AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180003351.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003351.01.T01 MTR_1g059970 84.167 360 22 2 3 354 1 333 0.0 535
MsG0180003351.01.T01 MTR_1g059970 81.529 314 23 2 1 306 1 287 1.98e-155 438
MsG0180003351.01.T01 MTR_1g059970 42.000 100 56 2 254 352 117 215 1.06e-16 79.7
MsG0180003351.01.T01 MTR_3g005720 30.702 342 159 10 31 353 37 319 1.52e-33 127
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003351.01.T01 AT5G03880 64.038 317 79 2 45 353 49 338 5.28e-146 416
MsG0180003351.01.T01 AT4G10000 34.167 240 115 5 127 353 119 328 3.95e-35 131
MsG0180003351.01.T01 AT4G10000 34.167 240 115 5 127 353 119 328 3.95e-35 131

Find 96 sgRNAs with CRISPR-Local

Find 322 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTAATGCAAATTCTGTTTC+TGG 0.144741 1:+60996477 None:intergenic
CTCTTTCTCATTTGTTTCTA+AGG 0.160569 1:-60995200 MsG0180003351.01.T01:CDS
CACCGAAGCCACTTAAATTA+TGG 0.171419 1:-60992709 MsG0180003351.01.T01:CDS
CGAAAATTCGGGCCGTTTCT+TGG 0.227164 1:+60993927 None:intergenic
ATTTAAATTGAGTATTAATT+AGG 0.227247 1:-60991766 MsG0180003351.01.T01:three_prime_UTR
TAGAGAAATAGTTGCTGTTT+TGG 0.248195 1:-60993976 MsG0180003351.01.T01:CDS
GATAAGACTCTTGAGATTCT+TGG 0.262872 1:-60996337 MsG0180003351.01.T01:CDS
TAAGTATTGGTTGGAACATA+TGG 0.274384 1:-60993522 MsG0180003351.01.T01:intron
TGATATAGAATATTTCGTTT+TGG 0.299080 1:+60992152 None:intergenic
TTTGTTTGGGGAAATGGTTT+TGG 0.305124 1:+60996671 None:intergenic
TTGCTCTTTCGCTTTGCTAC+TGG 0.307870 1:-60996301 MsG0180003351.01.T01:CDS
ACAACCTTCGCACGAAAATT+CGG 0.315861 1:+60993915 None:intergenic
TTTCTCAATTCTCAGTTCAT+AGG 0.325348 1:-60996531 MsG0180003351.01.T01:CDS
GATCTTATTGCAAAGCGTTT+AGG 0.326743 1:+60996361 None:intergenic
AACATTTCTACCCCAGTGTT+TGG 0.327181 1:+60991987 None:intergenic
ATTGCAAAGCGTTTAGGTTC+AGG 0.332677 1:+60996367 None:intergenic
TACATCGAAACGCCAGTGTT+TGG 0.350374 1:+60993563 None:intergenic
GAAAATTCGGGCCGTTTCTT+GGG 0.373516 1:+60993928 None:intergenic
AATATTCTATATCAGAAAAC+TGG 0.378479 1:-60992143 MsG0180003351.01.T01:CDS
TCAGAAAACTGGACATTTCC+AGG 0.380253 1:-60992132 MsG0180003351.01.T01:intron
TTCAAAGGCAGTATAGTTGA+TGG 0.386470 1:+60991583 None:intergenic
TTTGTTCTGGAAAATGAAAC+AGG 0.388136 1:+60996508 None:intergenic
ACATCGAAACGCCAGTGTTT+GGG 0.395641 1:+60993564 None:intergenic
CTATAGGTTCTAGAAATTAC+TGG 0.404632 1:-60993135 MsG0180003351.01.T01:intron
AGTTTAAAAGCATATTCATT+TGG 0.406017 1:+60995166 None:intergenic
ACCGAAGCCACTTAAATTAT+GGG 0.408062 1:-60992708 MsG0180003351.01.T01:CDS
TTCAAATTCATAGATCTCAA+TGG 0.411901 1:+60994302 None:intergenic
ACGTGAAGTACTTGTGGAAT+TGG 0.413589 1:-60992334 MsG0180003351.01.T01:CDS
GCCCATAATTTAAGTGGCTT+CGG 0.419173 1:+60992707 None:intergenic
CAGACGAAATAATTAAGTAT+TGG 0.423833 1:-60993535 MsG0180003351.01.T01:CDS
CAACCTTCGCACGAAAATTC+GGG 0.424868 1:+60993916 None:intergenic
GGAGACAATCTTACCATGTA+AGG 0.426269 1:+60993867 None:intergenic
TAGATCTCAATGGGCTTCTC+TGG 0.426617 1:+60994312 None:intergenic
AATGTCAAAACACTCGCAAT+AGG 0.428399 1:+60993087 None:intergenic
CGGTTAGTCAGCAACGGTAT+TGG 0.428419 1:+60996710 None:intergenic
AGGCAAAGTGGTTGATCTAT+TGG 0.431916 1:+60996742 None:intergenic
ATTCCTCTTACTTTATCGCT+TGG 0.434103 1:-60993036 MsG0180003351.01.T01:CDS
TCAAATTCATAGATCTCAAT+GGG 0.434170 1:+60994303 None:intergenic
CTAATGCAAATTCTGTTTCT+GGG 0.441565 1:+60996478 None:intergenic
GTAAAAGAAACATCAAAGAT+AGG 0.441714 1:-60994342 MsG0180003351.01.T01:CDS
TCATATGCCCATAATTTAAG+TGG 0.444995 1:+60992701 None:intergenic
TTCTATCCTTGCCCAAGAAA+CGG 0.451827 1:-60993939 MsG0180003351.01.T01:CDS
CGAAATAATTAAGTATTGGT+TGG 0.452115 1:-60993531 MsG0180003351.01.T01:CDS
TCCAAGGTAATGACCATGGC+TGG 0.452936 1:-60996571 MsG0180003351.01.T01:exon
GTGGTTGATCTATTGGCTCT+TGG 0.456545 1:+60996749 None:intergenic
AATCCAAGCGATAAAGTAAG+AGG 0.457533 1:+60993033 None:intergenic
TTAAAAGCATATTCATTTGG+TGG 0.458779 1:+60995169 None:intergenic
ACATTCATTATGTGTTCTGC+AGG 0.459032 1:-60993069 MsG0180003351.01.T01:CDS
TCATTGTTTGTTGTCCTACA+AGG 0.460814 1:-60991606 MsG0180003351.01.T01:three_prime_UTR
CGTGCGAAGGTTGTTGAGAT+GGG 0.462625 1:-60993906 MsG0180003351.01.T01:CDS
ACTTAAATTATGGGCATATG+AGG 0.464685 1:-60992699 MsG0180003351.01.T01:intron
TTGCAAAGCGTTTAGGTTCA+GGG 0.467356 1:+60996368 None:intergenic
AGCTTAAAAGTTAGAACTGT+GGG 0.467439 1:-60991660 MsG0180003351.01.T01:three_prime_UTR
ATTGTACACAAGTTGAAGGC+TGG 0.468571 1:+60991550 None:intergenic
AGTATAGTTGATGGCCTTGT+AGG 0.472077 1:+60991592 None:intergenic
TGTTATGTCTGTCTCTGTCT+TGG 0.477532 1:-60991811 MsG0180003351.01.T01:three_prime_UTR
GTAATGACCATGGCTGGAAC+AGG 0.477850 1:-60996565 MsG0180003351.01.T01:CDS
