None:intergenic 30.0%
CCGATCTTGATTGAATTTAA+GGG - chr2.2:12160853-12160872 MS.gene84327:intron 30.0%
CCTTAAATTCAATCAAGATC+GGG + chr2.2:12160855-12160874 None:intergenic 30.0%
CTAACCATGATAATTTCAGA+GGG + chr2.2:12159313-12159332 None:intergenic 30.0%
CTATGAGTTAGCAACATAAT+TGG + chr2.2:12161054-12161073 None:intergenic 30.0%
CTGCAAAAGAAATATTCAAG+TGG + chr2.2:12158347-12158366 None:intergenic 30.0%
GATAAGCAATAAGCCAATAA+GGG + chr2.2:12161473-12161492 None:intergenic 30.0%
GATATAACAACGTACATTTG+TGG + chr2.2:12160790-12160809 None:intergenic 30.0%
GATCTGAATTTGGAAATACA+GGG - chr2.2:12156398-12156417 MS.gene84327:intron 30.0%
GGTTACGTTTAGACATAAAT+AGG - chr2.2:12160127-12160146 MS.gene84327:intron 30.0%
GTCAGTAAAAATCATGCAAA+AGG + chr2.2:12155949-12155968 None:intergenic 30.0%
TAACAACTTGTAACAAAGGA+TGG - chr2.2:12159653-12159672 MS.gene84327:intron 30.0%
TAATGAAATGAGAGTAATGG+TGG - chr2.2:12159153-12159172 MS.gene84327:intron 30.0%
TATTTGATTCTGTGATGAAG+AGG + chr2.2:12156624-12156643 None:intergenic 30.0%
TCCTATGATGAATTCCATAA+GGG + chr2.2:12155519-12155538 None:intergenic 30.0%
TGATCTGAATTTGGAAATAC+AGG - chr2.2:12156397-12156416 MS.gene84327:intron 30.0%
TTAAATTACCTCCACTACTT+TGG - chr2.2:12161011-12161030 MS.gene84327:CDS 30.0%
TTATTTCCTTGTGATCTATG+TGG - chr2.2:12160746-12160765 MS.gene84327:intron 30.0%
TTCAACCAAGAACAAAAAGA+TGG + chr2.2:12157237-12157256 None:intergenic 30.0%
TTCCATATCCCATAAACTAA+GGG - chr2.2:12156729-12156748 MS.gene84327:intron 30.0%
TTTCCATATCCCATAAACTA+AGG - chr2.2:12156728-12156747 MS.gene84327:intron 30.0%
TTTGTTAGGAATGAAGAATC+TGG - chr2.2:12155638-12155657 MS.gene84327:intron 30.0%
! CAACTCTTTCTAAAAGTAGA+GGG - chr2.2:12155795-12155814 MS.gene84327:intron 30.0%
! GATATTTTTCATGTGCCAAA+TGG - chr2.2:12161837-12161856 MS.gene84327:CDS 30.0%
! GTACACACTAATTTGCATTA+AGG - chr2.2:12160291-12160310 MS.gene84327:intron 30.0%
! TCTAAGGTCAGAAAATAAAG+TGG + chr2.2:12155765-12155784 None:intergenic 30.0%
! TGAATATTTCTTTTGCAGCT+TGG - chr2.2:12158349-12158368 MS.gene84327:CDS 30.0%
! TTTGTGAAATGATTCTGAGA+AGG + chr2.2:12162056-12162075 None:intergenic 30.0%
! TTTTGCAGCTTGGATTAATT+TGG - chr2.2:12158359-12158378 MS.gene84327:CDS 30.0%
!! AATTTGGCTCTCTATCTTTA+GGG - chr2.2:12158375-12158394 MS.gene84327:CDS 30.0%
!! CTTGTTATTGGAGAATACTA+TGG - chr2.2:12161617-12161636 MS.gene84327:intron 30.0%
!! TAATTTGGCTCTCTATCTTT+AGG - chr2.2:12158374-12158393 MS.gene84327:CDS 30.0%
!! TGATATTATGTCGGTTGTTT+TGG + chr2.2:12158944-12158963 None:intergenic 30.0%
!!! AAGTTGGTTTTAGAAAGTGA+TGG - chr2.2:12161184-12161203 MS.gene84327:intron 30.0%
!!! GAAGAATCTGGTTTTGATTT+TGG - chr2.2:12155650-12155669 MS.gene84327:intron 30.0%
AATTGAAGGCTGATAACTTG+AGG - chr2.2:12161534-12161553 MS.gene84327:intron 35.0%
ACGAAGAAAACCTTCAAGAT+TGG + chr2.2:12160554-12160573 None:intergenic 35.0%
