AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005839.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005839.01.T01 MTR_1g107555 97.590 581 12 1 1 581 1 579 0.0 1172
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005839.01.T01 AT1G71040 68.190 569 176 2 16 580 13 580 0.0 819
MsG0180005839.01.T01 AT1G23010 66.786 557 182 2 26 580 25 580 0.0 801

Find 169 sgRNAs with CRISPR-Local

Find 329 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCCAGGGTGTTGATTATT+TGG 0.126666 1:+96768138 None:intergenic
AACCTTCTAGCTGGTTTAAT+TGG 0.134764 1:-96768075 MsG0180005839.01.T01:CDS
TTTGGGTTTGTTTAAGGTTT+TGG 0.157715 1:-96767284 MsG0180005839.01.T01:CDS
TATTCATTTGGGTTTGTTTA+AGG 0.162430 1:-96767290 MsG0180005839.01.T01:CDS
GGTGAAATCTGATGAATTTA+AGG 0.174317 1:-96767248 MsG0180005839.01.T01:CDS
GCATCTGATTCTGCTTATAT+TGG 0.236168 1:-96767736 MsG0180005839.01.T01:CDS
AGTATTATAAAGAGAGAAAA+AGG 0.240570 1:+96770932 None:intergenic
GAACTTGTATTGTAGGAAAA+TGG 0.248707 1:-96766713 MsG0180005839.01.T01:intron
CCATAGACTTTGGGCATATT+AGG 0.248841 1:+96770733 None:intergenic
TTTGGATTTCCATCGCTTTC+GGG 0.251781 1:+96768225 None:intergenic
ATCAACACCCTGGAAATTTA+TGG 0.253088 1:-96768131 MsG0180005839.01.T01:CDS
GTTTGGATTTCCATCGCTTT+CGG 0.285243 1:+96768224 None:intergenic
CAGTGGCAACCAGAATATTT+TGG 0.298569 1:-96767898 MsG0180005839.01.T01:CDS
GGGAATACCATTGGTTGTTT+TGG 0.306936 1:+96768281 None:intergenic
TTCCACCCTTTCTCATAATC+AGG 0.308245 1:+96767151 None:intergenic
TCACCCACTTCATATTCATT+TGG 0.316177 1:-96767302 MsG0180005839.01.T01:CDS
ATTGCGTCACCAAAATATTC+TGG 0.317816 1:+96767889 None:intergenic
CCATTGAGGGCTTCGATTGT+TGG 0.320385 1:+96768387 None:intergenic
CCTAATATGCCCAAAGTCTA+TGG 0.326346 1:-96770733 MsG0180005839.01.T01:CDS
TTATCATTGTTGACTCTCAT+TGG 0.342861 1:+96766851 None:intergenic
TTTGGGTTCTTGTAATATAG+TGG 0.343682 1:-96766478 MsG0180005839.01.T01:three_prime_UTR
CACCCACTTCATATTCATTT+GGG 0.348020 1:-96767301 MsG0180005839.01.T01:CDS
ATCTTGAGAGACTTTGATTT+GGG 0.361911 1:+96770688 None:intergenic
TTGGCATGTTCAAGAAGAAA+TGG 0.363926 1:-96770666 MsG0180005839.01.T01:CDS
AATCTTGAGAGACTTTGATT+TGG 0.364281 1:+96770687 None:intergenic
GTTTAATCCGTATGCATAAA+CGG 0.367333 1:+96768434 None:intergenic
ACCTTGTAGCCATAGACTTT+GGG 0.371381 1:+96770724 None:intergenic
CATCTGATTCTGCTTATATT+GGG 0.380154 1:-96767735 MsG0180005839.01.T01:CDS
ACCTTCTAGCTGGTTTAATT+GGG 0.385462 1:-96768074 MsG0180005839.01.T01:CDS
GTCAATGAAGTGGGGATAGT+TGG 0.385690 1:+96768303 None:intergenic
TTACCACTAGTTTCATCAAC+TGG 0.391577 1:+96767580 None:intergenic
TCATGATACCATAAATTTCC+AGG 0.392964 1:+96768123 None:intergenic
ACTTTCGCAATTTCTGTAAC+CGG 0.395052 1:+96767370 None:intergenic
AACCTTGTAGCCATAGACTT+TGG 0.396598 1:+96770723 None:intergenic
TCCCATGGGAGTATGTGATT+TGG 0.396819 1:+96768327 None:intergenic
TCATCATAGCATTATCTTCA+TGG 0.397950 1:+96766904 None:intergenic
TTGTTACAAAGATTGTTGTT+AGG 0.409385 1:-96767102 MsG0180005839.01.T01:CDS
GCGTTCAAATACAAATGAAT+TGG 0.410190 1:+96767409 None:intergenic
AAACACAAAGCAACAATTCC+TGG 0.410216 1:-96768411 MsG0180005839.01.T01:CDS
AGAGTTTCATTACTTGCAAC+TGG 0.413376 1:+96767709 None:intergenic
TTCATGTGTAAGTAAATAAG+AGG 0.416016 1:+96766137 None:intergenic
TCCATCGCTACCTTGTTGTA+AGG 0.419561 1:+96770895 None:intergenic
TCTGTAACCGGTGCTTCATA+AGG 0.422607 1:+96767382 None:intergenic
AGTTGACACGTCACGGATAC+CGG 0.424090 1:-96767524 MsG0180005839.01.T01:CDS
CTATGAGAATTGATATTGCT+TGG 0.425110 1:-96766434 MsG0180005839.01.T01:three_prime_UTR
CACCGCTGGATTCAAAATCA+AGG 0.425944 1:-96768193 MsG0180005839.01.T01:CDS
CAGTGAGAACTCAAAACAAT+AGG 0.426583 1:+96770964 None:intergenic
GTGGGGATAGTTGGGTCCCA+TGG 0.428785 1:+96768312 None:intergenic
AGAGTCAACAATGATAATAT+AGG 0.429928 1:-96766845 MsG0180005839.01.T01:intron
GCTTCACTTGATCATCTTCA+AGG 0.430685 1:+96766878 None:intergenic
AAGGTTCCTGATTATGAGAA+AGG 0.437090 1:-96767157 MsG0180005839.01.T01:CDS
TCCCAATTAAACCAGCTAGA+AGG 0.444099 1:+96768073 None:intergenic
TATGGCTACAAGGTTGTAGA+TGG 0.446660 1:-96770715 MsG0180005839.01.T01:CDS
GGTGACGCAATCATTGTAAA+CGG 0.446969 1:-96767877 MsG0180005839.01.T01:CDS
TTTAGTGGTGATTCGATTGA+AGG 0.452301 1:+96768033 None:intergenic
TTTGATGCAACTAAGGAGTC+TGG 0.460440 1:-96767046 MsG0180005839.01.T01:CDS
TCATAATTTGTCTAAAATTG+TGG 0.469765 1:-96766569 MsG0180005839.01.T01:three_prime_UTR
AAATCAAAGTCTCTCAAGAT+TGG 0.470978 1:-96770685 MsG0180005839.01.T01:CDS
GACGTGTCAACTTCTTTATC+CGG 0.473491 1:+96767535 None:intergenic
ACACTTGATAAATCAACAAC+CGG 0.475934 1:+96767484 None:intergenic
CATCAACTGGATCACCGGTT+GGG 0.476683 1:+96767593 None:intergenic
ATGGTATCATGATCATGCTA+TGG 0.476987 1:-96768112 MsG0180005839.01.T01:CDS
GTGTGTGGAGATTCCATTGA+GGG 0.480167 1:+96768374 None:intergenic
TATGCATAAACGGTCGTTGG+TGG 0.481019 1:+96768444 None:intergenic
ACCAGAGTCAACCTTCTAGC+TGG 0.484469 1:-96768084 MsG0180005839.01.T01:CDS
ACTGGATCACCGGTTGGGTA+AGG 0.488939 1:+96767598 None:intergenic
GGATTTAGTAAGTTTGGCTG+TGG 0.489022 1:-96766182 MsG0180005839.01.T01:three_prime_UTR
TGGTATCATGATCATGCTAT+GGG 0.489530 1:-96768111 MsG0180005839.01.T01:CDS
GGAAAAGCTTGTGGAATATC+CGG 0.491144 1:-96767503 MsG0180005839.01.T01:CDS
CGTGTGTAGAGAAGTTGATC+AGG 0.495459 1:-96766271 MsG0180005839.01.T01:three_prime_UTR
TGAAGGGTCGCGAATGATGT+AGG 0.499265 1:+96768050 None:intergenic
