Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85606.t1 | XP_003597511.2 | 83.3 | 870 | 61 | 6 | 1 | 786 | 697 | 1566 | 0.00E+00 | 1383.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85606.t1 | A0A072VBT1 | 83.3 | 870 | 61 | 6 | 1 | 786 | 430 | 1299 | 0.0e+00 | 1383.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene85606 | 0.856362 | 3.39E-62 | -1.69E-46 |
| MS.gene049501 | MS.gene85606 | 0.825662 | 4.15E-54 | -1.69E-46 |
| MS.gene049850 | MS.gene85606 | 0.833335 | 5.66E-56 | -1.69E-46 |
| MS.gene049979 | MS.gene85606 | 0.812081 | 5.07E-51 | -1.69E-46 |
| MS.gene050020 | MS.gene85606 | 0.838214 | 3.28E-57 | -1.69E-46 |
| MS.gene050438 | MS.gene85606 | 0.837346 | 5.49E-57 | -1.69E-46 |
| MS.gene050442 | MS.gene85606 | 0.806381 | 8.45E-50 | -1.69E-46 |
| MS.gene05045 | MS.gene85606 | 0.801373 | 9.29E-49 | -1.69E-46 |
| MS.gene050721 | MS.gene85606 | 0.802424 | 5.65E-49 | -1.69E-46 |
| MS.gene050724 | MS.gene85606 | 0.806215 | 9.17E-50 | -1.69E-46 |
| MS.gene050815 | MS.gene85606 | 0.837789 | 4.22E-57 | -1.69E-46 |
| MS.gene050844 | MS.gene85606 | 0.812082 | 5.07E-51 | -1.69E-46 |
| MS.gene051247 | MS.gene85606 | 0.819213 | 1.31E-52 | -1.69E-46 |
| MS.gene051265 | MS.gene85606 | 0.827407 | 1.59E-54 | -1.69E-46 |
| MS.gene051328 | MS.gene85606 | 0.823028 | 1.73E-53 | -1.69E-46 |
| MS.gene051388 | MS.gene85606 | 0.800317 | 1.53E-48 | -1.69E-46 |
| MS.gene05157 | MS.gene85606 | 0.800544 | 1.37E-48 | -1.69E-46 |
| MS.gene051719 | MS.gene85606 | 0.821 | 5.09E-53 | -1.69E-46 |
| MS.gene051720 | MS.gene85606 | 0.8116 | 6.46E-51 | -1.69E-46 |
| MS.gene052012 | MS.gene85606 | 0.819011 | 1.45E-52 | -1.69E-46 |
| MS.gene052020 | MS.gene85606 | 0.896661 | 2.98E-76 | -1.69E-46 |
| MS.gene05215 | MS.gene85606 | 0.802956 | 4.39E-49 | -1.69E-46 |
| MS.gene052516 | MS.gene85606 | 0.817383 | 3.39E-52 | -1.69E-46 |
| MS.gene052519 | MS.gene85606 | 0.824642 | 7.23E-54 | -1.69E-46 |
| MS.gene052611 | MS.gene85606 | 0.868078 | 8.53E-66 | -1.69E-46 |
| MS.gene052612 | MS.gene85606 | 0.828638 | 8.04E-55 | -1.69E-46 |
| MS.gene052613 | MS.gene85606 | 0.83246 | 9.34E-56 | -1.69E-46 |
| MS.gene052863 | MS.gene85606 | 0.866317 | 3.11E-65 | -1.69E-46 |
| MS.gene052896 | MS.gene85606 | 0.862301 | 5.58E-64 | -1.69E-46 |
| MS.gene053008 | MS.gene85606 | 0.843726 | 1.17E-58 | -1.69E-46 |
| MS.gene053074 | MS.gene85606 | 0.801129 | 1.04E-48 | -1.69E-46 |
| MS.gene053221 | MS.gene85606 | 0.809295 | 2.03E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene85606 | 0.828928 | 6.84E-55 | -1.69E-46 |
