Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89511.t1 | XP_024639583.1 | 95.5 | 179 | 8 | 0 | 1 | 179 | 273 | 451 | 1.60E-90 | 342 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89511.t1 | Q9SGZ5 | 50.8 | 181 | 82 | 3 | 1 | 179 | 592 | 767 | 1.3e-43 | 177.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89511.t1 | G7KA75 | 95.5 | 179 | 8 | 0 | 1 | 179 | 607 | 785 | 1.2e-90 | 342.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene89511 | 0.811233 | 7.76E-51 | -1.69E-46 |
| MS.gene049424 | MS.gene89511 | 0.833223 | 6.03E-56 | -1.69E-46 |
| MS.gene049653 | MS.gene89511 | 0.800639 | 1.31E-48 | -1.69E-46 |
| MS.gene050303 | MS.gene89511 | 0.824199 | 9.18E-54 | -1.69E-46 |
| MS.gene050605 | MS.gene89511 | 0.827932 | 1.19E-54 | -1.69E-46 |
| MS.gene050750 | MS.gene89511 | 0.802541 | 5.34E-49 | -1.69E-46 |
| MS.gene050953 | MS.gene89511 | 0.814415 | 1.56E-51 | -1.69E-46 |
| MS.gene050987 | MS.gene89511 | 0.829583 | 4.75E-55 | -1.69E-46 |
| MS.gene051243 | MS.gene89511 | 0.825488 | 4.56E-54 | -1.69E-46 |
| MS.gene051349 | MS.gene89511 | 0.817514 | 3.17E-52 | -1.69E-46 |
| MS.gene05134 | MS.gene89511 | 0.809606 | 1.74E-50 | -1.69E-46 |
| MS.gene051370 | MS.gene89511 | 0.805537 | 1.27E-49 | -1.69E-46 |
| MS.gene051452 | MS.gene89511 | 0.813182 | 2.91E-51 | -1.69E-46 |
| MS.gene052286 | MS.gene89511 | 0.808845 | 2.53E-50 | -1.69E-46 |
| MS.gene052376 | MS.gene89511 | 0.814077 | 1.85E-51 | -1.69E-46 |
| MS.gene052426 | MS.gene89511 | 0.82728 | 1.71E-54 | -1.69E-46 |
| MS.gene052500 | MS.gene89511 | 0.851035 | 1.15E-60 | -1.69E-46 |
| MS.gene052502 | MS.gene89511 | 0.847988 | 8.16E-60 | -1.69E-46 |
| MS.gene052824 | MS.gene89511 | 0.820601 | 6.29E-53 | -1.69E-46 |
| MS.gene052826 | MS.gene89511 | 0.850739 | 1.40E-60 | -1.69E-46 |
| MS.gene052954 | MS.gene89511 | 0.842373 | 2.69E-58 | -1.69E-46 |
| MS.gene053006 | MS.gene89511 | 0.83335 | 5.61E-56 | -1.69E-46 |
| MS.gene053080 | MS.gene89511 | 0.831793 | 1.36E-55 | -1.69E-46 |
| MS.gene053188 | MS.gene89511 | 0.815506 | 8.93E-52 | -1.69E-46 |
| MS.gene053216 | MS.gene89511 | 0.801246 | 9.86E-49 | -1.69E-46 |
| MS.gene053931 | MS.gene89511 | 0.820383 | 7.06E-53 | -1.69E-46 |
| MS.gene054405 | MS.gene89511 | 0.807925 | 3.98E-50 | -1.69E-46 |
| MS.gene054537 | MS.gene89511 | 0.818797 | 1.62E-52 | -1.69E-46 |
| MS.gene054657 | MS.gene89511 | 0.837224 | 5.90E-57 | -1.69E-46 |
| MS.gene05510 | MS.gene89511 | 0.824974 | 6.03E-54 | -1.69E-46 |
| MS.gene055230 | MS.gene89511 | 0.808188 | 3.50E-50 | -1.69E-46 |
| MS.gene055623 | MS.gene89511 | 0.812356 | 4.42E-51 | -1.69E-46 |
