AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024496.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024496.01.T01 MTR_5g012130 97.508 321 8 0 125 445 131 451 0.0 662
MsG0580024496.01.T01 MTR_5g012130 98.995 199 2 0 125 323 151 349 2.60e-144 416
MsG0580024496.01.T01 MTR_8g037880 48.312 385 172 9 69 436 55 429 9.46e-113 338
MsG0580024496.01.T01 MTR_8g037910 46.381 373 181 7 69 430 55 419 3.53e-106 322
MsG0580024496.01.T01 MTR_3g437580 45.806 310 155 4 131 436 143 443 6.36e-95 293
MsG0580024496.01.T01 MTR_5g012130 97.692 130 3 0 125 254 151 280 2.69e-87 268
MsG0580024496.01.T01 MTR_8g037910 47.566 267 125 6 69 324 55 317 5.24e-71 227
MsG0580024496.01.T01 MTR_3g437580 49.495 198 96 2 131 324 143 340 4.86e-64 211
MsG0580024496.01.T01 MTR_8g037910 41.892 222 114 6 69 279 55 272 2.07e-42 151
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024496.01.T01 AT1G62600 63.844 307 106 2 138 443 149 451 1.57e-145 423
MsG0580024496.01.T01 AT1G63370 61.300 323 117 4 125 443 131 449 1.11e-144 421
MsG0580024496.01.T01 AT1G62620 61.610 323 116 4 125 443 131 449 1.35e-144 421
MsG0580024496.01.T01 AT1G12200 58.769 325 130 2 119 443 132 452 2.57e-138 405
MsG0580024496.01.T01 AT1G12140 57.009 321 133 2 125 445 133 448 5.03e-130 384
MsG0580024496.01.T01 AT1G12140 57.009 321 133 2 125 445 133 448 5.03e-130 384
MsG0580024496.01.T01 AT1G62580 59.502 321 124 5 125 443 133 449 2.61e-128 379
MsG0580024496.01.T01 AT1G12140 56.386 321 133 3 125 445 133 446 2.24e-126 374
MsG0580024496.01.T01 AT1G62540 55.663 309 132 2 138 445 144 448 3.33e-123 366
MsG0580024496.01.T01 AT1G62560 53.727 322 144 2 125 445 132 449 5.89e-123 365
MsG0580024496.01.T01 AT1G62620 67.769 242 77 1 138 378 147 388 9.96e-122 360
MsG0580024496.01.T01 AT1G65860 54.369 309 136 2 138 445 144 448 5.99e-121 360
MsG0580024496.01.T01 AT1G62600 68.182 242 76 1 138 378 149 390 1.54e-120 357
MsG0580024496.01.T01 AT1G62580 53.955 354 124 7 125 443 133 482 1.21e-119 358
MsG0580024496.01.T01 AT1G62570 55.016 309 134 2 138 445 144 448 1.61e-119 357
MsG0580024496.01.T01 AT1G62540 51.796 334 131 3 138 445 144 473 4.35e-119 356
MsG0580024496.01.T01 AT1G12160 52.188 320 136 2 139 444 145 461 6.37e-118 353
MsG0580024496.01.T01 AT1G12130 52.454 326 125 6 139 444 148 463 1.37e-113 342
MsG0580024496.01.T01 AT1G62540 51.456 309 127 4 138 445 144 430 7.35e-109 329
MsG0580024496.01.T01 AT1G62560 58.824 255 104 1 125 378 132 386 1.59e-105 319