| MS.gene053967 | MS.gene85606 | 0.806387 | 8.43E-50 | -1.69E-46 |
| MS.gene054236 | MS.gene85606 | 0.803731 | 3.03E-49 | -1.69E-46 |
| MS.gene054467 | MS.gene85606 | 0.81781 | 2.72E-52 | -1.69E-46 |
| MS.gene054651 | MS.gene85606 | 0.801318 | 9.53E-49 | -1.69E-46 |
| MS.gene05468 | MS.gene85606 | 0.802349 | 5.85E-49 | -1.69E-46 |
| MS.gene054775 | MS.gene85606 | 0.807571 | 4.74E-50 | -1.69E-46 |
| MS.gene055356 | MS.gene85606 | 0.807571 | 4.74E-50 | -1.69E-46 |
| MS.gene055357 | MS.gene85606 | 0.83339 | 5.48E-56 | -1.69E-46 |
| MS.gene055358 | MS.gene85606 | 0.807341 | 5.30E-50 | -1.69E-46 |
| MS.gene055466 | MS.gene85606 | 0.827896 | 1.21E-54 | -1.69E-46 |
| MS.gene055512 | MS.gene85606 | 0.809041 | 2.30E-50 | -1.69E-46 |
| MS.gene055818 | MS.gene85606 | 0.84052 | 8.27E-58 | -1.69E-46 |
| MS.gene056173 | MS.gene85606 | 0.800937 | 1.14E-48 | -1.69E-46 |
| MS.gene056542 | MS.gene85606 | 0.817125 | 3.88E-52 | -1.69E-46 |
| MS.gene056543 | MS.gene85606 | 0.824186 | 9.25E-54 | -1.69E-46 |
| MS.gene056545 | MS.gene85606 | 0.821932 | 3.10E-53 | -1.69E-46 |
| MS.gene056553 | MS.gene85606 | 0.839044 | 2.01E-57 | -1.69E-46 |
| MS.gene057060 | MS.gene85606 | 0.806029 | 1.00E-49 | -1.69E-46 |
| MS.gene057444 | MS.gene85606 | 0.806901 | 6.57E-50 | -1.69E-46 |
| MS.gene057693 | MS.gene85606 | 0.813036 | 3.14E-51 | -1.69E-46 |
| MS.gene057915 | MS.gene85606 | 0.820498 | 6.65E-53 | -1.69E-46 |
| MS.gene058168 | MS.gene85606 | 0.819729 | 9.97E-53 | -1.69E-46 |
| MS.gene058625 | MS.gene85606 | 0.806656 | 7.40E-50 | -1.69E-46 |
| MS.gene058636 | MS.gene85606 | 0.807224 | 5.61E-50 | -1.69E-46 |
| MS.gene058829 | MS.gene85606 | 0.80748 | 4.95E-50 | -1.69E-46 |
| MS.gene059842 | MS.gene85606 | 0.820049 | 8.42E-53 | -1.69E-46 |
| MS.gene059937 | MS.gene85606 | 0.834185 | 3.47E-56 | -1.69E-46 |
| MS.gene060137 | MS.gene85606 | -0.807874 | 4.08E-50 | -1.69E-46 |
| MS.gene060322 | MS.gene85606 | 0.833601 | 4.86E-56 | -1.69E-46 |
| MS.gene060470 | MS.gene85606 | 0.800911 | 1.15E-48 | -1.69E-46 |
| MS.gene060587 | MS.gene85606 | 0.820505 | 6.62E-53 | -1.69E-46 |
| MS.gene060803 | MS.gene85606 | 0.841893 | 3.60E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85606.t1 | MTR_2g098830 | 83.333 | 870 | 61 | 6 | 1 | 786 | 697 | 1566 | 0.0 | 1449 |
| MS.gene85606.t1 | MTR_2g098830 | 52.008 | 523 | 130 | 10 | 203 | 620 | 1 | 507 | 5.26e-145 | 464 |
| MS.gene85606.t1 | MTR_2g098830 | 67.200 | 125 | 28 | 2 | 1 | 113 | 634 | 757 | 3.50e-40 | 160 |
| MS.gene85606.t1 | MTR_2g098830 | 66.400 | 125 | 29 | 2 | 1 | 113 | 571 | 694 | 4.32e-39 | 157 |
