Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88498.t1 | XP_003627843.1 | 94.3 | 192 | 11 | 0 | 1 | 192 | 1 | 192 | 1.50E-97 | 365.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88498.t1 | Q9LK88 | 74.3 | 187 | 48 | 0 | 5 | 191 | 10 | 196 | 4.1e-80 | 298.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88498.t1 | B7FMX0 | 94.3 | 192 | 11 | 0 | 1 | 192 | 1 | 192 | 1.1e-97 | 365.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049153 | MS.gene88498 | 0.803702 | 3.07E-49 | -1.69E-46 |
| MS.gene049757 | MS.gene88498 | 0.848176 | 7.24E-60 | -1.69E-46 |
| MS.gene050060 | MS.gene88498 | 0.865228 | 6.88E-65 | -1.69E-46 |
| MS.gene050133 | MS.gene88498 | -0.832778 | 7.79E-56 | -1.69E-46 |
| MS.gene050400 | MS.gene88498 | 0.800444 | 1.44E-48 | -1.69E-46 |
| MS.gene050406 | MS.gene88498 | 0.819138 | 1.36E-52 | -1.69E-46 |
| MS.gene050426 | MS.gene88498 | -0.864133 | 1.51E-64 | -1.69E-46 |
| MS.gene050464 | MS.gene88498 | 0.807376 | 5.21E-50 | -1.69E-46 |
| MS.gene050670 | MS.gene88498 | 0.82131 | 4.32E-53 | -1.69E-46 |
| MS.gene050971 | MS.gene88498 | 0.815264 | 1.01E-51 | -1.69E-46 |
| MS.gene051525 | MS.gene88498 | 0.810407 | 1.17E-50 | -1.69E-46 |
| MS.gene051983 | MS.gene88498 | 0.822776 | 1.98E-53 | -1.69E-46 |
| MS.gene052011 | MS.gene88498 | -0.834214 | 3.41E-56 | -1.69E-46 |
| MS.gene052077 | MS.gene88498 | 0.840715 | 7.36E-58 | -1.69E-46 |
| MS.gene052134 | MS.gene88498 | 0.830869 | 2.30E-55 | -1.69E-46 |
| MS.gene052135 | MS.gene88498 | 0.839858 | 1.23E-57 | -1.69E-46 |
| MS.gene052136 | MS.gene88498 | 0.817148 | 3.83E-52 | -1.69E-46 |
| MS.gene052188 | MS.gene88498 | 0.839363 | 1.66E-57 | -1.69E-46 |
| MS.gene052253 | MS.gene88498 | 0.830072 | 3.61E-55 | -1.69E-46 |
| MS.gene052340 | MS.gene88498 | 0.839594 | 1.44E-57 | -1.69E-46 |
| MS.gene052414 | MS.gene88498 | 0.807839 | 4.15E-50 | -1.69E-46 |
| MS.gene052469 | MS.gene88498 | 0.848959 | 4.39E-60 | -1.69E-46 |
| MS.gene052758 | MS.gene88498 | 0.838001 | 3.73E-57 | -1.69E-46 |
| MS.gene05316 | MS.gene88498 | 0.811401 | 7.13E-51 | -1.69E-46 |
| MS.gene053330 | MS.gene88498 | 0.815564 | 8.67E-52 | -1.69E-46 |
| MS.gene053494 | MS.gene88498 | 0.805385 | 1.37E-49 | -1.69E-46 |
| MS.gene054102 | MS.gene88498 | 0.817552 | 3.11E-52 | -1.69E-46 |
| MS.gene054183 | MS.gene88498 | 0.83914 | 1.89E-57 | -1.69E-46 |
| MS.gene054349 | MS.gene88498 | 0.866272 | 3.22E-65 | -1.69E-46 |
| MS.gene054556 | MS.gene88498 | 0.814891 | 1.22E-51 | -1.69E-46 |
