AlfalfaGEDB | MsG0380015115.01

M. sativa cultivar ZhongmuNo.1 / MsG0380015115.01

KEGG: K01522
GO: GO:0003824
PFAM: PF01230

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015115.01.T01	XP_024635738.1	74.138	174	9	1	5	142	7	180	6.99E-84	253

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015115.01.T01	F4KEV7	65.289	121	42	0	20	140	57	177	2.71E-55	174

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015115.01.T01	A0A396IQN5	85.106	141	16	1	2	142	17	152	2.15e-81	245

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047967.01	MsG0380015115.01	-0.846414	2.205361e-59	3.793140e-56
MsG0080048302.01	MsG0380015115.01	0.806124	9.579277e-50	5.157949e-47
MsG0080048652.01	MsG0380015115.01	0.811751	5.986846e-51	3.736598e-48
MsG0080048692.01	MsG0380015115.01	-0.831313	1.791942e-55	1.937322e-52
MsG0080048694.01	MsG0380015115.01	-0.830558	2.745450e-55	2.902523e-52
MsG0080048695.01	MsG0380015115.01	-0.830413	2.978825e-55	3.136087e-52
MsG0080048697.01	MsG0380015115.01	-0.832720	8.048866e-56	9.072617e-53
MsG0080049015.01	MsG0380015115.01	-0.804205	2.415438e-49	1.237936e-46
MsG0080049038.01	MsG0380015115.01	-0.823558	1.298413e-53	1.121744e-50
MsG0080049042.01	MsG0380015115.01	0.836477	9.147698e-57	1.154156e-53
MsG0080049066.01	MsG0380015115.01	-0.802490	5.474349e-49	2.685075e-46
MsG0080049076.01	MsG0380015115.01	-0.848594	5.548044e-60	1.023268e-56
MsG0180000367.01	MsG0380015115.01	0.806189	9.284089e-50	5.007421e-47
MsG0180000930.01	MsG0380015115.01	0.807356	5.260261e-50	2.923656e-47
MsG0180001072.01	MsG0380015115.01	-0.842047	3.282301e-58	4.915505e-55
MsG0180001079.01	MsG0380015115.01	0.800041	1.735630e-48	8.000480e-46
MsG0180001108.01	MsG0380015115.01	0.809981	1.445940e-50	8.612589e-48
MsG0180001801.01	MsG0380015115.01	0.815382	9.511509e-52	6.547764e-49
MsG0180001802.01	MsG0380015115.01	0.818132	2.298936e-52	1.706374e-49
MsG0180001925.01	MsG0380015115.01	-0.822801	1.950273e-53	1.649313e-50
MsG0180002099.01	MsG0380015115.01	-0.808113	3.631824e-50	2.058930e-47
MsG0180002214.01	MsG0380015115.01	-0.835072	2.076428e-56	2.511070e-53
MsG0180002546.01	MsG0380015115.01	-0.832638	8.432592e-56	9.481631e-53
MsG0180002935.01	MsG0380015115.01	0.833373	5.535415e-56	6.362642e-53
MsG0180003375.01	MsG0380015115.01	0.802088	6.623270e-49	3.215610e-46
MsG0180003484.01	MsG0380015115.01	0.801675	8.049064e-49	3.866965e-46
MsG0180003757.01	MsG0380015115.01	-0.829506	4.956562e-55	5.082739e-52
MsG0180003779.01	MsG0380015115.01	-0.834020	3.816213e-56	4.472103e-53
MsG0180004226.01	MsG0380015115.01	-0.817153	3.821860e-52	2.761678e-49
MsG0180004393.01	MsG0380015115.01	0.805181	1.511089e-49	7.941885e-47
MsG0180004553.01	MsG0380015115.01	-0.804282	2.328086e-49	1.195556e-46
MsG0180005417.01	MsG0380015115.01	0.802238	6.168785e-49	3.006407e-46
MsG0180005817.01	MsG0380015115.01	-0.827674	1.372999e-54	1.334559e-51
MsG0180006212.01	MsG0380015115.01	-0.822285	2.571257e-53	2.142861e-50
MsG0280006442.01	MsG0380015115.01	0.807698	4.451028e-50	2.495910e-47
MsG0280010780.01	MsG0380015115.01	-0.833521	5.084649e-56	5.870378e-53
MsG0280011299.01	MsG0380015115.01	-0.820408	6.968984e-53	5.509923e-50
MsG0280011301.01	MsG0380015115.01	-0.834449	2.977719e-56	3.535099e-53
MsG0380011635.01	MsG0380015115.01	0.821062	4.930067e-53	3.969538e-50
MsG0380011636.01	MsG0380015115.01	0.806447	8.188943e-50	4.445834e-47
MsG0380011638.01	MsG0380015115.01	0.823647	1.237678e-53	1.072056e-50
MsG0380011974.01	MsG0380015115.01	0.813833	2.094913e-51	1.382777e-48
MsG0380012281.01	MsG0380015115.01	-0.823994	1.026388e-53	8.976895e-51
MsG0380013114.01	MsG0380015115.01	-0.803024	4.247071e-49	2.111591e-46
MsG0380013272.01	MsG0380015115.01	0.803172	3.956840e-49	1.974905e-46
MsG0380013278.01	MsG0380015115.01	0.816593	5.105122e-52	3.632769e-49
MsG0380013405.01	MsG0380015115.01	0.812680	3.752980e-51	2.401468e-48