TCGTGCGAAGGTTGTTGAGA+TGG 0.480686 1:-60993907 MsG0180003351.01.T01:CDS
ATAAATTGTACACAAGTTGA+AGG 0.484088 1:+60991546 None:intergenic
TAAAGTTACACAATGGTTTG+AGG 0.484867 1:-60991683 MsG0180003351.01.T01:three_prime_UTR
TGCAAAGCGTTTAGGTTCAG+GGG 0.490942 1:+60996369 None:intergenic
TTCGGGCCGTTTCTTGGGCA+AGG 0.492960 1:+60993933 None:intergenic
TTGGTGTTGCTTAACTGACT+TGG 0.498343 1:+60996768 None:intergenic
TCCAGCCATGGTCATTACCT+TGG 0.498674 1:+60996570 None:intergenic
CATGGTCATTACCTTGGAAA+AGG 0.508029 1:+60996576 None:intergenic
GGCTTCGGTGGTAACTTCGC+TGG 0.508413 1:+60992722 None:intergenic
TAAAACACAGTTCCCTTACA+TGG 0.513518 1:-60993880 MsG0180003351.01.T01:intron
TTGTACACAAGTTGAAGGCT+GGG 0.515189 1:+60991551 None:intergenic
AGTAGCAAAGCGAAAGAGCA+AGG 0.520076 1:+60996303 None:intergenic
ATTATGTGTTCTGCAGGCGA+TGG 0.526862 1:-60993063 MsG0180003351.01.T01:CDS
TTGGTGGTAATTTGTTTGGA+CGG 0.533505 1:+60996690 None:intergenic
AGATGTTTCTGTTTCTGACA+TGG 0.537859 1:+60996453 None:intergenic
TTGAGATCTATGAATTTGAA+AGG 0.546792 1:-60994299 MsG0180003351.01.T01:intron
CAGAGTTCCTGTTCCAGCCA+TGG 0.549073 1:+60996558 None:intergenic
AATCGTACGTGAAGTACTTG+TGG 0.549531 1:-60992340 MsG0180003351.01.T01:CDS
CATAATTTAAGTGGCTTCGG+TGG 0.555497 1:+60992710 None:intergenic
AAGGATAGAAAAGAATATCA+AGG 0.558191 1:+60993952 None:intergenic
TCAGCAACGGTATTGGAAAG+AGG 0.561051 1:+60996717 None:intergenic
CAAAGCGAAAGAGCAAGGGA+AGG 0.562207 1:+60996308 None:intergenic
TTTCATTGTAGTTGTGCTAG+GGG 0.574387 1:-60992179 MsG0180003351.01.T01:intron
TGGAAAGAGGGAAGGCAAAG+TGG 0.575219 1:+60996730 None:intergenic
CAGCAACGGTATTGGAAAGA+GGG 0.580571 1:+60996718 None:intergenic
TGTTGATGATGAAGTTGAAG+TGG 0.581369 1:+60996426 None:intergenic
AAAGCGAAAGAGCAAGGGAA+GGG 0.581925 1:+60996309 None:intergenic
TATTAGGTTGACCCAAACAC+TGG 0.591601 1:-60993575 MsG0180003351.01.T01:intron
TTTGGACGGTTAGTCAGCAA+CGG 0.602059 1:+60996704 None:intergenic
GTAGCAAAGCGAAAGAGCAA+GGG 0.611002 1:+60996304 None:intergenic
ACTTACTTGACAAGCAAATG+TGG 0.620078 1:+60992306 None:intergenic
AACGGTATTGGAAAGAGGGA+AGG 0.621072 1:+60996722 None:intergenic
GAGACAATCTTACCATGTAA+GGG 0.623184 1:+60993868 None:intergenic
GAGCTTAAAAGTTAGAACTG+TGG 0.623634 1:-60991661 MsG0180003351.01.T01:three_prime_UTR
TATGCTTGGTCGCATTACAA+AGG 0.624227 1:-60992892 MsG0180003351.01.T01:intron
GCAAAGCGTTTAGGTTCAGG+GGG 0.632306 1:+60996370 None:intergenic
TCAACAATAAAGTTACACAA+TGG 0.664926 1:-60991690 MsG0180003351.01.T01:three_prime_UTR
GCGAAGGTTGTTGAGATGGG+TGG 0.681372 1:-60993903 MsG0180003351.01.T01:CDS
TTTGGAAGATCCAAACACTG+GGG 0.767397 1:-60991997 MsG0180003351.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTCAAATTGTATATAA+CGG + Chr1:60993794-60993813 None:intergenic 10.0%
!! ATTTAAATTGAGTATTAATT+AGG - Chr1:60996526-60996545 MsG0180003351.01.T01:CDS 10.0%
!! TATACATTAATTTCAATATT+TGG - Chr1:60995468-60995487 MsG0180003351.01.T01:intron 10.0%
!! AAACAATGAATACTTATATT+AGG + Chr1:60995523-60995542 None:intergenic 15.0%
!! ATAACAATTGAACAAAATTA+TGG + Chr1:60992311-60992330 None:intergenic 15.0%
!! TACAAAAGATAAATATTGAA+CGG + Chr1:60994032-60994051 None:intergenic 15.0%
!! TATAACTTATAATCTAGTAA+TGG + Chr1:60995676-60995695 None:intergenic 15.0%
!! TTTCATATGAATCAATAATT+CGG + Chr1:60992917-60992936 None:intergenic 15.0%
!!! AATAACAATTTTCTTGTATT+AGG - Chr1:60994701-60994720 MsG0180003351.01.T01:intron 15.0%
!!! AATTTTAGTACTTATGTTAA+TGG - Chr1:60993223-60993242 MsG0180003351.01.T01:intron 15.0%
!!! ATTATTGATTCATATGAAAA+TGG - Chr1:60992918-60992937 MsG0180003351.01.T01:intron 15.0%
!!! TTTTATTTTTGTTAAGAAAG+TGG - Chr1:60992824-60992843 MsG0180003351.01.T01:intron 15.0%
!!! TTTTTAAGGTTTTTTTGTTT+GGG + Chr1:60991637-60991656 None:intergenic 15.0%
!! AAATGAAAAATGAAATACAG+AGG + Chr1:60993875-60993894 None:intergenic 20.0%
!! AATATTAAATAACCATCACA+AGG + Chr1:60994663-60994682 None:intergenic 20.0%
!! AATATTCTATATCAGAAAAC+TGG - Chr1:60996149-60996168 MsG0180003351.01.T01:intron 20.0%
!! ACAAAAGATAAATATTGAAC+GGG + Chr1:60994031-60994050 None:intergenic 20.0%
!! ACTAAACTAAGAAATACATA+TGG + Chr1:60996030-60996049 None:intergenic 20.0%
!! ACTTCTATTGTATGTTAATT+AGG - Chr1:60993319-60993338 MsG0180003351.01.T01:intron 20.0%
!! AGAAAAAAATGATCAAATAG+AGG - Chr1:60996568-60996587 MsG0180003351.01.T01:exon 20.0%
!! ATGTGTATATTTGCATAAAA+TGG + Chr1:60996199-60996218 None:intergenic 20.0%
!! CTAGATTATAAGTTATAGAT+TGG - Chr1:60995679-60995698 MsG0180003351.01.T01:intron 20.0%
!! CTATTCTTTAATCTTCATAA+TGG + Chr1:60994092-60994111 None:intergenic 20.0%
!! GTAATGTTACATTAACAATA+TGG - Chr1:60994049-60994068 MsG0180003351.01.T01:intron 20.0%
!! TAATGCAAAAAGATAAACAA+AGG + Chr1:60993465-60993484 None:intergenic 20.0%