TCAATGAAGTGGGGATAGTT+GGG 0.499761 1:+96768304 None:intergenic
ATTCGATCGTAGCTTTAAAA+CGG 0.500286 1:-96767971 MsG0180005839.01.T01:CDS
TTGATATTGCTTGGAATAGA+CGG 0.502899 1:-96766425 MsG0180005839.01.T01:three_prime_UTR
CCAACAATCGAAGCCCTCAA+TGG 0.506441 1:-96768387 MsG0180005839.01.T01:CDS
ATACATACCAATGCAACGTA+TGG 0.508861 1:-96767070 MsG0180005839.01.T01:CDS
CTGATTCTGCAATCTTCAGA+AGG 0.509527 1:-96766380 MsG0180005839.01.T01:three_prime_UTR
CCAACGACCGTTTATGCATA+CGG 0.510709 1:-96768441 MsG0180005839.01.T01:CDS
GCAGCTTATCCTTACCCAAC+CGG 0.511134 1:-96767607 MsG0180005839.01.T01:CDS
CATGGGAGTATGTGATTTGG+AGG 0.511892 1:+96768330 None:intergenic
TGGCATGTTCAAGAAGAAAT+GGG 0.517657 1:-96770665 MsG0180005839.01.T01:intron
GCAAGTAATGAAACTCTTGT+GGG 0.524749 1:-96767703 MsG0180005839.01.T01:CDS
TGGGGATAGTTGGGTCCCAT+GGG 0.525794 1:+96768313 None:intergenic
GGTTACAGAAATTGCGAAAG+TGG 0.529348 1:-96767368 MsG0180005839.01.T01:CDS
AGCAAAGCTACACAGTTCAT+AGG 0.530126 1:-96766640 MsG0180005839.01.T01:three_prime_UTR
CTCCAAATCACATACTCCCA+TGG 0.532484 1:-96768329 MsG0180005839.01.T01:CDS
ATCAACAAACATCTTCAGCT+TGG 0.534688 1:+96770762 None:intergenic
TCATCAACTGGATCACCGGT+TGG 0.535108 1:+96767592 None:intergenic
TGCACGTGGGAAGAAAGTTA+AGG 0.536279 1:-96767176 MsG0180005839.01.T01:CDS
ATCGCTACCTTGTTGTAAGG+TGG 0.536844 1:+96770898 None:intergenic
AGTTTCATCAACTGGATCAC+CGG 0.536991 1:+96767588 None:intergenic
ATCAAACCCATACGTTGCAT+TGG 0.538238 1:+96767063 None:intergenic
TGATGATGATGATGTTGATA+AGG 0.538988 1:+96770816 None:intergenic
GTATGGGTTTGATGCAACTA+AGG 0.543489 1:-96767053 MsG0180005839.01.T01:CDS
AACTACAGTGGGAATACCAT+TGG 0.548211 1:+96768272 None:intergenic
TTCTAAACACCATTCGTCAA+GGG 0.549756 1:-96766310 MsG0180005839.01.T01:three_prime_UTR
TCTAAACACCATTCGTCAAG+GGG 0.549913 1:-96766309 MsG0180005839.01.T01:three_prime_UTR
AGGTTCCTGATTATGAGAAA+GGG 0.549939 1:-96767156 MsG0180005839.01.T01:CDS
TGCAAGTAATGAAACTCTTG+TGG 0.550675 1:-96767704 MsG0180005839.01.T01:CDS
AATCACATACCACACCTCAC+TGG 0.559642 1:+96767342 None:intergenic
AGTTGATGAAACTAGTGGTA+AGG 0.560599 1:-96767578 MsG0180005839.01.T01:CDS
CGCGAAACCTTATGAAGCAC+CGG 0.561477 1:-96767389 MsG0180005839.01.T01:CDS
GCCCAAAGTCTATGGCTACA+AGG 0.562188 1:-96770725 MsG0180005839.01.T01:CDS
ACCTTACAACAAGGTAGCGA+TGG 0.562883 1:-96770896 MsG0180005839.01.T01:exon
AATGTGTTTAAGATGAGACC+TGG 0.563487 1:-96767127 MsG0180005839.01.T01:CDS
AGGGCTTCGATTGTTGGACC+AGG 0.563868 1:+96768393 None:intergenic
TCATTGTAAACGGTAAAGCT+TGG 0.568812 1:-96767867 MsG0180005839.01.T01:CDS
AAACCCAAATGAATATGAAG+TGG 0.568961 1:+96767298 None:intergenic
ACCGCTGGATTCAAAATCAA+GGG 0.573346 1:-96768192 MsG0180005839.01.T01:CDS
ACGGATACCGGAAAAGCTTG+TGG 0.573498 1:-96767512 MsG0180005839.01.T01:CDS
GTTACAGAAATTGCGAAAGT+GGG 0.575845 1:-96767367 MsG0180005839.01.T01:CDS
TTAGTGGTGATTCGATTGAA+GGG 0.576663 1:+96768034 None:intergenic
CCGTATGCATAAACGGTCGT+TGG 0.580393 1:+96768441 None:intergenic
AGACTTTGGGCATATTAGGA+AGG 0.581208 1:+96770737 None:intergenic
ATTCATGAACCCGAAAGCGA+TGG 0.581864 1:-96768234 MsG0180005839.01.T01:CDS
CTTCACTTGATCATCTTCAA+GGG 0.582949 1:+96766879 None:intergenic
TACATACCAATGCAACGTAT+GGG 0.583012 1:-96767069 MsG0180005839.01.T01:CDS
TATCAAGTGTGACGCGCACA+CGG 0.586422 1:-96767471 MsG0180005839.01.T01:CDS
TCCAAATCACATACTCCCAT+GGG 0.586864 1:-96768328 MsG0180005839.01.T01:CDS
TCAAAATCAAGGGACCCACT+TGG 0.588153 1:-96768182 MsG0180005839.01.T01:CDS
CATGATACCATAAATTTCCA+GGG 0.588834 1:+96768124 None:intergenic
CTCAAATCCACCTTACAACA+AGG 0.591768 1:-96770905 MsG0180005839.01.T01:five_prime_UTR
GGAGTATGTGATTTGGAGGG+AGG 0.593250 1:+96768334 None:intergenic
ATAACGTCTGTGATCTCAGA+TGG 0.593919 1:+96767679 None:intergenic
ACCAGCTAGAAGGTTGACTC+TGG 0.595575 1:+96768083 None:intergenic
TTCCTGATTATGAGAAAGGG+TGG 0.596715 1:-96767153 MsG0180005839.01.T01:CDS
ATTCTAAACACCATTCGTCA+AGG 0.599748 1:-96766311 MsG0180005839.01.T01:three_prime_UTR
TGATTCTGCAATCTTCAGAA+GGG 0.604374 1:-96766379 MsG0180005839.01.T01:three_prime_UTR
ATAAAGAAGTTGACACGTCA+CGG 0.605318 1:-96767531 MsG0180005839.01.T01:CDS
TCATTGACCAAAACAACCAA+TGG 0.609702 1:-96768288 MsG0180005839.01.T01:CDS
GCTACTTTCTTGTAAACACT+CGG 0.610756 1:-96766664 MsG0180005839.01.T01:three_prime_UTR
CACGTGGATGAGCATGCACG+TGG 0.614681 1:-96767190 MsG0180005839.01.T01:CDS
CCGTGGAGATGAACTACAGT+GGG 0.615840 1:+96768261 None:intergenic
GAATCTCCACACACGTGACG+TGG 0.619087 1:-96768365 MsG0180005839.01.T01:CDS
GATCGTAGCTTTAAAACGGA+CGG 0.621074 1:-96767967 MsG0180005839.01.T01:CDS
ATGTGTTTAAGATGAGACCT+GGG 0.622195 1:-96767126 MsG0180005839.01.T01:CDS
TGAATGAGAGCAAATTTGTG+AGG 0.624348 1:+96766343 None:intergenic
ACAATCTTTGTAACAAACCC+AGG 0.627391 1:+96767109 None:intergenic
AACCCAAATGAATATGAAGT+GGG 0.627966 1:+96767299 None:intergenic
AAAATGGCATACATATGATG+TGG 0.628527 1:-96766697 MsG0180005839.01.T01:three_prime_UTR
CCCACTGTAGTTCATCTCCA+CGG 0.633373 1:-96768261 MsG0180005839.01.T01:CDS
TATCCAAATAATCAACACCC+TGG 0.637082 1:-96768141 MsG0180005839.01.T01:CDS
TCATGTGTAAGTAAATAAGA+GGG 0.637658 1:+96766138 None:intergenic
AAATATTCTGGTTGCCACTG+TGG 0.640257 1:+96767901 None:intergenic
TGCCACTGTGGATGAATCGA+AGG 0.640534 1:+96767913 None:intergenic
CACGTGCATGCTCATCCACG+TGG 0.643363 1:+96767191 None:intergenic