| MS.gene055116 | MS.gene88498 | 0.81937 | 1.20E-52 | -1.69E-46 |
| MS.gene055369 | MS.gene88498 | 0.813049 | 3.12E-51 | -1.69E-46 |
| MS.gene055539 | MS.gene88498 | 0.830493 | 2.85E-55 | -1.69E-46 |
| MS.gene05553 | MS.gene88498 | 0.846556 | 2.02E-59 | -1.69E-46 |
| MS.gene05556 | MS.gene88498 | 0.814282 | 1.67E-51 | -1.69E-46 |
| MS.gene055601 | MS.gene88498 | -0.811598 | 6.46E-51 | -1.69E-46 |
| MS.gene055744 | MS.gene88498 | 0.807841 | 4.15E-50 | -1.69E-46 |
| MS.gene056233 | MS.gene88498 | 0.898798 | 3.73E-77 | -1.69E-46 |
| MS.gene056514 | MS.gene88498 | 0.807615 | 4.64E-50 | -1.69E-46 |
| MS.gene056659 | MS.gene88498 | 0.841195 | 5.51E-58 | -1.69E-46 |
| MS.gene056723 | MS.gene88498 | 0.814605 | 1.42E-51 | -1.69E-46 |
| MS.gene056899 | MS.gene88498 | -0.841895 | 3.60E-58 | -1.69E-46 |
| MS.gene056979 | MS.gene88498 | 0.816822 | 4.54E-52 | -1.69E-46 |
| MS.gene057124 | MS.gene88498 | 0.808739 | 2.67E-50 | -1.69E-46 |
| MS.gene057396 | MS.gene88498 | 0.881156 | 3.03E-70 | -1.69E-46 |
| MS.gene057749 | MS.gene88498 | 0.804271 | 2.34E-49 | -1.69E-46 |
| MS.gene057825 | MS.gene88498 | 0.819845 | 9.38E-53 | -1.69E-46 |
| MS.gene058142 | MS.gene88498 | 0.825614 | 4.26E-54 | -1.69E-46 |
| MS.gene058928 | MS.gene88498 | 0.832023 | 1.20E-55 | -1.69E-46 |
| MS.gene059011 | MS.gene88498 | 0.845008 | 5.31E-59 | -1.69E-46 |
| MS.gene059285 | MS.gene88498 | 0.83547 | 1.65E-56 | -1.69E-46 |
| MS.gene059420 | MS.gene88498 | 0.848911 | 4.53E-60 | -1.69E-46 |
| MS.gene059717 | MS.gene88498 | 0.811833 | 5.74E-51 | -1.69E-46 |
| MS.gene059807 | MS.gene88498 | 0.803888 | 2.81E-49 | -1.69E-46 |
| MS.gene060247 | MS.gene88498 | 0.81484 | 1.26E-51 | -1.69E-46 |
| MS.gene061049 | MS.gene88498 | 0.812585 | 3.94E-51 | -1.69E-46 |
| MS.gene061154 | MS.gene88498 | 0.821589 | 3.73E-53 | -1.69E-46 |
| MS.gene061159 | MS.gene88498 | 0.86154 | 9.55E-64 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88498.t1 | MTR_8g039090 | 94.271 | 192 | 11 | 0 | 1 | 192 | 1 | 192 | 3.96e-134 | 373 |
| MS.gene88498.t1 | MTR_3g019160 | 75.401 | 187 | 46 | 0 | 6 | 192 | 5 | 191 | 5.22e-106 | 302 |
| MS.gene88498.t1 | MTR_3g019090 | 70.745 | 188 | 55 | 0 | 5 | 192 | 4 | 191 | 9.73e-103 | 294 |
| MS.gene88498.t1 | MTR_3g019150 | 71.277 | 188 | 53 | 1 | 5 | 192 | 4 | 190 | 1.03e-98 | 284 |
| MS.gene88498.t1 | MTR_3g019120 | 61.579 | 190 | 70 | 1 | 4 | 190 | 3 | 192 | 3.46e-83 | 251 |
| MS.gene88498.t1 | MTR_3g019120 | 61.579 | 190 | 70 | 1 | 4 | 190 | 3 | 192 | 4.23e-82 | 252 |