MsG0580024496.01.T01 AT1G63340 50.156 321 114 4 125 443 133 409 1.61e-104 317
MsG0580024496.01.T01 AT5G61290 48.667 300 146 3 139 436 154 447 2.76e-102 313
MsG0580024496.01.T01 AT5G07800 45.806 310 157 5 139 443 155 458 1.10e-95 296
MsG0580024496.01.T01 AT1G63370 67.021 188 61 1 138 324 147 334 2.52e-91 280
MsG0580024496.01.T01 AT1G12200 63.592 206 74 1 119 324 132 336 3.61e-88 274
MsG0580024496.01.T01 AT1G62580 61.502 213 67 4 125 323 133 344 1.83e-76 243

Find 140 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATTGGCGTGAACAATTT+TGG 0.185892 5:+5558817 None:intergenic
TTTGCTGGGGTGGGTGAAGG+TGG 0.205048 5:-5558380 MsG0580024496.01.T01:CDS
TAAGAGGCACACTCATAATA+TGG 0.255894 5:-5556383 MsG0580024496.01.T01:CDS
AAGAAAATAACCAGGAATAT+TGG 0.264046 5:+5558256 None:intergenic
CTCCATGGCTTTCCTTTGTT+GGG 0.291150 5:-5556558 MsG0580024496.01.T01:CDS
AAGACAGAGGTGGTGTTTGC+TGG 0.296073 5:-5558395 MsG0580024496.01.T01:CDS
ATATTATGAGTGTGCCTCTT+AGG 0.298315 5:+5556385 None:intergenic
TAACATGTGGCTTCATTCTA+TGG 0.307413 5:-5557167 MsG0580024496.01.T01:intron
TGCAGTGGGACTACAATAAC+TGG 0.310122 5:-5555293 MsG0580024496.01.T01:intron
GTGTTTGCTGGGGTGGGTGA+AGG 0.313072 5:-5558383 MsG0580024496.01.T01:CDS
CACGGGCTCGGCCAATGTTC+AGG 0.313423 5:-5556359 MsG0580024496.01.T01:intron
CATACTCTCCCGAGGCAAAT+TGG 0.320024 5:+5558552 None:intergenic
GGGTAGGTTGTAGTTCTAAT+AGG 0.325138 5:-5557304 MsG0580024496.01.T01:intron
GCTCGGGTGTTCTGTAATTA+TGG 0.325418 5:+5557635 None:intergenic
AGAAAATAACCAGGAATATT+GGG 0.332604 5:+5558257 None:intergenic
GCTCCATGGCTTTCCTTTGT+TGG 0.336615 5:-5556559 MsG0580024496.01.T01:CDS
GAATGTAAATTATATATGTT+TGG 0.343768 5:-5555001 MsG0580024496.01.T01:three_prime_UTR
CCGAGACTTCCCAATATTCC+TGG 0.353788 5:-5558266 MsG0580024496.01.T01:intron
AGTGGATAAGCTTCCGGTTC+GGG 0.354622 5:+5558599 None:intergenic
GGGTGGGTGAAGGTGGGAAA+TGG 0.367744 5:-5558373 MsG0580024496.01.T01:CDS
GCCGATGACTGCCACGTGGC+GGG 0.373968 5:+5558759 None:intergenic
TGGCTATGCATTTGCTTCCC+TGG 0.375441 5:+5557655 None:intergenic
AGAGGTGGTGTTTGCTGGGG+TGG 0.381682 5:-5558390 MsG0580024496.01.T01:CDS
CTTTGTTGGGTTACCTTGGA+AGG 0.382913 5:-5556545 MsG0580024496.01.T01:CDS
ATGGAGAACGCAAATGTATA+TGG 0.387354 5:-5555235 MsG0580024496.01.T01:CDS
TGCTACTAAGCCTCCGGCGC+CGG 0.388838 5:+5558735 None:intergenic
AGAATCCGACCCACTCGGTT+TGG 0.394740 5:-5558623 MsG0580024496.01.T01:CDS
TGGTTCGGAGTGAATTGTAT+AGG 0.394896 5:+5558572 None:intergenic
TACTTGTCACTTGAAGAATC+TGG 0.396469 5:-5556412 MsG0580024496.01.T01:CDS