GTGTAGAGAAGTTGATCAGG+TGG 0.647825 1:-96766268 MsG0180005839.01.T01:three_prime_UTR
AAGTGGGGTCCAGTGAGGTG+TGG 0.652065 1:-96767351 MsG0180005839.01.T01:CDS
TGGTTTAAGATTTGTACACG+TGG 0.655271 1:-96767758 MsG0180005839.01.T01:CDS
GATCCAGTTGATGAAACTAG+TGG 0.655275 1:-96767583 MsG0180005839.01.T01:CDS
ATGGGAGTATGTGATTTGGA+GGG 0.660776 1:+96768331 None:intergenic
AAGTAAATATATGCATACAC+AGG 0.662969 1:-96766600 MsG0180005839.01.T01:three_prime_UTR
TTACAGAAATTGCGAAAGTG+GGG 0.671324 1:-96767366 MsG0180005839.01.T01:CDS
CGTGTGTGGAGATTCCATTG+AGG 0.674486 1:+96768373 None:intergenic
TGCGAAAGTGGGGTCCAGTG+AGG 0.677654 1:-96767356 MsG0180005839.01.T01:CDS
CTACGATCGAATAACATCAA+CGG 0.684384 1:+96767982 None:intergenic
TAAACACCATTCGTCAAGGG+GGG 0.690000 1:-96766307 MsG0180005839.01.T01:three_prime_UTR
CTAAACACCATTCGTCAAGG+GGG 0.692297 1:-96766308 MsG0180005839.01.T01:three_prime_UTR
AAATCAAATTCGTTACCGTG+TGG 0.693586 1:+96768006 None:intergenic
CGGGTTCATGAATTCCACCG+TGG 0.697997 1:+96768244 None:intergenic
CAAGTAATGAAACTCTTGTG+GGG 0.698780 1:-96767702 MsG0180005839.01.T01:CDS
CGACGTCGTACAGTTAAACG+TGG 0.705658 1:+96767844 None:intergenic
ACCGTGGAGATGAACTACAG+TGG 0.716142 1:+96768260 None:intergenic
TCACCACTAAAATTACCACA+CGG 0.733048 1:-96768021 MsG0180005839.01.T01:CDS
ATCCTTCGATTCATCCACAG+TGG 0.744930 1:-96767915 MsG0180005839.01.T01:CDS
TGATGCTGTGAAGTGCCACG+TGG 0.762196 1:-96767206 MsG0180005839.01.T01:CDS
ACTGTAGTTCATCTCCACGG+TGG 0.766322 1:-96768258 MsG0180005839.01.T01:CDS
TCGTTGGTGGAAGATCTCTG+TGG 0.788055 1:+96768457 None:intergenic
ACGTGGATGAGCATGCACGT+GGG 0.795561 1:-96767189 MsG0180005839.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCAATGTAAAAAATTAATA+TGG + Chr1:96766849-96766868 None:intergenic 10.0%
!!! CATACTAATATTTTTATAAT+AGG - Chr1:96768078-96768097 MsG0180005839.01.T01:CDS 10.0%
!!! GTAGTTTTTTTTTTTTTTTT+GGG - Chr1:96770899-96770918 MsG0180005839.01.T01:exon 10.0%
!!! TAGTTTTTTTTTTTTTTTTG+GGG - Chr1:96770900-96770919 MsG0180005839.01.T01:five_prime_UTR 10.0%
!!! TGTAGTTTTTTTTTTTTTTT+TGG - Chr1:96770898-96770917 MsG0180005839.01.T01:exon 10.0%
!! TAACTTAATTATATATACCT+AGG - Chr1:96766890-96766909 MsG0180005839.01.T01:CDS 15.0%
!! TTGAGAAAAGAAAAATAAAA+TGG + Chr1:96767336-96767355 None:intergenic 15.0%
!!! ATTTTTAGAAATATCTCTTT+AGG - Chr1:96767290-96767309 MsG0180005839.01.T01:CDS 15.0%
!!! TATGAAATTTGTAATTTTAC+CGG - Chr1:96769549-96769568 MsG0180005839.01.T01:intron 15.0%
!!! TTATTTTTCTTTTCTCAATA+AGG - Chr1:96767338-96767357 MsG0180005839.01.T01:CDS 15.0%
!!! TTTTTAGAAATATCTCTTTA+GGG - Chr1:96767291-96767310 MsG0180005839.01.T01:CDS 15.0%
!! AAAACATAAGAAACAAATGT+AGG + Chr1:96770338-96770357 None:intergenic 20.0%
!! AAACAAGTAAAGAATGAATT+TGG + Chr1:96766549-96766568 None:intergenic 20.0%
!! AATATCTACATCAAAATTGA+AGG + Chr1:96770176-96770195 None:intergenic 20.0%
!! ACATAAAATCTAAATTGCTT+CGG + Chr1:96767131-96767150 None:intergenic 20.0%
!! AGTATTATAAAGAGAGAAAA+AGG + Chr1:96766174-96766193 None:intergenic 20.0%
!! TACTTATGAGAAGAAAAAAA+AGG + Chr1:96770116-96770135 None:intergenic 20.0%
!! TAGATAACTTTCTTTCTTAT+TGG - Chr1:96766606-96766625 MsG0180005839.01.T01:three_prime_UTR 20.0%
!! TTGCATTTAAAAAAGTCTAA+CGG + Chr1:96766959-96766978 None:intergenic 20.0%
!! TTTAAATTTGTAGCATTTGA+TGG + Chr1:96767394-96767413 None:intergenic 20.0%
!!! ACCATAGGTATTTTATAAAA+AGG + Chr1:96768278-96768297 None:intergenic 20.0%
!!! ACTCATCTCTTATATTTTTA+AGG - Chr1:96767903-96767922 MsG0180005839.01.T01:CDS 20.0%
!!! AGAGATATTTCTAAAAATAG+TGG + Chr1:96767288-96767307 None:intergenic 20.0%
!!! AGATTAATTGCATTTGTTTT+TGG - Chr1:96770597-96770616 MsG0180005839.01.T01:intron 20.0%
!!! TCATAATTTGTCTAAAATTG+TGG - Chr1:96770534-96770553 MsG0180005839.01.T01:intron 20.0%
!!! TCCTTTTTATAAAATACCTA+TGG - Chr1:96768274-96768293 MsG0180005839.01.T01:CDS 20.0%
!!! TTCAATTTTGATGTAGATAT+TGG - Chr1:96770175-96770194 MsG0180005839.01.T01:intron 20.0%
! AAAATTGTGATCAATACCAT+AGG + Chr1:96768293-96768312 None:intergenic 25.0%
! AAATATAAGAGATGAGTTTG+AGG + Chr1:96767900-96767919 None:intergenic 25.0%
! AAGTAAATATATGCATACAC+AGG - Chr1:96770503-96770522 MsG0180005839.01.T01:intron 25.0%
! AATAAAGACAACACAATAAG+CGG + Chr1:96766518-96766537 None:intergenic 25.0%
! ACCATAGAAAAACAAAATTG+AGG + Chr1:96770872-96770891 None:intergenic 25.0%
! AGAGTCAACAATGATAATAT+AGG - Chr1:96770258-96770277 MsG0180005839.01.T01:intron 25.0%
! AGTTCCATCAAAATAGTTAA+TGG - Chr1:96766814-96766833 MsG0180005839.01.T01:intron 25.0%
! ATAACTTTCTTTCTTATTGG+TGG - Chr1:96766731-96766750 MsG0180005839.01.T01:intron 25.0%
! ATCCTAAAATTCATGAACTT+TGG + Chr1:96766585-96766604 None:intergenic 25.0%
! GGAATTGTAATAATCAATCA+TGG + Chr1:96767367-96767386 None:intergenic 25.0%
! TAAGACAAAGTTTCTATTAG+TGG + Chr1:96768143-96768162 None:intergenic 25.0%
! TCATGTGTAAGTAAATAAGA+GGG + Chr1:96770968-96770987 None:intergenic 25.0%
! TTCATGTGTAAGTAAATAAG+AGG + Chr1:96770969-96770988 None:intergenic 25.0%
!! ATCTCTAGATAATTTTTCTG+TGG - Chr1:96766649-96766668 MsG0180005839.01.T01:three_prime_UTR 25.0%
!! TATTCATTTGGGTTTGTTTA+AGG - Chr1:96769813-96769832 MsG0180005839.01.T01:intron 25.0%
!! TCTCTAGATAATTTTTCTGT+GGG - Chr1:96766650-96766669 MsG0180005839.01.T01:three_prime_UTR 25.0%
!! TGAAAGTGACTTATTTCTTT+GGG + Chr1:96767195-96767214 None:intergenic 25.0%
