Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93200.t1 | RHN77926.1 | 96.1 | 153 | 6 | 0 | 1 | 153 | 1 | 153 | 7.40E-76 | 293.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93200.t1 | Q7Y1X1 | 64.5 | 141 | 49 | 1 | 13 | 152 | 11 | 151 | 7.3e-48 | 191.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93200.t1 | A0A396JI75 | 96.1 | 153 | 6 | 0 | 1 | 153 | 1 | 153 | 5.3e-76 | 293.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04932 | MS.gene93200 | 0.812071 | 5.10E-51 | -1.69E-46 |
| MS.gene049488 | MS.gene93200 | -0.802327 | 5.91E-49 | -1.69E-46 |
| MS.gene050444 | MS.gene93200 | -0.803043 | 4.21E-49 | -1.69E-46 |
| MS.gene050670 | MS.gene93200 | -0.800701 | 1.27E-48 | -1.69E-46 |
| MS.gene050710 | MS.gene93200 | 0.821055 | 4.95E-53 | -1.69E-46 |
| MS.gene050809 | MS.gene93200 | 0.827817 | 1.27E-54 | -1.69E-46 |
| MS.gene05080 | MS.gene93200 | -0.802134 | 6.48E-49 | -1.69E-46 |
| MS.gene05081 | MS.gene93200 | -0.807162 | 5.78E-50 | -1.69E-46 |
| MS.gene051552 | MS.gene93200 | 0.815347 | 9.69E-52 | -1.69E-46 |
| MS.gene051666 | MS.gene93200 | -0.807875 | 4.08E-50 | -1.69E-46 |
| MS.gene051838 | MS.gene93200 | -0.83734 | 5.51E-57 | -1.69E-46 |
| MS.gene051996 | MS.gene93200 | 0.825921 | 3.60E-54 | -1.69E-46 |
| MS.gene052223 | MS.gene93200 | 0.822713 | 2.04E-53 | -1.69E-46 |
| MS.gene05240 | MS.gene93200 | 0.824849 | 6.46E-54 | -1.69E-46 |
| MS.gene052414 | MS.gene93200 | -0.814626 | 1.40E-51 | -1.69E-46 |
| MS.gene05244 | MS.gene93200 | 0.804151 | 2.48E-49 | -1.69E-46 |
| MS.gene052501 | MS.gene93200 | -0.802761 | 4.81E-49 | -1.69E-46 |
| MS.gene052503 | MS.gene93200 | -0.813055 | 3.11E-51 | -1.69E-46 |
| MS.gene052505 | MS.gene93200 | -0.800632 | 1.32E-48 | -1.69E-46 |
| MS.gene052702 | MS.gene93200 | 0.808505 | 3.00E-50 | -1.69E-46 |
| MS.gene052706 | MS.gene93200 | 0.805351 | 1.39E-49 | -1.69E-46 |
| MS.gene052823 | MS.gene93200 | -0.812652 | 3.81E-51 | -1.69E-46 |
| MS.gene052825 | MS.gene93200 | -0.813455 | 2.54E-51 | -1.69E-46 |
| MS.gene053632 | MS.gene93200 | -0.801792 | 7.62E-49 | -1.69E-46 |
| MS.gene054181 | MS.gene93200 | 0.803479 | 3.42E-49 | -1.69E-46 |
| MS.gene054290 | MS.gene93200 | 0.826706 | 2.34E-54 | -1.69E-46 |
| MS.gene054706 | MS.gene93200 | 0.824367 | 8.39E-54 | -1.69E-46 |
| MS.gene054742 | MS.gene93200 | 0.854383 | 1.28E-61 | -1.69E-46 |
| MS.gene054884 | MS.gene93200 | 0.81917 | 1.34E-52 | -1.69E-46 |
| MS.gene055159 | MS.gene93200 | 0.806248 | 9.02E-50 | -1.69E-46 |
| MS.gene055206 | MS.gene93200 | -0.812192 | 4.80E-51 | -1.69E-46 |
| MS.gene055577 | MS.gene93200 | -0.807115 | 5.92E-50 | -1.69E-46 |
| MS.gene055941 | MS.gene93200 | -0.805104 | 1.57E-49 | -1.69E-46 |
| MS.gene056330 | MS.gene93200 | 0.815347 | 9.69E-52 | -1.69E-46 |
| MS.gene056387 | MS.gene93200 | -0.812261 | 4.63E-51 | -1.69E-46 |
| MS.gene056511 | MS.gene93200 | -0.802067 | 6.69E-49 | -1.69E-46 |
| MS.gene056590 | MS.gene93200 | 0.81841 | 1.99E-52 | -1.69E-46 |
| MS.gene056591 | MS.gene93200 | 0.816765 | 4.67E-52 | -1.69E-46 |
| MS.gene056678 | MS.gene93200 | 0.811026 | 8.60E-51 | -1.69E-46 |
| MS.gene056688 | MS.gene93200 | 0.833962 | 3.94E-56 | -1.69E-46 |
| MS.gene056697 | MS.gene93200 | 0.823749 | 1.17E-53 | -1.69E-46 |
| MS.gene056920 | MS.gene93200 | 0.835593 | 1.53E-56 | -1.69E-46 |
| MS.gene056923 | MS.gene93200 | 0.822522 | 2.26E-53 | -1.69E-46 |