| MS.gene85606.t1 | MTR_2g098830 | 65.600 | 125 | 30 | 2 | 1 | 113 | 382 | 505 | 8.29e-38 | 153 |
| MS.gene85606.t1 | MTR_2g098830 | 65.600 | 125 | 30 | 2 | 1 | 113 | 508 | 631 | 5.61e-37 | 150 |
| MS.gene85606.t1 | MTR_2g098830 | 71.429 | 56 | 16 | 0 | 485 | 540 | 497 | 552 | 5.72e-15 | 80.1 |
| MS.gene85606.t1 | MTR_2g098830 | 65.517 | 58 | 20 | 0 | 483 | 540 | 684 | 741 | 7.00e-14 | 76.6 |
| MS.gene85606.t1 | MTR_2g098830 | 65.517 | 58 | 20 | 0 | 483 | 540 | 621 | 678 | 8.37e-14 | 76.3 |
| MS.gene85606.t1 | MTR_2g098830 | 83.333 | 870 | 61 | 6 | 1 | 786 | 430 | 1299 | 0.0 | 1447 |
| MS.gene85606.t1 | MTR_2g098830 | 67.742 | 124 | 27 | 2 | 1 | 112 | 367 | 489 | 4.95e-40 | 160 |
| MS.gene85606.t1 | MTR_2g098830 | 66.935 | 124 | 28 | 2 | 1 | 112 | 304 | 426 | 6.17e-39 | 156 |
| MS.gene85606.t1 | MTR_2g098830 | 54.605 | 152 | 33 | 1 | 425 | 540 | 8 | 159 | 1.44e-38 | 155 |
| MS.gene85606.t1 | MTR_2g098830 | 66.129 | 124 | 29 | 2 | 1 | 112 | 115 | 237 | 1.18e-37 | 152 |
| MS.gene85606.t1 | MTR_2g098830 | 66.129 | 124 | 29 | 2 | 1 | 112 | 241 | 363 | 8.11e-37 | 150 |
| MS.gene85606.t1 | MTR_2g098830 | 71.429 | 56 | 16 | 0 | 485 | 540 | 230 | 285 | 6.15e-15 | 79.7 |
| MS.gene85606.t1 | MTR_2g098830 | 59.375 | 64 | 26 | 0 | 477 | 540 | 411 | 474 | 7.74e-14 | 76.3 |
| MS.gene85606.t1 | MTR_2g098830 | 59.375 | 64 | 26 | 0 | 477 | 540 | 348 | 411 | 9.34e-14 | 75.9 |
| MS.gene85606.t1 | MTR_4g067090 | 49.924 | 661 | 236 | 13 | 203 | 787 | 2 | 643 | 0.0 | 577 |
| MS.gene85606.t1 | MTR_4g067090 | 37.681 | 138 | 75 | 3 | 69 | 203 | 360 | 489 | 1.27e-14 | 78.2 |
| MS.gene85606.t1 | MTR_2g098720 | 57.808 | 365 | 107 | 3 | 203 | 521 | 1 | 364 | 8.34e-131 | 395 |
| MS.gene85606.t1 | MTR_2g098710 | 55.342 | 365 | 107 | 6 | 209 | 521 | 6 | 366 | 1.19e-121 | 373 |
| MS.gene85606.t1 | MTR_0002s1280 | 56.013 | 316 | 91 | 4 | 203 | 489 | 1 | 297 | 1.68e-106 | 330 |
| MS.gene85606.t1 | MTR_2g098730 | 53.067 | 326 | 105 | 4 | 203 | 481 | 1 | 325 | 7.65e-104 | 326 |
| MS.gene85606.t1 | MTR_2g098770 | 47.170 | 318 | 83 | 5 | 203 | 491 | 1 | 262 | 3.84e-76 | 252 |
| MS.gene85606.t1 | MTR_8g463810 | 76.471 | 51 | 12 | 0 | 510 | 560 | 31 | 81 | 8.10e-19 | 90.1 |
| MS.gene85606.t1 | MTR_8g463810 | 42.735 | 117 | 61 | 2 | 66 | 177 | 31 | 146 | 9.37e-15 | 77.8 |
| MS.gene85606.t1 | MTR_2g098740 | 58.065 | 62 | 26 | 0 | 206 | 267 | 23 | 84 | 5.13e-14 | 69.3 |