!! TATTTACAATAAGAAGAGAA+TGG + Chr1:60992050-60992069 None:intergenic 20.0%
!! TGTGATGGTTATTTAATATT+TGG - Chr1:60994663-60994682 MsG0180003351.01.T01:intron 20.0%
!! TTGAAAATACTGAAAATTGA+TGG - Chr1:60993679-60993698 MsG0180003351.01.T01:intron 20.0%
!!! AAGTTTTATAAGCTCTATTT+AGG - Chr1:60994921-60994940 MsG0180003351.01.T01:intron 20.0%
!!! AAGTTTTTTTTTTGGAAACT+TGG + Chr1:60992583-60992602 None:intergenic 20.0%
!!! AATAACATGTGTTAGATTTT+AGG - Chr1:60994853-60994872 MsG0180003351.01.T01:intron 20.0%
!!! ACTTATAATTGTTTTGAATG+AGG - Chr1:60992215-60992234 MsG0180003351.01.T01:intron 20.0%
!!! AGTATTTTACCACATAAAAA+GGG - Chr1:60995037-60995056 MsG0180003351.01.T01:intron 20.0%
!!! AGTTTAAAAGCATATTCATT+TGG + Chr1:60993129-60993148 None:intergenic 20.0%
!!! AGTTTCTTGTTATGATTTTT+TGG - Chr1:60994476-60994495 MsG0180003351.01.T01:intron 20.0%
!!! ATTTCTTAGTTTAGTCTTAT+TGG - Chr1:60996035-60996054 MsG0180003351.01.T01:intron 20.0%
!!! CTCAATTTAAATTTTACAAG+AGG + Chr1:60996518-60996537 None:intergenic 20.0%
!!! GATATAGAATATTTCGTTTT+GGG + Chr1:60996142-60996161 None:intergenic 20.0%
!!! GTTTCTTGTTATGATTTTTT+GGG - Chr1:60994477-60994496 MsG0180003351.01.T01:intron 20.0%
!!! GTTTTTAAGGTTTTTTTGTT+TGG + Chr1:60991638-60991657 None:intergenic 20.0%
!!! TCATTGTTTTTGAAATTTCA+GGG - Chr1:60995534-60995553 MsG0180003351.01.T01:intron 20.0%
!!! TGATATAGAATATTTCGTTT+TGG + Chr1:60996143-60996162 None:intergenic 20.0%
!!! TTCATTGTTTTTGAAATTTC+AGG - Chr1:60995533-60995552 MsG0180003351.01.T01:intron 20.0%
!!! TTTTAAGGTTTTTTTGTTTG+GGG + Chr1:60991636-60991655 None:intergenic 20.0%
!!! TTTTTTTGTTAATGTGTCTA+CGG - Chr1:60992126-60992145 MsG0180003351.01.T01:intron 20.0%
! AAAAGAATTAAATTTCTGCC+AGG + Chr1:60993043-60993062 None:intergenic 25.0%
! AAAGCAGAAAGTGATTAAAA+TGG + Chr1:60993661-60993680 None:intergenic 25.0%
! AACAATCAACAAAACAAAGT+TGG - Chr1:60994452-60994471 MsG0180003351.01.T01:intron 25.0%
! AACATACAATAGAAGTGATA+AGG + Chr1:60993315-60993334 None:intergenic 25.0%
! AAGGATAGAAAAGAATATCA+AGG + Chr1:60994343-60994362 None:intergenic 25.0%
! AATGGAATCAATAAAATACC+TGG + Chr1:60996181-60996200 None:intergenic 25.0%
! ACCATCAATATTAACATCAT+CGG + Chr1:60996255-60996274 None:intergenic 25.0%
! ACTTATAATCTAGTAATGGT+TGG + Chr1:60995672-60995691 None:intergenic 25.0%
! AGTTTCCAAATGATATTACT+AGG - Chr1:60993624-60993643 MsG0180003351.01.T01:intron 25.0%
! ATAAGAAGAGAATGGAAATT+AGG + Chr1:60992042-60992061 None:intergenic 25.0%
! ATCAATGATACGATTTATTC+AGG - Chr1:60995913-60995932 MsG0180003351.01.T01:intron 25.0%
! ATGAGTAGTATCATTATCAA+TGG + Chr1:60992341-60992360 None:intergenic 25.0%
! ATTACAAAGTGGTTATATCA+AGG - Chr1:60995835-60995854 MsG0180003351.01.T01:intron 25.0%
! CAGACGAAATAATTAAGTAT+TGG - Chr1:60994757-60994776 MsG0180003351.01.T01:intron 25.0%
! GAAATTAATGCAAAACTATC+CGG - Chr1:60994549-60994568 MsG0180003351.01.T01:intron 25.0%
! GTAAAAGAAACATCAAAGAT+AGG - Chr1:60993950-60993969 MsG0180003351.01.T01:CDS 25.0%
! TAGATAGCTCAAAAATAAGT+TGG + Chr1:60992796-60992815 None:intergenic 25.0%
! TCAAATTCATAGATCTCAAT+GGG + Chr1:60993992-60994011 None:intergenic 25.0%
! TCAACAATAAAGTTACACAA+TGG - Chr1:60996602-60996621 MsG0180003351.01.T01:five_prime_UTR 25.0%
! TCAATGATACGATTTATTCA+GGG - Chr1:60995914-60995933 MsG0180003351.01.T01:intron 25.0%
! TTCAAATTCATAGATCTCAA+TGG + Chr1:60993993-60994012 None:intergenic 25.0%
! TTCTTTAATAATGTTCTTCG+TGG - Chr1:60994134-60994153 MsG0180003351.01.T01:intron 25.0%
! TTGAGATCTATGAATTTGAA+AGG - Chr1:60993993-60994012 MsG0180003351.01.T01:intron 25.0%
!! AATACTGAAAATTGATGGTT+TGG - Chr1:60993684-60993703 MsG0180003351.01.T01:intron 25.0%
!! ATAAATTGTACACAAGTTGA+AGG + Chr1:60996749-60996768 None:intergenic 25.0%
!! ATACTCAATTCTGAAAAGTA+TGG + Chr1:60995022-60995041 None:intergenic 25.0%
!! CAATGAGATTTAACTTACAA+AGG - Chr1:60995495-60995514 MsG0180003351.01.T01:intron 25.0%
!! GAATATGCTTTTAAACTTTC+TGG - Chr1:60993132-60993151 MsG0180003351.01.T01:CDS 25.0%
!! GAGTATTTTACCACATAAAA+AGG - Chr1:60995036-60995055 MsG0180003351.01.T01:intron 25.0%
!! GATGTTAATATTGATGGTTA+TGG - Chr1:60996257-60996276 MsG0180003351.01.T01:intron 25.0%
!! GTATTTTACCACATAAAAAG+GGG - Chr1:60995038-60995057 MsG0180003351.01.T01:intron 25.0%
!! GTATTTTTCTCACAATGTTA+TGG + Chr1:60995111-60995130 None:intergenic 25.0%
!! GTTATATCAAGGCTTTTTAT+AGG - Chr1:60995846-60995865 MsG0180003351.01.T01:intron 25.0%
!! TATTTTACCACATAAAAAGG+GGG - Chr1:60995039-60995058 MsG0180003351.01.T01:intron 25.0%
!! TGAAATTGTTAGTCTAACAA+AGG + Chr1:60992772-60992791 None:intergenic 25.0%
!! TTAAAAGCATATTCATTTGG+TGG + Chr1:60993126-60993145 None:intergenic 25.0%
!! TTTATCGCTTGGATTTTTAA+CGG - Chr1:60995267-60995286 MsG0180003351.01.T01:intron 25.0%