MsG0380013473.01	MsG0380015115.01	-0.811500	6.785794e-51	4.207549e-48
MsG0380013921.01	MsG0380015115.01	-0.837342	5.499117e-57	7.121849e-54
MsG0380013928.01	MsG0380015115.01	-0.833103	6.463582e-56	7.369879e-53
MsG0380013940.01	MsG0380015115.01	-0.826596	2.486995e-54	2.342731e-51
MsG0380013943.01	MsG0380015115.01	-0.826454	2.689112e-54	2.523058e-51
MsG0380013945.01	MsG0380015115.01	-0.851093	1.110806e-60	2.223121e-57
MsG0380013953.01	MsG0380015115.01	-0.844863	5.807688e-59	9.502304e-56
MsG0380013954.01	MsG0380015115.01	-0.826259	2.992571e-54	2.792218e-51
MsG0380013956.01	MsG0380015115.01	-0.850582	1.547499e-60	3.045450e-57
MsG0380013957.01	MsG0380015115.01	-0.831765	1.386592e-55	1.519569e-52
MsG0380013966.01	MsG0380015115.01	-0.824489	7.852339e-54	6.965467e-51
MsG0380013967.01	MsG0380015115.01	-0.835891	1.288224e-56	1.596844e-53
MsG0380013971.01	MsG0380015115.01	-0.847920	8.519862e-60	1.537773e-56
MsG0380013975.01	MsG0380015115.01	-0.804898	1.731827e-49	9.036957e-47
MsG0380013977.01	MsG0380015115.01	-0.836878	7.229477e-57	9.232457e-54
MsG0380013986.01	MsG0380015115.01	-0.803689	3.092657e-49	1.564177e-46
MsG0380014005.01	MsG0380015115.01	-0.839711	1.345400e-57	1.873522e-54
MsG0380014006.01	MsG0380015115.01	-0.834575	2.768488e-56	3.299211e-53
MsG0380014020.01	MsG0380015115.01	-0.823611	1.261750e-53	1.091748e-50
MsG0380014021.01	MsG0380015115.01	-0.800576	1.350652e-48	6.311103e-46
MsG0380014023.01	MsG0380015115.01	-0.814719	1.335321e-51	9.028128e-49
MsG0380014029.01	MsG0380015115.01	-0.828630	8.078709e-55	8.074892e-52
MsG0380014032.01	MsG0380015115.01	-0.856561	2.961180e-62	7.097096e-59
MsG0380014033.01	MsG0380015115.01	-0.826693	2.358284e-54	2.227746e-51
MsG0380014410.01	MsG0380015115.01	0.864669	1.029564e-64	3.259258e-61
MsG0380014735.01	MsG0380015115.01	-0.818519	1.878546e-52	1.409369e-49
MsG0380015085.01	MsG0380015115.01	0.810573	1.077943e-50	6.520963e-48
MsG0380015115.01	MsG0380015271.01	-0.815060	1.121804e-51	7.654388e-49
MsG0380015115.01	MsG0380015348.01	-0.814147	1.786720e-51	1.189435e-48
MsG0380015115.01	MsG0380015752.01	-0.829657	4.554346e-55	4.691315e-52
MsG0380015115.01	MsG0380016270.01	0.818833	1.594381e-52	1.206574e-49
MsG0380015115.01	MsG0380016476.01	0.821078	4.888547e-53	3.937813e-50
MsG0380015115.01	MsG0380016524.01	0.800245	1.577564e-48	7.309690e-46
MsG0380015115.01	MsG0380016790.01	-0.804652	1.948945e-49	1.010457e-46
MsG0380015115.01	MsG0380016835.01	-0.808058	3.731113e-50	2.112098e-47
MsG0380015115.01	MsG0380016889.01	-0.813852	2.075204e-51	1.370463e-48
MsG0380015115.01	MsG0380016931.01	-0.837018	6.658945e-57	8.539725e-54
MsG0380015115.01	MsG0380016934.01	-0.823190	1.582562e-53	1.353143e-50
MsG0380015115.01	MsG0380016935.01	-0.845163	4.820146e-59	7.961641e-56
MsG0380015115.01	MsG0380017405.01	-0.844377	7.850848e-59	1.264954e-55
MsG0380015115.01	MsG0380017406.01	-0.822526	2.259308e-53	1.895913e-50
MsG0380015115.01	MsG0380017690.01	0.814909	1.211663e-51	8.233766e-49
MsG0380015115.01	MsG0380017766.01	0.814564	1.445063e-51	9.729533e-49
MsG0380015115.01	MsG0380017962.01	-0.819842	9.390045e-53	7.308133e-50
MsG0380015115.01	MsG0380018026.01	0.837989	3.753953e-57	4.960138e-54
MsG0380015115.01	MsG0480018296.01	-0.805591	1.240019e-49	6.586120e-47
MsG0380015115.01	MsG0480018440.01	0.840396	8.920037e-58	1.268993e-54
MsG0380015115.01	MsG0480018563.01	0.828147	1.056840e-54	1.041608e-51
MsG0380015115.01	MsG0480018628.01	-0.812060	5.127339e-51	3.226714e-48
MsG0380015115.01	MsG0480019017.01	0.813097	3.040434e-51	1.967056e-48
MsG0380015115.01	MsG0480019107.01	0.808836	2.545820e-50	1.470826e-47
MsG0380015115.01	MsG0480019545.01	0.814509	1.485567e-51	9.987875e-49
MsG0380015115.01	MsG0480019726.01	0.850786	1.355652e-60	2.685954e-57
MsG0380015115.01	MsG0480019861.01	-0.808097	3.661100e-50	2.074667e-47
MsG0380015115.01	MsG0480019923.01	0.826493	2.631811e-54	2.471889e-51