| MS.gene85606.t1 | MTR_2g098780 | 53.846 | 65 | 30 | 0 | 203 | 267 | 1 | 65 | 2.16e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85606.t1 | AT1G05950 | 35.000 | 600 | 312 | 17 | 206 | 752 | 14 | 588 | 1.15e-89 | 295 |
| MS.gene85606.t1 | AT1G05950 | 34.539 | 608 | 320 | 17 | 206 | 760 | 14 | 596 | 4.05e-86 | 286 |
| MS.gene85606.t1 | AT1G05950 | 33.862 | 567 | 297 | 17 | 206 | 719 | 14 | 555 | 1.63e-74 | 253 |
| MS.gene85606.t1 | AT1G05950 | 33.862 | 567 | 297 | 17 | 206 | 719 | 14 | 555 | 1.63e-74 | 253 |
| MS.gene85606.t1 | AT1G05950 | 34.211 | 532 | 275 | 16 | 206 | 684 | 14 | 523 | 1.31e-73 | 250 |
Find 128 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTAGAATTTGTGGCATTTA+AGG | 0.143029 | 2.4:-5297928 | MS.gene85606:CDS |
| CAAGCTACTGTAAGAGTTAA+AGG | 0.144942 | 2.4:-5293235 | MS.gene85606:CDS |
| CCTTCTTACTGTCGACTAAA+AGG | 0.232115 | 2.4:+5297693 | None:intergenic |
| GAATATGTCATGAAAATAAT+TGG | 0.240093 | 2.4:-5293433 | MS.gene85606:CDS |
| TGTTGGAACTATTTGCATTC+AGG | 0.252524 | 2.4:+5294926 | None:intergenic |
| ACTTTCTGCTGTTGAGATAT+TGG | 0.266453 | 2.4:+5299045 | None:intergenic |
| TAATCTCAGACTGGATTTCT+AGG | 0.277824 | 2.4:-5296057 | MS.gene85606:intron |
| TCTGAGATTATTTCGGAATA+AGG | 0.286569 | 2.4:+5296070 | None:intergenic |
| CTTTCAATTAAATCTTTGAT+AGG | 0.306694 | 2.4:+5296964 | None:intergenic |
| TATTCTTCTTTGAGTTTAGA+TGG | 0.308246 | 2.4:+5299689 | None:intergenic |
| GATTCTGTCACTTCATGCTT+TGG | 0.327638 | 2.4:+5295788 | None:intergenic |
| ATTCTGTCACTTCATGCTTT+GGG | 0.332520 | 2.4:+5295789 | None:intergenic |
| ATGGGCCATCCCTCTATATC+TGG | 0.332584 | 2.4:+5297731 | None:intergenic |
| CCTTTGAAGCTATGAAAGTT+TGG | 0.334794 | 2.4:+5294887 | None:intergenic |
| TGTTGAAATTATCTGCAATC+AGG | 0.361667 | 2.4:+5299217 | None:intergenic |
| ACCGTTACAGCCTTCTATAA+TGG | 0.369036 | 2.4:+5294020 | None:intergenic |
| ACAGCAGAAAGTTGCAAAAC+AGG | 0.369097 | 2.4:-5299034 | MS.gene85606:intron |
| TTCATTAACTTGTAAAGTAT+TGG | 0.372964 | 2.4:+5299652 | None:intergenic |
| AATCCAGTCTGAGATTATTT+CGG | 0.378818 | 2.4:+5296063 | None:intergenic |
| GCTACTTTAGTATCACTTCC+TGG | 0.382812 | 2.4:+5295722 | None:intergenic |
| AAGTATTGGCAATATGCTTC+TGG | 0.385074 | 2.4:+5299666 | None:intergenic |
| GCATAGTGCCAATACTTTAC+AGG | 0.385936 | 2.4:-5295576 | MS.gene85606:intron |
| TTGATCTTGCAGGAACTAGA+TGG | 0.390794 | 2.4:-5293455 | MS.gene85606:intron |
| GTCCTACTGTGGATGCAGTT+AGG | 0.395558 | 2.4:-5299131 | MS.gene85606:CDS |
| GCATCCAGAGCTAGAATTTG+TGG | 0.406085 | 2.4:-5297937 | MS.gene85606:CDS |
| TGTCAAGGAAGACTGGGATA+TGG | 0.407345 | 2.4:-5295648 | MS.gene85606:CDS |