!! TTTGCGTATATTTTCTTTCA+TGG + Chr1:60992709-60992728 None:intergenic 25.0%
!! TTTTACAAGAGGAAAAATGA+AGG + Chr1:60996507-60996526 None:intergenic 25.0%
!!! AGTAATTTCTAGAACCTATA+GGG + Chr1:60995158-60995177 None:intergenic 25.0%
!!! AGTTTTTGTGTGTGTTTTTA+AGG + Chr1:60991651-60991670 None:intergenic 25.0%
!!! ATTAGTTTTTATCACCAGAA+AGG - Chr1:60995311-60995330 MsG0180003351.01.T01:intron 25.0%
!!! ATTGTTTTGAATGAGGTATT+TGG - Chr1:60992222-60992241 MsG0180003351.01.T01:intron 25.0%
!!! CGAAATAATTAAGTATTGGT+TGG - Chr1:60994761-60994780 MsG0180003351.01.T01:intron 25.0%
!!! GTTTAATATTTTGACTGTAC+AGG - Chr1:60994292-60994311 MsG0180003351.01.T01:intron 25.0%
!!! TTGTTTTGTTGATTGTTTTG+AGG + Chr1:60994449-60994468 None:intergenic 25.0%
!!! TTTTTTGTTAATGTGTCTAC+GGG - Chr1:60992127-60992146 MsG0180003351.01.T01:intron 25.0%
AAAATGAAATACAGAGGAAG+CGG + Chr1:60993869-60993888 None:intergenic 30.0%
ACCGATGATGTTAATATTGA+TGG - Chr1:60996251-60996270 MsG0180003351.01.T01:intron 30.0%
ACTTAAATTATGGGCATATG+AGG - Chr1:60995593-60995612 MsG0180003351.01.T01:intron 30.0%
AGCTTAAAAGTTAGAACTGT+GGG - Chr1:60996632-60996651 MsG0180003351.01.T01:five_prime_UTR 30.0%
ATAATGTGAAGATAAGGCAT+GGG - Chr1:60992651-60992670 MsG0180003351.01.T01:intron 30.0%
ATGGATTCATAAACAACAAC+CGG + Chr1:60994571-60994590 None:intergenic 30.0%
ATTTGACATGCTTGAAAACA+TGG - Chr1:60995745-60995764 MsG0180003351.01.T01:intron 30.0%
CAAATGATATTACTAGGAAG+AGG - Chr1:60993630-60993649 MsG0180003351.01.T01:intron 30.0%
CCTTGTTAACATTAGTAATG+CGG - Chr1:60993913-60993932 MsG0180003351.01.T01:CDS 30.0%
CTATTTAGGTGATATCTTCT+AGG - Chr1:60994935-60994954 MsG0180003351.01.T01:intron 30.0%
CTCTTCCTAGTAATATCATT+TGG + Chr1:60993632-60993651 None:intergenic 30.0%
GAATTCGTTCATTAAGCATT+AGG + Chr1:60995646-60995665 None:intergenic 30.0%
GAGCATATAATGTGAAGATA+AGG - Chr1:60992645-60992664 MsG0180003351.01.T01:intron 30.0%
TAAAGTTACACAATGGTTTG+AGG - Chr1:60996609-60996628 MsG0180003351.01.T01:five_prime_UTR 30.0%
TAATAATGTTCTTCGTGGAT+CGG - Chr1:60994139-60994158 MsG0180003351.01.T01:intron 30.0%
TATAATGTGAAGATAAGGCA+TGG - Chr1:60992650-60992669 MsG0180003351.01.T01:intron 30.0%
TCATATGCCCATAATTTAAG+TGG + Chr1:60995594-60995613 None:intergenic 30.0%
TCTAATGCAAATTCTGTTTC+TGG + Chr1:60991818-60991837 None:intergenic 30.0%
TGAGCGTCAAAATAAAAGAA+TGG + Chr1:60993166-60993185 None:intergenic 30.0%
TGAGTAAAGTGATTACAAAG+TGG - Chr1:60995824-60995843 MsG0180003351.01.T01:intron 30.0%
TTTAATCTTCATAATGGCTG+TGG + Chr1:60994086-60994105 None:intergenic 30.0%
TTTCTCAATTCTCAGTTCAT+AGG - Chr1:60991761-60991780 MsG0180003351.01.T01:three_prime_UTR 30.0%
! ACATCCAAAGAGATTTTCTT+TGG + Chr1:60993559-60993578 None:intergenic 30.0%
! ACTCGCAATAGGATTATTTT+TGG + Chr1:60995197-60995216 None:intergenic 30.0%
! AGCAAACATTCTTTTTGTTG+TGG - Chr1:60994270-60994289 MsG0180003351.01.T01:intron 30.0%
! ATCTCTTTGGATGTCTTATT+TGG - Chr1:60993565-60993584 MsG0180003351.01.T01:CDS 30.0%
! ATTTTCATTGTAGTTGTGCT+AGG - Chr1:60996111-60996130 MsG0180003351.01.T01:intron 30.0%
! CTAATGCAAATTCTGTTTCT+GGG + Chr1:60991817-60991836 None:intergenic 30.0%
! CTCATACACATGTTGTTTAT+TGG + Chr1:60994984-60995003 None:intergenic 30.0%
! TATTTCCCTTTGCTATGTAA+TGG - Chr1:60995435-60995454 MsG0180003351.01.T01:intron 30.0%
! TCTGTGTAATAGTATTTCTG+TGG - Chr1:60993739-60993758 MsG0180003351.01.T01:intron 30.0%
! TTAGCAACTGTTGCTTATTA+TGG - Chr1:60993425-60993444 MsG0180003351.01.T01:intron 30.0%
! TTCAGTAAGTGATTTTTGTG+AGG - Chr1:60996431-60996450 MsG0180003351.01.T01:CDS 30.0%
! TTTTCATTGTAGTTGTGCTA+GGG - Chr1:60996112-60996131 MsG0180003351.01.T01:intron 30.0%
!! ATCTTACAAACCGATTTTGT+AGG + Chr1:60994890-60994909 None:intergenic 30.0%
!! CAAAATCGGTTTGTAAGATT+AGG - Chr1:60994891-60994910 MsG0180003351.01.T01:intron 30.0%
!! CAGTAATTTCTAGAACCTAT+AGG + Chr1:60995159-60995178 None:intergenic 30.0%
!! CTATAGGTTCTAGAAATTAC+TGG - Chr1:60995157-60995176 MsG0180003351.01.T01:intron 30.0%
!! CTCTTTCTCATTTGTTTCTA+AGG - Chr1:60993092-60993111 MsG0180003351.01.T01:CDS 30.0%
!! TAAGTATTGGTTGGAACATA+TGG - Chr1:60994770-60994789 MsG0180003351.01.T01:intron 30.0%
!! TCTTACAAACCGATTTTGTA+GGG + Chr1:60994889-60994908 None:intergenic 30.0%
!! TTTGTTCTGGAAAATGAAAC+AGG + Chr1:60991787-60991806 None:intergenic 30.0%
!!! GAACAGTTTCTTTTGTTGTT+GGG + Chr1:60991697-60991716 None:intergenic 30.0%
!!! TAGAGAAATAGTTGCTGTTT+TGG - Chr1:60994316-60994335 MsG0180003351.01.T01:CDS 30.0%
!!! TTCTTTTATTTTGACGCTCA+TGG - Chr1:60993166-60993185 MsG0180003351.01.T01:intron 30.0%
AAACTAATGACAGTGATGTC+AGG + Chr1:60995299-60995318 None:intergenic 35.0%
AAATTATGGGCATATGAGGT+TGG - Chr1:60995597-60995616 MsG0180003351.01.T01:intron 35.0%