AGCACCTAAAATCTCATAGA+GGG - chr2.2:12158648-12158667 MS.gene84327:intron 35.0%
ATAAACACCTTTGCATCAAG+TGG + chr2.2:12157491-12157510 None:intergenic 35.0%
ATGTGATAAGGGTAGCAAAA+TGG + chr2.2:12157128-12157147 None:intergenic 35.0%
ATTGCATTCCTACTGAGAAA+TGG - chr2.2:12157156-12157175 MS.gene84327:CDS 35.0%
CATCATGTTGCTCAAAAGTT+AGG - chr2.2:12161116-12161135 MS.gene84327:intron 35.0%
CCAAACTTTCCCTTAGTTTA+TGG + chr2.2:12156741-12156760 None:intergenic 35.0%
CCAATACCATAATGATTCTG+AGG - chr2.2:12155875-12155894 MS.gene84327:CDS 35.0%
CCATAAACTAAGGGAAAGTT+TGG - chr2.2:12156738-12156757 MS.gene84327:intron 35.0%
CCCGATCTTGATTGAATTTA+AGG - chr2.2:12160852-12160871 MS.gene84327:intron 35.0%
CCTCAGAATCATTATGGTAT+TGG + chr2.2:12155878-12155897 None:intergenic 35.0%
CTATTGCCTCAGAATCATTA+TGG + chr2.2:12155884-12155903 None:intergenic 35.0%
GAAAAGTCGTCTAAGGAAAA+AGG - chr2.2:12157636-12157655 MS.gene84327:intron 35.0%
GACGTGTTTCATCTTATCAA+TGG - chr2.2:12159235-12159254 MS.gene84327:intron 35.0%
GACTAAGTAGTGCAATAATG+TGG + chr2.2:12158920-12158939 None:intergenic 35.0%
GCAATGTTTGACATGGAATA+TGG - chr2.2:12159061-12159080 MS.gene84327:intron 35.0%
GGAAATGAGCAGTATCATAA+TGG + chr2.2:12158720-12158739 None:intergenic 35.0%
GTGTGAGTAATCGACATAAT+TGG + chr2.2:12161574-12161593 None:intergenic 35.0%
TAAACGAATCGATACGACAA+GGG + chr2.2:12156327-12156346 None:intergenic 35.0%
TCAACTAATCATGTCCCTTA+TGG - chr2.2:12155502-12155521 MS.gene84327:CDS 35.0%
TCATATTGGGGTGTATAAGA+TGG - chr2.2:12159984-12160003 MS.gene84327:intron 35.0%
TCCCTTATGGAATTCATCAT+AGG - chr2.2:12155515-12155534 MS.gene84327:CDS 35.0%
TGCTCAAAAGTTAGGTCATA+AGG - chr2.2:12161124-12161143 MS.gene84327:intron 35.0%
TTAAACGAATCGATACGACA+AGG + chr2.2:12156328-12156347 None:intergenic 35.0%
TTACTACTGTTGAGGTTTGA+TGG + chr2.2:12156172-12156191 None:intergenic 35.0%
TTCATCTTATCAATGGCATG+TGG - chr2.2:12159242-12159261 MS.gene84327:intron 35.0%
TTCATGTCAGAAAATCGTTC+AGG + chr2.2:12156877-12156896 None:intergenic 35.0%
TTCCCTTAGTTTATGGGATA+TGG + chr2.2:12156734-12156753 None:intergenic 35.0%
TTGACATGGAATATGGAAGA+TGG - chr2.2:12159068-12159087 MS.gene84327:intron 35.0%
TTGTTGAACACCATCAACAA+GGG + chr2.2:12160506-12160525 None:intergenic 35.0%
TTGTTGTAGAAAAAAGGAGC+TGG - chr2.2:12157449-12157468 MS.gene84327:intron 35.0%
TTTGTTGAACACCATCAACA+AGG + chr2.2:12160507-12160526 None:intergenic 35.0%
! AAAAGGGTATGTTCATGGAT+TGG - chr2.2:12157915-12157934 MS.gene84327:intron 35.0%
! CCAACTCTTTCTAAAAGTAG+AGG - chr2.2:12155794-12155813 MS.gene84327:intron 35.0%
! CTAACTTTTGAGCAACATGA+TGG + chr2.2:12161118-12161137 None:intergenic 35.0%
! GAGTTGGTTATGCTTATCTA+AGG + chr2.2:12155781-12155800 None:intergenic 35.0%
! GTTTTGCAAGGAGTTAAGAA+TGG - chr2.2:12155692-12155711 MS.gene84327:intron 35.0%
! TAGAGCTCTTAGTTCTCTTT+GGG - chr2.2:12161646-12161665 MS.gene84327:intron 35.0%