| AAGTTAGAATCCATTATAGA+AGG | 0.407710 | 2.4:-5294030 | MS.gene85606:CDS |
| CAAGTTTCTGAAGATACAAA+TGG | 0.414948 | 2.4:-5297593 | MS.gene85606:CDS |
| AGCACAAGAGCCAAAATTAG+AGG | 0.415770 | 2.4:+5293099 | None:intergenic |
| GAAGCCTTTGCTGGCAGCAT+TGG | 0.419671 | 2.4:+5299084 | None:intergenic |
| GTTGGAACTATTTGCATTCA+GGG | 0.426572 | 2.4:+5294927 | None:intergenic |
| TCCTACTGTGGATGCAGTTA+GGG | 0.428934 | 2.4:-5299130 | MS.gene85606:CDS |
| GTTCCACCACTGATGGGGTA+TGG | 0.442038 | 2.4:-5297649 | MS.gene85606:CDS |
| CACTTTGCAAAGTCCGTGCC+AGG | 0.445701 | 2.4:-5293902 | MS.gene85606:intron |
| TTCACTTACCTGTAAAGTAT+TGG | 0.447276 | 2.4:+5295568 | None:intergenic |
| GTGATTCTGTCAAGGAAGAC+TGG | 0.454947 | 2.4:-5295655 | MS.gene85606:CDS |
| CATAGCTTCGAAGAGGAAGA+TGG | 0.455683 | 2.4:-5299169 | MS.gene85606:CDS |
| GATCTTCTCAAGATTTGTGT+TGG | 0.457122 | 2.4:+5294909 | None:intergenic |
| TGTCAAGGAAGACCAGGATA+TGG | 0.457685 | 2.4:-5299735 | MS.gene85606:CDS |
| AATGCCACAAATTCTAGCTC+TGG | 0.460242 | 2.4:+5297933 | None:intergenic |
| AGAATCACGTGTAAGTAGTA+AGG | 0.460672 | 2.4:-5295771 | MS.gene85606:CDS |
| TCACGGCTAGAAGCCTTTGC+TGG | 0.462181 | 2.4:+5299075 | None:intergenic |
| TAGGGCATTCGTTGAACACT+TGG | 0.464155 | 2.4:-5299112 | MS.gene85606:CDS |
| GGTCAAGAAAGACCATGATA+TGG | 0.470543 | 2.4:-5299888 | MS.gene85606:CDS |
| TACAATCATGCAGTGTGGTT+CGG | 0.473677 | 2.4:-5299909 | MS.gene85606:CDS |
| CCAAACTTTCATAGCTTCAA+AGG | 0.484234 | 2.4:-5294887 | MS.gene85606:CDS |
| CAAACTTTCATAGCTTCAAA+GGG | 0.487763 | 2.4:-5294886 | MS.gene85606:CDS |
| AGTTGGTTATTCTGCTGTAA+AGG | 0.487889 | 2.4:-5297489 | MS.gene85606:CDS |
| ATGGTTGTGGTATAACTATA+CGG | 0.491124 | 2.4:-5295679 | MS.gene85606:CDS |
| TGCTCACAGTCGACAGCTGA+TGG | 0.492405 | 2.4:-5297000 | MS.gene85606:CDS |
| TCTTCAGCAGCGCGCGATAG+AGG | 0.496928 | 2.4:-5294634 | MS.gene85606:CDS |
| ATTGATCTTGATAACAAGCC+AGG | 0.497827 | 2.4:-5295740 | MS.gene85606:CDS |
| TCAATGCTCTTATACGAAAG+AGG | 0.506318 | 2.4:-5294840 | MS.gene85606:CDS |
| ATCTCTTGCTTCGCGAGGAA+AGG | 0.507021 | 2.4:+5293174 | None:intergenic |
| GGTACATGGTTAAGAAATCA+AGG | 0.515023 | 2.4:-5294000 | MS.gene85606:CDS |
| TGCAGCTCTTAATCAGAAAG+AGG | 0.516884 | 2.4:-5299945 | MS.gene85606:CDS |
| ATTGGATTGCCAGGCTGAGA+AGG | 0.517463 | 2.4:-5295058 | MS.gene85606:intron |
| TAGAAGGCTGTAACGGTACA+TGG | 0.518312 | 2.4:-5294014 | MS.gene85606:CDS |
| GATAGAGATACACTATAAGT+TGG | 0.520216 | 2.4:+5293404 | None:intergenic |
| GATAAACTTCAAACCTCGCT+AGG | 0.526955 | 2.4:+5299575 | None:intergenic |