| MS.gene88498.t1 | MTR_3g019090 | 71.127 | 142 | 41 | 0 | 51 | 192 | 1 | 142 | 4.11e-77 | 227 |
| MS.gene88498.t1 | MTR_3g019120 | 64.474 | 152 | 54 | 0 | 39 | 190 | 1 | 152 | 3.79e-70 | 220 |
| MS.gene88498.t1 | MTR_3g019150 | 74.000 | 100 | 26 | 0 | 93 | 192 | 35 | 134 | 5.22e-53 | 166 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88498.t1 | AT3G27890 | 74.332 | 187 | 48 | 0 | 5 | 191 | 10 | 196 | 2.33e-101 | 291 |
Find 42 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAAAGTGGCAGCTCTTTC+TGG | 0.181158 | 8.3:-58308837 | MS.gene88498:CDS |
| CTTTGCAGGCATTTACTCTA+AGG | 0.267903 | 8.3:-58307240 | MS.gene88498:CDS |
| CATCTAGACCACCAAATGTT+TGG | 0.329711 | 8.3:-58307477 | MS.gene88498:CDS |
| CATTGAAGAATGCAATTGAT+TGG | 0.367565 | 8.3:-58307501 | MS.gene88498:CDS |
| ATCTAGACCACCAAATGTTT+GGG | 0.385196 | 8.3:-58307476 | MS.gene88498:CDS |
| CCATCATCATTGAACTTTGT+AGG | 0.394651 | 8.3:+58307313 | None:intergenic |
| GCTTTGCCAGCCCAAACATT+TGG | 0.411118 | 8.3:+58307466 | None:intergenic |
| CAATCAATTGCATTCTTCAA+TGG | 0.420729 | 8.3:+58307502 | None:intergenic |
| AAGACGAACCGGCACGGATA+AGG | 0.426161 | 8.3:+58308784 | None:intergenic |
| GCATTTACTCTAAGGCTTCA+AGG | 0.430875 | 8.3:-58307232 | MS.gene88498:CDS |
| ATTGAAGAATGCAATTGATT+GGG | 0.453647 | 8.3:-58307500 | MS.gene88498:CDS |
| TTGCCAGCCCAAACATTTGG+TGG | 0.456284 | 8.3:+58307469 | None:intergenic |
| ATAAGCACTGGAGGAGACTT+TGG | 0.465806 | 8.3:-58307433 | MS.gene88498:CDS |
| GCACTGGAGGAGACTTTGGC+GGG | 0.469020 | 8.3:-58307429 | MS.gene88498:CDS |
| GATGGTGATTTGATTGATGA+AGG | 0.481674 | 8.3:-58307295 | MS.gene88498:CDS |
| TTGAGTAAAGGAGCAATTGA+AGG | 0.490579 | 8.3:-58308669 | MS.gene88498:CDS |
| CCTACAAAGTTCAATGATGA+TGG | 0.515590 | 8.3:-58307313 | MS.gene88498:CDS |
| TTTGATTGATGAAGGGGCTA+AGG | 0.525936 | 8.3:-58307287 | MS.gene88498:CDS |
| CGGCACGGATAAGGCCTGAA+TGG | 0.533476 | 8.3:+58308793 | None:intergenic |
| GCAGCTGCAATCATAAGCAC+TGG | 0.542454 | 8.3:-58307445 | MS.gene88498:CDS |
| GCAGCAATTGAGTTGAGTAA+AGG | 0.545033 | 8.3:-58308681 | MS.gene88498:intron |
| CATTCAGGCCTTATCCGTGC+CGG | 0.552216 | 8.3:-58308792 | MS.gene88498:intron |
| AGACCACCAAATGTTTGGGC+TGG | 0.554510 | 8.3:-58307472 | MS.gene88498:CDS |
| CAAAATAAGACGAACCGGCA+CGG | 0.562436 | 8.3:+58308778 | None:intergenic |
| GAGTATAACTACTCTGTCAC+AGG | 0.571097 | 8.3:-58308507 | MS.gene88498:intron |
| CACTATCATCTACGCCAAGT+TGG | 0.576435 | 8.3:-58307397 | MS.gene88498:CDS |