TACTTGATCTTGAAAGGGCT+CGG 0.401139 5:+5557618 None:intergenic
CACTCGGTTTGGACCCGAAC+CGG 0.410482 5:-5558612 MsG0580024496.01.T01:CDS
CTTCGAGCGAGGAGAAGAAT+TGG 0.410605 5:-5558674 MsG0580024496.01.T01:CDS
GGCTCGAGTGGATAAGCTTC+CGG 0.414887 5:+5558593 None:intergenic
GAGGTGGTGTTTGCTGGGGT+GGG 0.423874 5:-5558389 MsG0580024496.01.T01:CDS
CTGCAGAGCAAGTGGATAGC+TGG 0.424635 5:-5556499 MsG0580024496.01.T01:CDS
GAGTGGATAAGCTTCCGGTT+CGG 0.425312 5:+5558598 None:intergenic
TTAATAAATGGAAGAATCAA+TGG 0.432279 5:+5558845 None:intergenic
GCAGTCATCGGCGCCGGCGC+CGG 0.432692 5:-5558748 MsG0580024496.01.T01:CDS
GAGAAGAATTGGGCGGTTCA+TGG 0.435788 5:-5558663 MsG0580024496.01.T01:CDS
TCACCACACCATTGGTTTCA+AGG 0.437617 5:+5556638 None:intergenic
CACGTGGCAGTCATCGGCGC+CGG 0.444457 5:-5558754 MsG0580024496.01.T01:CDS
ATCACTTACTTGATCTTGAA+AGG 0.452689 5:+5557612 None:intergenic
TTGCTGGGGTGGGTGAAGGT+GGG 0.455177 5:-5558379 MsG0580024496.01.T01:CDS
TTCCACCGGCGTTAGCTCCA+TGG 0.457976 5:-5556573 MsG0580024496.01.T01:CDS
TGTGAGAAGTGGTGTTGCGG+TGG 0.462747 5:+5558783 None:intergenic
TCAGGCATTAATGCATGGCC+AGG 0.465216 5:-5557673 MsG0580024496.01.T01:intron
TTTCCTTTGTTGGGTTACCT+TGG 0.473219 5:-5556549 MsG0580024496.01.T01:CDS
TGCTCTGCAGTTCAAACAAA+GGG 0.480096 5:+5556512 None:intergenic
AGACAGAGGTGGTGTTTGCT+GGG 0.480683 5:-5558394 MsG0580024496.01.T01:CDS
GTTCTCCATTCTTCCATAGC+AGG 0.489761 5:+5555249 None:intergenic
GTCATCGGCGCCGGCGCCGG+AGG 0.490906 5:-5558745 MsG0580024496.01.T01:CDS
CACTCCGAACCAATTTGCCT+CGG 0.495195 5:-5558561 MsG0580024496.01.T01:CDS
CACTCGTCACGATAAGTCTC+AGG 0.501205 5:+5555186 None:intergenic
GTGGGCATGATGAATTTCAT+TGG 0.502202 5:+5558802 None:intergenic
GACTTCATTGTACATTGCAC+AGG 0.505864 5:-5556970 MsG0580024496.01.T01:CDS
TCATAATATGGGCACGGGCT+CGG 0.507929 5:-5556371 MsG0580024496.01.T01:CDS
TTTCCTTTCCTTGAAACCAA+TGG 0.508177 5:-5556646 MsG0580024496.01.T01:CDS
TCAGTGCGGTGTTCCTGCTA+TGG 0.508464 5:-5555262 MsG0580024496.01.T01:CDS
GCGTGCTGCTACTAAGCCTC+CGG 0.510739 5:+5558729 None:intergenic
ATATGGCTACATCTAAGAAC+AGG 0.511352 5:-5555218 MsG0580024496.01.T01:CDS
ACTTGATCTTGAAAGGGCTC+GGG 0.512775 5:+5557619 None:intergenic
AGAAGAATTGGGCGGTTCAT+GGG 0.513280 5:-5558662 MsG0580024496.01.T01:CDS
AGTGGGTCGGATTCTATCGC+TGG 0.516193 5:+5558631 None:intergenic
GTGAGAAGTGGTGTTGCGGT+GGG 0.518569 5:+5558784 None:intergenic
TCACTTACTTGATCTTGAAA+GGG 0.518929 5:+5557613 None:intergenic