| MS.gene055701 | MS.gene89511 | 0.812925 | 3.32E-51 | -1.69E-46 |
| MS.gene055808 | MS.gene89511 | 0.813312 | 2.73E-51 | -1.69E-46 |
| MS.gene055841 | MS.gene89511 | 0.816397 | 5.65E-52 | -1.69E-46 |
| MS.gene056506 | MS.gene89511 | 0.818026 | 2.43E-52 | -1.69E-46 |
| MS.gene056631 | MS.gene89511 | 0.801754 | 7.75E-49 | -1.69E-46 |
| MS.gene057060 | MS.gene89511 | 0.82499 | 5.98E-54 | -1.69E-46 |
| MS.gene057079 | MS.gene89511 | 0.814677 | 1.36E-51 | -1.69E-46 |
| MS.gene057140 | MS.gene89511 | 0.815567 | 8.65E-52 | -1.69E-46 |
| MS.gene057208 | MS.gene89511 | 0.813314 | 2.72E-51 | -1.69E-46 |
| MS.gene057392 | MS.gene89511 | 0.830176 | 3.40E-55 | -1.69E-46 |
| MS.gene057555 | MS.gene89511 | 0.823216 | 1.56E-53 | -1.69E-46 |
| MS.gene057693 | MS.gene89511 | 0.820824 | 5.59E-53 | -1.69E-46 |
| MS.gene057869 | MS.gene89511 | 0.800953 | 1.13E-48 | -1.69E-46 |
| MS.gene05795 | MS.gene89511 | 0.824927 | 6.19E-54 | -1.69E-46 |
| MS.gene058146 | MS.gene89511 | 0.821646 | 3.62E-53 | -1.69E-46 |
| MS.gene058548 | MS.gene89511 | 0.843221 | 1.60E-58 | -1.69E-46 |
| MS.gene058595 | MS.gene89511 | 0.836051 | 1.17E-56 | -1.69E-46 |
| MS.gene058979 | MS.gene89511 | 0.813937 | 1.99E-51 | -1.69E-46 |
| MS.gene059317 | MS.gene89511 | 0.842881 | 1.97E-58 | -1.69E-46 |
| MS.gene05954 | MS.gene89511 | 0.806211 | 9.18E-50 | -1.69E-46 |
| MS.gene059569 | MS.gene89511 | 0.816344 | 5.80E-52 | -1.69E-46 |
| MS.gene05979 | MS.gene89511 | 0.82564 | 4.20E-54 | -1.69E-46 |
| MS.gene059830 | MS.gene89511 | 0.813383 | 2.63E-51 | -1.69E-46 |
| MS.gene060297 | MS.gene89511 | 0.812698 | 3.72E-51 | -1.69E-46 |
| MS.gene060310 | MS.gene89511 | 0.825434 | 4.70E-54 | -1.69E-46 |
| MS.gene060322 | MS.gene89511 | 0.804862 | 1.76E-49 | -1.69E-46 |
| MS.gene060429 | MS.gene89511 | 0.804388 | 2.21E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89511.t1 | MTR_5g062650 | 95.531 | 179 | 8 | 0 | 1 | 179 | 607 | 785 | 1.55e-109 | 330 |
| MS.gene89511.t1 | MTR_5g062430 | 95.531 | 179 | 8 | 0 | 1 | 179 | 604 | 782 | 1.48e-108 | 327 |
| MS.gene89511.t1 | MTR_5g062370 | 94.413 | 179 | 10 | 0 | 1 | 179 | 604 | 782 | 1.77e-107 | 325 |
| MS.gene89511.t1 | MTR_5g062320 | 93.296 | 179 | 12 | 0 | 1 | 179 | 602 | 780 | 6.17e-106 | 320 |
| MS.gene89511.t1 | MTR_3g074060 | 63.687 | 179 | 65 | 0 | 1 | 179 | 598 | 776 | 7.39e-81 | 255 |
| MS.gene89511.t1 | MTR_5g030860 | 38.172 | 186 | 106 | 2 | 1 | 179 | 599 | 782 | 1.25e-35 | 131 |
| MS.gene89511.t1 | MTR_2g034720 | 36.932 | 176 | 100 | 3 | 1 | 175 | 587 | 752 | 7.80e-31 | 117 |
| MS.gene89511.t1 | MTR_2g008240 | 34.254 | 181 | 108 | 4 | 1 | 179 | 604 | 775 | 1.36e-30 | 117 |