| MS.gene056924 | MS.gene93200 | 0.829924 | 3.92E-55 | -1.69E-46 |
| MS.gene056925 | MS.gene93200 | 0.812976 | 3.23E-51 | -1.69E-46 |
| MS.gene057086 | MS.gene93200 | -0.820994 | 5.11E-53 | -1.69E-46 |
| MS.gene057544 | MS.gene93200 | 0.836202 | 1.07E-56 | -1.69E-46 |
| MS.gene057658 | MS.gene93200 | -0.807816 | 4.20E-50 | -1.69E-46 |
| MS.gene057717 | MS.gene93200 | 0.809906 | 1.50E-50 | -1.69E-46 |
| MS.gene057734 | MS.gene93200 | -0.800259 | 1.57E-48 | -1.69E-46 |
| MS.gene057856 | MS.gene93200 | -0.810164 | 1.32E-50 | -1.69E-46 |
| MS.gene058067 | MS.gene93200 | 0.803362 | 3.61E-49 | -1.69E-46 |
| MS.gene058158 | MS.gene93200 | 0.831518 | 1.60E-55 | -1.69E-46 |
| MS.gene058177 | MS.gene93200 | 0.806624 | 7.51E-50 | -1.69E-46 |
| MS.gene058418 | MS.gene93200 | 0.824872 | 6.38E-54 | -1.69E-46 |
| MS.gene058544 | MS.gene93200 | -0.815167 | 1.06E-51 | -1.69E-46 |
| MS.gene058838 | MS.gene93200 | -0.813329 | 2.70E-51 | -1.69E-46 |
| MS.gene05926 | MS.gene93200 | 0.861047 | 1.35E-63 | -1.69E-46 |
| MS.gene059328 | MS.gene93200 | 0.802702 | 4.95E-49 | -1.69E-46 |
| MS.gene059402 | MS.gene93200 | 0.809167 | 2.16E-50 | -1.69E-46 |
| MS.gene059955 | MS.gene93200 | 0.804533 | 2.06E-49 | -1.69E-46 |
| MS.gene060087 | MS.gene93200 | 0.844558 | 7.02E-59 | -1.69E-46 |
| MS.gene060405 | MS.gene93200 | 0.816845 | 4.48E-52 | -1.69E-46 |
| MS.gene060835 | MS.gene93200 | -0.806677 | 7.32E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93200.t1 | MTR_1g030268 | 84.416 | 154 | 23 | 1 | 1 | 153 | 4 | 157 | 3.19e-87 | 258 |
| MS.gene93200.t1 | MTR_1g030268 | 84.416 | 154 | 23 | 1 | 1 | 153 | 4 | 157 | 1.84e-86 | 258 |
| MS.gene93200.t1 | MTR_1g030275 | 79.739 | 153 | 31 | 0 | 1 | 153 | 4 | 156 | 1.55e-82 | 248 |
| MS.gene93200.t1 | MTR_1g030230 | 83.007 | 153 | 22 | 1 | 1 | 153 | 1 | 149 | 1.46e-81 | 245 |
| MS.gene93200.t1 | MTR_1g030220 | 62.069 | 145 | 53 | 1 | 11 | 153 | 13 | 157 | 1.92e-56 | 181 |
| MS.gene93200.t1 | MTR_1g030262 | 94.118 | 85 | 5 | 0 | 1 | 85 | 1 | 85 | 8.26e-53 | 162 |
| MS.gene93200.t1 | MTR_7g087190 | 51.034 | 145 | 70 | 1 | 10 | 153 | 17 | 161 | 2.15e-46 | 155 |
| MS.gene93200.t1 | MTR_8g089805 | 52.229 | 157 | 68 | 3 | 2 | 153 | 3 | 157 | 3.48e-46 | 155 |
| MS.gene93200.t1 | MTR_1g030340 | 55.102 | 147 | 63 | 2 | 9 | 153 | 15 | 160 | 2.39e-45 | 152 |
| MS.gene93200.t1 | MTR_7g033165 | 57.025 | 121 | 52 | 0 | 28 | 148 | 25 | 145 | 2.58e-40 | 137 |
| MS.gene93200.t1 | MTR_7g033165 | 57.025 | 121 | 52 | 0 | 28 | 148 | 25 | 145 | 1.01e-39 | 137 |
| MS.gene93200.t1 | MTR_7g116870 | 48.611 | 144 | 74 | 0 | 10 | 153 | 7 | 150 | 1.42e-39 | 137 |
| MS.gene93200.t1 | MTR_1g030265 | 95.714 | 70 | 3 | 0 | 84 | 153 | 53 | 122 | 7.17e-39 | 135 |
| MS.gene93200.t1 | MTR_8g028160 | 46.980 | 149 | 77 | 1 | 1 | 149 | 1 | 147 | 8.69e-39 | 135 |
| MS.gene93200.t1 | MTR_7g033150 | 47.368 | 133 | 65 | 2 | 15 | 143 | 10 | 141 | 5.59e-36 | 128 |
| MS.gene93200.t1 | MTR_6g007090 | 43.791 | 153 | 79 | 2 | 1 | 153 | 4 | 149 | 1.05e-35 | 127 |
| MS.gene93200.t1 | MTR_7g033155 | 52.101 | 119 | 56 | 1 | 28 | 146 | 30 | 147 | 1.59e-33 | 122 |
| MS.gene93200.t1 | MTR_6g007095 | 42.405 | 158 | 73 | 4 | 7 | 153 | 1 | 151 | 1.54e-32 | 121 |
| MS.gene93200.t1 | MTR_6g007095 | 46.364 | 110 | 52 | 2 | 44 | 153 | 378 | 480 | 1.50e-22 | 93.2 |