| AACACTGATCTTGAAAACAA+TGG | 0.576956 | 8.3:-58308603 | MS.gene88498:CDS |
| TCAAGATCAGTGTTGTACAT+TGG | 0.583062 | 8.3:+58308612 | None:intergenic |
| AGCACTGGAGGAGACTTTGG+CGG | 0.584571 | 8.3:-58307430 | MS.gene88498:CDS |
| CGAAAAGCATCAACAAGAGG+TGG | 0.584686 | 8.3:+58308573 | None:intergenic |
| ATGGTGATTTGATTGATGAA+GGG | 0.590104 | 8.3:-58307294 | MS.gene88498:CDS |
| GATCGATATAAATTCCAACT+TGG | 0.591111 | 8.3:+58307383 | None:intergenic |
| TGGTGATTTGATTGATGAAG+GGG | 0.610068 | 8.3:-58307293 | MS.gene88498:CDS |
| ACTGGAGGAGACTTTGGCGG+GGG | 0.627120 | 8.3:-58307427 | MS.gene88498:CDS |
| AATGCTCTTAGAAAGAACTC+AGG | 0.630349 | 8.3:+58307343 | None:intergenic |
| GTGACAGAGTAGTTATACTC+AGG | 0.639364 | 8.3:+58308510 | None:intergenic |
| TCATCATTGAACTTTGTAGG+TGG | 0.645803 | 8.3:+58307316 | None:intergenic |
| CACTGGAGGAGACTTTGGCG+GGG | 0.645839 | 8.3:-58307428 | MS.gene88498:CDS |
| TGGCGAAAAGCATCAACAAG+AGG | 0.647437 | 8.3:+58308570 | None:intergenic |
| GCTGCAATCATAAGCACTGG+AGG | 0.650272 | 8.3:-58307442 | MS.gene88498:CDS |
| TATCAGCTTGAAGAATCTTG+TGG | 0.652286 | 8.3:+58308550 | None:intergenic |
| GGCAGAAGCAGTGATCAAAG+TGG | 0.707321 | 8.3:-58308850 | MS.gene88498:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATGTATATATATAATACTA+CGG | - | chr8.3:58307744-58307763 | MS.gene88498:intron | 10.0% |
| !! | TTATATATATACATATATAG+TGG | + | chr8.3:58307739-58307758 | None:intergenic | 10.0% |
| !! | TTTGTAATTAAAAAATTGTT+AGG | + | chr8.3:58308477-58308496 | None:intergenic | 10.0% |
| !! | AAAAAATTGTTAGGTAGAAA+TGG | + | chr8.3:58308468-58308487 | None:intergenic | 20.0% |
| !! | ATTATTGTTTCATTCATCAA+GGG | + | chr8.3:58307795-58307814 | None:intergenic | 20.0% |
| !! | GTAAACTTAAACTGATATAA+AGG | - | chr8.3:58308368-58308387 | MS.gene88498:intron | 20.0% |
| !!! | TCATTGACATTTTTAGAATT+AGG | - | chr8.3:58307899-58307918 | MS.gene88498:intron | 20.0% |
| !!! | TTTTATTCTTCTATTACTAG+TGG | + | chr8.3:58307645-58307664 | None:intergenic | 20.0% |
| ! | ACAAAAAATAAAGGTGAAGA+TGG | + | chr8.3:58308546-58308565 | None:intergenic | 25.0% |
| ! | AGCCAAAACAATTACAATTA+TGG | + | chr8.3:58308109-58308128 | None:intergenic | 25.0% |
| ! | ATTGAAGAATGCAATTGATT+GGG | - | chr8.3:58308574-58308593 | MS.gene88498:CDS | 25.0% |
| ! | CATTATTGTTTCATTCATCA+AGG | + | chr8.3:58307796-58307815 | None:intergenic | 25.0% |
| ! | TGGAGCTAAACAAAAAATAA+AGG | + | chr8.3:58308555-58308574 | None:intergenic | 25.0% |