! TATGCCCTCTATGAGATTTT+AGG + chr2.2:12158655-12158674 None:intergenic 35.0%
! TCATGCCATCTTTTTGTTCT+TGG - chr2.2:12157229-12157248 MS.gene84327:intron 35.0%
! TTAGAGCTCTTAGTTCTCTT+TGG - chr2.2:12161645-12161664 MS.gene84327:intron 35.0%
!! AGAGAGTATTACTACTGTTG+AGG + chr2.2:12156180-12156199 None:intergenic 35.0%
!! ATTTGGCTCTCTATCTTTAG+GGG - chr2.2:12158376-12158395 MS.gene84327:CDS 35.0%
!! CCTCTACTTTTAGAAAGAGT+TGG + chr2.2:12155797-12155816 None:intergenic 35.0%
!! CTGAAAGAGCTTTGTCTTTT+AGG - chr2.2:12161295-12161314 MS.gene84327:intron 35.0%
!! GAAGAAGCAATTGTTTTGCA+AGG - chr2.2:12155680-12155699 MS.gene84327:intron 35.0%
!! TAGACCCTCTGAAATTATCA+TGG - chr2.2:12159306-12159325 MS.gene84327:intron 35.0%
!! TGTTGATGGTGTTCAACAAA+TGG - chr2.2:12160507-12160526 MS.gene84327:intron 35.0%
!!! GAACTTGATTTTTCTGAGAC+AGG - chr2.2:12155475-12155494 MS.gene84327:CDS 35.0%
AACAACCACGGATATGCAAA+TGG - chr2.2:12162025-12162044 MS.gene84327:CDS 40.0%
AAGGGTGATTCTTGCTCAAA+AGG + chr2.2:12156485-12156504 None:intergenic 40.0%
AATCATGCAAAAGGGAAGTG+AGG + chr2.2:12155940-12155959 None:intergenic 40.0%
AATTTGGAAATACAGGGAGG+TGG - chr2.2:12156404-12156423 MS.gene84327:intron 40.0%
AGATAAGCCACTTGATGCAA+AGG - chr2.2:12157481-12157500 MS.gene84327:intron 40.0%
AGGGTGATTCTTGCTCAAAA+GGG + chr2.2:12156484-12156503 None:intergenic 40.0%
AGTAGTGCAATAATGTGGCA+AGG + chr2.2:12158915-12158934 None:intergenic 40.0%
ATTACTCACACTTCGTCAAG+CGG - chr2.2:12161583-12161602 MS.gene84327:intron 40.0%
CAACAAATGGTTGTTGCCAT+AGG - chr2.2:12160520-12160539 MS.gene84327:intron 40.0%
CAGAAAATCGTTCAGGAATC+AGG + chr2.2:12156870-12156889 None:intergenic 40.0%
CCATTTGACCATTTCTCAGT+AGG + chr2.2:12157167-12157186 None:intergenic 40.0%
CCTACTGAGAAATGGTCAAA+TGG - chr2.2:12157164-12157183 MS.gene84327:intron 40.0%
CTGAATTTGGAAATACAGGG+AGG - chr2.2:12156401-12156420 MS.gene84327:intron 40.0%
CTTATGAGAAAGTGACGTTG+TGG + chr2.2:12160192-12160211 None:intergenic 40.0%
GAGACGTTTAGCACAAAACA+GGG - chr2.2:12157603-12157622 MS.gene84327:intron 40.0%
GAGCACCTAAAATCTCATAG+AGG - chr2.2:12158647-12158666 MS.gene84327:intron 40.0%
GAGGTTTGATGGAATCTCAT+TGG + chr2.2:12156161-12156180 None:intergenic 40.0%
GTTGTCATATGTCAGTTGTG+TGG - chr2.2:12160211-12160230 MS.gene84327:intron 40.0%
TAACTCATGCCAAACAACCA+CGG - chr2.2:12162013-12162032 MS.gene84327:CDS 40.0%
TCAGATGTTGATCCAGCAAT+TGG - chr2.2:12160351-12160370 MS.gene84327:intron 40.0%
TGAGACGTTTAGCACAAAAC+AGG - chr2.2:12157602-12157621 MS.gene84327:intron 40.0%
TGTTGAACACCATCAACAAG+GGG + chr2.2:12160505-12160524 None:intergenic 40.0%
TTGAACCATTTGCATATCCG+TGG + chr2.2:12162033-12162052 None:intergenic 40.0%
TTTGCATATCCGTGGTTGTT+TGG + chr2.2:12162025-12162044 None:intergenic 40.0%
TTTGGTGAAGAAAGAGCTTG+TGG - chr2.2:12160106-12160125 MS.gene84327:intron 40.0%