MsG0380015115.01	MsG0480020722.01	0.817140	3.848579e-52	2.779971e-49
MsG0380015115.01	MsG0480020957.01	0.831381	1.724538e-55	1.868288e-52
MsG0380015115.01	MsG0480020958.01	0.806819	6.836227e-50	3.747026e-47
MsG0380015115.01	MsG0480020986.01	0.814188	1.750001e-51	1.166290e-48
MsG0380015115.01	MsG0480021001.01	0.805420	1.346704e-49	7.121370e-47
MsG0380015115.01	MsG0480021054.01	-0.801750	7.769631e-49	3.739753e-46
MsG0380015115.01	MsG0480021205.01	-0.807276	5.470881e-50	3.034445e-47
MsG0380015115.01	MsG0480021327.01	-0.832522	9.009475e-56	1.009502e-52
MsG0380015115.01	MsG0480021331.01	-0.833668	4.671609e-56	5.416961e-53
MsG0380015115.01	MsG0480021433.01	0.817487	3.214756e-52	2.344359e-49
MsG0380015115.01	MsG0480021553.01	0.811398	7.141777e-51	4.416246e-48
MsG0380015115.01	MsG0480021600.01	0.810900	9.160107e-51	5.590366e-48
MsG0380015115.01	MsG0480021912.01	-0.848814	4.820637e-60	8.955693e-57
MsG0380015115.01	MsG0480022721.01	0.818540	1.858568e-52	1.395141e-49
MsG0380015115.01	MsG0480022735.01	0.852305	5.035935e-61	1.047959e-57
MsG0380015115.01	MsG0480022765.01	-0.824451	8.014764e-54	7.101356e-51
MsG0380015115.01	MsG0480022833.01	0.812189	4.804534e-51	3.034430e-48
MsG0380015115.01	MsG0480023152.01	-0.816961	4.222553e-52	3.035438e-49
MsG0380015115.01	MsG0480023187.01	-0.806419	8.300474e-50	4.503066e-47
MsG0380015115.01	MsG0480023322.01	0.820067	8.344192e-53	6.535304e-50
MsG0380015115.01	MsG0580024309.01	-0.814800	1.280756e-51	8.678196e-49
MsG0380015115.01	MsG0580024493.01	-0.808650	2.790412e-50	1.604276e-47
MsG0380015115.01	MsG0580024678.01	-0.809256	2.070254e-50	1.209625e-47
MsG0380015115.01	MsG0580025105.01	-0.804446	2.152205e-49	1.109888e-46
MsG0380015115.01	MsG0580025117.01	0.824207	9.147976e-54	8.049554e-51
MsG0380015115.01	MsG0580025486.01	-0.805667	1.194830e-49	6.358741e-47
MsG0380015115.01	MsG0580025507.01	0.813880	2.046062e-51	1.352293e-48
MsG0380015115.01	MsG0580026162.01	0.841905	3.577514e-58	5.333711e-55
MsG0380015115.01	MsG0580027337.01	0.802144	6.449204e-49	3.135533e-46
MsG0380015115.01	MsG0580027677.01	-0.813616	2.338437e-51	1.534543e-48
MsG0380015115.01	MsG0580029555.01	0.811561	6.582745e-51	4.088020e-48
MsG0380015115.01	MsG0580030197.01	-0.824595	7.414655e-54	6.598059e-51
MsG0380015115.01	MsG0680030439.01	-0.835305	1.812711e-56	2.208165e-53
MsG0380015115.01	MsG0680030545.01	0.828550	8.445084e-55	8.421776e-52
MsG0380015115.01	MsG0680030635.01	-0.817661	2.937497e-52	2.152343e-49
MsG0380015115.01	MsG0680030961.01	0.821206	4.566008e-53	3.691093e-50
MsG0380015115.01	MsG0680031813.01	-0.847773	9.354846e-60	1.680424e-56
MsG0380015115.01	MsG0680031841.01	0.805001	1.647753e-49	8.620177e-47
MsG0380015115.01	MsG0680034229.01	-0.826243	3.018313e-54	2.815043e-51
MsG0380015115.01	MsG0680035841.01	0.857455	1.613658e-62	3.985094e-59
MsG0380015115.01	MsG0680035842.01	0.836145	1.110708e-56	1.387523e-53
MsG0380015115.01	MsG0780036064.01	-0.828930	6.837164e-55	6.893395e-52
MsG0380015115.01	MsG0780036068.01	-0.825907	3.629484e-54	3.352837e-51
MsG0380015115.01	MsG0780036370.01	0.824651	7.190558e-54	6.409121e-51
MsG0380015115.01	MsG0780037751.01	0.844839	5.894646e-59	9.637599e-56
MsG0380015115.01	MsG0780038047.01	-0.840456	8.603762e-58	1.226218e-54
MsG0380015115.01	MsG0780038197.01	-0.808654	2.785620e-50	1.601654e-47
MsG0380015115.01	MsG0780038543.01	0.805726	1.161383e-49	6.190406e-47
MsG0380015115.01	MsG0780038545.01	0.816626	5.019922e-52	3.575293e-49
MsG0380015115.01	MsG0780038924.01	0.818270	2.139993e-52	1.594369e-49
MsG0380015115.01	MsG0780039190.01	0.811703	6.130530e-51	3.821365e-48
MsG0380015115.01	MsG0780039576.01	0.811714	6.098618e-51	3.802519e-48
MsG0380015115.01	MsG0780039821.01	-0.830681	2.561281e-55	2.717872e-52
MsG0380015115.01	MsG0780039836.01	-0.809762	1.612279e-50	9.548476e-48