| AACACTGATCTTGAAAACAA+TGG | - | chr8.3:58307471-58307490 | MS.gene88498:CDS | 30.0% | |
| ACACTAAGTTTGTGTTTGAT+AGG | + | chr8.3:58308444-58308463 | None:intergenic | 30.0% | |
| ACTATATCTCCGAATTTAGA+AGG | + | chr8.3:58308403-58308422 | None:intergenic | 30.0% | |
| AGAAAAACTTCATACCATTC+AGG | - | chr8.3:58307267-58307286 | MS.gene88498:CDS | 30.0% | |
| ATATACATATATAGTGGCAG+AGG | + | chr8.3:58307733-58307752 | None:intergenic | 30.0% | |
| ATGGGATATTTGATTGCAAT+TGG | - | chr8.3:58308062-58308081 | MS.gene88498:intron | 30.0% | |
| ATGGTGATTTGATTGATGAA+GGG | - | chr8.3:58308780-58308799 | MS.gene88498:intron | 30.0% | |
| CAAAACAAAATAAGACGAAC+CGG | + | chr8.3:58307304-58307323 | None:intergenic | 30.0% | |
| CAATCAATTGCATTCTTCAA+TGG | + | chr8.3:58308575-58308594 | None:intergenic | 30.0% | |
| CACTAAGTTTGTGTTTGATA+GGG | + | chr8.3:58308443-58308462 | None:intergenic | 30.0% | |
| CACTTGTTTAGTAATGCATT+AGG | - | chr8.3:58308182-58308201 | MS.gene88498:intron | 30.0% | |
| CATTGAAGAATGCAATTGAT+TGG | - | chr8.3:58308573-58308592 | MS.gene88498:CDS | 30.0% | |
| CTAATGCATTACTAAACAAG+TGG | + | chr8.3:58308184-58308203 | None:intergenic | 30.0% | |
| CTATATCTCCGAATTTAGAA+GGG | + | chr8.3:58308402-58308421 | None:intergenic | 30.0% | |
| GATCGATATAAATTCCAACT+TGG | + | chr8.3:58308694-58308713 | None:intergenic | 30.0% | |
| TAAACAAGTGGTAAAGCTAT+CGG | + | chr8.3:58308172-58308191 | None:intergenic | 30.0% | |
| TGATTTATGTTCACGTAGTT+CGG | - | chr8.3:58307694-58307713 | MS.gene88498:intron | 30.0% | |
| ! | ACAAGTTCTTTTATCTTTGC+AGG | - | chr8.3:58308820-58308839 | MS.gene88498:CDS | 30.0% |
| ! | ATGGTATGAAGTTTTTCTGA+AGG | + | chr8.3:58307265-58307284 | None:intergenic | 30.0% |
| ! | GGCCATAATTGTAATTGTTT+TGG | - | chr8.3:58308104-58308123 | MS.gene88498:intron | 30.0% |
| !!! | GTTGTAGTTTTGAATTTGCA+TGG | - | chr8.3:58307358-58307377 | MS.gene88498:CDS | 30.0% |
| AAACAAGTGGTAAAGCTATC+GGG | + | chr8.3:58308171-58308190 | None:intergenic | 35.0% | |
| AAATGCAGCCCTTCTAAATT+CGG | - | chr8.3:58308391-58308410 | MS.gene88498:intron | 35.0% | |
| AATGCTCTTAGAAAGAACTC+AGG | + | chr8.3:58308734-58308753 | None:intergenic | 35.0% | |
| ATCTAGACCACCAAATGTTT+GGG | - | chr8.3:58308598-58308617 | MS.gene88498:CDS | 35.0% | |
| ATTGCAAAAACGGTTGCATA+TGG | - | chr8.3:58308291-58308310 | MS.gene88498:intron | 35.0% | |
| CCATCATCATTGAACTTTGT+AGG | + | chr8.3:58308764-58308783 | None:intergenic | 35.0% | |