AACATTAGTAATGCGGTTTC+AGG - Chr1:60993920-60993939 MsG0180003351.01.T01:CDS 35.0%
AAGATAAGGCATGGGATAAA+TGG - Chr1:60992659-60992678 MsG0180003351.01.T01:intron 35.0%
AAGCAGTTTATCTTAGTGAC+TGG + Chr1:60994525-60994544 None:intergenic 35.0%
AATAATGTTCTTCGTGGATC+GGG - Chr1:60994140-60994159 MsG0180003351.01.T01:intron 35.0%
AATCCAAGCGATAAAGTAAG+AGG + Chr1:60995262-60995281 None:intergenic 35.0%
AATGATACAGTTCACCTTTC+TGG + Chr1:60995328-60995347 None:intergenic 35.0%
AATGTCAAAACACTCGCAAT+AGG + Chr1:60995208-60995227 None:intergenic 35.0%
ACATTCATTATGTGTTCTGC+AGG - Chr1:60995223-60995242 MsG0180003351.01.T01:intron 35.0%
ACCGAAGCCACTTAAATTAT+GGG - Chr1:60995584-60995603 MsG0180003351.01.T01:intron 35.0%
ACTTACTTGACAAGCAAATG+TGG + Chr1:60995989-60996008 None:intergenic 35.0%
ATAATCTAGTAATGGTTGGC+TGG + Chr1:60995668-60995687 None:intergenic 35.0%
ATTCCTCTTACTTTATCGCT+TGG - Chr1:60995256-60995275 MsG0180003351.01.T01:intron 35.0%
ATTTACTGAGATTGTTCTCC+TGG - Chr1:60993022-60993041 MsG0180003351.01.T01:intron 35.0%
CATGTTGTCTATGCATGAAA+AGG - Chr1:60993531-60993550 MsG0180003351.01.T01:CDS 35.0%
CCGCATTACTAATGTTAACA+AGG + Chr1:60993916-60993935 None:intergenic 35.0%
CTAACTCAACCCTACAAAAT+CGG - Chr1:60994877-60994896 MsG0180003351.01.T01:intron 35.0%
GAGACAATCTTACCATGTAA+GGG + Chr1:60994427-60994446 None:intergenic 35.0%
GAGCTTAAAAGTTAGAACTG+TGG - Chr1:60996631-60996650 MsG0180003351.01.T01:five_prime_UTR 35.0%
GATAAGACTCTTGAGATTCT+TGG - Chr1:60991955-60991974 MsG0180003351.01.T01:CDS 35.0%
GCGTCAAAATAAAAGAATGG+AGG + Chr1:60993163-60993182 None:intergenic 35.0%
GGTTCCAAAGAAAATCTCTT+TGG - Chr1:60993552-60993571 MsG0180003351.01.T01:CDS 35.0%
GTGTTTGGATCTTCCAAAAA+AGG + Chr1:60996293-60996312 None:intergenic 35.0%
GTTGTGAAAATGGAAACTCA+AGG - Chr1:60992098-60992117 MsG0180003351.01.T01:intron 35.0%
TAAAACACAGTTCCCTTACA+TGG - Chr1:60994412-60994431 MsG0180003351.01.T01:intron 35.0%
TAAAGTGAGTTAACCACCAA+GGG - Chr1:60992370-60992389 MsG0180003351.01.T01:intron 35.0%
TCACATTATATGCTCAACGT+AGG + Chr1:60992640-60992659 None:intergenic 35.0%
TCCTTCCATTACATAGCAAA+GGG + Chr1:60995443-60995462 None:intergenic 35.0%
TCTTTACAAGCTTCAAGACA+TGG - Chr1:60996219-60996238 MsG0180003351.01.T01:intron 35.0%
TGATACAGTCAGTTACTTAC+TGG + Chr1:60995897-60995916 None:intergenic 35.0%
TTCAAAGGCAGTATAGTTGA+TGG + Chr1:60996712-60996731 None:intergenic 35.0%
TTCCTTCCATTACATAGCAA+AGG + Chr1:60995444-60995463 None:intergenic 35.0%
TTGGGCATCTTGTAATAGAT+GGG - Chr1:60994495-60994514 MsG0180003351.01.T01:intron 35.0%
TTTCATTGTAGTTGTGCTAG+GGG - Chr1:60996113-60996132 MsG0180003351.01.T01:intron 35.0%
TTTGGGCATCTTGTAATAGA+TGG - Chr1:60994494-60994513 MsG0180003351.01.T01:intron 35.0%
! AAGAAACTGTTCCTTTTCCA+AGG - Chr1:60991705-60991724 MsG0180003351.01.T01:three_prime_UTR 35.0%
! AATGATTCCCCCTTTTTATG+TGG + Chr1:60995049-60995068 None:intergenic 35.0%
! ACGCTTTTGTGTTGTGAAAA+TGG - Chr1:60992088-60992107 MsG0180003351.01.T01:intron 35.0%
! AGAGCATTAGTAATCCCTAT+AGG - Chr1:60995141-60995160 MsG0180003351.01.T01:intron 35.0%
! ATAGAAGTGATAAGGTGCTT+TGG + Chr1:60993307-60993326 None:intergenic 35.0%
! GATCTTATTGCAAAGCGTTT+AGG + Chr1:60991934-60991953 None:intergenic 35.0%
! GATTTTTGTGAGGCTTATGA+GGG - Chr1:60996441-60996460 MsG0180003351.01.T01:CDS 35.0%
! GCTGGGAAAATCATTTTCAA+AGG + Chr1:60996727-60996746 None:intergenic 35.0%
! GGCACAAACTAATATTGACT+AGG + Chr1:60992161-60992180 None:intergenic 35.0%
! TAGAAGTGATAAGGTGCTTT+GGG + Chr1:60993306-60993325 None:intergenic 35.0%
! TATTGATGGTTATGGTTCAC+AGG - Chr1:60996265-60996284 MsG0180003351.01.T01:intron 35.0%
! TGATTTTTGTGAGGCTTATG+AGG - Chr1:60996440-60996459 MsG0180003351.01.T01:CDS 35.0%
! TTTGTTTGGGGAAATGGTTT+TGG + Chr1:60991624-60991643 None:intergenic 35.0%
!! AGATGTTTCTGTTTCTGACA+TGG + Chr1:60991842-60991861 None:intergenic 35.0%
!! GGAACAGTTTCTTTTGTTGT+TGG + Chr1:60991698-60991717 None:intergenic 35.0%
!! GGTATGGTCTATTGTTTTGT+AGG - Chr1:60994186-60994205 MsG0180003351.01.T01:intron 35.0%
!! GTTTTTCTCTGGCTTCAATT+GGG - Chr1:60992500-60992519 MsG0180003351.01.T01:intron 35.0%
!! TCATTGTTTGTTGTCCTACA+AGG - Chr1:60996686-60996705 MsG0180003351.01.T01:five_prime_UTR 35.0%
!! TGTTGATGATGAAGTTGAAG+TGG + Chr1:60991869-60991888 None:intergenic 35.0%
!! TTGGTGGTAATTTGTTTGGA+CGG + Chr1:60991605-60991624 None:intergenic 35.0%
!! TTTTGGAAGATCCAAACACT+GGG - Chr1:60996294-60996313 MsG0180003351.01.T01:CDS 35.0%
!! TTTTTGGAAGATCCAAACAC+TGG - Chr1:60996293-60996312 MsG0180003351.01.T01:CDS 35.0%
!!! GGTTTTGGTGGTAATTTGTT+TGG + Chr1:60991609-60991628 None:intergenic 35.0%
!!! GGTTTTTTTGTTTGGGGAAA+TGG + Chr1:60991630-60991649 None:intergenic 35.0%