! GAAATGAGAGTAATGGTGGA+TGG - chr2.2:12159157-12159176 MS.gene84327:intron 40.0%
! GTCTAAAACCACCAATCCAA+AGG + chr2.2:12159291-12159310 None:intergenic 40.0%
! TCTTGAAGGTTTTCTTCGTC+AGG - chr2.2:12160555-12160574 MS.gene84327:intron 40.0%
!! GATTCTGAGGCAATAGACAT+GGG - chr2.2:12155888-12155907 MS.gene84327:CDS 40.0%
!! GCACGCTCTTTTCTTGTTAT+TGG - chr2.2:12161605-12161624 MS.gene84327:intron 40.0%
!! GTTAAGAAACGGATTGCAAG+CGG - chr2.2:12159120-12159139 MS.gene84327:intron 40.0%
!! TGATTCTGAGGCAATAGACA+TGG - chr2.2:12155887-12155906 MS.gene84327:CDS 40.0%
AACATTTCCAGTGTAGCAGC+AGG + chr2.2:12156128-12156147 None:intergenic 45.0%
AAGATTGGCAAGCTTGCCTA+TGG + chr2.2:12160539-12160558 None:intergenic 45.0%
AAGCTGAACGTTGCTTCCTT+TGG - chr2.2:12159272-12159291 MS.gene84327:intron 45.0%
AAGGTGTGGGGTTACAAACT+TGG - chr2.2:12155911-12155930 MS.gene84327:CDS 45.0%
ACGTTTAGCACAAAACAGGG+AGG - chr2.2:12157606-12157625 MS.gene84327:intron 45.0%
ACTAGCAGAGCAGCAGATAA+TGG - chr2.2:12160378-12160397 MS.gene84327:intron 45.0%
AGAGAGAGAGAGTGAAGGAT+AGG - chr2.2:12156919-12156938 MS.gene84327:intron 45.0%
ATCAGCAGCAGCCAAAGAAA+AGG - chr2.2:12156643-12156662 MS.gene84327:intron 45.0%
ATGCAGCCACATAGATCACA+AGG + chr2.2:12160755-12160774 None:intergenic 45.0%
ATTATCTGCTGCTCTGCTAG+TGG + chr2.2:12160379-12160398 None:intergenic 45.0%
CAACAAGAGACTGTTGCAAC+TGG + chr2.2:12160465-12160484 None:intergenic 45.0%
CACTGGAAATGTTCCCTTCT+TGG - chr2.2:12156135-12156154 MS.gene84327:intron 45.0%
CTAGCAGAGCAGCAGATAAT+GGG - chr2.2:12160379-12160398 MS.gene84327:intron 45.0%
CTGCAAGGAAAAGTCGTCTA+AGG - chr2.2:12157629-12157648 MS.gene84327:intron 45.0%
GAACGTTGCTTCCTTTGGAT+TGG - chr2.2:12159277-12159296 MS.gene84327:intron 45.0%
GGAATCTCATTGGCCAAGAA+GGG + chr2.2:12156151-12156170 None:intergenic 45.0%
GTTGGAGGCAATATAAGCTC+TGG - chr2.2:12157947-12157966 MS.gene84327:intron 45.0%
TAGCAGAGCAGCAGATAATG+GGG - chr2.2:12160380-12160399 MS.gene84327:intron 45.0%
TCTCTTGTTGACACCATTGC+TGG - chr2.2:12160475-12160494 MS.gene84327:intron 45.0%
TGACGTGACAACCAAAGTAG+TGG + chr2.2:12161025-12161044 None:intergenic 45.0%
TGGAATCTCATTGGCCAAGA+AGG + chr2.2:12156152-12156171 None:intergenic 45.0%
! AATAGACATGGGAAGGTGTG+GGG - chr2.2:12155899-12155918 MS.gene84327:CDS 45.0%
! AGGAGGTGCAATGTTTGACA+TGG - chr2.2:12159054-12159073 MS.gene84327:intron 45.0%
! CAATAGACATGGGAAGGTGT+GGG - chr2.2:12155898-12155917 MS.gene84327:CDS 45.0%
! TAATGGGGATGTATGGACTG+AGG - chr2.2:12160395-12160414 MS.gene84327:intron 45.0%
!! ATGTTCATGGATTGGAGTGG+TGG - chr2.2:12157923-12157942 MS.gene84327:intron 45.0%
!! CAGCAGATAATGGGGATGTA+TGG - chr2.2:12160388-12160407 MS.gene84327:intron 45.0%
!! GGTATGTTCATGGATTGGAG+TGG - chr2.2:12157920-12157939 MS.gene84327:intron 45.0%
!! AATTAAATAAAACTTATATA+TGG - chr2.2:12157416-12157435 MS.gene84327:intron 5.0%