TTCGAGCGAGGAGAAGAATT+GGG 0.519829 5:-5558673 MsG0580024496.01.T01:CDS
TCTCCCGAGGCAAATTGGTT+CGG 0.520142 5:+5558557 None:intergenic
AGCCACATGTTATCATGGCC+AGG 0.523909 5:+5557178 None:intergenic
CCCCGCCACGTGGCAGTCAT+CGG 0.524579 5:-5558760 MsG0580024496.01.T01:CDS
AATGAAGCCACATGTTATCA+TGG 0.526082 5:+5557173 None:intergenic
ACTCCGAACCAATTTGCCTC+GGG 0.526203 5:-5558560 MsG0580024496.01.T01:CDS
AAGAGGCACACTCATAATAT+GGG 0.527124 5:-5556382 MsG0580024496.01.T01:CDS
GGGAAAGGAGCAACCTTCCA+AGG 0.527136 5:+5556532 None:intergenic
ATCTACGGTCACCACACCAT+TGG 0.533574 5:+5556630 None:intergenic
TCTGTTGAAGAAGATAAGCT+TGG 0.538010 5:-5557208 MsG0580024496.01.T01:CDS
CATTGCCCTTCCTTCAGAAG+AGG 0.538791 5:-5556461 MsG0580024496.01.T01:CDS
GGAGATGACTAAAGATATTG+AGG 0.539150 5:-5556440 MsG0580024496.01.T01:CDS
ATTGACAGTGTTCATGAAGA+TGG 0.540078 5:-5557030 MsG0580024496.01.T01:CDS
ACACCATTGGTTTCAAGGAA+AGG 0.541856 5:+5556643 None:intergenic
GAGATCTAGATCGGTGGAGA+GGG 0.542522 5:-5558345 MsG0580024496.01.T01:CDS
AAGAATCTGGCATTCCTAAG+AGG 0.544319 5:-5556399 MsG0580024496.01.T01:CDS
TCATCTCCTCTTCTGAAGGA+AGG 0.544426 5:+5556455 None:intergenic
CATCTCCTCTTCTGAAGGAA+GGG 0.547731 5:+5556456 None:intergenic
GGGTGTGAGAAGTGGTGTTG+CGG 0.549595 5:+5558780 None:intergenic
CCAGGAATATTGGGAAGTCT+CGG 0.551573 5:+5558266 None:intergenic
TTAGTCATCTCCTCTTCTGA+AGG 0.554548 5:+5556451 None:intergenic
GGGTGAAGGTGGGAAATGGA+CGG 0.554732 5:-5558369 MsG0580024496.01.T01:CDS
TGTTTGAACTGCAGAGCAAG+TGG 0.561360 5:-5556507 MsG0580024496.01.T01:CDS
GAATCGTAATCGTAAGCCAC+AGG 0.564603 5:+5558872 None:intergenic
GCACGCGAGCTCCGACGAGA+AGG 0.564731 5:-5558712 MsG0580024496.01.T01:CDS
GCGATAGAATCCGACCCACT+CGG 0.565622 5:-5558628 MsG0580024496.01.T01:CDS
AATATGAACTTCTTTAGCAA+CGG 0.565855 5:+5557240 None:intergenic
TGCAGTTCAAACAAAGGGAA+AGG 0.568166 5:+5556517 None:intergenic
GATGCTGTTGTTGTTTGCAA+TGG 0.576128 5:-5558302 MsG0580024496.01.T01:CDS
GTTAAGAATAACACTGAACT+AGG 0.576377 5:+5555054 None:intergenic
CGCCGATGACTGCCACGTGG+CGG 0.576460 5:+5558758 None:intergenic
GTGTTCCTGCTATGGAAGAA+TGG 0.577997 5:-5555254 MsG0580024496.01.T01:CDS
ATATAAAGGCACCTGAACAT+TGG 0.580551 5:+5556348 None:intergenic
GATAAGCTTGGAAAGTTACC+TGG 0.583301 5:-5557196 MsG0580024496.01.T01:CDS
TTGCTCTGCAGTTCAAACAA+AGG 0.584189 5:+5556511 None:intergenic
CACACTCATAATATGGGCAC+GGG 0.585534 5:-5556376 MsG0580024496.01.T01:CDS
ACCGTAGATGACAATCGTGT+TGG 0.587555 5:-5556616 MsG0580024496.01.T01:CDS