| MS.gene93200.t1 | MTR_8g038680 | 45.270 | 148 | 70 | 3 | 7 | 153 | 1 | 138 | 4.14e-32 | 117 |
| MS.gene93200.t1 | MTR_8g012540 | 46.207 | 145 | 67 | 4 | 10 | 153 | 4 | 138 | 9.22e-32 | 116 |
| MS.gene93200.t1 | MTR_6g007100 | 43.056 | 144 | 75 | 2 | 7 | 150 | 4 | 140 | 6.11e-31 | 114 |
| MS.gene93200.t1 | MTR_1g082390 | 46.154 | 143 | 67 | 5 | 12 | 151 | 7 | 142 | 3.33e-28 | 107 |
| MS.gene93200.t1 | MTR_7g113860 | 48.800 | 125 | 58 | 4 | 25 | 147 | 18 | 138 | 3.99e-28 | 107 |
| MS.gene93200.t1 | MTR_7g111780 | 46.512 | 129 | 50 | 5 | 21 | 147 | 30 | 141 | 4.52e-27 | 103 |
| MS.gene93200.t1 | MTR_7g113860 | 40.288 | 139 | 75 | 5 | 12 | 147 | 11 | 144 | 1.63e-22 | 92.0 |
| MS.gene93200.t1 | MTR_2g015650 | 45.082 | 122 | 57 | 3 | 34 | 145 | 29 | 150 | 2.04e-22 | 91.7 |
| MS.gene93200.t1 | MTR_2g015580 | 35.669 | 157 | 89 | 5 | 1 | 145 | 12 | 168 | 3.60e-19 | 82.8 |
| MS.gene93200.t1 | MTR_2g015590 | 41.481 | 135 | 64 | 6 | 24 | 145 | 18 | 150 | 3.65e-19 | 82.4 |
| MS.gene93200.t1 | MTR_2g015590 | 41.481 | 135 | 64 | 6 | 24 | 145 | 18 | 150 | 7.29e-19 | 82.0 |
| MS.gene93200.t1 | MTR_0029s0100 | 40.678 | 118 | 64 | 3 | 34 | 145 | 28 | 145 | 9.71e-19 | 81.6 |
| MS.gene93200.t1 | MTR_0029s0050 | 40.678 | 118 | 64 | 3 | 34 | 145 | 28 | 145 | 1.12e-18 | 81.3 |
| MS.gene93200.t1 | MTR_2g015670 | 51.685 | 89 | 36 | 2 | 34 | 115 | 29 | 117 | 2.08e-18 | 80.5 |
| MS.gene93200.t1 | MTR_2g079080 | 39.831 | 118 | 65 | 3 | 34 | 145 | 28 | 145 | 6.21e-18 | 79.3 |
| MS.gene93200.t1 | MTR_2g079090 | 39.831 | 118 | 65 | 3 | 34 | 145 | 28 | 145 | 6.73e-18 | 79.0 |
| MS.gene93200.t1 | MTR_2g043980 | 42.241 | 116 | 61 | 3 | 34 | 143 | 32 | 147 | 8.07e-18 | 79.0 |
| MS.gene93200.t1 | MTR_3g069780 | 42.276 | 123 | 56 | 6 | 34 | 145 | 28 | 146 | 8.30e-18 | 79.0 |
| MS.gene93200.t1 | MTR_3g463960 | 39.669 | 121 | 63 | 4 | 34 | 145 | 42 | 161 | 9.22e-18 | 79.0 |
| MS.gene93200.t1 | MTR_3g463950 | 39.669 | 121 | 63 | 4 | 34 | 145 | 42 | 161 | 9.22e-18 | 79.0 |
| MS.gene93200.t1 | MTR_3g463970 | 39.669 | 121 | 63 | 4 | 34 | 145 | 42 | 161 | 9.22e-18 | 79.0 |
| MS.gene93200.t1 | MTR_3g463940 | 39.669 | 121 | 63 | 4 | 34 | 145 | 42 | 161 | 9.22e-18 | 79.0 |
| MS.gene93200.t1 | MTR_4g104240 | 40.000 | 120 | 63 | 2 | 34 | 144 | 37 | 156 | 2.35e-17 | 77.8 |
| MS.gene93200.t1 | MTR_3g463930 | 38.583 | 127 | 65 | 5 | 34 | 148 | 42 | 167 | 7.26e-17 | 76.6 |
| MS.gene93200.t1 | MTR_3g438030 | 41.463 | 123 | 57 | 6 | 34 | 145 | 28 | 146 | 7.40e-17 | 76.3 |
| MS.gene93200.t1 | MTR_3g448360 | 40.000 | 120 | 64 | 4 | 34 | 145 | 27 | 146 | 1.13e-16 | 75.9 |
| MS.gene93200.t1 | MTR_2g043990 | 40.336 | 119 | 59 | 4 | 34 | 143 | 94 | 209 | 9.28e-16 | 73.2 |
| MS.gene93200.t1 | MTR_8g089805 | 48.571 | 70 | 36 | 0 | 84 | 153 | 20 | 89 | 1.59e-15 | 72.4 |
| MS.gene93200.t1 | MTR_3g069520 | 38.462 | 117 | 67 | 2 | 34 | 145 | 28 | 144 | 1.92e-15 | 72.4 |
| MS.gene93200.t1 | MTR_8g031400 | 41.121 | 107 | 55 | 2 | 36 | 137 | 37 | 140 | 2.87e-13 | 66.2 |
| MS.gene93200.t1 | MTR_8g022810 | 38.211 | 123 | 62 | 4 | 13 | 124 | 18 | 137 | 4.18e-13 | 65.5 |
| MS.gene93200.t1 | MTR_8g022810 | 38.211 | 123 | 62 | 4 | 13 | 124 | 18 | 137 | 4.36e-13 | 65.9 |
| MS.gene93200.t1 | MTR_2g015630 | 36.134 | 119 | 63 | 4 | 41 | 146 | 36 | 154 | 1.06e-12 | 64.7 |