MsG0380015115.01	MsG0780039838.01	-0.814679	1.362243e-51	9.200197e-49
MsG0380015115.01	MsG0780039839.01	-0.818943	1.505438e-52	1.142851e-49
MsG0380015115.01	MsG0780039968.01	0.827164	1.819984e-54	1.743039e-51
MsG0380015115.01	MsG0780040121.01	-0.832704	8.122840e-56	9.151341e-53
MsG0380015115.01	MsG0780040480.01	0.837760	4.298386e-57	5.640008e-54
MsG0380015115.01	MsG0780040621.01	0.816704	4.821384e-52	3.441186e-49
MsG0380015115.01	MsG0780040878.01	0.807859	4.115111e-50	2.317186e-47
MsG0380015115.01	MsG0780040977.01	0.811590	6.488454e-51	4.032359e-48
MsG0380015115.01	MsG0780041106.01	-0.802415	5.670824e-49	2.776382e-46
MsG0380015115.01	MsG0780041173.01	-0.818558	1.841491e-52	1.382965e-49
MsG0380015115.01	MsG0780041620.01	-0.809721	1.645291e-50	9.733174e-48
MsG0380015115.01	MsG0780041720.01	-0.853956	1.695872e-61	3.728161e-58
MsG0380015115.01	MsG0780041783.01	-0.837714	4.415077e-57	5.784624e-54
MsG0380015115.01	MsG0880041855.01	-0.801020	1.096540e-48	5.182120e-46
MsG0380015115.01	MsG0880042810.01	0.852879	3.454950e-61	7.324868e-58
MsG0380015115.01	MsG0880042858.01	-0.812907	3.346816e-51	2.154406e-48
MsG0380015115.01	MsG0880043109.01	0.805856	1.090481e-49	5.831900e-47
MsG0380015115.01	MsG0880043185.01	0.809878	1.521954e-50	9.040602e-48
MsG0380015115.01	MsG0880043205.01	0.809413	1.915625e-50	1.124035e-47
MsG0380015115.01	MsG0880043261.01	0.813460	2.531374e-51	1.654211e-48
MsG0380015115.01	MsG0880043364.01	0.836720	7.929956e-57	1.007857e-53
MsG0380015115.01	MsG0880043447.01	0.819280	1.261849e-52	9.667169e-50
MsG0380015115.01	MsG0880043481.01	0.810008	1.427047e-50	8.506084e-48
MsG0380015115.01	MsG0880043824.01	0.801960	7.036550e-49	3.404993e-46
MsG0380015115.01	MsG0880043827.01	0.814658	1.377526e-51	9.297887e-49
MsG0380015115.01	MsG0880044855.01	0.801865	7.358904e-49	3.552666e-46
MsG0380015115.01	MsG0880045188.01	-0.842221	2.952461e-58	4.445921e-55
MsG0380015115.01	MsG0880045385.01	-0.815006	1.153287e-51	7.858159e-49
MsG0380015115.01	MsG0880045413.01	-0.806208	9.197981e-50	4.963467e-47
MsG0380015115.01	MsG0880045677.01	0.829707	4.427389e-55	4.567481e-52
MsG0380015115.01	MsG0880045861.01	0.807582	4.710488e-50	2.633356e-47
MsG0380015115.01	MsG0880045968.01	-0.809112	2.222261e-50	1.293491e-47
MsG0380015115.01	MsG0880046219.01	-0.826100	3.265285e-54	3.032887e-51
MsG0380015115.01	MsG0880046429.01	0.801352	9.375048e-49	4.467606e-46
MsG0380015115.01	MsG0880046469.01	-0.837091	6.378773e-57	8.197632e-54
MsG0380015115.01	MsG0880046838.01	-0.828726	7.659496e-55	7.676621e-52
MsG0380015115.01	MsG0880046863.01	0.805674	1.191198e-49	6.340445e-47
MsG0380015115.01	MsG0880047318.01	-0.839173	1.856604e-57	2.542940e-54
MsG0380015115.01	MsG0880047714.01	0.831656	1.474815e-55	1.610855e-52
MsG0280007216.01	MsG0380015115.01	0.815701	8.078508e-52	5.610095e-49
MsG0280007233.01	MsG0380015115.01	-0.809385	1.942189e-50	1.138765e-47
MsG0280007338.01	MsG0380015115.01	0.806590	7.640666e-50	4.163181e-47
MsG0280007649.01	MsG0380015115.01	-0.806014	1.010457e-49	5.425651e-47
MsG0280007650.01	MsG0380015115.01	-0.808300	3.314405e-50	1.888250e-47
MsG0280007759.01	MsG0380015115.01	0.818117	2.317509e-52	1.719426e-49
MsG0280007760.01	MsG0380015115.01	0.800683	1.284888e-48	6.019942e-46
MsG0280007786.01	MsG0380015115.01	0.831066	2.060757e-55	2.211763e-52
MsG0280007922.01	MsG0380015115.01	0.829410	5.228404e-55	5.347072e-52
MsG0280009656.01	MsG0380015115.01	0.815558	8.694871e-52	6.014420e-49
MsG0280009742.01	MsG0380015115.01	-0.826604	2.477047e-54	2.333858e-51
MsG0280009864.01	MsG0380015115.01	-0.825694	4.075961e-54	3.742459e-51
MsG0280010142.01	MsG0380015115.01	-0.829847	4.093185e-55	4.240308e-52
MsG0280010143.01	MsG0380015115.01	-0.836398	9.580613e-57	1.205881e-53
MsG0280010296.01	MsG0380015115.01	0.815426	9.303631e-52	6.412250e-49
MsG0280010410.01	MsG0380015115.01	0.815947	7.118656e-52	4.976772e-49