| CCTACAAAGTTCAATGATGA+TGG | - | chr8.3:58308761-58308780 | MS.gene88498:intron | 35.0% | |
| GATGGTGATTTGATTGATGA+AGG | - | chr8.3:58308779-58308798 | MS.gene88498:intron | 35.0% | |
| GTCAAAGTGAAGGAACTTAA+CGG | - | chr8.3:58308257-58308276 | MS.gene88498:intron | 35.0% | |
| TATCAGCTTGAAGAATCTTG+TGG | + | chr8.3:58307527-58307546 | None:intergenic | 35.0% | |
| TCAAGATCAGTGTTGTACAT+TGG | + | chr8.3:58307465-58307484 | None:intergenic | 35.0% | |
| TCATCATTGAACTTTGTAGG+TGG | + | chr8.3:58308761-58308780 | None:intergenic | 35.0% | |
| TGGTGATTTGATTGATGAAG+GGG | - | chr8.3:58308781-58308800 | MS.gene88498:intron | 35.0% | |
| TTGAGTAAAGGAGCAATTGA+AGG | - | chr8.3:58307405-58307424 | MS.gene88498:CDS | 35.0% | |
| TTTCATTCATCAAGGGTTCA+AGG | + | chr8.3:58307788-58307807 | None:intergenic | 35.0% | |
| ! | CCTCGTTATCTTGCAATTTT+CGG | + | chr8.3:58307672-58307691 | None:intergenic | 35.0% |
| !! | AAGAGGAATTTAGTGGATTC+GGG | + | chr8.3:58308001-58308020 | None:intergenic | 35.0% |
| !! | ATATGCAACCGTTTTTGCAA+TGG | + | chr8.3:58308292-58308311 | None:intergenic | 35.0% |
| !! | CAAGAGGAATTTAGTGGATT+CGG | + | chr8.3:58308002-58308021 | None:intergenic | 35.0% |
| !! | TATGCAACCGTTTTTGCAAT+GGG | + | chr8.3:58308291-58308310 | None:intergenic | 35.0% |
| !! | TTGCAGCTTTGAAATGATGA+CGG | + | chr8.3:58308234-58308253 | None:intergenic | 35.0% |
| AAAGTGAAGGAACTTAACGG+TGG | - | chr8.3:58308260-58308279 | MS.gene88498:intron | 40.0% | |
| AACTTTAACCTTGCGTGTGA+AGG | - | chr8.3:58307965-58307984 | MS.gene88498:intron | 40.0% | |
| ACATATATAGTGGCAGAGGT+AGG | + | chr8.3:58307729-58307748 | None:intergenic | 40.0% | |
| CATCTAGACCACCAAATGTT+TGG | - | chr8.3:58308597-58308616 | MS.gene88498:CDS | 40.0% | |
| CCAATTGCAGCTCATACAAA+TGG | - | chr8.3:58307923-58307942 | MS.gene88498:intron | 40.0% | |
| CCATTTGTATGAGCTGCAAT+TGG | + | chr8.3:58307926-58307945 | None:intergenic | 40.0% | |
| CCGAAAATTGCAAGATAACG+AGG | - | chr8.3:58307669-58307688 | MS.gene88498:intron | 40.0% | |
| CGAATCCACTAAATTCCTCT+TGG | - | chr8.3:58308000-58308019 | MS.gene88498:intron | 40.0% | |
| CTTTGCAGGCATTTACTCTA+AGG | - | chr8.3:58308834-58308853 | MS.gene88498:CDS | 40.0% | |
| GAGTATAACTACTCTGTCAC+AGG | - | chr8.3:58307567-58307586 | MS.gene88498:intron | 40.0% | |
| GCAATTGGATGACTCTAGTT+TGG | - | chr8.3:58308077-58308096 | MS.gene88498:intron | 40.0% | |
| GCTGCAAATTGTCAAAGTGA+AGG | - | chr8.3:58308247-58308266 | MS.gene88498:intron | 40.0% | |