| MS.gene93200.t1 | MTR_8g031420 | 33.333 | 126 | 71 | 3 | 33 | 153 | 32 | 149 | 8.80e-12 | 62.0 |
| MS.gene93200.t1 | MTR_5g009100 | 37.838 | 111 | 60 | 4 | 38 | 142 | 48 | 155 | 1.46e-11 | 61.2 |
| MS.gene93200.t1 | MTR_8g031430 | 37.383 | 107 | 59 | 2 | 36 | 137 | 37 | 140 | 4.41e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93200.t1 | AT3G26430 | 54.930 | 142 | 64 | 0 | 12 | 153 | 7 | 148 | 8.85e-51 | 166 |
| MS.gene93200.t1 | AT5G14450 | 52.555 | 137 | 65 | 0 | 14 | 150 | 19 | 155 | 6.17e-44 | 149 |
| MS.gene93200.t1 | AT1G67830 | 56.557 | 122 | 53 | 0 | 32 | 153 | 26 | 147 | 3.06e-43 | 146 |
| MS.gene93200.t1 | AT4G01130 | 52.113 | 142 | 65 | 1 | 2 | 143 | 3 | 141 | 1.26e-41 | 141 |
| MS.gene93200.t1 | AT4G01130 | 52.113 | 142 | 65 | 1 | 2 | 143 | 3 | 141 | 4.71e-41 | 141 |
| MS.gene93200.t1 | AT3G27950 | 48.936 | 141 | 64 | 3 | 15 | 153 | 10 | 144 | 2.45e-36 | 129 |
| MS.gene93200.t1 | AT1G09390 | 45.333 | 150 | 71 | 5 | 1 | 147 | 1 | 142 | 1.45e-29 | 110 |
| MS.gene93200.t1 | AT1G56670 | 47.143 | 140 | 62 | 5 | 10 | 147 | 16 | 145 | 2.19e-28 | 106 |
| MS.gene93200.t1 | AT1G56670 | 47.143 | 140 | 62 | 5 | 10 | 147 | 16 | 145 | 7.65e-28 | 106 |
| MS.gene93200.t1 | AT1G54790 | 44.056 | 143 | 73 | 5 | 7 | 147 | 3 | 140 | 2.11e-26 | 102 |
| MS.gene93200.t1 | AT1G54790 | 44.056 | 143 | 73 | 5 | 7 | 147 | 3 | 140 | 2.35e-26 | 102 |
| MS.gene93200.t1 | AT1G54790 | 49.138 | 116 | 53 | 4 | 34 | 147 | 30 | 141 | 1.58e-25 | 100 |
| MS.gene93200.t1 | AT5G45910 | 45.600 | 125 | 55 | 3 | 34 | 145 | 28 | 152 | 2.54e-23 | 94.4 |
| MS.gene93200.t1 | AT3G62280 | 46.957 | 115 | 51 | 4 | 35 | 148 | 35 | 140 | 2.64e-23 | 93.2 |
| MS.gene93200.t1 | AT3G62280 | 46.957 | 115 | 51 | 4 | 35 | 148 | 35 | 140 | 5.95e-23 | 93.2 |
| MS.gene93200.t1 | AT3G05180 | 43.443 | 122 | 60 | 4 | 33 | 151 | 33 | 148 | 7.14e-23 | 93.2 |
| MS.gene93200.t1 | AT1G28590 | 38.312 | 154 | 86 | 2 | 1 | 145 | 1 | 154 | 3.70e-22 | 91.3 |
| MS.gene93200.t1 | AT1G28600 | 40.645 | 155 | 75 | 5 | 1 | 145 | 1 | 148 | 5.42e-22 | 88.2 |
| MS.gene93200.t1 | AT1G31550 | 44.628 | 121 | 59 | 2 | 33 | 145 | 33 | 153 | 7.10e-22 | 90.5 |
| MS.gene93200.t1 | AT1G31550 | 44.628 | 121 | 59 | 2 | 33 | 145 | 33 | 153 | 8.08e-22 | 90.1 |
| MS.gene93200.t1 | AT1G28580 | 39.456 | 147 | 76 | 3 | 12 | 145 | 9 | 155 | 3.09e-21 | 88.6 |
| MS.gene93200.t1 | AT1G28600 | 40.645 | 155 | 75 | 5 | 1 | 145 | 1 | 148 | 3.78e-21 | 88.6 |
| MS.gene93200.t1 | AT1G28650 | 38.462 | 156 | 82 | 4 | 11 | 152 | 9 | 164 | 5.04e-21 | 88.2 |
| MS.gene93200.t1 | AT1G28570 | 38.776 | 147 | 79 | 3 | 10 | 145 | 6 | 152 | 5.28e-21 | 88.2 |
| MS.gene93200.t1 | AT1G28610 | 37.662 | 154 | 82 | 3 | 1 | 145 | 1 | 149 | 2.40e-20 | 84.3 |
| MS.gene93200.t1 | AT1G28610 | 37.662 | 154 | 82 | 3 | 1 | 145 | 1 | 149 | 1.16e-19 | 84.3 |
| MS.gene93200.t1 | AT1G28640 | 39.041 | 146 | 77 | 3 | 12 | 145 | 8 | 153 | 2.90e-19 | 83.2 |
| MS.gene93200.t1 | AT1G28660 | 38.356 | 146 | 78 | 3 | 12 | 145 | 8 | 153 | 4.53e-19 | 82.8 |
| MS.gene93200.t1 | AT1G28660 | 38.356 | 146 | 78 | 3 | 12 | 145 | 8 | 153 | 4.83e-19 | 82.4 |
| MS.gene93200.t1 | AT1G28670 | 38.065 | 155 | 82 | 4 | 12 | 152 | 8 | 162 | 1.52e-18 | 81.3 |
| MS.gene93200.t1 | AT2G27360 | 36.735 | 147 | 81 | 4 | 9 | 145 | 7 | 151 | 1.67e-18 | 81.3 |
| MS.gene93200.t1 | AT3G48460 | 37.302 | 126 | 64 | 4 | 34 | 144 | 36 | 161 | 1.79e-15 | 72.4 |