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015115.01.T01	MTR_3g063030	87.302	126	16	0	17	142	36	161	3.87e-79	231
MsG0380015115.01.T01	MTR_3g062950	80.451	133	21	2	11	142	37	165	7.25e-72	213
MsG0380015115.01.T01	MTR_3g062940	70.588	119	35	0	24	142	78	196	1.33e-49	157

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015115.01.T01	AT5G58240	64.516	124	44	17	140	2	125	1.07e-56	173
MsG0380015115.01.T01	AT5G58240	65.289	121	42	20	140	37	157	2.18e-56	173
MsG0380015115.01.T01	AT5G58240	65.289	121	42	20	140	57	177	2.76e-56	174

Find 19 sgRNAs with CRISPR-Local

Find 89 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TAGTTGTTTATTTACCTTAA+TGG	0.217298	3:-65414399	None:intergenic
ATGATGAGAACATTGATTTA+TGG	0.249450	3:+65415674	MsG0380015115.01.T01:CDS
CCTCTTGTGCCATTTCTTCA+AGG	0.271826	3:-65416191	None:intergenic
CAATGATGACATTTATGATT+TGG	0.306333	3:+65416001	MsG0380015115.01.T01:CDS
CTCCTCTACTCACTCCATTA+AGG	0.313058	3:+65414385	MsG0380015115.01.T01:CDS
TGGATTTAGAGAGGAAAGAT+AGG	0.366670	3:+65416166	MsG0380015115.01.T01:CDS
AGATAGGAGCCTTGAAGAAA+TGG	0.398545	3:+65416182	MsG0380015115.01.T01:CDS
ACACGCTTCACTTCGCGCTT+CGG	0.426783	3:-65415637	None:intergenic
ATGTAAGTGATGATGCATTA+TGG	0.441950	3:-65415735	None:intergenic
AACCAGGATGGACCTCAAGC+TGG	0.511868	3:+65415918	MsG0380015115.01.T01:intron
TTGTTCTTGTATACACATCA+AGG	0.538035	3:+65414351	MsG0380015115.01.T01:CDS
TTCATATCCATATACTTCCT+CGG	0.540594	3:+65415958	MsG0380015115.01.T01:CDS
CCTTGAAGAAATGGCACAAG+AGG	0.544026	3:+65416191	MsG0380015115.01.T01:CDS
TGGCGCATAGCACATAAACT+TGG	0.555803	3:+65415694	MsG0380015115.01.T01:CDS
TACCTTAATGGAGTGAGTAG+AGG	0.565031	3:-65414387	None:intergenic
GGAACTGATTGTCCAGCTTG+AGG	0.613109	3:-65415930	None:intergenic
GTTGAAAAGTAAGCTAGCTG+TGG	0.621405	3:+65416146	MsG0380015115.01.T01:CDS
AGCTAGCTGTGGATTTAGAG+AGG	0.624532	3:+65416157	MsG0380015115.01.T01:CDS
AGTATATGGATATGAACATG+AGG	0.648556	3:-65415951	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAAAAATTCCTAAAATATTT+AGG	-	Chr3:65414910-65414929	None:intergenic	10.0%
!!	AAAGAAAAAAATTATTGTGA+GGG	+	Chr3:65415240-65415259	MsG0380015115.01.T01:intron	15.0%
!!	CTAAAAATCAAGTAAAAATT+TGG	+	Chr3:65416074-65416093	MsG0380015115.01.T01:intron	15.0%
!!!	AAAAAATGCCTAAATATTTT+AGG	+	Chr3:65414899-65414918	MsG0380015115.01.T01:intron	15.0%
!!!	AGATTAATGTTACTTTTATT+GGG	+	Chr3:65414469-65414488	MsG0380015115.01.T01:intron	15.0%
!!!	CATTTGTGTTTTTAATAATT+TGG	+	Chr3:65416034-65416053	MsG0380015115.01.T01:intron	15.0%
!!!	TATTGTTATTTGAGTATATA+AGG	+	Chr3:65415787-65415806	MsG0380015115.01.T01:intron	15.0%
!!	AGTAACATTAATCTCATATA+TGG	-	Chr3:65414463-65414482	None:intergenic	20.0%
!!	GAAAGAAAAAAATTATTGTG+AGG	+	Chr3:65415239-65415258	MsG0380015115.01.T01:intron	20.0%
!!	GTTAATCTATCGTTATAATA+TGG	+	Chr3:65414984-65415003	MsG0380015115.01.T01:intron	20.0%
!!	TAGTTGTTTATTTACCTTAA+TGG	-	Chr3:65414402-65414421	None:intergenic	20.0%
!!	TTATTAACATCACACTAATA+AGG	-	Chr3:65414719-65414738	None:intergenic	20.0%
!!	TTTCTTTCTTTATAAACTAG+AGG	-	Chr3:65415227-65415246	None:intergenic	20.0%
!!!	AAGTTAACATTTGATGATTA+TGG	-	Chr3:65414426-65414445	None:intergenic	20.0%
!!!	ATTAATGTTACTTTTATTGG+GGG	+	Chr3:65414471-65414490	MsG0380015115.01.T01:intron	20.0%
!!!	ATTTTGTTAGAAATTTGTCT+GGG	+	Chr3:65415406-65415425	MsG0380015115.01.T01:intron	20.0%
!!!	CTTTTAATGTAGAGTATATA+AGG	+	Chr3:65415815-65415834	MsG0380015115.01.T01:intron	20.0%