!!! GTATTTCTGTGGTTTTAGTG+TGG - Chr1:60993750-60993769 MsG0180003351.01.T01:intron 35.0%
!!! TTTTTGCAGTCATTGACTTG+CGG - Chr1:60995371-60995390 MsG0180003351.01.T01:intron 35.0%
AACATTTCTACCCCAGTGTT+TGG + Chr1:60996308-60996327 None:intergenic 40.0%
AATCGTTGTAAGATGCGAGA+TGG + Chr1:60994590-60994609 None:intergenic 40.0%
ACAACCTTCGCACGAAAATT+CGG + Chr1:60994380-60994399 None:intergenic 40.0%
AGGCAAAGTGGTTGATCTAT+TGG + Chr1:60991553-60991572 None:intergenic 40.0%
ATTGAAGCCAGAGAAAAACC+TGG + Chr1:60992499-60992518 None:intergenic 40.0%
CACCGAAGCCACTTAAATTA+TGG - Chr1:60995583-60995602 MsG0180003351.01.T01:intron 40.0%
CATAATTTAAGTGGCTTCGG+TGG + Chr1:60995585-60995604 None:intergenic 40.0%
CATGGTCATTACCTTGGAAA+AGG + Chr1:60991719-60991738 None:intergenic 40.0%
GACCATACCTTTCGACAAAA+TGG + Chr1:60994175-60994194 None:intergenic 40.0%
GCCCATAATTTAAGTGGCTT+CGG + Chr1:60995588-60995607 None:intergenic 40.0%
GGAGACAATCTTACCATGTA+AGG + Chr1:60994428-60994447 None:intergenic 40.0%
GTAAAGTGAGTTAACCACCA+AGG - Chr1:60992369-60992388 MsG0180003351.01.T01:intron 40.0%
GTCGCATTGTCTTGTAGATA+TGG + Chr1:60992977-60992996 None:intergenic 40.0%
TATGCTTGGTCGCATTACAA+AGG - Chr1:60995400-60995419 MsG0180003351.01.T01:intron 40.0%
TCAGAAAACTGGACATTTCC+AGG - Chr1:60996160-60996179 MsG0180003351.01.T01:intron 40.0%
TCATTAAGCATTAGGATGCG+TGG + Chr1:60995638-60995657 None:intergenic 40.0%
TGACACATGAATGATCACCT+GGG + Chr1:60992464-60992483 None:intergenic 40.0%
TGTTATGTCTGTCTCTGTCT+TGG - Chr1:60996481-60996500 MsG0180003351.01.T01:CDS 40.0%
TTCTATCCTTGCCCAAGAAA+CGG - Chr1:60994353-60994372 MsG0180003351.01.T01:CDS 40.0%
TTGCTTATCACACCTTGTGA+TGG - Chr1:60994648-60994667 MsG0180003351.01.T01:intron 40.0%
TTTGGAAGATCCAAACACTG+GGG - Chr1:60996295-60996314 MsG0180003351.01.T01:CDS 40.0%
! AATCGTACGTGAAGTACTTG+TGG - Chr1:60995952-60995971 MsG0180003351.01.T01:intron 40.0%
! ACGTGAAGTACTTGTGGAAT+TGG - Chr1:60995958-60995977 MsG0180003351.01.T01:intron 40.0%
! AGAAGTGATAAGGTGCTTTG+GGG + Chr1:60993305-60993324 None:intergenic 40.0%
! ATTGCAAAGCGTTTAGGTTC+AGG + Chr1:60991928-60991947 None:intergenic 40.0%
! ATTGTACACAAGTTGAAGGC+TGG + Chr1:60996745-60996764 None:intergenic 40.0%
! CTACTGGAGTTTTCGTTTCT+GGG - Chr1:60992007-60992026 MsG0180003351.01.T01:CDS 40.0%
! CTTTTCCAAGGTAATGACCA+TGG - Chr1:60991717-60991736 MsG0180003351.01.T01:three_prime_UTR 40.0%
! GTCAATACCAGGTTTTTCTC+TGG - Chr1:60992489-60992508 MsG0180003351.01.T01:intron 40.0%
! GTCCATTTTGTCGAAAGGTA+TGG - Chr1:60994170-60994189 MsG0180003351.01.T01:intron 40.0%
! TCACGTACGATTTTGCAGAA+AGG + Chr1:60995944-60995963 None:intergenic 40.0%
! TCCCTTTGCTATGTAATGGA+AGG - Chr1:60995439-60995458 MsG0180003351.01.T01:intron 40.0%
! TTGCAAAGCGTTTAGGTTCA+GGG + Chr1:60991927-60991946 None:intergenic 40.0%
! TTGTACACAAGTTGAAGGCT+GGG + Chr1:60996744-60996763 None:intergenic 40.0%
!! AGTATAGTTGATGGCCTTGT+AGG + Chr1:60996703-60996722 None:intergenic 40.0%
!! ATGAGAAAGAGTACCTGCAA+AGG + Chr1:60993083-60993102 None:intergenic 40.0%
!! GAGAAAAACCTGGTATTGAC+TGG + Chr1:60992489-60992508 None:intergenic 40.0%
!! GGTTTTTCTCTGGCTTCAAT+TGG - Chr1:60992499-60992518 MsG0180003351.01.T01:intron 40.0%
!! TATTAGGTTGACCCAAACAC+TGG - Chr1:60994717-60994736 MsG0180003351.01.T01:intron 40.0%
!! TTGGTGTTGCTTAACTGACT+TGG + Chr1:60991527-60991546 None:intergenic 40.0%
!!! CAGTTTCTTTTGTTGTTGGG+AGG + Chr1:60991694-60991713 None:intergenic 40.0%
!!! TGGTTCACAGGTACCTTTTT+TGG - Chr1:60996277-60996296 MsG0180003351.01.T01:intron 40.0%
AAAGCGAAAGAGCAAGGGAA+GGG + Chr1:60991986-60992005 None:intergenic 45.0%
ACACATGAATGATCACCTGG+GGG + Chr1:60992462-60992481 None:intergenic 45.0%
ACATCGAAACGCCAGTGTTT+GGG + Chr1:60994731-60994750 None:intergenic 45.0%
AGCAGGGATTGGAGAGATAA+TGG + Chr1:60993278-60993297 None:intergenic 45.0%
AGTAGCAAAGCGAAAGAGCA+AGG + Chr1:60991992-60992011 None:intergenic 45.0%
ATTATGTGTTCTGCAGGCGA+TGG - Chr1:60995229-60995248 MsG0180003351.01.T01:intron 45.0%
CAACCTTCGCACGAAAATTC+GGG + Chr1:60994379-60994398 None:intergenic 45.0%
CACAACAGTGACTTAGACAG+TGG - Chr1:60993378-60993397 MsG0180003351.01.T01:intron 45.0%
CAGGTGATCATTCATGTGTC+AGG - Chr1:60992463-60992482 MsG0180003351.01.T01:intron 45.0%
CTGACACATGAATGATCACC+TGG + Chr1:60992465-60992484 None:intergenic 45.0%
GAAAATTCGGGCCGTTTCTT+GGG + Chr1:60994367-60994386 None:intergenic 45.0%
GACACATGAATGATCACCTG+GGG + Chr1:60992463-60992482 None:intergenic 45.0%
GTAGCAAAGCGAAAGAGCAA+GGG + Chr1:60991991-60992010 None:intergenic 45.0%
TACATCGAAACGCCAGTGTT+TGG + Chr1:60994732-60994751 None:intergenic 45.0%
TAGAACCTAACCACCTAGAG+AGG + Chr1:60992437-60992456 None:intergenic 45.0%
TGTGCCTTTGTGCATAGACT+TGG - Chr1:60992175-60992194 MsG0180003351.01.T01:intron 45.0%