| AGTTATCCACATCCATATCA+TGG | 0.533909 | 2.4:+5299876 | None:intergenic |
| TTCTGCTGTTGAGATATTGG+AGG | 0.535331 | 2.4:+5299048 | None:intergenic |
| AGTTGTCCACATCCATATCC+TGG | 0.536631 | 2.4:+5299723 | None:intergenic |
| ATTGGATTGGCAGGCTGAGA+AGG | 0.536680 | 2.4:-5299349 | MS.gene85606:intron |
| GAGATACACTATAAGTTGGT+AGG | 0.538498 | 2.4:+5293408 | None:intergenic |
| CTATCAAAGATTTAATTGAA+AGG | 0.539397 | 2.4:-5296963 | MS.gene85606:intron |
| GTTGACCAAATTTAGAAGTG+TGG | 0.541024 | 2.4:-5293134 | MS.gene85606:CDS |
| GACTTTGAGTATTCGTGCGA+GGG | 0.544336 | 2.4:-5293208 | MS.gene85606:CDS |
| TGATCCAATGCTGCCAGCAA+AGG | 0.549274 | 2.4:-5299088 | MS.gene85606:CDS |
| AAAATTCAGAGATGGTTAGC+TGG | 0.549868 | 2.4:-5294588 | MS.gene85606:intron |
| CAGAAAGAGAACAATGGTTG+TGG | 0.553769 | 2.4:-5295692 | MS.gene85606:CDS |
| GTTGAAATTATCTGCAATCA+GGG | 0.555509 | 2.4:+5299218 | None:intergenic |
| CAGAAAGAGGACAACGGTTG+CGG | 0.564386 | 2.4:-5299932 | MS.gene85606:CDS |
| GGAAGACTGGGATATGGATG+TGG | 0.567799 | 2.4:-5295642 | MS.gene85606:CDS |
| AAGTTTCTGAAGATACAAAT+GGG | 0.569815 | 2.4:-5297592 | MS.gene85606:CDS |
| GAAAGACCATGATATGGATG+TGG | 0.569888 | 2.4:-5299882 | MS.gene85606:CDS |
| GGAAGACCAGGATATGGATG+TGG | 0.572264 | 2.4:-5299729 | MS.gene85606:CDS |
| TAGTTTGCAAGATTCAAAGC+TGG | 0.573315 | 2.4:-5295825 | MS.gene85606:CDS |
| CTGAGAAGGTTGTTTCAACA+AGG | 0.573360 | 2.4:-5299335 | MS.gene85606:CDS |
| ATTCCGAAATAATCTCAGAC+TGG | 0.575612 | 2.4:-5296066 | MS.gene85606:CDS |
| GCTCACAGTCGACAGCTGAT+GGG | 0.576900 | 2.4:-5296999 | MS.gene85606:CDS |
| GCTCTTATACGAAAGAGGAA+TGG | 0.578484 | 2.4:-5294835 | MS.gene85606:CDS |
| AGTAGAGAGGTCATGTCTGT+TGG | 0.579930 | 2.4:-5299809 | MS.gene85606:CDS |
| GAATCACGTGTAAGTAGTAA+GGG | 0.585414 | 2.4:-5295770 | MS.gene85606:CDS |
| TGTATCTTCAGAAACTTGAT+CGG | 0.587578 | 2.4:+5297598 | None:intergenic |
| TCCATTATAGAAGGCTGTAA+CGG | 0.587717 | 2.4:-5294021 | MS.gene85606:CDS |
| CATGGTTAAGAAATCAAGGA+AGG | 0.596747 | 2.4:-5293996 | MS.gene85606:CDS |
| TATAGTGTATCTCTATCAGA+TGG | 0.596779 | 2.4:-5293398 | MS.gene85606:intron |
| TATACGAAAGAGGAATGGAC+TGG | 0.597795 | 2.4:-5294830 | MS.gene85606:intron |
| AGAAAGCACATCACTGAGGG+TGG | 0.598680 | 2.4:-5295024 | MS.gene85606:CDS |
| TACACAGTGTAGTTCTGTCA+AGG | 0.599872 | 2.4:-5299750 | MS.gene85606:CDS |
| TAGTTCTGTCAAGGAAGACC+AGG | 0.600042 | 2.4:-5299741 | MS.gene85606:CDS |
| TCTGCTGTAAAGGAAGCTAC+CGG | 0.601256 | 2.4:-5297479 | MS.gene85606:intron |
| ATCTGATGTGTGTCCTACTG+TGG | 0.606281 | 2.4:-5299142 | MS.gene85606:CDS |