| MS.gene93200.t1 | AT1G71120 | 40.385 | 104 | 52 | 2 | 23 | 116 | 18 | 121 | 1.46e-13 | 67.0 |
| MS.gene93200.t1 | AT4G01130 | 58.182 | 55 | 23 | 0 | 89 | 143 | 1 | 55 | 2.67e-13 | 65.9 |
| MS.gene93200.t1 | AT4G10950 | 37.719 | 114 | 62 | 5 | 35 | 142 | 70 | 180 | 9.41e-12 | 62.0 |
| MS.gene93200.t1 | AT5G03590 | 38.384 | 99 | 56 | 2 | 20 | 116 | 22 | 117 | 9.52e-11 | 57.8 |
Find 29 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTCTTTGTAGCAAATAT+TGG | 0.178924 | 1.3:-16054911 | None:intergenic |
| TACTGAATTTGAAGGGAAAA+TGG | 0.224045 | 1.3:-16056985 | None:intergenic |
| CCATTGGGTATAATACTATT+AGG | 0.269389 | 1.3:-16056952 | None:intergenic |
| TGGCACAAATAGAGTTTCTT+AGG | 0.276916 | 1.3:+16054840 | MS.gene93200:CDS |
| AATTCTTTGTAGCAAATATT+GGG | 0.277876 | 1.3:-16054910 | None:intergenic |
| CGAATCATTCTTGATTTCAT+AGG | 0.296923 | 1.3:+16055067 | MS.gene93200:CDS |
| AAATGCTGATACTGGTGGTT+TGG | 0.396433 | 1.3:+16054967 | MS.gene93200:CDS |
| GCACCAAAGTTAAATATTGC+AGG | 0.407053 | 1.3:-16054941 | None:intergenic |
| GGTGCTTCAAATGCTGATAC+TGG | 0.421451 | 1.3:+16054959 | MS.gene93200:CDS |
| ATTAAGATATGGACTTAGGT+AGG | 0.436390 | 1.3:-16056866 | None:intergenic |
| TTTCCTGCAATATTTAACTT+TGG | 0.440023 | 1.3:+16054938 | MS.gene93200:CDS |
| GATCCTAGAGAATTAAGATA+TGG | 0.444570 | 1.3:-16056877 | None:intergenic |
| CAAGCACTTCAGTTGCCAAA+TGG | 0.446432 | 1.3:+16055001 | MS.gene93200:CDS |
| AGTCCATATCTTAATTCTCT+AGG | 0.487332 | 1.3:+16056874 | MS.gene93200:CDS |
| AAATGGACTAAACATTCCAT+TGG | 0.487410 | 1.3:-16056968 | None:intergenic |
| GAGAATTAAGATATGGACTT+AGG | 0.490134 | 1.3:-16056870 | None:intergenic |
| CTATGAAATCAAGAATGATT+CGG | 0.493581 | 1.3:-16055066 | None:intergenic |
| GGTGCAAACTTTGCAACAGC+AGG | 0.502492 | 1.3:+16056913 | MS.gene93200:CDS |
| TGGCAACTGAAGTGCTTGAA+AGG | 0.511071 | 1.3:-16054996 | None:intergenic |
| ATTGATTGTACTGAATTTGA+AGG | 0.512446 | 1.3:-16056993 | None:intergenic |
| AATGGACTAAACATTCCATT+GGG | 0.529064 | 1.3:-16056967 | None:intergenic |
| ATTCTTTGTAGCAAATATTG+GGG | 0.543366 | 1.3:-16054909 | None:intergenic |
| TTAAGATATGGACTTAGGTA+GGG | 0.544125 | 1.3:-16056865 | None:intergenic |
| TTGATTGTACTGAATTTGAA+GGG | 0.569678 | 1.3:-16056992 | None:intergenic |
| CCTAATAGTATTATACCCAA+TGG | 0.577765 | 1.3:+16056952 | MS.gene93200:CDS |
| GCTTCAAATGCTGATACTGG+TGG | 0.598979 | 1.3:+16054962 | MS.gene93200:CDS |
| CTAGGATCAAACTTCACACA+TGG | 0.612367 | 1.3:+16056892 | MS.gene93200:CDS |
| GTGCAAACTTTGCAACAGCA+GGG | 0.631688 | 1.3:+16056914 | MS.gene93200:CDS |
| TTCTTTGTAGCAAATATTGG+GGG | 0.645637 | 1.3:-16054908 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTATAAAAAATAATA+AGG | - | chr1.3:16056303-16056322 | None:intergenic | 0.0% |
| !! | TAATATTGATCTTTAATAAA+TGG | + | chr1.3:16056161-16056180 | MS.gene93200:intron | 10.0% |
| !!! | AATTATTTCTATATTTATGA+AGG | + | chr1.3:16056797-16056816 | MS.gene93200:intron | 10.0% |
| !!! | ATTATTTCTATATTTATGAA+GGG | + | chr1.3:16056798-16056817 | MS.gene93200:intron | 10.0% |
| !!! | GTCTTTTTTATTATTATATT+TGG | - | chr1.3:16056616-16056635 | None:intergenic | 10.0% |
| !!! | TATAAGAGTATTAATTAATT+TGG | + | chr1.3:16056132-16056151 | MS.gene93200:intron | 10.0% |
| !!! | TTTTTTTTAATTCTTTTTTG+AGG | - | chr1.3:16055291-16055310 | None:intergenic | 10.0% |