!! TTGAAAGTGACTTATTTCTT+TGG + Chr1:96767196-96767215 None:intergenic 25.0%
!! TTGTTACAAAGATTGTTGTT+AGG - Chr1:96770001-96770020 MsG0180005839.01.T01:intron 25.0%
!!! AAGTCCATTAACTATTTTGA+TGG + Chr1:96766821-96766840 None:intergenic 25.0%
!!! ACCTCAATTTTGTTTTTCTA+TGG - Chr1:96770868-96770887 MsG0180005839.01.T01:CDS 25.0%
!!! ATTTGTTTTTGGTCGAATTT+GGG - Chr1:96770608-96770627 MsG0180005839.01.T01:intron 25.0%
!!! TATGGTATTGATCACAATTT+TGG - Chr1:96768292-96768311 MsG0180005839.01.T01:CDS 25.0%
AAAATGGCATACATATGATG+TGG - Chr1:96770406-96770425 MsG0180005839.01.T01:intron 30.0%
AAACCCAAATGAATATGAAG+TGG + Chr1:96769808-96769827 None:intergenic 30.0%
AAATCAAAGTCTCTCAAGAT+TGG - Chr1:96766418-96766437 MsG0180005839.01.T01:three_prime_UTR 30.0%
AACCCAAATGAATATGAAGT+GGG + Chr1:96769807-96769826 None:intergenic 30.0%
AATACAAAGTTTCTGATACC+TGG - Chr1:96766693-96766712 MsG0180005839.01.T01:three_prime_UTR 30.0%
AATCTTGAGAGACTTTGATT+TGG + Chr1:96766419-96766438 None:intergenic 30.0%
AATTAAACAATGCTCCAAAG+TGG + Chr1:96768475-96768494 None:intergenic 30.0%
ACACTTGATAAATCAACAAC+CGG + Chr1:96769622-96769641 None:intergenic 30.0%
ACAGATTGAACTTGTATTGT+AGG - Chr1:96770383-96770402 MsG0180005839.01.T01:intron 30.0%
AGTTTGAGGAAATTACAGTT+TGG + Chr1:96767886-96767905 None:intergenic 30.0%
ATACAAAGTTTCTGATACCT+GGG - Chr1:96766694-96766713 MsG0180005839.01.T01:three_prime_UTR 30.0%
CATCTGATTCTGCTTATATT+GGG - Chr1:96769368-96769387 MsG0180005839.01.T01:intron 30.0%
CATGATACCATAAATTTCCA+GGG + Chr1:96768982-96769001 None:intergenic 30.0%
CATTCTTTACTTGTTTCGAT+AGG - Chr1:96766553-96766572 MsG0180005839.01.T01:three_prime_UTR 30.0%
CTATGAGAATTGATATTGCT+TGG - Chr1:96770669-96770688 MsG0180005839.01.T01:CDS 30.0%
GAACTTGTATTGTAGGAAAA+TGG - Chr1:96770390-96770409 MsG0180005839.01.T01:intron 30.0%
GCATTATAGAAAACAAGTTG+TGG + Chr1:96768619-96768638 None:intergenic 30.0%
GCGTTCAAATACAAATGAAT+TGG + Chr1:96769697-96769716 None:intergenic 30.0%
GGTGAAATCTGATGAATTTA+AGG - Chr1:96769855-96769874 MsG0180005839.01.T01:intron 30.0%
GTTATAGTTGATTATGCATC+TGG + Chr1:96767495-96767514 None:intergenic 30.0%
GTTTAATCCGTATGCATAAA+CGG + Chr1:96768672-96768691 None:intergenic 30.0%
TAATAATCAATCATGGCATC+TGG + Chr1:96767261-96767280 None:intergenic 30.0%
TATCTAGATCAAAAAAACCC+AGG + Chr1:96766714-96766733 None:intergenic 30.0%
TCATCATAGCATTATCTTCA+TGG + Chr1:96770202-96770221 None:intergenic 30.0%
TCATGATACCATAAATTTCC+AGG + Chr1:96768983-96769002 None:intergenic 30.0%
TTGATATTGCTTGGAATAGA+CGG - Chr1:96770678-96770697 MsG0180005839.01.T01:CDS 30.0%
TTTCGTGTGTAATTAATCCT+AGG + Chr1:96766910-96766929 None:intergenic 30.0%
TTTGTAGCATTTGATGGAAA+AGG + Chr1:96767388-96767407 None:intergenic 30.0%
! ACATTTCTGGATAACCATAA+CGG - Chr1:96767855-96767874 MsG0180005839.01.T01:CDS 30.0%
! ATCTTGAGAGACTTTGATTT+GGG + Chr1:96766418-96766437 None:intergenic 30.0%
! GACCAAAGTTCATGAATTTT+AGG - Chr1:96766580-96766599 MsG0180005839.01.T01:three_prime_UTR 30.0%
! TCGATTTTCATGAATTCAAC+TGG - Chr1:96769160-96769179 MsG0180005839.01.T01:intron 30.0%
! TGATGATGATGATGTTGATA+AGG + Chr1:96766290-96766309 None:intergenic 30.0%
! TGGCTTGTAATAATCAATCA+TGG + Chr1:96767268-96767287 None:intergenic 30.0%
! TTTGGGTTCTTGTAATATAG+TGG - Chr1:96770625-96770644 MsG0180005839.01.T01:intron 30.0%
!! ATTCGATCGTAGCTTTAAAA+CGG - Chr1:96769132-96769151 MsG0180005839.01.T01:intron 30.0%
!! CACTTCTTTTGAAGAAAGTA+CGG + Chr1:96767957-96767976 None:intergenic 30.0%
!! TCTTTTGAGAATGAGATCTA+AGG + Chr1:96767593-96767612 None:intergenic 30.0%
!! TTATCATTGTTGACTCTCAT+TGG + Chr1:96770255-96770274 None:intergenic 30.0%
!! TTTGGGTTTGTTTAAGGTTT+TGG - Chr1:96769819-96769838 MsG0180005839.01.T01:intron 30.0%
!! TTTTGGGGATTTAGTAAGTT+TGG - Chr1:96770915-96770934 MsG0180005839.01.T01:five_prime_UTR 30.0%
!!! AGAATTTTTCAAGACACAAC+TGG + Chr1:96767760-96767779 None:intergenic 30.0%
!!! ATATGACTTTTTTGTCCAAG+TGG + Chr1:96768939-96768958 None:intergenic 30.0%
!!! CACTAATTTTTAGTGACGAT+GGG - Chr1:96767546-96767565 MsG0180005839.01.T01:CDS 30.0%
!!! CATTTGTTTTTGGTCGAATT+TGG - Chr1:96770607-96770626 MsG0180005839.01.T01:intron 30.0%
!!! TAAGATCTTTTTAGAGCTTG+TGG + Chr1:96768348-96768367 None:intergenic 30.0%
!!! TATGACTTTTTTGTCCAAGT+GGG + Chr1:96768938-96768957 None:intergenic 30.0%
!!! TCACTAATTTTTAGTGACGA+TGG - Chr1:96767545-96767564 MsG0180005839.01.T01:CDS 30.0%
AAACACAAAGCAACAATTCC+TGG - Chr1:96768692-96768711 MsG0180005839.01.T01:intron 35.0%
AAATCAAATTCGTTACCGTG+TGG + Chr1:96769100-96769119 None:intergenic 35.0%
AAATGCTAACCATTACCCTT+GGG + Chr1:96768255-96768274 None:intergenic 35.0%
AACTCATTCATTCTCCACTT+TGG - Chr1:96768458-96768477 MsG0180005839.01.T01:CDS 35.0%
AAGGTTCCTGATTATGAGAA+AGG - Chr1:96769946-96769965 MsG0180005839.01.T01:intron 35.0%
ACAATCTTTGTAACAAACCC+AGG + Chr1:96769997-96770016 None:intergenic 35.0%
ACTTTCGCAATTTCTGTAAC+CGG + Chr1:96769736-96769755 None:intergenic 35.0%
AGAGTTTCATTACTTGCAAC+TGG + Chr1:96769397-96769416 None:intergenic 35.0%
AGGTTCCTGATTATGAGAAA+GGG - Chr1:96769947-96769966 MsG0180005839.01.T01:intron 35.0%
AGTGATGTTGCAAATATTCG+TGG - Chr1:96767973-96767992 MsG0180005839.01.T01:CDS 35.0%
ATAAAGAAGTTGACACGTCA+CGG - Chr1:96769572-96769591 MsG0180005839.01.T01:intron 35.0%
ATAATTCATTCCCCAACTAG+TGG - Chr1:96768321-96768340 MsG0180005839.01.T01:CDS 35.0%