| GGACAATCCCATTGCAAAAA+CGG | - | chr8.3:58308281-58308300 | MS.gene88498:intron | 40.0% | |
| GTGACAGAGTAGTTATACTC+AGG | + | chr8.3:58307567-58307586 | None:intergenic | 40.0% | |
| TCCACTAAATTCCTCTTGGT+AGG | - | chr8.3:58308004-58308023 | MS.gene88498:intron | 40.0% | |
| TTTGATTGATGAAGGGGCTA+AGG | - | chr8.3:58308787-58308806 | MS.gene88498:intron | 40.0% | |
| !! | AGAGGAATTTAGTGGATTCG+GGG | + | chr8.3:58308000-58308019 | None:intergenic | 40.0% |
| !! | GCAGCAATTGAGTTGAGTAA+AGG | - | chr8.3:58307393-58307412 | MS.gene88498:CDS | 40.0% |
| !! | GCATTTACTCTAAGGCTTCA+AGG | - | chr8.3:58308842-58308861 | MS.gene88498:CDS | 40.0% |
| AAACGGTTGCATATGGCTCA+CGG | - | chr8.3:58308298-58308317 | MS.gene88498:intron | 45.0% | |
| AAATATCCCATTCGTGCCGA+GGG | + | chr8.3:58308053-58308072 | None:intergenic | 45.0% | |
| AGTGGTAAAGCTATCGGGTA+TGG | + | chr8.3:58308166-58308185 | None:intergenic | 45.0% | |
| ATCAAAGTGGCAGCTCTTTC+TGG | - | chr8.3:58307237-58307256 | MS.gene88498:CDS | 45.0% | |
| CAAAATAAGACGAACCGGCA+CGG | + | chr8.3:58307299-58307318 | None:intergenic | 45.0% | |
| CACTATCATCTACGCCAAGT+TGG | - | chr8.3:58308677-58308696 | MS.gene88498:CDS | 45.0% | |
| GCCTACCAAGAGGAATTTAG+TGG | + | chr8.3:58308008-58308027 | None:intergenic | 45.0% | |
| ! | GGATGACTCTAGTTTGGTCT+AGG | - | chr8.3:58308083-58308102 | MS.gene88498:intron | 45.0% |
| !! | ATAAGCACTGGAGGAGACTT+TGG | - | chr8.3:58308641-58308660 | MS.gene88498:CDS | 45.0% |
| !! | CGAAAAGCATCAACAAGAGG+TGG | + | chr8.3:58307504-58307523 | None:intergenic | 45.0% |
| !! | GAAATGATGACGGTGTCCTT+GGG | + | chr8.3:58308224-58308243 | None:intergenic | 45.0% |
| !! | TGAAATGATGACGGTGTCCT+TGG | + | chr8.3:58308225-58308244 | None:intergenic | 45.0% |
| !! | TGGCGAAAAGCATCAACAAG+AGG | + | chr8.3:58307507-58307526 | None:intergenic | 45.0% |
| AGACCACCAAATGTTTGGGC+TGG | - | chr8.3:58308602-58308621 | MS.gene88498:CDS | 50.0% | |
| ATACATCCCTCGGCACGAAT+GGG | - | chr8.3:58308044-58308063 | MS.gene88498:intron | 50.0% | |
| CAAATATCCCATTCGTGCCG+AGG | + | chr8.3:58308054-58308073 | None:intergenic | 50.0% | |
| GATTCGAACCTTCACACGCA+AGG | + | chr8.3:58307976-58307995 | None:intergenic | 50.0% | |
| GCAGCTGCAATCATAAGCAC+TGG | - | chr8.3:58308629-58308648 | MS.gene88498:CDS | 50.0% | |
| GCTTTGCCAGCCCAAACATT+TGG | + | chr8.3:58308611-58308630 | None:intergenic | 50.0% | |
| GGCAGAAGCAGTGATCAAAG+TGG | - | chr8.3:58307224-58307243 | MS.gene88498:CDS | 50.0% | |
| TTGCCAGCCCAAACATTTGG+TGG | + | chr8.3:58308608-58308627 | None:intergenic | 50.0% | |