| MS.gene89511.t1 | MTR_1g106860 | 34.359 | 195 | 103 | 4 | 1 | 180 | 591 | 775 | 2.06e-29 | 114 |
| MS.gene89511.t1 | MTR_1g087240 | 34.595 | 185 | 100 | 4 | 1 | 177 | 584 | 755 | 9.31e-28 | 108 |
| MS.gene89511.t1 | MTR_4g094285 | 34.595 | 185 | 102 | 4 | 1 | 179 | 603 | 774 | 9.61e-28 | 108 |
| MS.gene89511.t1 | MTR_7g109390 | 35.676 | 185 | 99 | 6 | 1 | 177 | 589 | 761 | 7.26e-25 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene89511.t1 | AT1G78060 | 51.381 | 181 | 81 | 4 | 1 | 179 | 592 | 767 | 1.83e-56 | 189 |
| MS.gene89511.t1 | AT5G10560 | 38.122 | 181 | 108 | 1 | 1 | 177 | 610 | 790 | 2.48e-36 | 133 |
| MS.gene89511.t1 | AT3G19620 | 36.782 | 174 | 97 | 4 | 1 | 169 | 593 | 758 | 4.98e-28 | 110 |
| MS.gene89511.t1 | AT5G09700 | 37.912 | 182 | 105 | 3 | 1 | 179 | 350 | 526 | 1.76e-27 | 107 |
| MS.gene89511.t1 | AT5G09730 | 36.957 | 184 | 104 | 4 | 1 | 179 | 597 | 773 | 2.75e-27 | 107 |
| MS.gene89511.t1 | AT1G02640 | 34.463 | 177 | 107 | 3 | 1 | 177 | 591 | 758 | 3.12e-26 | 104 |
| MS.gene89511.t1 | AT5G64570 | 36.364 | 187 | 102 | 4 | 1 | 179 | 607 | 784 | 1.23e-25 | 103 |
| MS.gene89511.t1 | AT5G64570 | 36.364 | 187 | 102 | 4 | 1 | 179 | 449 | 626 | 1.26e-25 | 102 |
| MS.gene89511.t1 | AT5G49360 | 35.326 | 184 | 100 | 7 | 1 | 175 | 595 | 768 | 2.07e-24 | 99.8 |
Find 51 sgRNAs with CRISPR-Local
Find 52 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCCATTTCTACCTTTCTT+TGG | 0.223144 | 5.4:+48817129 | None:intergenic |
| AGCAAATGAGAGTGGTGTTA+AGG | 0.359751 | 5.4:-48817007 | MS.gene89511:CDS |
| TACAAACTTCTTTCAGAGTT+AGG | 0.361224 | 5.4:-48817249 | MS.gene89511:CDS |
| ACATTGGGAATTACAAATAC+TGG | 0.371416 | 5.4:-48817192 | MS.gene89511:CDS |
| TTTGACGGAAATGAAGTTGT+AGG | 0.372591 | 5.4:+48817338 | None:intergenic |
| GGAGGTGGAAAGGGTGAAGT+TGG | 0.374363 | 5.4:-48817063 | MS.gene89511:CDS |
| AACCCTACCAATTGTTTCAC+TGG | 0.387990 | 5.4:+48817105 | None:intergenic |
| ACAAATACTGGAAGCATGGC+TGG | 0.392102 | 5.4:-48817180 | MS.gene89511:CDS |
| GGTCCAAAGGTCTATGAATT+CGG | 0.410970 | 5.4:-48817387 | MS.gene89511:CDS |
| AGGTGGTTATTTGTTGGTTG+TGG | 0.420306 | 5.4:-48816974 | MS.gene89511:CDS |
| AAGCCAAAGAAAGGTAGAAA+TGG | 0.439382 | 5.4:-48817132 | MS.gene89511:CDS |
| CTCATTCTCATGTCTGTCAT+TGG | 0.443342 | 5.4:+48817459 | None:intergenic |
| ACTCTGAAAGAAGTTTGTAA+TGG | 0.444238 | 5.4:+48817253 | None:intergenic |
| TTTGAGAGTGTGACGGTGGA+AGG | 0.447503 | 5.4:-48817084 | MS.gene89511:CDS |
| GTATCGAATAAGTGGTTGAT+TGG | 0.453731 | 5.4:+48817295 | None:intergenic |
| TAGCCGAATTCATAGACCTT+TGG | 0.462008 | 5.4:+48817384 | None:intergenic |