| !! | AAAAGAATTAAAAAAAACTG+TGG | + | chr1.3:16055294-16055313 | MS.gene93200:intron | 15.0% |
| !!! | ATAAATGGTTTTTTTTTTTG+TGG | + | chr1.3:16056176-16056195 | MS.gene93200:intron | 15.0% |
| !!! | ATATTTTTTGTTGAGATTTA+AGG | - | chr1.3:16056518-16056537 | None:intergenic | 15.0% |
| !!! | TCAATTGATTTTATCTTTAT+TGG | - | chr1.3:16056701-16056720 | None:intergenic | 15.0% |
| !! | AAAAATTACTAGACTTAATG+TGG | - | chr1.3:16055773-16055792 | None:intergenic | 20.0% |
| !! | AATTATGATTATTATTAGGC+GGG | - | chr1.3:16056447-16056466 | None:intergenic | 20.0% |
| !! | AATTCTTTGTAGCAAATATT+GGG | - | chr1.3:16054913-16054932 | None:intergenic | 20.0% |
| !! | ATGTTCATACAAAATGAAAT+AGG | - | chr1.3:16055110-16055129 | None:intergenic | 20.0% |
| !! | ATTAGAGAATTCAAATTGTA+TGG | + | chr1.3:16055354-16055373 | MS.gene93200:intron | 20.0% |
| !! | CAATTATGATTATTATTAGG+CGG | - | chr1.3:16056448-16056467 | None:intergenic | 20.0% |
| !! | CACCAATTATGATTATTATT+AGG | - | chr1.3:16056451-16056470 | None:intergenic | 20.0% |
| !! | TTAGAGAATTCAAATTGTAT+GGG | + | chr1.3:16055355-16055374 | MS.gene93200:intron | 20.0% |
| !!! | AGTCTAGTAATTTTTTTCAA+AGG | + | chr1.3:16055778-16055797 | MS.gene93200:intron | 20.0% |
| !!! | GTGTGATTTTTAAGAAAATA+GGG | - | chr1.3:16055492-16055511 | None:intergenic | 20.0% |
| !!! | GTTTTATCATAGAAACAATA+TGG | + | chr1.3:16055401-16055420 | MS.gene93200:intron | 20.0% |
| !!! | TGTGATTTTTAAGAAAATAG+GGG | - | chr1.3:16055491-16055510 | None:intergenic | 20.0% |
| !!! | TGTGTGATTTTTAAGAAAAT+AGG | - | chr1.3:16055493-16055512 | None:intergenic | 20.0% |
| !!! | TTAATTCTTTTTTGAGGAAA+CGG | - | chr1.3:16055285-16055304 | None:intergenic | 20.0% |
| !!! | TTTTTGCTTATATTTTGAGA+CGG | - | chr1.3:16055821-16055840 | None:intergenic | 20.0% |
| ! | ATTCTTTGTAGCAAATATTG+GGG | - | chr1.3:16054912-16054931 | None:intergenic | 25.0% |
| ! | ATTGATTGTACTGAATTTGA+AGG | - | chr1.3:16056996-16057015 | None:intergenic | 25.0% |
| ! | CAATTCTTTGTAGCAAATAT+TGG | - | chr1.3:16054914-16054933 | None:intergenic | 25.0% |
| ! | CATTTCCTCAAAAAACAAAA+AGG | + | chr1.3:16055598-16055617 | MS.gene93200:intron | 25.0% |
| ! | CGCCTAATAATAATCATAAT+TGG | + | chr1.3:16056446-16056465 | MS.gene93200:intron | 25.0% |
| ! | CTATGAAATCAAGAATGATT+CGG | - | chr1.3:16055069-16055088 | None:intergenic | 25.0% |
| ! | GACAATGCATAATATATACA+AGG | - | chr1.3:16056224-16056243 | None:intergenic | 25.0% |
| ! | GTGGTTTAACTAAAAAACAA+TGG | - | chr1.3:16055754-16055773 | None:intergenic | 25.0% |
| ! | TTGATTGTACTGAATTTGAA+GGG | - | chr1.3:16056995-16057014 | None:intergenic | 25.0% |
| !! | ACGAATTTTTCCTTGTATTT+TGG | + | chr1.3:16055902-16055921 | MS.gene93200:intron | 25.0% |
| !! | CGAATTTTTCCTTGTATTTT+GGG | + | chr1.3:16055903-16055922 | MS.gene93200:intron | 25.0% |
| !! | GTTTTGTCGTATAAATATGA+GGG | - | chr1.3:16055952-16055971 | None:intergenic | 25.0% |
| !! | TCTCTAATGATTTTTGCTTT+TGG | - | chr1.3:16057033-16057052 | None:intergenic | 25.0% |
| !! | TGTTTTGTCGTATAAATATG+AGG | - | chr1.3:16055953-16055972 | None:intergenic | 25.0% |
| !! | TTTCCTGCAATATTTAACTT+TGG | + | chr1.3:16054938-16054957 | MS.gene93200:CDS | 25.0% |
| !!! | AATGGTTTTTTTTTTTGTGG+TGG | + | chr1.3:16056179-16056198 | MS.gene93200:intron | 25.0% |
| !!! | ACTTTTTTCAATAGATCAAC+TGG | + | chr1.3:16055028-16055047 | MS.gene93200:CDS | 25.0% |