ATACATACCAATGCAACGTA+TGG - Chr1:96770033-96770052 MsG0180005839.01.T01:intron 35.0%
ATCAACAAACATCTTCAGCT+TGG + Chr1:96766344-96766363 None:intergenic 35.0%
ATCAACACCCTGGAAATTTA+TGG - Chr1:96768972-96768991 MsG0180005839.01.T01:intron 35.0%
ATGGTATCATGATCATGCTA+TGG - Chr1:96768991-96769010 MsG0180005839.01.T01:intron 35.0%
ATTCTAAACACCATTCGTCA+AGG - Chr1:96770792-96770811 MsG0180005839.01.T01:CDS 35.0%
ATTGCGTCACCAAAATATTC+TGG + Chr1:96769217-96769236 None:intergenic 35.0%
ATTTGGTAAGGAAAACTGCA+TGG + Chr1:96767237-96767256 None:intergenic 35.0%
CAAGTAATGAAACTCTTGTG+GGG - Chr1:96769401-96769420 MsG0180005839.01.T01:intron 35.0%
CACCCACTTCATATTCATTT+GGG - Chr1:96769802-96769821 MsG0180005839.01.T01:intron 35.0%
CAGTGAGAACTCAAAACAAT+AGG + Chr1:96766142-96766161 None:intergenic 35.0%
CTACGATCGAATAACATCAA+CGG + Chr1:96769124-96769143 None:intergenic 35.0%
CTTCACTTGATCATCTTCAA+GGG + Chr1:96770227-96770246 None:intergenic 35.0%
GCAAGTAATGAAACTCTTGT+GGG - Chr1:96769400-96769419 MsG0180005839.01.T01:intron 35.0%
GCATCTGATTCTGCTTATAT+TGG - Chr1:96769367-96769386 MsG0180005839.01.T01:intron 35.0%
GTGATGTTGCAAATATTCGT+GGG - Chr1:96767974-96767993 MsG0180005839.01.T01:CDS 35.0%
GTTACAGAAATTGCGAAAGT+GGG - Chr1:96769736-96769755 MsG0180005839.01.T01:intron 35.0%
TACATACCAATGCAACGTAT+GGG - Chr1:96770034-96770053 MsG0180005839.01.T01:intron 35.0%
TATCCAAATAATCAACACCC+TGG - Chr1:96768962-96768981 MsG0180005839.01.T01:intron 35.0%
TCACCACTAAAATTACCACA+CGG - Chr1:96769082-96769101 MsG0180005839.01.T01:intron 35.0%
TCACCCACTTCATATTCATT+TGG - Chr1:96769801-96769820 MsG0180005839.01.T01:intron 35.0%
TCATTGACCAAAACAACCAA+TGG - Chr1:96768815-96768834 MsG0180005839.01.T01:intron 35.0%
TCATTGTAAACGGTAAAGCT+TGG - Chr1:96769236-96769255 MsG0180005839.01.T01:intron 35.0%
TGAATGAGAGCAAATTTGTG+AGG + Chr1:96770763-96770782 None:intergenic 35.0%
TGATTCTGCAATCTTCAGAA+GGG - Chr1:96770724-96770743 MsG0180005839.01.T01:CDS 35.0%
TGCAAGTAATGAAACTCTTG+TGG - Chr1:96769399-96769418 MsG0180005839.01.T01:intron 35.0%
TGGATGACACTAAAAAGGTT+GGG + Chr1:96768409-96768428 None:intergenic 35.0%
TGGCATGTTCAAGAAGAAAT+GGG - Chr1:96766438-96766457 MsG0180005839.01.T01:three_prime_UTR 35.0%
TGGTATCATGATCATGCTAT+GGG - Chr1:96768992-96769011 MsG0180005839.01.T01:intron 35.0%
TTACAGAAATTGCGAAAGTG+GGG - Chr1:96769737-96769756 MsG0180005839.01.T01:intron 35.0%
TTAGTGGTGATTCGATTGAA+GGG + Chr1:96769072-96769091 None:intergenic 35.0%
TTCTAAACACCATTCGTCAA+GGG - Chr1:96770793-96770812 MsG0180005839.01.T01:CDS 35.0%
TTGGCATGTTCAAGAAGAAA+TGG - Chr1:96766437-96766456 MsG0180005839.01.T01:three_prime_UTR 35.0%
TTTAGTGGTGATTCGATTGA+AGG + Chr1:96769073-96769092 None:intergenic 35.0%
! AACCTTCTAGCTGGTTTAAT+TGG - Chr1:96769028-96769047 MsG0180005839.01.T01:intron 35.0%
! AATGTGTTTAAGATGAGACC+TGG - Chr1:96769976-96769995 MsG0180005839.01.T01:intron 35.0%
! AATTTTTCTGTGGGTTCACA+TGG - Chr1:96766659-96766678 MsG0180005839.01.T01:three_prime_UTR 35.0%
! ACCTTCTAGCTGGTTTAATT+GGG - Chr1:96769029-96769048 MsG0180005839.01.T01:intron 35.0%
! ATGTGTTTAAGATGAGACCT+GGG - Chr1:96769977-96769996 MsG0180005839.01.T01:intron 35.0%
! CAAGTAACGCTAGATTTTTC+AGG - Chr1:96769308-96769327 MsG0180005839.01.T01:intron 35.0%
! GCACGTATAAATGCATGTTT+TGG + Chr1:96770316-96770335 None:intergenic 35.0%
! GCTACTTTCTTGTAAACACT+CGG - Chr1:96770439-96770458 MsG0180005839.01.T01:intron 35.0%
! TGAGATCTAAGGTTTACCTA+CGG + Chr1:96767582-96767601 None:intergenic 35.0%
! TGGTTTAAGATTTGTACACG+TGG - Chr1:96769345-96769364 MsG0180005839.01.T01:intron 35.0%
! TTACCACTAGTTTCATCAAC+TGG + Chr1:96769526-96769545 None:intergenic 35.0%
! TTACCGTGTGGTAATTTTAG+TGG + Chr1:96769088-96769107 None:intergenic 35.0%
!! AGTTGATGAAACTAGTGGTA+AGG - Chr1:96769525-96769544 MsG0180005839.01.T01:intron 35.0%
!! TTTCCAGGGTGTTGATTATT+TGG + Chr1:96768968-96768987 None:intergenic 35.0%
!! TTTGCTCTCATTCACTTTTC+TGG - Chr1:96770769-96770788 MsG0180005839.01.T01:CDS 35.0%
!!! GTATAAATGCATGTTTTGGC+TGG + Chr1:96770312-96770331 None:intergenic 35.0%
!!! GTTGTTTTGGTCAATGAAGT+GGG + Chr1:96768812-96768831 None:intergenic 35.0%
!!! GTTTAAGGTTTTGGATCAGA+CGG - Chr1:96769828-96769847 MsG0180005839.01.T01:intron 35.0%
!!! TTCAGGCTCTTTTTCAGTAA+TGG - Chr1:96769325-96769344 MsG0180005839.01.T01:intron 35.0%
!!! TTGTTTTGGTCAATGAAGTG+GGG + Chr1:96768811-96768830 None:intergenic 35.0%
AACCTTGTAGCCATAGACTT+TGG + Chr1:96766383-96766402 None:intergenic 40.0%
AACTACAGTGGGAATACCAT+TGG + Chr1:96768834-96768853 None:intergenic 40.0%
AATCCTTAACCATTGCCCTT+AGG + Chr1:96768120-96768139 None:intergenic 40.0%
AATGCTAACCATTACCCTTG+GGG + Chr1:96768254-96768273 None:intergenic 40.0%
ACCCAAATGGCAGTTTGTAA+AGG - Chr1:96767462-96767481 MsG0180005839.01.T01:CDS 40.0%
ACCCTTTACAAACTGCCATT+TGG + Chr1:96767467-96767486 None:intergenic 40.0%
ACCGCTGGATTCAAAATCAA+GGG - Chr1:96768911-96768930 MsG0180005839.01.T01:intron 40.0%
ACCTTGTAGCCATAGACTTT+GGG + Chr1:96766382-96766401 None:intergenic 40.0%
AGACTTTGGGCATATTAGGA+AGG + Chr1:96766369-96766388 None:intergenic 40.0%
AGCAAAGCTACACAGTTCAT+AGG - Chr1:96770463-96770482 MsG0180005839.01.T01:intron 40.0%
AGGAGATGTGACTGAAGAAT+AGG - Chr1:96767701-96767720 MsG0180005839.01.T01:CDS 40.0%
AGTCACATCTCCTTGAATTG+TGG + Chr1:96767694-96767713 None:intergenic 40.0%