!! TTAATTACAAATTAATTATA+TGG + chr2.2:12159357-12159376 None:intergenic 5.0%
!!! TAATTAATTTGTAATTAATT+TGG - chr2.2:12159359-12159378 MS.gene84327:intron 5.0%
CAGGGAGGTGGTAACAAATC+AGG - chr2.2:12156416-12156435 MS.gene84327:intron 50.0%
CGTGACAACCAAAGTAGTGG+AGG + chr2.2:12161022-12161041 None:intergenic 50.0%
CTGAGGCAATAGACATGGGA+AGG - chr2.2:12155892-12155911 MS.gene84327:CDS 50.0%
CTTGTTGACACCATTGCTGG+AGG - chr2.2:12160478-12160497 MS.gene84327:intron 50.0%
GAGAGAGAGAGAGAGAGTGA+AGG - chr2.2:12156914-12156933 MS.gene84327:intron 50.0%
GCAATAGACATGGGAAGGTG+TGG - chr2.2:12155897-12155916 MS.gene84327:CDS 50.0%
GCATTCTTCACAGCAAGCAG+AGG - chr2.2:12160417-12160436 MS.gene84327:intron 50.0%
GGAGGTGGTAACAAATCAGG+AGG - chr2.2:12156419-12156438 MS.gene84327:intron 50.0%
GGCAAGCTTGCCAATCTTGA+AGG - chr2.2:12160541-12160560 MS.gene84327:intron 50.0%
! CGTTGCTTCCTTTGGATTGG+TGG - chr2.2:12159280-12159299 MS.gene84327:intron 50.0%
!! ATGGATTGGAGTGGTGGTGT+TGG - chr2.2:12157929-12157948 MS.gene84327:intron 50.0%
AACAAGGGGTCCTCCAGCAA+TGG + chr2.2:12160491-12160510 None:intergenic 55.0%
ATCCAGACCTGCTGCTACAC+TGG - chr2.2:12156118-12156137 MS.gene84327:intron 55.0%
CACAAAACAGGGAGGCTGCA+AGG - chr2.2:12157614-12157633 MS.gene84327:intron 55.0%
CTGCTAGTGGCTCCAATTGC+TGG + chr2.2:12160366-12160385 None:intergenic 55.0%
GCAGAGGAAGCTCTCTCACA+AGG - chr2.2:12160433-12160452 MS.gene84327:intron 55.0%
TTCCAGTGTAGCAGCAGGTC+TGG + chr2.2:12156123-12156142 None:intergenic 55.0%
! CCTGAGAGCGTGCTCTTTGA+AGG + chr2.2:12157808-12157827 None:intergenic 55.0%
! CCTTCAAAGAGCACGCTCTC+AGG - chr2.2:12157805-12157824 MS.gene84327:intron 55.0%
! GATTGGAGTGGTGGTGTTGG+AGG - chr2.2:12157932-12157951 MS.gene84327:intron 55.0%
GCTGGAGGACCCCTTGTTGA+TGG - chr2.2:12160493-12160512 MS.gene84327:intron 60.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 12155454 12162082 12155454 ID=MS.gene84327
chr2.2 mRNA 12155454 12162082 12155454 ID=MS.gene84327.t1;Parent=MS.gene84327
chr2.2 exon 12161973 12162082 12161973 ID=MS.gene84327.t1.exon1;Parent=MS.gene84327.t1
chr2.2 CDS 12161973 12162082 12161973 ID=cds.MS.gene84327.t1;Parent=MS.gene84327.t1
chr2.2 exon 12161802 12161890 12161802 ID=MS.gene84327.t1.exon2;Parent=MS.gene84327.t1
chr2.2 CDS 12161802 12161890 12161802 ID=cds.MS.gene84327.t1;Parent=MS.gene84327.t1
chr2.2 exon 12161349 12161428 12161349 ID=MS.gene84327.t1.exon3;Parent=MS.gene84327.t1
chr2.2 CDS 12161349 12161428 12161349 ID=cds.MS.gene84327.t1;Parent=MS.gene84327.t1
chr2.2 exon 12160872 12161117 12160872 ID=MS.gene84327.t1.exon4;Parent=MS.gene84327.t1
chr2.2 CDS 12160872 12161117 12160872 ID=cds.MS.gene84327.t1;Parent=MS.gene84327.t1
chr2.2 exon 12160034 12160078 12160034 ID=MS.gene84327.t1.exon5;Parent=MS.gene84327.t1
chr2.2 CDS 12160034 12160078 12160034 ID=cds.MS.gene84327.t1;Parent=MS.gene84327.t1