| !!! | ATTAGAGAACTTAAGTTGAA+TGG | - | chr1.3:16056013-16056032 | None:intergenic | 25.0% |
| !!! | TTAGAGAACTTAAGTTGAAT+GGG | - | chr1.3:16056012-16056031 | None:intergenic | 25.0% |
| AGAAACGTATTTCTCTCATT+AGG | - | chr1.3:16056082-16056101 | None:intergenic | 30.0% | |
| AGTCCATATCTTAATTCTCT+AGG | + | chr1.3:16056874-16056893 | MS.gene93200:CDS | 30.0% | |
| ATACTCTTATAGTAGATGCA+CGG | - | chr1.3:16056123-16056142 | None:intergenic | 30.0% | |
| ATTAAGATATGGACTTAGGT+AGG | - | chr1.3:16056869-16056888 | None:intergenic | 30.0% | |
| CATAATATATACAAGGTCCA+GGG | - | chr1.3:16056217-16056236 | None:intergenic | 30.0% | |
| CATTCAAACAACTATTTGTG+TGG | + | chr1.3:16055220-16055239 | MS.gene93200:intron | 30.0% | |
| CCATTGGGTATAATACTATT+AGG | - | chr1.3:16056955-16056974 | None:intergenic | 30.0% | |
| CCTAATAGTATTATACCCAA+TGG | + | chr1.3:16056952-16056971 | MS.gene93200:CDS | 30.0% | |
| CCTCAAAAAACAAAAAGGTT+TGG | + | chr1.3:16055603-16055622 | MS.gene93200:intron | 30.0% | |
| CGAATCATTCTTGATTTCAT+AGG | + | chr1.3:16055067-16055086 | MS.gene93200:CDS | 30.0% | |
| CTTTGTGCTGAAGAAAAAAA+TGG | - | chr1.3:16056835-16056854 | None:intergenic | 30.0% | |
| GAGAATTAAGATATGGACTT+AGG | - | chr1.3:16056873-16056892 | None:intergenic | 30.0% | |
| GATCCTAGAGAATTAAGATA+TGG | - | chr1.3:16056880-16056899 | None:intergenic | 30.0% | |
| GTTCTCTAATGAGAGAAATA+CGG | + | chr1.3:16056023-16056042 | MS.gene93200:intron | 30.0% | |
| TACTGAATTTGAAGGGAAAA+TGG | - | chr1.3:16056988-16057007 | None:intergenic | 30.0% | |
| TGTTAAATAAGAAGCTCACA+TGG | + | chr1.3:16056724-16056743 | MS.gene93200:intron | 30.0% | |
| TTAAGATATGGACTTAGGTA+GGG | - | chr1.3:16056868-16056887 | None:intergenic | 30.0% | |
| TTCTTTGTAGCAAATATTGG+GGG | - | chr1.3:16054911-16054930 | None:intergenic | 30.0% | |
| TTGAAAAAAGTCTCTCCATT+TGG | - | chr1.3:16055019-16055038 | None:intergenic | 30.0% | |
| ! | CTAGTATTCGTGTATTGATA+AGG | - | chr1.3:16055695-16055714 | None:intergenic | 30.0% |
| !! | AAATGGACTAAACATTCCAT+TGG | - | chr1.3:16056971-16056990 | None:intergenic | 30.0% |
| !! | AATGGACTAAACATTCCATT+GGG | - | chr1.3:16056970-16056989 | None:intergenic | 30.0% |
| !! | AGTCATCATTTCTTTTTCGT+TGG | + | chr1.3:16055552-16055571 | MS.gene93200:intron | 30.0% |
| !! | GTTTGATGATGTATCTTCTA+CGG | - | chr1.3:16055664-16055683 | None:intergenic | 30.0% |
| !! | TGTTCATCACTTTTGAAAAG+TGG | + | chr1.3:16055147-16055166 | MS.gene93200:intron | 30.0% |
| !! | TTTTAAGAAAATAGGGGTGA+GGG | - | chr1.3:16055485-16055504 | None:intergenic | 30.0% |
| !! | TTTTTAAGAAAATAGGGGTG+AGG | - | chr1.3:16055486-16055505 | None:intergenic | 30.0% |
| !!! | CCAAACCTTTTTGTTTTTTG+AGG | - | chr1.3:16055606-16055625 | None:intergenic | 30.0% |
| !!! | TTTTTTTTTTTGTGGTGGCT+GGG | + | chr1.3:16056184-16056203 | MS.gene93200:intron | 30.0% |
| ACACTATATAGAAGCTCACA+TGG | + | chr1.3:16056759-16056778 | MS.gene93200:intron | 35.0% | |
| CAAAACACAAAGATATCAGC+AGG | + | chr1.3:16056472-16056491 | MS.gene93200:intron | 35.0% | |
| GATAAAACATGATCATGTGC+TGG | - | chr1.3:16055389-16055408 | None:intergenic | 35.0% | |
| GCACCAAAGTTAAATATTGC+AGG | - | chr1.3:16054944-16054963 | None:intergenic | 35.0% | |
| GCATAATATATACAAGGTCC+AGG | - | chr1.3:16056218-16056237 | None:intergenic | 35.0% | |