GACAGAGGTGGTGTTTGCTG+GGG 0.588809 5:-5558393 MsG0580024496.01.T01:CDS
CCGATGACTGCCACGTGGCG+GGG 0.590887 5:+5558760 None:intergenic
TCGAGAAATATCAACCGCAC+TGG 0.594589 5:+5557273 None:intergenic
TGAGATCTAGATCGGTGGAG+AGG 0.598722 5:-5558346 MsG0580024496.01.T01:CDS
TCCAACACGATTGTCATCTA+CGG 0.599218 5:+5556615 None:intergenic
CTACTTGATGTCCTTCTCGT+CGG 0.601788 5:+5558701 None:intergenic
TAGGTTGTAGTTCTAATAGG+TGG 0.603871 5:-5557301 MsG0580024496.01.T01:CDS
CGGGTCCAAACCGAGTGGGT+CGG 0.604890 5:+5558618 None:intergenic
TACTGTAATCATAATTCCTG+TGG 0.606303 5:-5558888 MsG0580024496.01.T01:CDS
CGGCGCCGATGACTGCCACG+TGG 0.606541 5:+5558755 None:intergenic
AACCCAACAAAGGAAAGCCA+TGG 0.607422 5:+5556556 None:intergenic
GCACACTCATAATATGGGCA+CGG 0.608045 5:-5556377 MsG0580024496.01.T01:CDS
ACGTGGCGGGGTGTGAGAAG+TGG 0.608557 5:+5558772 None:intergenic
GTGAATTGTATAGGCTCGAG+TGG 0.612633 5:+5558581 None:intergenic
ATGGACGGTGAGATCTAGAT+CGG 0.619336 5:-5558354 MsG0580024496.01.T01:CDS
GACGGTGAGATCTAGATCGG+TGG 0.626733 5:-5558351 MsG0580024496.01.T01:CDS
GGTTCGGGTCCAAACCGAGT+GGG 0.626979 5:+5558614 None:intergenic
AGCCATGGAGCTAACGCCGG+TGG 0.629282 5:+5556571 None:intergenic
CAGGCATTAATGCATGGCCA+GGG 0.629289 5:-5557672 MsG0580024496.01.T01:CDS
ATCGGTGGAGAGGGAATGTG+TGG 0.636731 5:-5558336 MsG0580024496.01.T01:CDS
GGTTGATATTTCTCGAGACG+TGG 0.639339 5:-5557266 MsG0580024496.01.T01:CDS
CTGAGACTTATCGTGACGAG+TGG 0.640097 5:-5555185 MsG0580024496.01.T01:CDS
TTTCCTTGAAACCAATGGTG+TGG 0.641481 5:-5556641 MsG0580024496.01.T01:CDS
CGGTTCGGGTCCAAACCGAG+TGG 0.649786 5:+5558613 None:intergenic
TTTGGTGAGGTTGAAGACAG+AGG 0.656329 5:-5558408 MsG0580024496.01.T01:intron
GAGCGAGGAGAAGAATTGGG+CGG 0.661680 5:-5558670 MsG0580024496.01.T01:CDS
CAAGTAGTAGTCTTCGAGCG+AGG 0.661706 5:-5558685 MsG0580024496.01.T01:CDS
TGAGACTTATCGTGACGAGT+GGG 0.661820 5:-5555184 MsG0580024496.01.T01:CDS
TACCTGGCCATGATAACATG+TGG 0.663783 5:-5557180 MsG0580024496.01.T01:CDS
CGGAAACCCATACTCTCCCG+AGG 0.666291 5:+5558544 None:intergenic
CTTCCAAGGTAACCCAACAA+AGG 0.675077 5:+5556546 None:intergenic
GAAAGCCATGGAGCTAACGC+CGG 0.676417 5:+5556568 None:intergenic
TGTTCATGAAGATGGTACAG+TGG 0.683307 5:-5557022 MsG0580024496.01.T01:CDS
ACTTCATTGTACATTGCACA+GGG 0.687673 5:-5556969 MsG0580024496.01.T01:intron
ACTTCTCACACCCCGCCACG+TGG 0.689666 5:-5558770 MsG0580024496.01.T01:CDS
GGTGAGGTTGAAGACAGAGG+TGG 0.690231 5:-5558405 MsG0580024496.01.T01:intron
AATAGGTGGTGCTGCCAGTG+CGG 0.737644 5:-5557287 MsG0580024496.01.T01:CDS