AGTTTCATCAACTGGATCAC+CGG + Chr1:96769518-96769537 None:intergenic 40.0%
ATAACGTCTGTGATCTCAGA+TGG + Chr1:96769427-96769446 None:intergenic 40.0%
ATCAAACCCATACGTTGCAT+TGG + Chr1:96770043-96770062 None:intergenic 40.0%
ATCCTTAACCATTGCCCTTA+GGG + Chr1:96768119-96768138 None:intergenic 40.0%
ATGGCATCTGGTATTTGGTA+AGG + Chr1:96767249-96767268 None:intergenic 40.0%
CAATCATGGCATCTGGTATT+TGG + Chr1:96767254-96767273 None:intergenic 40.0%
CCATAGACTTTGGGCATATT+AGG + Chr1:96766373-96766392 None:intergenic 40.0%
CCCAAATGGCAGTTTGTAAA+GGG - Chr1:96767463-96767482 MsG0180005839.01.T01:CDS 40.0%
CCTAATATGCCCAAAGTCTA+TGG - Chr1:96766370-96766389 MsG0180005839.01.T01:three_prime_UTR 40.0%
CTCAAATCCACCTTACAACA+AGG - Chr1:96766198-96766217 MsG0180005839.01.T01:three_prime_UTR 40.0%
CTGAGTGGATGACACTAAAA+AGG + Chr1:96768414-96768433 None:intergenic 40.0%
CTGATTCTGCAATCTTCAGA+AGG - Chr1:96770723-96770742 MsG0180005839.01.T01:CDS 40.0%
GAAATGCTAACCATTACCCT+TGG + Chr1:96768256-96768275 None:intergenic 40.0%
GACGTGTCAACTTCTTTATC+CGG + Chr1:96769571-96769590 None:intergenic 40.0%
GATGACACTAAAAAGGTTGG+GGG + Chr1:96768407-96768426 None:intergenic 40.0%
GCTTCACTTGATCATCTTCA+AGG + Chr1:96770228-96770247 None:intergenic 40.0%
GGAAAAGCTTGTGGAATATC+CGG - Chr1:96769600-96769619 MsG0180005839.01.T01:intron 40.0%
GGATGACACTAAAAAGGTTG+GGG + Chr1:96768408-96768427 None:intergenic 40.0%
GGATTTAGTAAGTTTGGCTG+TGG - Chr1:96770921-96770940 MsG0180005839.01.T01:five_prime_UTR 40.0%
GGTGACGCAATCATTGTAAA+CGG - Chr1:96769226-96769245 MsG0180005839.01.T01:intron 40.0%
GGTTACAGAAATTGCGAAAG+TGG - Chr1:96769735-96769754 MsG0180005839.01.T01:intron 40.0%
GTATGGGTTTGATGCAACTA+AGG - Chr1:96770050-96770069 MsG0180005839.01.T01:intron 40.0%
GTGGATGACACTAAAAAGGT+TGG + Chr1:96768410-96768429 None:intergenic 40.0%
GTTTGGATTTCCATCGCTTT+CGG + Chr1:96768882-96768901 None:intergenic 40.0%
TATGGCTACAAGGTTGTAGA+TGG - Chr1:96766388-96766407 MsG0180005839.01.T01:three_prime_UTR 40.0%
TCAATGAAGTGGGGATAGTT+GGG + Chr1:96768802-96768821 None:intergenic 40.0%
TCCAAATCACATACTCCCAT+GGG - Chr1:96768775-96768794 MsG0180005839.01.T01:intron 40.0%
TCCCAATTAAACCAGCTAGA+AGG + Chr1:96769033-96769052 None:intergenic 40.0%
TCTAAACACCATTCGTCAAG+GGG - Chr1:96770794-96770813 MsG0180005839.01.T01:CDS 40.0%
TGGGGTCATCAAAAAAGGAA+GGG + Chr1:96767930-96767949 None:intergenic 40.0%
TTCCACCCTTTCTCATAATC+AGG + Chr1:96769955-96769974 None:intergenic 40.0%
TTCCTGATTATGAGAAAGGG+TGG - Chr1:96769950-96769969 MsG0180005839.01.T01:intron 40.0%
TTTGATGCAACTAAGGAGTC+TGG - Chr1:96770057-96770076 MsG0180005839.01.T01:intron 40.0%
TTTGGATTTCCATCGCTTTC+GGG + Chr1:96768881-96768900 None:intergenic 40.0%
! AAATATTCTGGTTGCCACTG+TGG + Chr1:96769205-96769224 None:intergenic 40.0%
! ACAGTTTGGAACAACCGTTA+TGG + Chr1:96767872-96767891 None:intergenic 40.0%
! ATGCATATGCAGAGCGTTAA+AGG + Chr1:96767424-96767443 None:intergenic 40.0%
! ATGGGAGTATGTGATTTGGA+GGG + Chr1:96768775-96768794 None:intergenic 40.0%
! CAGTGGCAACCAGAATATTT+TGG - Chr1:96769205-96769224 MsG0180005839.01.T01:intron 40.0%
! CCCTTTACAAACTGCCATTT+GGG + Chr1:96767466-96767485 None:intergenic 40.0%
! GGATATTCCACAAGCTTTTC+CGG + Chr1:96769601-96769620 None:intergenic 40.0%
! TCCCTTGATTTTGAATCCAG+CGG + Chr1:96768915-96768934 None:intergenic 40.0%
! TTGAAGAAAGTACGGAACCT+GGG + Chr1:96767949-96767968 None:intergenic 40.0%
! TTTGAAGAAAGTACGGAACC+TGG + Chr1:96767950-96767969 None:intergenic 40.0%
!! CTTTTTAGTGTCATCCACTC+AGG - Chr1:96768412-96768431 MsG0180005839.01.T01:CDS 40.0%
!! GATCCAGTTGATGAAACTAG+TGG - Chr1:96769520-96769539 MsG0180005839.01.T01:intron 40.0%
!! GATCGTAGCTTTAAAACGGA+CGG - Chr1:96769136-96769155 MsG0180005839.01.T01:intron 40.0%
!! GGGAATACCATTGGTTGTTT+TGG + Chr1:96768825-96768844 None:intergenic 40.0%
!! TGGGGCAATGAATTTTGAGA+AGG + Chr1:96767814-96767833 None:intergenic 40.0%
!!! GGTTGTTTTGGTCAATGAAG+TGG + Chr1:96768813-96768832 None:intergenic 40.0%
!!! TGGCTGTGGTTTTATCTCTT+TGG - Chr1:96770935-96770954 MsG0180005839.01.T01:five_prime_UTR 40.0%
AAACTGCATGGTTGAGTCGT+TGG + Chr1:96767225-96767244 None:intergenic 45.0%
AAATTACCCCCCTTGACGAA+TGG + Chr1:96770805-96770824 None:intergenic 45.0%
AACTGCATGGTTGAGTCGTT+GGG + Chr1:96767224-96767243 None:intergenic 45.0%
AATCACATACCACACCTCAC+TGG + Chr1:96769764-96769783 None:intergenic 45.0%
ACACTTTAACCAATGCCCCA+AGG - Chr1:96768236-96768255 MsG0180005839.01.T01:CDS 45.0%
ACCTTACAACAAGGTAGCGA+TGG - Chr1:96766207-96766226 MsG0180005839.01.T01:three_prime_UTR 45.0%
AGGTTGGGGGAACTAATTCT+AGG + Chr1:96768394-96768413 None:intergenic 45.0%
AGTAAGTGTCAAGACCTGAG+TGG + Chr1:96768429-96768448 None:intergenic 45.0%
ATCCAGAAATGTGTAGCCCA+GGG + Chr1:96767847-96767866 None:intergenic 45.0%
ATCCTTCGATTCATCCACAG+TGG - Chr1:96769188-96769207 MsG0180005839.01.T01:intron 45.0%
ATTCATGAACCCGAAAGCGA+TGG - Chr1:96768869-96768888 MsG0180005839.01.T01:intron 45.0%
CACCGCTGGATTCAAAATCA+AGG - Chr1:96768910-96768929 MsG0180005839.01.T01:intron 45.0%
CACTTTAACCAATGCCCCAA+GGG - Chr1:96768237-96768256 MsG0180005839.01.T01:CDS 45.0%
CATTTGGGTAGCTAAGACCA+GGG + Chr1:96767451-96767470 None:intergenic 45.0%
CCAACGACCGTTTATGCATA+CGG - Chr1:96768662-96768681 MsG0180005839.01.T01:intron 45.0%
CCAGCGGTGAAAAATGAGTT+TGG + Chr1:96768899-96768918 None:intergenic 45.0%