| AATTCCCAATGTGACAGAAA+TGG | 0.462642 | 5.4:+48817203 | None:intergenic |
| ATGTCCATTTCTGTCACATT+GGG | 0.462961 | 5.4:-48817207 | MS.gene89511:CDS |
| ACGGTGGAAGGAGGTGGAAA+GGG | 0.469710 | 5.4:-48817072 | MS.gene89511:CDS |
| TTATTTGTTGGTTGTGGGAG+AGG | 0.471909 | 5.4:-48816968 | MS.gene89511:CDS |
| GGTGGTTATTTGTTGGTTGT+GGG | 0.491601 | 5.4:-48816973 | MS.gene89511:CDS |
| TGGAAATCCAGTGAAACAAT+TGG | 0.493184 | 5.4:-48817112 | MS.gene89511:CDS |
| GACGGTGGAAGGAGGTGGAA+AGG | 0.507657 | 5.4:-48817073 | MS.gene89511:CDS |
| CATGTCCATTTCTGTCACAT+TGG | 0.509436 | 5.4:-48817208 | MS.gene89511:CDS |
| ATGAGAGCTGATCCATCATC+AGG | 0.511303 | 5.4:-48817441 | MS.gene89511:CDS |
| GTAGAAACGGTAGGTTCTAC+CGG | 0.511605 | 5.4:+48817413 | None:intergenic |
| TACTCAATAAATATCACTGT+TGG | 0.517582 | 5.4:-48816940 | MS.gene89511:CDS |
| CTACCGGGATAGCCTGATGA+TGG | 0.517596 | 5.4:+48817429 | None:intergenic |
| TGGTTGATTGGTTGATGTGA+AGG | 0.517616 | 5.4:+48817307 | None:intergenic |
| TGAAGAAGGTGGTTATTTGT+TGG | 0.528173 | 5.4:-48816980 | MS.gene89511:CDS |
| CCTTTGGACCTGTGTAGAAA+CGG | 0.540578 | 5.4:+48817400 | None:intergenic |
| ATCCAGTGAAACAATTGGTA+GGG | 0.540797 | 5.4:-48817107 | MS.gene89511:CDS |
| GATCCATCATCAGGCTATCC+CGG | 0.542828 | 5.4:-48817432 | MS.gene89511:CDS |
| TTGTTTGTGAAGCCAAAGAA+AGG | 0.545721 | 5.4:-48817141 | MS.gene89511:CDS |
| AAGGTCTATGAATTCGGCTA+TGG | 0.553533 | 5.4:-48817381 | MS.gene89511:CDS |
| AATCCAGTGAAACAATTGGT+AGG | 0.554451 | 5.4:-48817108 | MS.gene89511:CDS |
| CAAATACTGGAAGCATGGCT+GGG | 0.573487 | 5.4:-48817179 | MS.gene89511:CDS |
| GAGAGTGTGACGGTGGAAGG+AGG | 0.575492 | 5.4:-48817081 | MS.gene89511:CDS |
| AGTGTGACGGTGGAAGGAGG+TGG | 0.578214 | 5.4:-48817078 | MS.gene89511:CDS |
| AATTACAAATACTGGAAGCA+TGG | 0.582605 | 5.4:-48817184 | MS.gene89511:CDS |
| CAATGTGACAGAAATGGACA+TGG | 0.599069 | 5.4:+48817209 | None:intergenic |
| GGTGTTAAGGTGATTGAAGA+AGG | 0.603997 | 5.4:-48816994 | MS.gene89511:CDS |
| CCGTTTCTACACAGGTCCAA+AGG | 0.609130 | 5.4:-48817400 | MS.gene89511:CDS |
| GGCTTCACAAACAACAACAC+AGG | 0.609698 | 5.4:+48817150 | None:intergenic |
| AGAACCTACCGTTTCTACAC+AGG | 0.612051 | 5.4:-48817408 | MS.gene89511:CDS |
| GTTAAGGTGATTGAAGAAGG+TGG | 0.615321 | 5.4:-48816991 | MS.gene89511:CDS |
| TGGACCTGTGTAGAAACGGT+AGG | 0.625209 | 5.4:+48817404 | None:intergenic |
| AGGGTTTGAGAGTGTGACGG+TGG | 0.638866 | 5.4:-48817088 | MS.gene89511:CDS |
| TAGAAACGGTAGGTTCTACC+GGG | 0.648311 | 5.4:+48817414 | None:intergenic |
| CTTAGTAGAGCAAATGAGAG+TGG | 0.648348 | 5.4:-48817015 | MS.gene89511:CDS |