TTAGCAGTGTGATCCTCTCT+AGG - Chr1:60992421-60992440 MsG0180003351.01.T01:intron 45.0%
TTGCTCTTTCGCTTTGCTAC+TGG - Chr1:60991991-60992010 MsG0180003351.01.T01:CDS 45.0%
! AACGGTATTGGAAAGAGGGA+AGG + Chr1:60991573-60991592 None:intergenic 45.0%
! CAGCAACGGTATTGGAAAGA+GGG + Chr1:60991577-60991596 None:intergenic 45.0%
! CAGCTGTCCATTTTGTCGAA+AGG - Chr1:60994165-60994184 MsG0180003351.01.T01:intron 45.0%
! GCATATGGTAGTGTAGGCTT+GGG - Chr1:60992396-60992415 MsG0180003351.01.T01:intron 45.0%
! GCTACTGGAGTTTTCGTTTC+TGG - Chr1:60992006-60992025 MsG0180003351.01.T01:CDS 45.0%
! GGTTCAGGGGGTTTGAAATT+TGG + Chr1:60991913-60991932 None:intergenic 45.0%
! TAGATCTCAATGGGCTTCTC+TGG + Chr1:60993983-60994002 None:intergenic 45.0%
! TCAGCAACGGTATTGGAAAG+AGG + Chr1:60991578-60991597 None:intergenic 45.0%
! TCAGGGGGTTTGAAATTTGG+AGG + Chr1:60991910-60991929 None:intergenic 45.0%
! TGCAAAGCGTTTAGGTTCAG+GGG + Chr1:60991926-60991945 None:intergenic 45.0%
! TTTGGACGGTTAGTCAGCAA+CGG + Chr1:60991591-60991610 None:intergenic 45.0%
!! ACTTGCGGTTTTGCTATGCT+TGG - Chr1:60995386-60995405 MsG0180003351.01.T01:intron 45.0%
!! GCTTTTTGTTGTGCCTTTGC+AGG - Chr1:60993067-60993086 MsG0180003351.01.T01:CDS 45.0%
!! GTGGTTGATCTATTGGCTCT+TGG + Chr1:60991546-60991565 None:intergenic 45.0%
!!! GTTTGGGGAAATGGTTTTGG+TGG + Chr1:60991621-60991640 None:intergenic 45.0%
!!! TCTGGGCAGTAGTTTTGTTC+TGG + Chr1:60991800-60991819 None:intergenic 45.0%
!!! ATTTTATAAAGTTTTTTTTT+TGG + Chr1:60992591-60992610 None:intergenic 5.0%
CAAAGCGAAAGAGCAAGGGA+AGG + Chr1:60991987-60992006 None:intergenic 50.0%
CACTACCATATGCCAACCCT+TGG + Chr1:60992389-60992408 None:intergenic 50.0%
CCAGCCAAGTCTATGCACAA+AGG + Chr1:60992182-60992201 None:intergenic 50.0%
CCTTTGTGCATAGACTTGGC+TGG - Chr1:60992179-60992198 MsG0180003351.01.T01:intron 50.0%
CGAAAATTCGGGCCGTTTCT+TGG + Chr1:60994368-60994387 None:intergenic 50.0%
CGTGCGAAGGTTGTTGAGAT+GGG - Chr1:60994386-60994405 MsG0180003351.01.T01:intron 50.0%
GAAACTTGGTATCCGACCCA+AGG + Chr1:60992569-60992588 None:intergenic 50.0%
GTAATGACCATGGCTGGAAC+AGG - Chr1:60991727-60991746 MsG0180003351.01.T01:three_prime_UTR 50.0%
GTGAGTTAACCACCAAGGGT+TGG - Chr1:60992374-60992393 MsG0180003351.01.T01:intron 50.0%
GTGATCCTCTCTAGGTGGTT+AGG - Chr1:60992429-60992448 MsG0180003351.01.T01:intron 50.0%
TACCATATGCCAACCCTTGG+TGG + Chr1:60992386-60992405 None:intergenic 50.0%
TCCAAGGTAATGACCATGGC+TGG - Chr1:60991721-60991740 MsG0180003351.01.T01:three_prime_UTR 50.0%
TCCAGCCATGGTCATTACCT+TGG + Chr1:60991725-60991744 None:intergenic 50.0%
TCGTGCGAAGGTTGTTGAGA+TGG - Chr1:60994385-60994404 MsG0180003351.01.T01:intron 50.0%
TGGAAAGAGGGAAGGCAAAG+TGG + Chr1:60991565-60991584 None:intergenic 50.0%
TTCAATTGGGCCTCCACTAG+TGG - Chr1:60992513-60992532 MsG0180003351.01.T01:intron 50.0%
TTTGGGGAAGTAGCAGGGAT+TGG + Chr1:60993289-60993308 None:intergenic 50.0%
! AACCACCAAGGGTTGGCATA+TGG - Chr1:60992381-60992400 MsG0180003351.01.T01:intron 50.0%
! CGGTTAGTCAGCAACGGTAT+TGG + Chr1:60991585-60991604 None:intergenic 50.0%
! GATGCGTGGTTTGCATGTTG+TGG + Chr1:60995624-60995643 None:intergenic 50.0%
! GCAAAGCGTTTAGGTTCAGG+GGG + Chr1:60991925-60991944 None:intergenic 50.0%
! GGCATATGGTAGTGTAGGCT+TGG - Chr1:60992395-60992414 MsG0180003351.01.T01:intron 50.0%
! GGGGGTTTGAAATTTGGAGG+AGG + Chr1:60991907-60991926 None:intergenic 50.0%
! GGGTTGGCATATGGTAGTGT+AGG - Chr1:60992390-60992409 MsG0180003351.01.T01:intron 50.0%
! TGGTTAGGTTCTAATCCCCC+AGG - Chr1:60992444-60992463 MsG0180003351.01.T01:intron 50.0%
!! GGATTGGTTCCCGGATTAGT+CGG - Chr1:60992542-60992561 MsG0180003351.01.T01:intron 50.0%
ACCCAAGGACCGACTAATCC+GGG + Chr1:60992554-60992573 None:intergenic 55.0%
ATCCCACTGTCCACTAGTGG+AGG + Chr1:60992526-60992545 None:intergenic 55.0%
CAGAGTTCCTGTTCCAGCCA+TGG + Chr1:60991737-60991756 None:intergenic 55.0%
CCAATCCCACTGTCCACTAG+TGG + Chr1:60992529-60992548 None:intergenic 55.0%
GACCCAAGGACCGACTAATC+CGG + Chr1:60992555-60992574 None:intergenic 55.0%
GCAGTGTGATCCTCTCTAGG+TGG - Chr1:60992424-60992443 MsG0180003351.01.T01:intron 55.0%
GCGAAGGTTGTTGAGATGGG+TGG - Chr1:60994389-60994408 MsG0180003351.01.T01:intron 55.0%
GTGTCAGGCCAGTCAATACC+AGG - Chr1:60992478-60992497 MsG0180003351.01.T01:intron 55.0%
! CCACTAGTGGACAGTGGGAT+TGG - Chr1:60992526-60992545 MsG0180003351.01.T01:intron 55.0%
!! AGGTGCTTTGGGGAAGTAGC+AGG + Chr1:60993295-60993314 None:intergenic 55.0%
!! GGATTAGTCGGTCCTTGGGT+CGG - Chr1:60992554-60992573 MsG0180003351.01.T01:intron 55.0%
!! GGTGCTTTGGGGAAGTAGCA+GGG + Chr1:60993294-60993313 None:intergenic 55.0%
!! TCCCGGATTAGTCGGTCCTT+GGG - Chr1:60992550-60992569 MsG0180003351.01.T01:intron 55.0%
!! TGGACAGTGGGATTGGTTCC+CGG - Chr1:60992533-60992552 MsG0180003351.01.T01:intron 55.0%