CTAAACACCATTCGTCAAGG+GGG - Chr1:96770795-96770814 MsG0180005839.01.T01:CDS 45.0%
CTCCAAATCACATACTCCCA+TGG - Chr1:96768774-96768793 MsG0180005839.01.T01:intron 45.0%
CTGGGGTCATCAAAAAAGGA+AGG + Chr1:96767931-96767950 None:intergenic 45.0%
GAACCTGGGGTCATCAAAAA+AGG + Chr1:96767935-96767954 None:intergenic 45.0%
GATGGGAAAATGTTAGCCGT+AGG - Chr1:96767563-96767582 MsG0180005839.01.T01:CDS 45.0%
GCACTCTTTGCCACAATTCA+AGG - Chr1:96767681-96767700 MsG0180005839.01.T01:CDS 45.0%
GTCAATGAAGTGGGGATAGT+TGG + Chr1:96768803-96768822 None:intergenic 45.0%
GTGTGTGGAGATTCCATTGA+GGG + Chr1:96768732-96768751 None:intergenic 45.0%
TAAACACCATTCGTCAAGGG+GGG - Chr1:96770796-96770815 MsG0180005839.01.T01:CDS 45.0%
TATCCAGAAATGTGTAGCCC+AGG + Chr1:96767848-96767867 None:intergenic 45.0%
TATGCATAAACGGTCGTTGG+TGG + Chr1:96768662-96768681 None:intergenic 45.0%
TCAAAATCAAGGGACCCACT+TGG - Chr1:96768921-96768940 MsG0180005839.01.T01:intron 45.0%
TCACATGGCACACAAGTCAT+TGG - Chr1:96768006-96768025 MsG0180005839.01.T01:CDS 45.0%
TCTGTAACCGGTGCTTCATA+AGG + Chr1:96769724-96769743 None:intergenic 45.0%
TGCACGTGGGAAGAAAGTTA+AGG - Chr1:96769927-96769946 MsG0180005839.01.T01:intron 45.0%
! ATCGCTACCTTGTTGTAAGG+TGG + Chr1:96766208-96766227 None:intergenic 45.0%
! CATGGGAGTATGTGATTTGG+AGG + Chr1:96768776-96768795 None:intergenic 45.0%
! CGTGTGTAGAGAAGTTGATC+AGG - Chr1:96770832-96770851 MsG0180005839.01.T01:CDS 45.0%
! GGCAAAGAGTGCATTGTGAT+TGG + Chr1:96767673-96767692 None:intergenic 45.0%
! GTGTAGAGAAGTTGATCAGG+TGG - Chr1:96770835-96770854 MsG0180005839.01.T01:CDS 45.0%
! TCCATCGCTACCTTGTTGTA+AGG + Chr1:96766211-96766230 None:intergenic 45.0%
! TCCCATGGGAGTATGTGATT+TGG + Chr1:96768779-96768798 None:intergenic 45.0%
! TGAAGAAAGTACGGAACCTG+GGG + Chr1:96767948-96767967 None:intergenic 45.0%
!! CCAAACTCATTTTTCACCGC+TGG - Chr1:96768896-96768915 MsG0180005839.01.T01:intron 45.0%
!!! CTTCCTTTTTTGATGACCCC+AGG - Chr1:96767929-96767948 MsG0180005839.01.T01:CDS 45.0%
!!! TATTTTATTTTATTGAATTA+AGG + Chr1:96770564-96770583 None:intergenic 5.0%
AACCAATGCCCCAAGGGTAA+TGG - Chr1:96768243-96768262 MsG0180005839.01.T01:CDS 50.0%
AACCATTACCCTTGGGGCAT+TGG + Chr1:96768248-96768267 None:intergenic 50.0%
ACCAGAGTCAACCTTCTAGC+TGG - Chr1:96769019-96769038 MsG0180005839.01.T01:intron 50.0%
ACCGTGGAGATGAACTACAG+TGG + Chr1:96768846-96768865 None:intergenic 50.0%
ACGGATACCGGAAAAGCTTG+TGG - Chr1:96769591-96769610 MsG0180005839.01.T01:intron 50.0%
ACTGCATGGTTGAGTCGTTG+GGG + Chr1:96767223-96767242 None:intergenic 50.0%
ACTGTAGTTCATCTCCACGG+TGG - Chr1:96768845-96768864 MsG0180005839.01.T01:intron 50.0%
AGAGCTTGTGGTCCACTAGT+TGG + Chr1:96768336-96768355 None:intergenic 50.0%
AGCTTGTGGTCCACTAGTTG+GGG + Chr1:96768334-96768353 None:intergenic 50.0%
AGTTGACACGTCACGGATAC+CGG - Chr1:96769579-96769598 MsG0180005839.01.T01:intron 50.0%
CCAACAATCGAAGCCCTCAA+TGG - Chr1:96768716-96768735 MsG0180005839.01.T01:intron 50.0%
CCATTGAGGGCTTCGATTGT+TGG + Chr1:96768719-96768738 None:intergenic 50.0%
CCATTTGGGTAGCTAAGACC+AGG + Chr1:96767452-96767471 None:intergenic 50.0%
CCCACTGTAGTTCATCTCCA+CGG - Chr1:96768842-96768861 MsG0180005839.01.T01:intron 50.0%
CCGTATGCATAAACGGTCGT+TGG + Chr1:96768665-96768684 None:intergenic 50.0%
CCGTGGAGATGAACTACAGT+GGG + Chr1:96768845-96768864 None:intergenic 50.0%
CGACGTCGTACAGTTAAACG+TGG + Chr1:96769262-96769281 None:intergenic 50.0%
CGCGAAACCTTATGAAGCAC+CGG - Chr1:96769714-96769733 MsG0180005839.01.T01:intron 50.0%
CGTGGGACTGATATCTCACA+TGG - Chr1:96767991-96768010 MsG0180005839.01.T01:CDS 50.0%
CGTGTGTGGAGATTCCATTG+AGG + Chr1:96768733-96768752 None:intergenic 50.0%
CTTGCTAACCAGTGCCCTAA+GGG - Chr1:96768102-96768121 MsG0180005839.01.T01:CDS 50.0%
GAGCTTGTGGTCCACTAGTT+GGG + Chr1:96768335-96768354 None:intergenic 50.0%
GCAGCTTATCCTTACCCAAC+CGG - Chr1:96769496-96769515 MsG0180005839.01.T01:intron 50.0%
GCCCAAAGTCTATGGCTACA+AGG - Chr1:96766378-96766397 MsG0180005839.01.T01:three_prime_UTR 50.0%
TATCAAGTGTGACGCGCACA+CGG - Chr1:96769632-96769651 MsG0180005839.01.T01:intron 50.0%
TCATCAACTGGATCACCGGT+TGG + Chr1:96769514-96769533 None:intergenic 50.0%
TCCAGAAATGTGTAGCCCAG+GGG + Chr1:96767846-96767865 None:intergenic 50.0%
TCTGCATATGCATGTGACCC+TGG - Chr1:96767431-96767450 MsG0180005839.01.T01:CDS 50.0%
TCTTGCTAACCAGTGCCCTA+AGG - Chr1:96768101-96768120 MsG0180005839.01.T01:CDS 50.0%
TGAAGGGTCGCGAATGATGT+AGG + Chr1:96769056-96769075 None:intergenic 50.0%
TGCCACTGTGGATGAATCGA+AGG + Chr1:96769193-96769212 None:intergenic 50.0%
TGCCCTAAGGGCAATGGTTA+AGG - Chr1:96768114-96768133 MsG0180005839.01.T01:CDS 50.0%
! ACCAGCTAGAAGGTTGACTC+TGG + Chr1:96769023-96769042 None:intergenic 50.0%
! ATTTTGCCACGTCACGTGTG+TGG + Chr1:96768747-96768766 None:intergenic 50.0%
! CATCAACTGGATCACCGGTT+GGG + Chr1:96769513-96769532 None:intergenic 50.0%
! GGAGTATGTGATTTGGAGGG+AGG + Chr1:96768772-96768791 None:intergenic 50.0%
! TCGTTGGTGGAAGATCTCTG+TGG + Chr1:96768649-96768668 None:intergenic 50.0%
!! CCTGGTCTTAGCTACCCAAA+TGG - Chr1:96767449-96767468 MsG0180005839.01.T01:CDS 50.0%
AACCAGTGCCCTAAGGGCAA+TGG - Chr1:96768108-96768127 MsG0180005839.01.T01:CDS 55.0%
AACCATTGCCCTTAGGGCAC+TGG + Chr1:96768113-96768132 None:intergenic 55.0%
ACCCCTGGGCTACACATTTC+TGG - Chr1:96767842-96767861 MsG0180005839.01.T01:CDS 55.0%
ACGTGGATGAGCATGCACGT+GGG - Chr1:96769914-96769933 MsG0180005839.01.T01:intron 55.0%