AACTGGATTGCTGATCAGTG+CGG 0.766461 5:-5555276 MsG0580024496.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAGCAATAAATAATTTA+AGG + Chr5:5555960-5555979 None:intergenic 10.0%
!! ATGAATAATCAAATAAAAAT+TGG + Chr5:5555839-5555858 None:intergenic 10.0%
!! TTTGATATAACAAAATATAA+AGG + Chr5:5557521-5557540 None:intergenic 10.0%
!!! ATGTTTTTATTTTTTTCAAT+TGG - Chr5:5555766-5555785 MsG0580024496.01.T01:intron 10.0%
!! ATTGTACTTATTATTGTTAT+AGG - Chr5:5556048-5556067 MsG0580024496.01.T01:intron 15.0%
!! GAATGTAAATTATATATGTT+TGG - Chr5:5558851-5558870 MsG0580024496.01.T01:CDS 15.0%
!! AATAGTTAACTATCCTTTAA+TGG - Chr5:5558507-5558526 MsG0580024496.01.T01:intron 20.0%
!! ATTAGAAAACAGAATATAAG+AGG + Chr5:5555694-5555713 None:intergenic 20.0%
!! CAAAATTCAACTTAACAATT+CGG - Chr5:5556146-5556165 MsG0580024496.01.T01:intron 20.0%
!! GGTTTAAAAGAAAACTAATA+GGG + Chr5:5556922-5556941 None:intergenic 20.0%
!! TAACTAAAAAAGAATCCTAA+TGG + Chr5:5556291-5556310 None:intergenic 20.0%
!! TAGTCTTTAAACTAAAATGT+TGG - Chr5:5555805-5555824 MsG0580024496.01.T01:intron 20.0%
!! TGGTTTAAAAGAAAACTAAT+AGG + Chr5:5556923-5556942 None:intergenic 20.0%
!! TTAATAAATGGAAGAATCAA+TGG + Chr5:5555010-5555029 None:intergenic 20.0%
!!! ATGTCTCTTTCTTATTTATA+TGG - Chr5:5555622-5555641 MsG0580024496.01.T01:intron 20.0%
!!! ATTTTGGTGTTGTTAATAAA+TGG + Chr5:5555022-5555041 None:intergenic 20.0%
!!! TTTTAGTTTAAAGACTAACA+AGG + Chr5:5555802-5555821 None:intergenic 20.0%
! AAGAAAATAACCAGGAATAT+TGG + Chr5:5555599-5555618 None:intergenic 25.0%
! AATATGAACTTCTTTAGCAA+CGG + Chr5:5556615-5556634 None:intergenic 25.0%
! ACAAATTCAAATAGCTCATT+TGG - Chr5:5556338-5556357 MsG0580024496.01.T01:intron 25.0%
! AGAAAATAACCAGGAATATT+GGG + Chr5:5555598-5555617 None:intergenic 25.0%
! ATATTGATACTAGTTCCATT+AGG - Chr5:5556273-5556292 MsG0580024496.01.T01:intron 25.0%
! ATTAGTAACCATAAACTGTT+TGG - Chr5:5556751-5556770 MsG0580024496.01.T01:intron 25.0%
! ATTCTTAATTGTTCAGACTT+AGG - Chr5:5558367-5558386 MsG0580024496.01.T01:CDS 25.0%
! CACTATAATACAAGAAGAAA+CGG + Chr5:5558331-5558350 None:intergenic 25.0%
! GAAATGAAATTGAAAAAGCT+TGG + Chr5:5555717-5555736 None:intergenic 25.0%
! GAACTGTTGGATTTAATTAA+CGG + Chr5:5558254-5558273 None:intergenic 25.0%
! TTAGAAGAAAAGAAGAGAAA+GGG - Chr5:5555342-5555361 MsG0580024496.01.T01:intron 25.0%
! TTGAGGACTCAAATATATTT+AGG - Chr5:5557078-5557097 MsG0580024496.01.T01:intron 25.0%
! TTTAGAAGAAAAGAAGAGAA+AGG - Chr5:5555341-5555360 MsG0580024496.01.T01:intron 25.0%