| GGTAGGGTTTGAGAGTGTGA+CGG | 0.652219 | 5.4:-48817091 | MS.gene89511:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TACTCAATAAATATCACTGT+TGG | - | chr5.4:48817452-48817471 | MS.gene89511:CDS | 25.0% |
| AATTACAAATACTGGAAGCA+TGG | - | chr5.4:48817208-48817227 | MS.gene89511:CDS | 30.0% | |
| ACATTGGGAATTACAAATAC+TGG | - | chr5.4:48817200-48817219 | MS.gene89511:CDS | 30.0% | |
| TACAAACTTCTTTCAGAGTT+AGG | - | chr5.4:48817143-48817162 | MS.gene89511:CDS | 30.0% | |
| TTTCCATTTCTACCTTTCTT+TGG | + | chr5.4:48817266-48817285 | None:intergenic | 30.0% | |
| ! | ACTCTGAAAGAAGTTTGTAA+TGG | + | chr5.4:48817142-48817161 | None:intergenic | 30.0% |
| !!! | GTGAAGGTTGTTATTTTTGA+CGG | + | chr5.4:48817072-48817091 | None:intergenic | 30.0% |
| AAGCCAAAGAAAGGTAGAAA+TGG | - | chr5.4:48817260-48817279 | MS.gene89511:CDS | 35.0% | |
| AATCCAGTGAAACAATTGGT+AGG | - | chr5.4:48817284-48817303 | MS.gene89511:CDS | 35.0% | |
| AATTCCCAATGTGACAGAAA+TGG | + | chr5.4:48817192-48817211 | None:intergenic | 35.0% | |
| ATCCAGTGAAACAATTGGTA+GGG | - | chr5.4:48817285-48817304 | MS.gene89511:CDS | 35.0% | |
| ATGTCCATTTCTGTCACATT+GGG | - | chr5.4:48817185-48817204 | MS.gene89511:CDS | 35.0% | |
| GTATCGAATAAGTGGTTGAT+TGG | + | chr5.4:48817100-48817119 | None:intergenic | 35.0% | |
| TGAAGAAGGTGGTTATTTGT+TGG | - | chr5.4:48817412-48817431 | MS.gene89511:CDS | 35.0% | |
| TGGAAATCCAGTGAAACAAT+TGG | - | chr5.4:48817280-48817299 | MS.gene89511:CDS | 35.0% | |
| TTGTTTGTGAAGCCAAAGAA+AGG | - | chr5.4:48817251-48817270 | MS.gene89511:CDS | 35.0% | |
| TTTGACGGAAATGAAGTTGT+AGG | + | chr5.4:48817057-48817076 | None:intergenic | 35.0% | |
| !!! | CTTTTCGAGTATCGAATAAG+TGG | + | chr5.4:48817108-48817127 | None:intergenic | 35.0% |
| AACCCTACCAATTGTTTCAC+TGG | + | chr5.4:48817290-48817309 | None:intergenic | 40.0% | |
| AAGGTCTATGAATTCGGCTA+TGG | - | chr5.4:48817011-48817030 | MS.gene89511:CDS | 40.0% | |
| CAATGTGACAGAAATGGACA+TGG | + | chr5.4:48817186-48817205 | None:intergenic | 40.0% | |
| CATGTCCATTTCTGTCACAT+TGG | - | chr5.4:48817184-48817203 | MS.gene89511:CDS | 40.0% | |
| CTTAGTAGAGCAAATGAGAG+TGG | - | chr5.4:48817377-48817396 | MS.gene89511:CDS | 40.0% | |
| GGTCCAAAGGTCTATGAATT+CGG | - | chr5.4:48817005-48817024 | MS.gene89511:CDS | 40.0% | |
| GGTGTTAAGGTGATTGAAGA+AGG | - | chr5.4:48817398-48817417 | MS.gene89511:CDS | 40.0% | |
| GTTAAGGTGATTGAAGAAGG+TGG | - | chr5.4:48817401-48817420 | MS.gene89511:CDS | 40.0% | |
| TAGCCGAATTCATAGACCTT+TGG | + | chr5.4:48817011-48817030 | None:intergenic | 40.0% | |
| ! | AGCAAATGAGAGTGGTGTTA+AGG | - | chr5.4:48817385-48817404 | MS.gene89511:CDS | 40.0% |