AGGGCTTCGATTGTTGGACC+AGG + Chr1:96768713-96768732 None:intergenic 55.0%
CGGGTTCATGAATTCCACCG+TGG + Chr1:96768862-96768881 None:intergenic 55.0%
GAATCTCCACACACGTGACG+TGG - Chr1:96768738-96768757 MsG0180005839.01.T01:intron 55.0%
GCGGAGATTCGCATGCAATG+AGG + Chr1:96766499-96766518 None:intergenic 55.0%
TAGCCCAGGGGTTAAAGCGT+TGG + Chr1:96767834-96767853 None:intergenic 55.0%
TGGGGATAGTTGGGTCCCAT+GGG + Chr1:96768793-96768812 None:intergenic 55.0%
! ACTGGATCACCGGTTGGGTA+AGG + Chr1:96769508-96769527 None:intergenic 55.0%
! AGCCCAGGGGTTAAAGCGTT+GGG + Chr1:96767833-96767852 None:intergenic 55.0%
! GGCACACAAGTCATTGGCTG+TGG - Chr1:96768012-96768031 MsG0180005839.01.T01:CDS 55.0%
! TGATGCTGTGAAGTGCCACG+TGG - Chr1:96769897-96769916 MsG0180005839.01.T01:intron 55.0%
!!! GGTTTTGGATCAGACGGAGC+TGG - Chr1:96769834-96769853 MsG0180005839.01.T01:intron 55.0%
AAGTGGGGTCCAGTGAGGTG+TGG - Chr1:96769752-96769771 MsG0180005839.01.T01:intron 60.0%
CACGTGCATGCTCATCCACG+TGG + Chr1:96769915-96769934 None:intergenic 60.0%
CACGTGGATGAGCATGCACG+TGG - Chr1:96769913-96769932 MsG0180005839.01.T01:intron 60.0%
GCCCCAACGCTTTAACCCCT+GGG - Chr1:96767828-96767847 MsG0180005839.01.T01:CDS 60.0%
GTGGGGATAGTTGGGTCCCA+TGG + Chr1:96768794-96768813 None:intergenic 60.0%
TGCCCCAACGCTTTAACCCC+TGG - Chr1:96767827-96767846 MsG0180005839.01.T01:CDS 60.0%
TGCGAAAGTGGGGTCCAGTG+AGG - Chr1:96769747-96769766 MsG0180005839.01.T01:intron 60.0%
!! GCCCAGGGGTTAAAGCGTTG+GGG + Chr1:96767832-96767851 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 96766115 96771010 96766115 ID=MsG0180005839.01;Name=MsG0180005839.01
Chr1 mRNA 96766115 96771010 96766115 ID=MsG0180005839.01.T01;Parent=MsG0180005839.01;Name=MsG0180005839.01.T01;_AED=0.26;_eAED=0.26;_QI=111|1|1|1|0.66|0.5|4|641|581
Chr1 exon 96766115 96766720 96766115 ID=MsG0180005839.01.T01:exon:16225;Parent=MsG0180005839.01.T01
Chr1 exon 96766846 96766934 96766846 ID=MsG0180005839.01.T01:exon:16224;Parent=MsG0180005839.01.T01
Chr1 exon 96767027 96768484 96767027 ID=MsG0180005839.01.T01:exon:16223;Parent=MsG0180005839.01.T01
Chr1 exon 96770666 96771010 96770666 ID=MsG0180005839.01.T01:exon:16222;Parent=MsG0180005839.01.T01
Chr1 five_prime_UTR 96770900 96771010 96770900 ID=MsG0180005839.01.T01:five_prime_utr;Parent=MsG0180005839.01.T01
Chr1 CDS 96770666 96770899 96770666 ID=MsG0180005839.01.T01:cds;Parent=MsG0180005839.01.T01
Chr1 CDS 96767027 96768484 96767027 ID=MsG0180005839.01.T01:cds;Parent=MsG0180005839.01.T01
Chr1 CDS 96766881 96766934 96766881 ID=MsG0180005839.01.T01:cds;Parent=MsG0180005839.01.T01
Chr1 three_prime_UTR 96766846 96766880 96766846 ID=MsG0180005839.01.T01:three_prime_utr;Parent=MsG0180005839.01.T01
Chr1 three_prime_UTR 96766115 96766720 96766115 ID=MsG0180005839.01.T01:three_prime_utr;Parent=MsG0180005839.01.T01
Gene Sequence

>MsG0180005839.01.T01

ATGGAGAAAACAGTGCTCTTGAAGCTACTCACACTTTTAGCTCATTTACTATGTTTTGTTACCTTATCAACATCATCATCATCATCATCAGCTACAGTCAAACTCATAAATGCATCCAAGCTGAAGATGTTTGTTGATGACCTTCCTAATATGCCCAAAGTCTATGGCTACAAGGTTGTAGATGGCGTTCCCAAATCAAAGTCTCTCAAGATTGGCATGTTCAAGAAGAAATGGAAATTCCACAGAGATCTTCCACCAACGACCGTTTATGCATACGGATTAAACAAACACAAAGCAACAATTCCTGGTCCAACAATCGAAGCCCTCAATGGAATCTCCACACACGTGACGTGGCAAAATCACCTCCCTCCAAATCACATACTCCCATGGGACCCAACTATCCCCACTTCATTGACCAAAACAACCAATGGTATTCCCACTGTAGTTCATCTCCACGGTGGAATTCATGAACCCGAAAGCGATGGAAATCCAAACTCATTTTTCACCGCTGGATTCAAAATCAAGGGACCCACTTGGACAAAAAAGTCATATCACTATCCAAATAATCAACACCCTGGAAATTTATGGTATCATGATCATGCTATGGGTTTGACCAGAGTCAACCTTCTAGCTGGTTTAATTGGGACCTACATCATTCGCGACCCTTCAATCGAATCACCACTAAAATTACCACACGGTAACGAATTTGATTTACCGTTGATGTTATTCGATCGTAGCTTTAAAACGGACGGTTCGATTTTCATGAATTCAACTGGTAACAATCCTTCGATTCATCCACAGTGGCAACCAGAATATTTTGGTGACGCAATCATTGTAAACGGTAAAGCTTGGCCACGTTTAACTGTACGACGTCGTAAGTATAGATTTCGTATAATCAATGCAAGTAACGCTAGATTTTTCAGGCTCTTTTTCAGTAATGGTTTAAGATTTGTACACGTGGCATCTGATTCTGCTTATATTGGGAAGCCAGTTGCAAGTAATGAAACTCTTGTGGGGCCATCTGAGATCACAGACGTTATTGTTGATTTTTCTGAATCAAAGAGTAATGCAGCTATTCTACGTAATGATGCAGCTTATCCTTACCCAACCGGTGATCCAGTTGATGAAACTAGTGGTAAGGTTATGAAATTTGTAATTTTACCGGATAAAGAAGTTGACACGTCACGGATACCGGAAAAGCTTGTGGAATATCCGGTTGTTGATTTATCAAGTGTGACGCGCACACGGTATATTGCTATGTATGAGTACACGAGTGATATTGATGAACCAATTCATTTGTATTTGAACGCGAAACCTTATGAAGCACCGGTTACAGAAATTGCGAAAGTGGGGTCCAGTGAGGTGTGGTATGTGATTAATTTGACTGATGATAATCACCCACTTCATATTCATTTGGGTTTGTTTAAGGTTTTGGATCAGACGGAGCTGGTGAAATCTGATGAATTTAAGGATTGTATGACGAAAAATAATGATGCTGTGAAGTGCCACGTGGATGAGCATGCACGTGGGAAGAAAGTTAAGGTTCCTGATTATGAGAAAGGGTGGAAGAATGTGTTTAAGATGAGACCTGGGTTTGTTACAAAGATTGTTGTTAGGTTTGCTTACATACATACCAATGCAACGTATGGGTTTGATGCAACTAAGGAGTCTGGTTACGTGTATCATTGTCATATATTGGACCATGAAGATAATGCTATGATGAGACCCTTGAAGATGATCAAGTGA

Protein sequence

>MsG0180005839.01.T01

MEKTVLLKLLTLLAHLLCFVTLSTSSSSSSATVKLINASKLKMFVDDLPNMPKVYGYKVVDGVPKSKSLKIGMFKKKWKFHRDLPPTTVYAYGLNKHKATIPGPTIEALNGISTHVTWQNHLPPNHILPWDPTIPTSLTKTTNGIPTVVHLHGGIHEPESDGNPNSFFTAGFKIKGPTWTKKSYHYPNNQHPGNLWYHDHAMGLTRVNLLAGLIGTYIIRDPSIESPLKLPHGNEFDLPLMLFDRSFKTDGSIFMNSTGNNPSIHPQWQPEYFGDAIIVNGKAWPRLTVRRRKYRFRIINASNARFFRLFFSNGLRFVHVASDSAYIGKPVASNETLVGPSEITDVIVDFSESKSNAAILRNDAAYPYPTGDPVDETSGKVMKFVILPDKEVDTSRIPEKLVEYPVVDLSSVTRTRYIAMYEYTSDIDEPIHLYLNAKPYEAPVTEIAKVGSSEVWYVINLTDDNHPLHIHLGLFKVLDQTELVKSDEFKDCMTKNNDAVKCHVDEHARGKKVKVPDYEKGWKNVFKMRPGFVTKIVVRFAYIHTNATYGFDATKESGYVYHCHILDHEDNAMMRPLKMIK*