!! TTCTCTTCTTTTCTTCTAAA+AGG + Chr5:5555341-5555360 None:intergenic 25.0%
!! TTTTAAACCAGTTTATGTTG+TGG - Chr5:5556933-5556952 MsG0580024496.01.T01:intron 25.0%
!!! ATGGTAAAACTTGTTATCTA+TGG - Chr5:5556704-5556723 MsG0580024496.01.T01:intron 25.0%
!!! TAAGTTTTAAATCGCAAATG+CGG - Chr5:5556959-5556978 MsG0580024496.01.T01:intron 25.0%
!!! TCTCTTCTTTTCTTCTAAAA+GGG + Chr5:5555340-5555359 None:intergenic 25.0%
!!! TTCTATCCATTTTTTGTGTT+GGG - Chr5:5556528-5556547 MsG0580024496.01.T01:CDS 25.0%
!!! TTTATTAGGTTGTTTCTTCT+GGG - Chr5:5557545-5557564 MsG0580024496.01.T01:intron 25.0%
!!! TTTTATTAGGTTGTTTCTTC+TGG - Chr5:5557544-5557563 MsG0580024496.01.T01:intron 25.0%
!!! TTTTTTCAATTGGAATGACA+TGG - Chr5:5555776-5555795 MsG0580024496.01.T01:intron 25.0%
AAAAAATTGACTAGATCGCA+TGG - Chr5:5558154-5558173 MsG0580024496.01.T01:intron 30.0%
AACATATCAGGTTCCATTAA+AGG + Chr5:5558523-5558542 None:intergenic 30.0%
AAGGATTGAATGGAAATCAA+TGG - Chr5:5558072-5558091 MsG0580024496.01.T01:intron 30.0%
AAGGTTTAATTACCTGTGTT+TGG - Chr5:5558193-5558212 MsG0580024496.01.T01:intron 30.0%
ACAGTTATCCAAACAGTTTA+TGG + Chr5:5556762-5556781 None:intergenic 30.0%
AGAACATGGTTAAAAAAACC+AGG + Chr5:5558445-5558464 None:intergenic 30.0%
AGAATACTCCATGATATAGA+CGG - Chr5:5557928-5557947 MsG0580024496.01.T01:intron 30.0%
AGCATATGTAATATGTTCGA+TGG + Chr5:5556470-5556489 None:intergenic 30.0%
AGGTTTAATTACCTGTGTTT+GGG - Chr5:5558194-5558213 MsG0580024496.01.T01:intron 30.0%
ATATATTTGAGTCCTCAACA+TGG + Chr5:5557076-5557095 None:intergenic 30.0%
ATCACTTACTTGATCTTGAA+AGG + Chr5:5556243-5556262 None:intergenic 30.0%
ATCATACTTGTACCTAGAAA+AGG + Chr5:5557186-5557205 None:intergenic 30.0%
CGTTTCTTCTTGTATTATAG+TGG - Chr5:5558329-5558348 MsG0580024496.01.T01:CDS 30.0%
GTCAAATTAACATGAACTGT+TGG + Chr5:5558267-5558286 None:intergenic 30.0%
GTTAAGAATAACACTGAACT+AGG + Chr5:5558801-5558820 None:intergenic 30.0%
GTTGCTATAACATTGCAATT+TGG + Chr5:5557029-5557048 None:intergenic 30.0%
TAACCATGTTCTGTTTCAAA+AGG - Chr5:5558453-5558472 MsG0580024496.01.T01:intron 30.0%
TAATGGAACCTGATATGTTA+AGG - Chr5:5558524-5558543 MsG0580024496.01.T01:intron 30.0%
TACACATTCCTTAACATATC+AGG + Chr5:5558535-5558554 None:intergenic 30.0%
TACTGTAATCATAATTCCTG+TGG - Chr5:5554964-5554983 MsG0580024496.01.T01:three_prime_UTR 30.0%
TATACAGAGCTAAAATATCC+TGG - Chr5:5558424-5558443 MsG0580024496.01.T01:intron 30.0%
TATCTATGGTGAGAATTAGA+TGG - Chr5:5556718-5556737 MsG0580024496.01.T01:intron 30.0%