| ! | AGGTGGTTATTTGTTGGTTG+TGG | - | chr5.4:48817418-48817437 | MS.gene89511:CDS | 40.0% |
| ! | GGTGGTTATTTGTTGGTTGT+GGG | - | chr5.4:48817419-48817438 | MS.gene89511:CDS | 40.0% |
| ! | TGGTTGATTGGTTGATGTGA+AGG | + | chr5.4:48817088-48817107 | None:intergenic | 40.0% |
| ! | TTATTTGTTGGTTGTGGGAG+AGG | - | chr5.4:48817424-48817443 | MS.gene89511:CDS | 40.0% |
| AGAACCTACCGTTTCTACAC+AGG | - | chr5.4:48816984-48817003 | MS.gene89511:CDS | 45.0% | |
| ATGAGAGCTGATCCATCATC+AGG | - | chr5.4:48816951-48816970 | MS.gene89511:CDS | 45.0% | |
| CCTTTGGACCTGTGTAGAAA+CGG | + | chr5.4:48816995-48817014 | None:intergenic | 45.0% | |
| GGCTTCACAAACAACAACAC+AGG | + | chr5.4:48817245-48817264 | None:intergenic | 45.0% | |
| GTAGAAACGGTAGGTTCTAC+CGG | + | chr5.4:48816982-48817001 | None:intergenic | 45.0% | |
| TAGAAACGGTAGGTTCTACC+GGG | + | chr5.4:48816981-48817000 | None:intergenic | 45.0% | |
| ! | ACAAATACTGGAAGCATGGC+TGG | - | chr5.4:48817212-48817231 | MS.gene89511:CDS | 45.0% |
| ! | CAAATACTGGAAGCATGGCT+GGG | - | chr5.4:48817213-48817232 | MS.gene89511:CDS | 45.0% |
| CCGTTTCTACACAGGTCCAA+AGG | - | chr5.4:48816992-48817011 | MS.gene89511:CDS | 50.0% | |
| GATCCATCATCAGGCTATCC+CGG | - | chr5.4:48816960-48816979 | MS.gene89511:CDS | 50.0% | |
| TGGACCTGTGTAGAAACGGT+AGG | + | chr5.4:48816991-48817010 | None:intergenic | 50.0% | |
| ! | GGTAGGGTTTGAGAGTGTGA+CGG | - | chr5.4:48817301-48817320 | MS.gene89511:CDS | 50.0% |
| ! | TTTGAGAGTGTGACGGTGGA+AGG | - | chr5.4:48817308-48817327 | MS.gene89511:CDS | 50.0% |
| ACGGTGGAAGGAGGTGGAAA+GGG | - | chr5.4:48817320-48817339 | MS.gene89511:CDS | 55.0% | |
| CTACCGGGATAGCCTGATGA+TGG | + | chr5.4:48816966-48816985 | None:intergenic | 55.0% | |
| GGAGGTGGAAAGGGTGAAGT+TGG | - | chr5.4:48817329-48817348 | MS.gene89511:CDS | 55.0% | |
| ! | AGGGTTTGAGAGTGTGACGG+TGG | - | chr5.4:48817304-48817323 | MS.gene89511:CDS | 55.0% |
| AGTGTGACGGTGGAAGGAGG+TGG | - | chr5.4:48817314-48817333 | MS.gene89511:CDS | 60.0% | |
| GACGGTGGAAGGAGGTGGAA+AGG | - | chr5.4:48817319-48817338 | MS.gene89511:CDS | 60.0% | |
| ! | GAGAGTGTGACGGTGGAAGG+AGG | - | chr5.4:48817311-48817330 | MS.gene89511:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 48816936 | 48817478 | 48816936 | ID=MS.gene89511 |
| chr5.4 | mRNA | 48816936 | 48817478 | 48816936 | ID=MS.gene89511.t1;Parent=MS.gene89511 |
| chr5.4 | exon | 48816936 | 48817478 | 48816936 | ID=MS.gene89511.t1.exon1;Parent=MS.gene89511.t1 |
| chr5.4 | CDS | 48816936 | 48817478 | 48816936 | ID=cds.MS.gene89511.t1;Parent=MS.gene89511.t1 |
| Gene Sequence |
| Protein sequence |