!!!	GAGATTAATGTTACTTTTAT+TGG	+	Chr3:65414468-65414487	MsG0380015115.01.T01:intron	20.0%
!!!	GATTAATGTTACTTTTATTG+GGG	+	Chr3:65414470-65414489	MsG0380015115.01.T01:intron	20.0%
!	AAAAGATAGCATCTCAATAT+AGG	+	Chr3:65415312-65415331	MsG0380015115.01.T01:intron	25.0%
!	AATGTAAACATGAATCTACT+TGG	+	Chr3:65415555-65415574	MsG0380015115.01.T01:intron	25.0%
!	ATGGAACATAGTAATACATA+GGG	+	Chr3:65414953-65414972	MsG0380015115.01.T01:intron	25.0%
!	ATTCTTCAAATTGTCTTACT+TGG	-	Chr3:65415768-65415787	None:intergenic	25.0%
!	CAATGATGACATTTATGATT+TGG	+	Chr3:65416001-65416020	MsG0380015115.01.T01:CDS	25.0%
!	GAGATTTAGATTTAGAGATA+TGG	+	Chr3:65414934-65414953	MsG0380015115.01.T01:intron	25.0%
!	TATGGAACATAGTAATACAT+AGG	+	Chr3:65414952-65414971	MsG0380015115.01.T01:intron	25.0%
!	TCAAAACCTTAATATCATCA+CGG	+	Chr3:65415503-65415522	MsG0380015115.01.T01:intron	25.0%
!!	CATTTTGTTAGAAATTTGTC+TGG	+	Chr3:65415405-65415424	MsG0380015115.01.T01:intron	25.0%
!!!	ATGATGAGAACATTGATTTA+TGG	+	Chr3:65415674-65415693	MsG0380015115.01.T01:CDS	25.0%
	ACAAAACAAGTGCTTAAAAG+TGG	-	Chr3:65415196-65415215	None:intergenic	30.0%
	ACAACAACATTTGATATGTC+CGG	+	Chr3:65415049-65415068	MsG0380015115.01.T01:intron	30.0%
	AGTAATACATAGGGTAGTAA+TGG	+	Chr3:65414962-65414981	MsG0380015115.01.T01:intron	30.0%
	AGTATATGGATATGAACATG+AGG	-	Chr3:65415954-65415973	None:intergenic	30.0%
	ATATGAGCAATAGATCAAAG+AGG	-	Chr3:65414633-65414652	None:intergenic	30.0%
	ATGACCTGCAAAAGATAAAA+AGG	-	Chr3:65414694-65414713	None:intergenic	30.0%
	ATTGTATAGCCATATAGCAT+TGG	-	Chr3:65415869-65415888	None:intergenic	30.0%
	GCAGATAAATGAAAAAGAGA+AGG	+	Chr3:65416122-65416141	MsG0380015115.01.T01:intron	30.0%
	GCTGTATTTGTAATCACATA+AGG	+	Chr3:65415468-65415487	MsG0380015115.01.T01:intron	30.0%
	TTCATATCCATATACTTCCT+CGG	+	Chr3:65415958-65415977	MsG0380015115.01.T01:CDS	30.0%
	TTGTATGAAACACTGAACTA+TGG	-	Chr3:65414549-65414568	None:intergenic	30.0%
	TTGTTCTTGTATACACATCA+AGG	+	Chr3:65414351-65414370	MsG0380015115.01.T01:CDS	30.0%
	TTTGTAATCACATAAGGCTA+TGG	+	Chr3:65415474-65415493	MsG0380015115.01.T01:intron	30.0%
!	AATTGACACACTCTTTTGTT+AGG	+	Chr3:65415266-65415285	MsG0380015115.01.T01:intron	30.0%
!	ATGTAAGTGATGATGCATTA+TGG	-	Chr3:65415738-65415757	None:intergenic	30.0%
!	CTTTCCTTTTTATCTTTTGC+AGG	+	Chr3:65414687-65414706	MsG0380015115.01.T01:intron	30.0%
!	GCTGTAGAATACTATGATTT+TGG	+	Chr3:65414508-65414527	MsG0380015115.01.T01:intron	30.0%
!!	ACATTTATGATTTGGTAGGA+TGG	+	Chr3:65416009-65416028	MsG0380015115.01.T01:intron	30.0%
!!	GATGACATTTATGATTTGGT+AGG	+	Chr3:65416005-65416024	MsG0380015115.01.T01:intron	30.0%
!!!	AGATGCTATCTTTTGAGTTT+GGG	-	Chr3:65415306-65415325	None:intergenic	30.0%
!!!	TTTTAAGCACTTGTTTTGTG+AGG	+	Chr3:65415197-65415216	MsG0380015115.01.T01:intron	30.0%
	ACACAACAAGTGCTTAAAAG+AGG	-	Chr3:65415099-65415118	None:intergenic	35.0%
	ACAGTAATCACTAACCAATG+TGG	-	Chr3:65415382-65415401	None:intergenic	35.0%
	AGCATGTTCAAATCAACAAC+CGG	-	Chr3:65415071-65415090	None:intergenic	35.0%
	ATGGTAAATGTATGTCTCGT+AGG	+	Chr3:65415003-65415022	MsG0380015115.01.T01:intron	35.0%
	CAAATCAATCTTTCTGAACC+AGG	+	Chr3:65415902-65415921	MsG0380015115.01.T01:intron	35.0%
	CATATACTTCCTCGGAAAAA+CGG	+	Chr3:65415966-65415985	MsG0380015115.01.T01:CDS	35.0%
	CTGGTTCAGAAAGATTGATT+TGG	-	Chr3:65415904-65415923	None:intergenic	35.0%
	GACAAAGGCAAAAGAAAGAT+CGG	-	Chr3:65414572-65414591	None:intergenic	35.0%
	GCTTCATCATATAACCACAT+TGG	+	Chr3:65415365-65415384	MsG0380015115.01.T01:intron	35.0%