| GCGCGCGATAGAGGATGAGA+TGG | 0.608807 | 2.4:-5294625 | MS.gene85606:CDS |
| AGGATGCACATTACTGAGGG+TGG | 0.608899 | 2.4:-5299315 | MS.gene85606:CDS |
| ATAGCTTCGAAGAGGAAGAT+GGG | 0.609022 | 2.4:-5299168 | MS.gene85606:CDS |
| ACAAAAGATAGAAAATTCAT+CGG | 0.609701 | 2.4:-5299627 | MS.gene85606:CDS |
| AACAAGGATGCACATTACTG+AGG | 0.610296 | 2.4:-5299319 | MS.gene85606:CDS |
| GTAATATGAAAATTCAGAGA+TGG | 0.610374 | 2.4:-5294596 | MS.gene85606:CDS |
| AGAACATGTCTTGCCTGGCA+CGG | 0.612050 | 2.4:+5293889 | None:intergenic |
| AAAAGAAAGCACATCACTGA+GGG | 0.612477 | 2.4:-5295027 | MS.gene85606:CDS |
| TGATTCTGTCAAGGAAGACT+GGG | 0.612643 | 2.4:-5295654 | MS.gene85606:CDS |
| GCACAAGAGCCAAAATTAGA+GGG | 0.616086 | 2.4:+5293100 | None:intergenic |
| ACAAGGATGCACATTACTGA+GGG | 0.616230 | 2.4:-5299318 | MS.gene85606:CDS |
| AAAGTTTCATAGCTTCGAAG+AGG | 0.617952 | 2.4:-5299176 | MS.gene85606:CDS |
| TGACCATACCCCATCAGTGG+TGG | 0.620761 | 2.4:+5297646 | None:intergenic |
| GGACTTTGAGTATTCGTGCG+AGG | 0.621197 | 2.4:-5293209 | MS.gene85606:CDS |
| GAGATATTGGAGGTGCATCA+CGG | 0.628198 | 2.4:+5299058 | None:intergenic |
| TAAGATTTGTGCTGATGCCA+CGG | 0.632079 | 2.4:-5299268 | MS.gene85606:CDS |
| TATACGGTGTGATTCTGTCA+AGG | 0.633610 | 2.4:-5295663 | MS.gene85606:CDS |
| TGAATGTACAAGACCTAGCG+AGG | 0.635184 | 2.4:-5299588 | MS.gene85606:intron |
| AACTTTCATAGCTTCAAAGG+GGG | 0.638402 | 2.4:-5294884 | MS.gene85606:CDS |
| GCTGAATCTCTTGCTTCGCG+AGG | 0.639784 | 2.4:+5293169 | None:intergenic |
| AGAATCACATGTAAGTAGAG+AGG | 0.640253 | 2.4:-5299822 | MS.gene85606:CDS |
| TAAGAGTAAAAGATTGACAG+AGG | 0.645315 | 2.4:-5293932 | MS.gene85606:CDS |
| TTTCGGAATAAGGAAGCACG+TGG | 0.656466 | 2.4:+5296080 | None:intergenic |
| CACTGACCATACCCCATCAG+TGG | 0.656521 | 2.4:+5297643 | None:intergenic |
| GCTGCAATAGTATCACTGCA+TGG | 0.660142 | 2.4:+5299962 | None:intergenic |
| ATGTTCCAGATATAGAGGGA+TGG | 0.660253 | 2.4:-5297736 | MS.gene85606:CDS |
| CTTAATCAGAAAGAGAACAA+TGG | 0.663283 | 2.4:-5295698 | MS.gene85606:CDS |
| GCCCTAACTGCATCCACAGT+AGG | 0.676357 | 2.4:+5299129 | None:intergenic |
| TACTGTAAGAGTTAAAGGAG+TGG | 0.676898 | 2.4:-5293230 | MS.gene85606:CDS |
| AAACTTTCATAGCTTCAAAG+GGG | 0.698297 | 2.4:-5294885 | MS.gene85606:CDS |
| TGCGGTACAATCATGCAGTG+TGG | 0.699609 | 2.4:-5299914 | MS.gene85606:CDS |
| CTTAATCAGAAAGAGGACAA+CGG | 0.738632 | 2.4:-5299938 | MS.gene85606:CDS |
| GTGGAAGTACTCGACAACTG+AGG | 0.740853 | 2.4:+5296099 | None:intergenic |
| CTTGATCAGAAAGAGAACAG+CGG | 0.754686 | 2.4:-5299785 | MS.gene85606:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 5293096 | 5300008 | 5293096 | ID=MS.gene85606 |