| ! | AACGTTTTTCTCGCGTCCCA+AGG | - | chr8.3:58308205-58308224 | MS.gene88498:intron | 50.0% |
| !! | GCTGCAATCATAAGCACTGG+AGG | - | chr8.3:58308632-58308651 | MS.gene88498:CDS | 50.0% |
| AAGACGAACCGGCACGGATA+AGG | + | chr8.3:58307293-58307312 | None:intergenic | 55.0% | |
| GATACATCCCTCGGCACGAA+TGG | - | chr8.3:58308043-58308062 | MS.gene88498:intron | 55.0% | |
| GTGGCAGAGGTAGGCATCAT+TGG | + | chr8.3:58307720-58307739 | None:intergenic | 55.0% | |
| TGCCGAGGGATGTATCAACG+CGG | + | chr8.3:58308039-58308058 | None:intergenic | 55.0% | |
| ! | AGCACTGGAGGAGACTTTGG+CGG | - | chr8.3:58308644-58308663 | MS.gene88498:CDS | 55.0% |
| ! | CATTCAGGCCTTATCCGTGC+CGG | - | chr8.3:58307282-58307301 | MS.gene88498:CDS | 55.0% |
| ACTGGAGGAGACTTTGGCGG+GGG | - | chr8.3:58308647-58308666 | MS.gene88498:CDS | 60.0% | |
| AGGGATGTATCAACGCGGGG+AGG | + | chr8.3:58308034-58308053 | None:intergenic | 60.0% | |
| CACTGGAGGAGACTTTGGCG+GGG | - | chr8.3:58308646-58308665 | MS.gene88498:CDS | 60.0% | |
| CCGAGGGATGTATCAACGCG+GGG | + | chr8.3:58308037-58308056 | None:intergenic | 60.0% | |
| CGGCACGGATAAGGCCTGAA+TGG | + | chr8.3:58307284-58307303 | None:intergenic | 60.0% | |
| GCACTGGAGGAGACTTTGGC+GGG | - | chr8.3:58308645-58308664 | MS.gene88498:CDS | 60.0% | |
| GCCGAGGGATGTATCAACGC+GGG | + | chr8.3:58308038-58308057 | None:intergenic | 60.0% | |
| GGGATGTATCAACGCGGGGA+GGG | + | chr8.3:58308033-58308052 | None:intergenic | 60.0% | |
| ! | CCCCGCGTTGATACATCCCT+CGG | - | chr8.3:58308034-58308053 | MS.gene88498:intron | 60.0% |
| GGGGAGGGTTGCCTACCAAG+AGG | + | chr8.3:58308018-58308037 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 58307222 | 58308874 | 58307222 | ID=MS.gene88498 |
| chr8.3 | mRNA | 58307222 | 58308874 | 58307222 | ID=MS.gene88498.t1;Parent=MS.gene88498 |
| chr8.3 | exon | 58308793 | 58308874 | 58308793 | ID=MS.gene88498.t1.exon1;Parent=MS.gene88498.t1 |
| chr8.3 | CDS | 58308793 | 58308874 | 58308793 | ID=cds.MS.gene88498.t1;Parent=MS.gene88498.t1 |
| chr8.3 | exon | 58308508 | 58308699 | 58308508 | ID=MS.gene88498.t1.exon2;Parent=MS.gene88498.t1 |
| chr8.3 | CDS | 58308508 | 58308699 | 58308508 | ID=cds.MS.gene88498.t1;Parent=MS.gene88498.t1 |
| chr8.3 | exon | 58307222 | 58307526 | 58307222 | ID=MS.gene88498.t1.exon3;Parent=MS.gene88498.t1 |
| chr8.3 | CDS | 58307222 | 58307526 | 58307222 | ID=cds.MS.gene88498.t1;Parent=MS.gene88498.t1 |
| Gene Sequence |
| Protein sequence |