	TATGAAACACTGAACTATGG+TGG	-	Chr3:65414546-65414565	None:intergenic	35.0%
	TGGATTTAGAGAGGAAAGAT+AGG	+	Chr3:65416166-65416185	MsG0380015115.01.T01:CDS	35.0%
	TTGTAGCCGTGATGATATTA+AGG	-	Chr3:65415512-65415531	None:intergenic	35.0%
!	ATTGGGGGTGTAAATAAAGA+TGG	+	Chr3:65414486-65414505	MsG0380015115.01.T01:intron	35.0%
!!!	GAGATGCTATCTTTTGAGTT+TGG	-	Chr3:65415307-65415326	None:intergenic	35.0%
!!!	TTTTAAGCACTTGTTGTGTG+AGG	+	Chr3:65415100-65415119	MsG0380015115.01.T01:intron	35.0%
	AGATAGGAGCCTTGAAGAAA+TGG	+	Chr3:65416182-65416201	MsG0380015115.01.T01:CDS	40.0%
	AGCAATAGATCAAAGAGGTG+AGG	-	Chr3:65414628-65414647	None:intergenic	40.0%
	GCAATAGATCAAAGAGGTGA+GGG	-	Chr3:65414627-65414646	None:intergenic	40.0%
	GCTTAAAAGTGGAGAATAGC+AGG	-	Chr3:65415185-65415204	None:intergenic	40.0%
	GTTGAAAAGTAAGCTAGCTG+TGG	+	Chr3:65416146-65416165	MsG0380015115.01.T01:CDS	40.0%
	TACCTTAATGGAGTGAGTAG+AGG	-	Chr3:65414390-65414409	None:intergenic	40.0%
	TCAATCTTTCTGAACCAGGA+TGG	+	Chr3:65415906-65415925	MsG0380015115.01.T01:intron	40.0%
	TGCCTAAGACCAATGCTATA+TGG	+	Chr3:65415857-65415876	MsG0380015115.01.T01:intron	40.0%
!!	AGCCATATAGCATTGGTCTT+AGG	-	Chr3:65415862-65415881	None:intergenic	40.0%
!!	CGTTTTTCCGAGGAAGTATA+TGG	-	Chr3:65415968-65415987	None:intergenic	40.0%
	AGCTAGCTGTGGATTTAGAG+AGG	+	Chr3:65416157-65416176	MsG0380015115.01.T01:CDS	45.0%
	CCTTGAAGAAATGGCACAAG+AGG	+	Chr3:65416191-65416210	MsG0380015115.01.T01:CDS	45.0%
	CTCCTCTACTCACTCCATTA+AGG	+	Chr3:65414385-65414404	MsG0380015115.01.T01:CDS	45.0%
	TGGCGCATAGCACATAAACT+TGG	+	Chr3:65415694-65415713	MsG0380015115.01.T01:CDS	45.0%
!!	CCTCTTGTGCCATTTCTTCA+AGG	-	Chr3:65416194-65416213	None:intergenic	45.0%
!!	TCGAAATCACCGTTTTTCCG+AGG	-	Chr3:65415978-65415997	None:intergenic	45.0%
	AGCAAGATACCAGTGACAGC+AGG	-	Chr3:65414604-65414623	None:intergenic	50.0%
	GGAACTGATTGTCCAGCTTG+AGG	-	Chr3:65415933-65415952	None:intergenic	50.0%
	AACCAGGATGGACCTCAAGC+TGG	+	Chr3:65415918-65415937	MsG0380015115.01.T01:intron	55.0%
	ACACGCTTCACTTCGCGCTT+CGG	-	Chr3:65415640-65415659	None:intergenic	55.0%
!	AGCAGGACGCAGGTTGACAA+AGG	-	Chr3:65414587-65414606	None:intergenic	55.0%
	AACCTGCGTCCTGCTGTCAC+TGG	+	Chr3:65414592-65414611	MsG0380015115.01.T01:intron	60.0%
	GTCCAGCTTGAGGTCCATCC+TGG	-	Chr3:65415923-65415942	None:intergenic	60.0%
	TACCAGTGACAGCAGGACGC+AGG	-	Chr3:65414597-65414616	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	65414344	65416242	65414344	ID=MsG0380015115.01;Name=MsG0380015115.01
Chr3	mRNA	65414344	65416242	65414344	ID=MsG0380015115.01.T01;Parent=MsG0380015115.01;Name=MsG0380015115.01.T01;_AED=0.48;_eAED=0.49;_QI=0\|0\|0\|1\|0\|0\|4\|0\|142
Chr3	exon	65414344	65414406	65414344	ID=MsG0380015115.01.T01:exon:22756;Parent=MsG0380015115.01.T01
Chr3	exon	65415619	65415768	65415619	ID=MsG0380015115.01.T01:exon:22757;Parent=MsG0380015115.01.T01
Chr3	exon	65415924	65416022	65415924	ID=MsG0380015115.01.T01:exon:22758;Parent=MsG0380015115.01.T01
Chr3	exon	65416126	65416242	65416126	ID=MsG0380015115.01.T01:exon:22759;Parent=MsG0380015115.01.T01
Chr3	CDS	65414344	65414406	65414344	ID=MsG0380015115.01.T01:cds;Parent=MsG0380015115.01.T01
Chr3	CDS	65415619	65415768	65415619	ID=MsG0380015115.01.T01:cds;Parent=MsG0380015115.01.T01
Chr3	CDS	65415924	65416022	65415924	ID=MsG0380015115.01.T01:cds;Parent=MsG0380015115.01.T01
Chr3	CDS	65416126	65416242	65416126	ID=MsG0380015115.01.T01:cds;Parent=MsG0380015115.01.T01