| chr2.4 | mRNA | 5293096 | 5300008 | 5293096 | ID=MS.gene85606.t1;Parent=MS.gene85606 |
| chr2.4 | exon | 5299589 | 5300008 | 5299589 | ID=MS.gene85606.t1.exon1;Parent=MS.gene85606.t1 |
| chr2.4 | CDS | 5299589 | 5300008 | 5299589 | ID=cds.MS.gene85606.t1;Parent=MS.gene85606.t1 |
| chr2.4 | exon | 5299035 | 5299358 | 5299035 | ID=MS.gene85606.t1.exon2;Parent=MS.gene85606.t1 |
| chr2.4 | CDS | 5299035 | 5299358 | 5299035 | ID=cds.MS.gene85606.t1;Parent=MS.gene85606.t1 |
| chr2.4 | exon | 5297911 | 5298003 | 5297911 | ID=MS.gene85606.t1.exon3;Parent=MS.gene85606.t1 |
| chr2.4 | CDS | 5297911 | 5298003 | 5297911 | ID=cds.MS.gene85606.t1;Parent=MS.gene85606.t1 |
| chr2.4 | exon | 5297480 | 5297831 | 5297480 | ID=MS.gene85606.t1.exon4;Parent=MS.gene85606.t1 |
| chr2.4 | CDS | 5297480 | 5297831 | 5297480 | ID=cds.MS.gene85606.t1;Parent=MS.gene85606.t1 |
| chr2.4 | exon | 5296964 | 5297054 | 5296964 | ID=MS.gene85606.t1.exon5;Parent=MS.gene85606.t1 |
| chr2.4 | CDS | 5296964 | 5297054 | 5296964 | ID=cds.MS.gene85606.t1;Parent=MS.gene85606.t1 |
| chr2.4 | exon | 5296058 | 5296168 | 5296058 | ID=MS.gene85606.t1.exon6;Parent=MS.gene85606.t1 |
| chr2.4 | CDS | 5296058 | 5296168 | 5296058 | ID=cds.MS.gene85606.t1;Parent=MS.gene85606.t1 |
| chr2.4 | exon | 5295577 | 5295862 | 5295577 | ID=MS.gene85606.t1.exon7;Parent=MS.gene85606.t1 |
| chr2.4 | CDS | 5295577 | 5295862 | 5295577 | ID=cds.MS.gene85606.t1;Parent=MS.gene85606.t1 |
| chr2.4 | exon | 5294831 | 5295067 | 5294831 | ID=MS.gene85606.t1.exon8;Parent=MS.gene85606.t1 |
| chr2.4 | CDS | 5294831 | 5295067 | 5294831 | ID=cds.MS.gene85606.t1;Parent=MS.gene85606.t1 |
| chr2.4 | exon | 5294589 | 5294658 | 5294589 | ID=MS.gene85606.t1.exon9;Parent=MS.gene85606.t1 |
| chr2.4 | CDS | 5294589 | 5294658 | 5294589 | ID=cds.MS.gene85606.t1;Parent=MS.gene85606.t1 |
| chr2.4 | exon | 5293903 | 5294075 | 5293903 | ID=MS.gene85606.t1.exon10;Parent=MS.gene85606.t1 |
| chr2.4 | CDS | 5293903 | 5294075 | 5293903 | ID=cds.MS.gene85606.t1;Parent=MS.gene85606.t1 |
| chr2.4 | exon | 5293399 | 5293465 | 5293399 | ID=MS.gene85606.t1.exon11;Parent=MS.gene85606.t1 |
| chr2.4 | CDS | 5293399 | 5293465 | 5293399 | ID=cds.MS.gene85606.t1;Parent=MS.gene85606.t1 |
| chr2.4 | exon | 5293096 | 5293265 | 5293096 | ID=MS.gene85606.t1.exon12;Parent=MS.gene85606.t1 |
| chr2.4 | CDS | 5293096 | 5293265 | 5293096 | ID=cds.MS.gene85606.t1;Parent=MS.gene85606.t1 |
| Gene Sequence |
| Protein sequence |