| TGGCACAAATAGAGTTTCTT+AGG | + | chr1.3:16054840-16054859 | MS.gene93200:CDS | 35.0% | |
| ! | CTGCTGATATCTTTGTGTTT+TGG | - | chr1.3:16056474-16056493 | None:intergenic | 35.0% |
| ! | TCAACTGGAAGATTTTCTGA+TGG | + | chr1.3:16055043-16055062 | MS.gene93200:CDS | 35.0% |
| ! | TTTTCTTCAGCACAAAGCTT+TGG | + | chr1.3:16056838-16056857 | MS.gene93200:intron | 35.0% |
| !!! | GTTTTTTTTTTTGTGGTGGC+TGG | + | chr1.3:16056183-16056202 | MS.gene93200:intron | 35.0% |
| !!! | TTTTTTTTTTGTGGTGGCTG+GGG | + | chr1.3:16056185-16056204 | MS.gene93200:intron | 35.0% |
| AAATGCTGATACTGGTGGTT+TGG | + | chr1.3:16054967-16054986 | MS.gene93200:CDS | 40.0% | |
| CTAGGATCAAACTTCACACA+TGG | + | chr1.3:16056892-16056911 | MS.gene93200:CDS | 40.0% | |
| GATCTATCGTTACGCCATTT+AGG | - | chr1.3:16056281-16056300 | None:intergenic | 40.0% | |
| GATCTCTTATCGTAGATGCA+TGG | + | chr1.3:16055242-16055261 | MS.gene93200:intron | 40.0% | |
| GTGCGTGCAACTATAATCTT+TGG | + | chr1.3:16055978-16055997 | MS.gene93200:intron | 40.0% | |
| TCCATCAGTCCCAAAATACA+AGG | - | chr1.3:16055915-16055934 | None:intergenic | 40.0% | |
| TCTCTCATTAGGTAGATGCT+CGG | - | chr1.3:16056071-16056090 | None:intergenic | 40.0% | |
| !!! | TCCTTGTATTTTGGGACTGA+TGG | + | chr1.3:16055911-16055930 | MS.gene93200:intron | 40.0% |
| CAAGCACTTCAGTTGCCAAA+TGG | + | chr1.3:16055001-16055020 | MS.gene93200:CDS | 45.0% | |
| CACGACGACTCTTTCCTAAA+TGG | + | chr1.3:16056264-16056283 | MS.gene93200:intron | 45.0% | |
| GCTTCAAATGCTGATACTGG+TGG | + | chr1.3:16054962-16054981 | MS.gene93200:CDS | 45.0% | |
| GGTGCTTCAAATGCTGATAC+TGG | + | chr1.3:16054959-16054978 | MS.gene93200:CDS | 45.0% | |
| GTGCAAACTTTGCAACAGCA+GGG | + | chr1.3:16056914-16056933 | MS.gene93200:CDS | 45.0% | |
| ! | TGAGCTTAGCTAAGTTGGCA+TGG | - | chr1.3:16056246-16056265 | None:intergenic | 45.0% |
| ! | TGGCAACTGAAGTGCTTGAA+AGG | - | chr1.3:16054999-16055018 | None:intergenic | 45.0% |
| !! | ATGCTCGGTGCAACAATTGT+GGG | - | chr1.3:16056056-16056075 | None:intergenic | 45.0% |
| !! | TTTTGAGGAAACGGTCTCCA+TGG | - | chr1.3:16055276-16055295 | None:intergenic | 45.0% |
| CGTCGTGAGCTTAGCTAAGT+TGG | - | chr1.3:16056251-16056270 | None:intergenic | 50.0% | |
| GATGCACGGTGCAACAATTG+TGG | - | chr1.3:16056109-16056128 | None:intergenic | 50.0% | |
| GATGCATGGTGCAACAACCA+TGG | + | chr1.3:16055256-16055275 | MS.gene93200:intron | 50.0% | |
| GGTGCAAACTTTGCAACAGC+AGG | + | chr1.3:16056913-16056932 | MS.gene93200:CDS | 50.0% | |
| !! | GATGCTCGGTGCAACAATTG+TGG | - | chr1.3:16056057-16056076 | None:intergenic | 50.0% |
| !! | TGCTCGGTGCAACAATTGTG+GGG | - | chr1.3:16056055-16056074 | None:intergenic | 50.0% |
| GGTGGCTGGGGTTTGAACCC+TGG | + | chr1.3:16056197-16056216 | MS.gene93200:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 16054839 | 16057057 | 16054839 | ID=MS.gene93200 |
| chr1.3 | mRNA | 16054839 | 16057057 | 16054839 | ID=MS.gene93200.t1;Parent=MS.gene93200 |
| chr1.3 | exon | 16054839 | 16055088 | 16054839 | ID=MS.gene93200.t1.exon1;Parent=MS.gene93200.t1 |
| chr1.3 | CDS | 16054839 | 16055088 | 16054839 | ID=cds.MS.gene93200.t1;Parent=MS.gene93200.t1 |
| chr1.3 | exon | 16056848 | 16057057 | 16056848 | ID=MS.gene93200.t1.exon2;Parent=MS.gene93200.t1 |
| chr1.3 | CDS | 16056848 | 16057057 | 16056848 | ID=cds.MS.gene93200.t1;Parent=MS.gene93200.t1 |
| Gene Sequence |
| Protein sequence |