Gene Sequence

>MsG0380015115.01.T01

CTACTGATTGTTCTTGTATACACATCAAGGAGCATTATTATCTCCTCTACTCACTCCATTAAGCTACATGTTCTAATCTGTCCGAAGCGCGAAGTGAAGCGTGTTGCTGATCTTACTGATGATGAGAACATTGATTTATGGCGCATAGCACATAAACTTGGTAGACAACTTGAGAGCTACCATAATGCATCATCACTTACATTTTGTATCCAAGATGGACCTCAAGCTGGACAATCAGTTCCTCATGTTCATATCCATATACTTCCTCGGAAAAACGGTGATTTCGAAAACAATGATGACATTTATGATTTGATAAATGAAAAAGAGAAGGAGTTGAAAAGTAAGCTAGCTGTGGATTTAGAGAGGAAAGATAGGAGCCTTGAAGAAATGGCACAAGAGGCTGATGAATACAGAAAATTTGTCCTTTGA

Protein sequence

>MsG0380015115.01.T01

LLIVLVYTSRSIIISSTHSIKLHVLICPKREVKRVADLTDDENIDLWRIAHKLGRQLESYHNASSLTFCIQDGPQAGQSVPHVHIHILPRKNGDFENNDDIYDLINEKEKELKSKLAVDLERKDRSLEEMAQEADEYRKFVL*