!! TTCCCGGATTAGTCGGTCCT+TGG - Chr1:60992549-60992568 MsG0180003351.01.T01:intron 55.0%
GGCTTCGGTGGTAACTTCGC+TGG + Chr1:60995573-60995592 None:intergenic 60.0%
TTCGGGCCGTTTCTTGGGCA+AGG + Chr1:60994362-60994381 None:intergenic 60.0%
! CGGCCCGAATTTTCGTGCGA+AGG - Chr1:60994373-60994392 MsG0180003351.01.T01:intron 60.0%
! GGCCTCCACTAGTGGACAGT+GGG - Chr1:60992521-60992540 MsG0180003351.01.T01:intron 60.0%
! GGGCCTCCACTAGTGGACAG+TGG - Chr1:60992520-60992539 MsG0180003351.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 60991521 60996793 60991521 ID=MsG0180003351.01;Name=MsG0180003351.01
Chr1 mRNA 60991521 60996793 60991521 ID=MsG0180003351.01.T01;Parent=MsG0180003351.01;Name=MsG0180003351.01.T01;_AED=0.49;_eAED=0.50;_QI=209|0.8|0.81|1|1|1|11|417|354
Chr1 exon 60991521 60992027 60991521 ID=MsG0180003351.01.T01:exon:23331;Parent=MsG0180003351.01.T01
Chr1 exon 60992133 60992190 60992133 ID=MsG0180003351.01.T01:exon:23330;Parent=MsG0180003351.01.T01
Chr1 exon 60992312 60992379 60992312 ID=MsG0180003351.01.T01:exon:23329;Parent=MsG0180003351.01.T01
Chr1 exon 60992700 60992759 60992700 ID=MsG0180003351.01.T01:exon:23328;Parent=MsG0180003351.01.T01
Chr1 exon 60992893 60992934 60992893 ID=MsG0180003351.01.T01:exon:23327;Parent=MsG0180003351.01.T01
Chr1 exon 60993026 60993151 60993026 ID=MsG0180003351.01.T01:exon:23326;Parent=MsG0180003351.01.T01
Chr1 exon 60993523 60993591 60993523 ID=MsG0180003351.01.T01:exon:23325;Parent=MsG0180003351.01.T01
Chr1 exon 60993881 60993995 60993881 ID=MsG0180003351.01.T01:exon:23324;Parent=MsG0180003351.01.T01
Chr1 exon 60994300 60994372 60994300 ID=MsG0180003351.01.T01:exon:23323;Parent=MsG0180003351.01.T01
Chr1 exon 60995161 60995225 60995161 ID=MsG0180003351.01.T01:exon:23322;Parent=MsG0180003351.01.T01
Chr1 exon 60996286 60996793 60996286 ID=MsG0180003351.01.T01:exon:23321;Parent=MsG0180003351.01.T01
Chr1 five_prime_UTR 60996585 60996793 60996585 ID=MsG0180003351.01.T01:five_prime_utr;Parent=MsG0180003351.01.T01
Chr1 CDS 60996286 60996584 60996286 ID=MsG0180003351.01.T01:cds;Parent=MsG0180003351.01.T01
Chr1 CDS 60995161 60995225 60995161 ID=MsG0180003351.01.T01:cds;Parent=MsG0180003351.01.T01
Chr1 CDS 60994300 60994372 60994300 ID=MsG0180003351.01.T01:cds;Parent=MsG0180003351.01.T01
Chr1 CDS 60993881 60993995 60993881 ID=MsG0180003351.01.T01:cds;Parent=MsG0180003351.01.T01
Chr1 CDS 60993523 60993591 60993523 ID=MsG0180003351.01.T01:cds;Parent=MsG0180003351.01.T01
Chr1 CDS 60993026 60993151 60993026 ID=MsG0180003351.01.T01:cds;Parent=MsG0180003351.01.T01
Chr1 CDS 60992893 60992934 60992893 ID=MsG0180003351.01.T01:cds;Parent=MsG0180003351.01.T01
Chr1 CDS 60992700 60992759 60992700 ID=MsG0180003351.01.T01:cds;Parent=MsG0180003351.01.T01
Chr1 CDS 60992312 60992379 60992312 ID=MsG0180003351.01.T01:cds;Parent=MsG0180003351.01.T01
Chr1 CDS 60992133 60992190 60992133 ID=MsG0180003351.01.T01:cds;Parent=MsG0180003351.01.T01
Chr1 CDS 60991938 60992027 60991938 ID=MsG0180003351.01.T01:cds;Parent=MsG0180003351.01.T01
Chr1 three_prime_UTR 60991521 60991937 60991521 ID=MsG0180003351.01.T01:three_prime_utr;Parent=MsG0180003351.01.T01
Gene Sequence

>MsG0180003351.01.T01

ATGACCATGGCTGGAACAGGAACTCTGAGTTTTTCTCAATTCTCAGTTCATAGGCCTGTTTCATTTTCCAGAACAAAACTACTGCCCAGAAACAGAATTTGCATTAGAGCCATGTCAGAAACAGAAACATCTTCTTCCACTTCAACTTCATCATCAACATCAGTTTCAATTACTCCTCCTCCAAATTTCAAACCCCCTGAACCTAAACGCTTTGCAATAAGATCTGATAAGACTCTTGAGATTCTTGGAGCTTCCCTTCCCTTGCTCTTTCGCTTTGCTACTGGAGTTTTCGTTTCTGGGTACTCTTTCTCATTTGTTTCTAAGGATGAAATTCCACCAAATGAATATGCTTTTAAACTTTCTGGTATTACAGTAAAAGAAACATCAAAGATAGGCGCTCGACCAGAGAAGCCCATTGAGATCTATGAATTTGAAAGAGAAATAGTTGCTGTTTTGGACCTTGATATTCTTTTCTATCCTTGCCCAAGAAACGGCCCGAATTTTCGTGCGAAGGTTGTTGAGATGGGTGGTAAAACACAGTTCCCTTACATGGTTGACCCAAACACTGGCGTTTCGATGTATGAATCAGACGAAATAATTAAGTATTGGTTGGAACATATGGTTCTAGAAATTACTGGTATTGCACTCTTCACCAAAAATAATCCTATTGCGAGTGTTTTGACATTCATTATGTGTTCTGCAGGCGATGGAAACATTCCTCTTACTTTATCGCTTGGATTTTTAACGTCATTGACTTGCGGTTTTGCTATGCTTGGTCGCATTACAAAGGGAACATCATATACTCCAGCGAAGTTACCACCGAAGCCACTTAAATTATGGGCATATGAGGGATCTCCTTTCTGCAAAATCGTACGTGAAGTACTTGTGGAATTGGAGCTGCCACATTTGCTTGTCAATTGTGCTAGGGGTAGCCCAAAACGAAATATTCTATATCAGAAAACTGGACATTTCCAGGTACCTTTTTTGGAAGATCCAAACACTGGGGTAGAAATGTTTGAGAGTGCAGAAATTATAGAGTACATTAGAGCAACTTACACTCTTTAG

Protein sequence

>MsG0180003351.01.T01

MTMAGTGTLSFSQFSVHRPVSFSRTKLLPRNRICIRAMSETETSSSTSTSSSTSVSITPPPNFKPPEPKRFAIRSDKTLEILGASLPLLFRFATGVFVSGYSFSFVSKDEIPPNEYAFKLSGITVKETSKIGARPEKPIEIYEFEREIVAVLDLDILFYPCPRNGPNFRAKVVEMGGKTQFPYMVDPNTGVSMYESDEIIKYWLEHMVLEITGIALFTKNNPIASVLTFIMCSAGDGNIPLTLSLGFLTSLTCGFAMLGRITKGTSYTPAKLPPKPLKLWAYEGSPFCKIVREVLVELELPHLLVNCARGSPKRNILYQKTGHFQVPFLEDPNTGVEMFESAEIIEYIRATYTL*