chr2.2 exon 12159879 12159938 12159879 ID=MS.gene84327.t1.exon6;Parent=MS.gene84327.t1
chr2.2 CDS 12159879 12159938 12159879 ID=cds.MS.gene84327.t1;Parent=MS.gene84327.t1
chr2.2 exon 12159710 12159787 12159710 ID=MS.gene84327.t1.exon7;Parent=MS.gene84327.t1
chr2.2 CDS 12159710 12159787 12159710 ID=cds.MS.gene84327.t1;Parent=MS.gene84327.t1
chr2.2 exon 12159568 12159616 12159568 ID=MS.gene84327.t1.exon8;Parent=MS.gene84327.t1
chr2.2 CDS 12159568 12159616 12159568 ID=cds.MS.gene84327.t1;Parent=MS.gene84327.t1
chr2.2 exon 12158209 12158480 12158209 ID=MS.gene84327.t1.exon9;Parent=MS.gene84327.t1
chr2.2 CDS 12158209 12158480 12158209 ID=cds.MS.gene84327.t1;Parent=MS.gene84327.t1
chr2.2 exon 12156960 12157181 12156960 ID=MS.gene84327.t1.exon10;Parent=MS.gene84327.t1
chr2.2 CDS 12156960 12157181 12156960 ID=cds.MS.gene84327.t1;Parent=MS.gene84327.t1
chr2.2 exon 12155852 12155994 12155852 ID=MS.gene84327.t1.exon11;Parent=MS.gene84327.t1
chr2.2 CDS 12155852 12155994 12155852 ID=cds.MS.gene84327.t1;Parent=MS.gene84327.t1
chr2.2 exon 12155454 12155541 12155454 ID=MS.gene84327.t1.exon12;Parent=MS.gene84327.t1
chr2.2 CDS 12155454 12155541 12155454 ID=cds.MS.gene84327.t1;Parent=MS.gene84327.t1
Gene Sequence

>MS.gene84327

ATGGCGAGCCAAAGAATAGGAGAACTTGATTTTTCTGAGACAGGACATTCAACTAATCATGTCCCTTATGGAATTCATCATAGGATTAATAATCCTTCATCAAGCTTAATGTATTAATTCTTGAAGTACTGTTTTATTCATTTTGGTTTGTATAGTATTTAATTTAGTATAATGTTTTTGTTTGTTTGTTAGGAATGAAGAATCTGGTTTTGATTTTGGAGAGCTAGAAGAAGCAATTGTTTTGCAAGGAGTTAAGAATGGAAATGATGAAACAAAAGCATGTAAGTTTTGCTTTTTTCTATCAAATACCACTTTATTTTCTGACCTTAGATAAGCATAACCAACTCTTTCTAAAAGTAGAGGGAAAGAAAGAAAAAAAGCAAAGGTTTGAATATGTCTAAAGAGTGCATAGTTACCATTTCCAATACCATAATGATTCTGAGGCAATAGACATGGGAAGGTGTGGGGTTACAAACTTGGAAACCTCACTTCCCTTTTGCATGATTTTTACTGACTCCATAACTGCTGAAATATAAAGTTAATAGATTAGGTTCTTCTTTTCTTCGATACCTTTTACAATTATTTTGGTAAAAAATTTAAAGCCTTTTATTTTGGTTGATCCTCTCAGATTTTTTCTTTGATGATTCTTTGCAGCTTTTTTCACATCCAGACCTGCTGCTACACTGGAAATGTTCCCTTCTTGGCCAATGAGATTCCATCAAACCTCAACAGTAGTAATACTCTCTATCTTTGACCAATCTATTTTAATTATGCTTATCATAGATGCTTCTTATACATTGTTCAATTCAATTTCAAATAGAATGCATGTTTTTTTTGTCATATTGTCACTTCATTCATATGTTTGTTCAGCCCTTGTCGTATCGATTCGTTTAAAATAATGCATGCAACGATATGAGCCGATTAAATTATTTGACTATACTAATGATCTGAATTTGGAAATACAGGGAGGTGGTAACAAATCAGGAGGTGAAAGCAGTGATTCAGCACTATCAAGCAAAAATGAGAACCCTTTTGAGCAAGAATCACCCTTAAGTAAAAAAGCATCTTCTTTTTCATCAGATCATAATAATATGGATCAGCAGAATCTTCAGCTACAACAACAGAAGATAATAATATCAAATGATGCTTCTGCTGCTATAAGAACAGCCTCTTCATCACAGAATCAAATATCAGCAGCAGCCAAAGAAAAGGTTAATAGTAAAAAAAAAAATATTCACTTATACAGTTAAAGTGTTAAATCACTTAGTTATCTCTTTCCATATCCCATAAACTAAGGGAAAGTTTGGTCTTTCTTTATTTATTTACTGTTTTGAATTTGTACTATCTTCTTGGTCACGTAAAAACAGCACAGATCCCAACAGATTTCAGAAAATCAAAACAACAGAGAGTTTTCCTGATTCCTGAACGATTTTCTGACATGAAAACATGATAGAGAGAGAGAGAGAGAGAGAGAGAGTGAAGGATAGGATACTACTATTATGTTGTACTAACAAAAAAACAAAGTGAGAATCTTTTGAGTACTTATCAAAGTTTTTTTCACATTAAAAACTGACTCACTCTCACACACACTCTTCACTTGATATAGTGAAAACTTGTGTTTCTCTAACACAAGTTTAAAGAAACAGTTCACAAAAAATGGCTGAAAACGATCCATTTTGCTACCCTTATCACATTGAAGATGATTGCATTCCTACTGAGAAATGGTCAAATGGACTTCAACATTCTCAAAATTCAGTGAGCACACTCTAATATTATCATGCCATCTTTTTGTTCTTGGTTGAATTAAAAGTGTAGCATCTTTTTGATATAGCTCAAAAAAATTATCAAGTTATATGCTTAACAAATTTTCTTTTTTTTCCCTCACTCATTTGTTTAACCATTTTTATGTGCACATTTTTGTTCTACACTTGAAATTTGTGTATATCTTTCTGTTTTGCTTTTAATTAAATAAAACTTATATATGGATAATTTTTTTTGTTGTAGAAAAAAGGAGCTGGTTCAACATCAGATAAGCCACTTGATGCAAAGGTGTTTATATTTTTAAGTACAAATGTTCATTTTTATGTCTTTTTTTTGTTATGTTGATGTTTTATATGCTAAGGTAAAATTTGTACTTGTTTTAGACATTGAGACGTTTAGCACAAAACAGGGAGGCTGCAAGGAAAAGTCGTCTAAGGAAAAAGGTTTGTGTGTCCTATACATATAGATATAGATACATAAAGTTGTAAAAAATGAAAATATGAAACTTACTCATTGAATTGAATTTTTCTATAGGCTTATGTGCAGCAACTTGAGTCAAGTAGATTAAAGCTTACACAATTGGAACAAGACCTTCAAAGAGCACGCTCTCAGGTACTAAAGTCAAATATTATTGTATAATATATAGTTTATTTTTATTATTATTTTTACTTTTACTAATTAAGATTTTAACTGTTAATTTAAAAGGGTATGTTCATGGATTGGAGTGGTGGTGTTGGAGGCAATATAAGCTCTGGTGAGTTTATTTTTCATTTTTTTGTGATCATTTTTGAAACTAATTAAGTTTATTTTCTTATTTGTCACATTCAGAAACTTACCATCATTTACTAGTAATTTATTATTTTTGGAAGTATATGTAACTTTTTTAAAAATGACAAGTAAAAGTCAAAACTTGATCTTATGGGTGCACATTTCAAAACGTAGAGAAGTCTCTGAATCTGACCGAAATCTATGAATAAATAACTCGTGTGTTTGAATTATAAAAATATACAATAGGCCAATGTTTATGTTCAAAAGTATGACCTTTTTTAAAATATATAAACTCTAATATTCAAAACTATGTCCTTTTCTATCGTGTATAAACTATATATTAAAGCTGCTTTCAAGGGTGCCACTTGAATATTTCTTTTGCAGCTTGGATTAATTTGGCTCTCTATCTTTAGGGGCACTATAATAATACGATGAAGATTACATTTTTAATTATTAGCTAGATATACATCTTTTGCTTTGAAATAATATGTTTTCAACTAATCTTGCTTTCATTTTTTTATCAGAAATGAGTTTTTAAAGATCATTGTTTCAAATTATTTTTTGGTTTACTAAAAGAAAATATAAGTTGTCAAACAAAAAAACAAAAGATATAAAAAGATCATATTTAAATAGCAAACAAAACATCATTTTCTTAATTTGAAAAGAGCACCTAAAATCTCATAGAGGGCATAGTCTCCTTTATATATACTTTGGCTTTTCTTAGAATAATCATTCCATTATGATACTGCTCATTTCCACTTTTTTTTAGTAATAAATAAAAATACAACTTTTGAAAGAAAAAAAAGTTGTAAATAAATAAATAATCATGAATTATCATGCACAAAAAATGCACTTTAAGAAAAGGAAACGCATTACGTAGTATGATTAATCCACTTTGTTTAATCACAAGAAATTAAATTTGGTTCATTCCTTGCCACATTATTGCACTACTTAGTCACCAAAACAACCGACATAATATCAAAATGTAAACTACTACATTTTAATTTTAATTAAATATGAAACCAAAATCTTCACAATTAATATGATATATTTATTGTAATAATAAATTGTAGGAGGTGCAATGTTTGACATGGAATATGGAAGATGGTTAGAAGAAGACAACCGTTTATTAACGGAGTTAAGAAACGGATTGCAAGCGGCGTTAACAGATAATGAAATGAGAGTAATGGTGGATGGATATTTGTGTCATTATGATCAAATATTTAGACTCAAAGGTGTCACTGCTAAATCAGACGTGTTTCATCTTATCAATGGCATGTGGACTTCTCAAGCTGAACGTTGCTTCCTTTGGATTGGTGGTTTTAGACCCTCTGAAATTATCATGGTTAGTACAGTACAATACTTTTCATTCCATATAATTAATTTGTAATTAATTTGGTATAATCATAAGAGTATGTAATGTGAAACTTCTTAATAAAGGAATTATATTATGGGTTTGTTTGTTTCATATTATTAAAAAAATTGTTTTGATGTTCAATCTTTAGAGAATAATATTTAGAGATTTTGTAAAAAAGTCAAAGATGTTTGTTTATTAAAATGAAAATCATTTTTTTAGATAATCACTTGTAGAAAATAATTTTAAAGATAAGTTATTAAACCAACTTCTCATTTGAAATAGTTTTAGACTATTTTCATTTGCTCATTTTTTTTAACAACTTGTAACAAAGGATGGACATTTCTAAAAATTATTATTTACTATATACATATACATACATACATATATATGTGTGTTTTACAAAATAAATTGTAACAAACGGGCTTTATATACATTTTATTCATATATAGACATTTCTAATAAAAAAATCATATAAATGTGTTCATTATATACTTACATATCATTTCTTATATATAGAGTGCTAGAAACACTATTTTTTAACCCCTTTATAATACACACTCTTTTATTTAATGAATGAAATCAATGTCGGTTTCACATAAGTCATGAGATTCACACTGATTTCACTCGTAATAAAAAAGTGAGTGTCATATTGGGGTGTATAAGATGGTTTTTCTAACACTTATTTATCTAATAATTTAAGATGAAATTTATACTTAAAATAATGTAATTTTTTAAAAAAAATAGCTTGTGAGTTTTTTTTTTTTTTTTTGGTGAAGAAAGAGCTTGTGGTTACGTTTAGACATAAATAGGACTGAAAAATTCATTTAACTTAAATAAATAAGTAGCGTTCCACAACGTCACTTTCTCATAAGTTGTCATATGTCAGTTGTGTGGCAGTACGAACTTCTGTTCCAATGTAACAGTAAATTATTGCATGTACAGACAGTAATAGTACACACTAATTTGCATTAAGGTTAATATTAATATGCTAATGTTGATAATTTGGTGATCTCAGATGTTGATCCAGCAATTGGAGCCACTAGCAGAGCAGCAGATAATGGGGATGTATGGACTGAGGCATTCTTCACAGCAAGCAGAGGAAGCTCTCTCACAAGGACTTGACCAGTTGCAACAGTCTCTTGTTGACACCATTGCTGGAGGACCCCTTGTTGATGGTGTTCAACAAATGGTTGTTGCCATAGGCAAGCTTGCCAATCTTGAAGGTTTTCTTCGTCAGGTACATAATAGAATTTAAATCGTATACATTGTTATTGACGATTTTATTGGAGTTTTTTATCTTATTTATTCGTAACATTTGTTATTTGTCAATTTTTTTCCACATATAGTTTGAATATTGCTTTCTTTTTTGCAATTTGAATCAAGGAAAAATATTGTTTTTTATCCCATTATTTCCTTGTGATCTATGTGGCTGCATGCATATATTAAACCACAAATGTACGTTGTTATATCCTACCTAACATTTTATTATCTGGTACTAAAATACTAAATTAACCCGATCTTGATTGAATTTAAGGGTGTCTAACTTTCTTTTACTTTGTCTTGCATCATTAATTCTTATTGACATTTGCTTTTGACTTGTTTATTTATTTATGACGACTTTTTTGCATTTGTATATATAATAGTAATAGTAACTAGATATGTTGATCTTAATTAAATTACCTCCACTACTTTGGTTGTCACGTCAATCTTTCCAATTATGTTGCTAACTCATAGTGCTTTAGTTTAATATATGAATTTGCTTTGCTACAAATGTTCCATCATGTTGCTCAAAAGTTAGGTCATAAGGTTGATGTAATATTTCCATCTTAAAATGTTTCATTCAAAAGTTGGTTTTAGAAAGTGATGGTTATCTTGCTTAGTTTAAAATTAAAGACATTTTCTTGAATGTTTTCTAGTTAATTAAGTAGTTAACTCATTTCTTGAGGTAAATGATACTGAAAGAGCTTTGTCTTTTAGGAATCAACCCTAAAAACTAACATAATCACTAACTTATTATTAACATTTACTAATAAAGCAGTAGCTAGTATAGGAATTTTACATGTCAGTGATTAGTTAAATTTTTAAGAAGTTGCTCATAAAATTATTTTATATTTTAGTTTCAACTATTTTCCCTTATTGGCTTATTGCTTATCTATATATGAACTATGAAGTCTCATATTCATTCATATTTTTCAATTGAAGGCTGATAACTTGAGGCAACAAACTCTTCACCAATTATGTCGATTACTCACACTTCGTCAAGCGGCACGCTCTTTTCTTGTTATTGGAGAATACTATGGACGACTTAGAGCTCTTAGTTCTCTTTGGGCATCAAGACCACGAGAGTAAGTTAAATATATTCTAAATTATATATTTACATTTAGTTGGTAATTAATTTCATGCATGTTTGTAGGTTGAAATACATTTTAATTATGGTCTTTGATTTAATTTTACTAAGATAGATAGTACTTTTAATTTCATTAAATTATGTTTAAATGATATTTTTCATGTGCCAAATGGTGTTATAATTTTGCTTATAAAAAAATTATGCTCAATTTTTCATCAACTAACCATTTTTCTTTATCTTTAATTAGAAATTTATTTATTTTTTGAGTAATTTATGTATGACCAATTTATTTTGTTATATTCAAACAGGAACATGATCAGTGATGATAACTCATGCCAAACAACCACGGATATGCAAATGGTTCAACCTTCTCAGAATCATTTCACAAATTTCTGA

Protein sequence

>MS.gene84327.t1

MASQRIGELDFSETGHSTNHVPYGIHHRINNPSSSLMNEESGFDFGELEEAIVLQGVKNGNDETKASFFTSRPAATLEMFPSWPMRFHQTSTVGGGNKSGGESSDSALSSKNENPFEQESPLSKKASSFSSDHNNMDQQNLQLQQQKIIISNDASAAIRTASSSQNQISAAAKEKKKGAGSTSDKPLDAKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQDLQRARSQGMFMDWSGGVGGNISSGGAMFDMEYGRWLEEDNRLLTELRNGLQAALTDNEMRVMVDGYLCHYDQIFRLKGVTAKSDVFHLINGMWTSQAERCFLWIGGFRPSEIIMMLIQQLEPLAEQQIMGMYGLRHSSQQAEEALSQGLDQLQQSLVDTIAGGPLVDGVQQMVVAIGKLANLEGFLRQADNLRQQTLHQLCRLLTLRQAARSFLVIGEYYGRLRALSSLWASRPRENMISDDNSCQTTTDMQMVQPSQNHFTNF