TATGGTTACTAATGTCATGA+TGG + Chr5:5556744-5556763 None:intergenic 30.0%
TCAAGATCAAGTAAGTGATA+TGG - Chr5:5556244-5556263 MsG0580024496.01.T01:intron 30.0%
TCACTTACTTGATCTTGAAA+GGG + Chr5:5556242-5556261 None:intergenic 30.0%
TCCATTATTAGCTGGTAATT+CGG - Chr5:5557846-5557865 MsG0580024496.01.T01:intron 30.0%
TGAATGGAAATCAATGGAAA+AGG - Chr5:5558078-5558097 MsG0580024496.01.T01:intron 30.0%
! TGCAATTTAAAACCATGTTG+AGG - Chr5:5557061-5557080 MsG0580024496.01.T01:intron 30.0%
! TTCTTCTAAAAGGGTAATCT+CGG + Chr5:5555331-5555350 None:intergenic 30.0%
!! CTGCAATATAAATGTTTTGG+AGG - Chr5:5556982-5557001 MsG0580024496.01.T01:CDS 30.0%
!! GAGAGTTTTGATGTATTTGA+AGG - Chr5:5555393-5555412 MsG0580024496.01.T01:intron 30.0%
!! TTGCATTTGACTTCATTTTG+TGG + Chr5:5558403-5558422 None:intergenic 30.0%
!!! AGATTTTGAGATTGGTGATT+TGG - Chr5:5555426-5555445 MsG0580024496.01.T01:intron 30.0%
!!! CTTCTATCCATTTTTTGTGT+TGG - Chr5:5556527-5556546 MsG0580024496.01.T01:CDS 30.0%
!!! TTTGCTGAAGATTTTGAGAT+TGG - Chr5:5555418-5555437 MsG0580024496.01.T01:intron 30.0%
AACCTACCCAACACAAAAAA+TGG + Chr5:5556537-5556556 None:intergenic 35.0%
AATGAAGCCACATGTTATCA+TGG + Chr5:5556682-5556701 None:intergenic 35.0%
AATGGAGGTTAACAGATCTA+TGG + Chr5:5557832-5557851 None:intergenic 35.0%
ACTTCATTGTACATTGCACA+GGG - Chr5:5556883-5556902 MsG0580024496.01.T01:intron 35.0%
ACTTTATGAATGTGCTAGAG+TGG + Chr5:5555649-5555668 None:intergenic 35.0%
AGACTTTATGTCTCAATTGC+AGG + Chr5:5557113-5557132 None:intergenic 35.0%
AGGACACAAGAAATGGATAT+AGG - Chr5:5558098-5558117 MsG0580024496.01.T01:intron 35.0%
ATATGGCTACATCTAAGAAC+AGG - Chr5:5558634-5558653 MsG0580024496.01.T01:CDS 35.0%
ATATTATGAGTGTGCCTCTT+AGG + Chr5:5557470-5557489 None:intergenic 35.0%
ATGGAAAAGGACACAAGAAA+TGG - Chr5:5558091-5558110 MsG0580024496.01.T01:intron 35.0%
ATGGAGAACGCAAATGTATA+TGG - Chr5:5558617-5558636 MsG0580024496.01.T01:CDS 35.0%
ATGGAGGTTAACAGATCTAT+GGG + Chr5:5557831-5557850 None:intergenic 35.0%
ATTATTAGCTGGTAATTCGG+CGG - Chr5:5557849-5557868 MsG0580024496.01.T01:intron 35.0%
ATTGACAGTGTTCATGAAGA+TGG - Chr5:5556822-5556841 MsG0580024496.01.T01:intron 35.0%
CATGCATTAATGCCTGAAAA+AGG + Chr5:5556176-5556195 None:intergenic 35.0%
CATTGCAATTTGGACATTGT+CGG + Chr5:5557019-5557038 None:intergenic 35.0%
CGGTGGAGTAAAAATTATCT+TGG - Chr5:5558032-5558051 MsG0580024496.01.T01:intron 35.0%
CTTAAGTCCACAACATAAAC+TGG + Chr5:5556943-5556962 None:intergenic 35.0%
GAATTACCAGCTAATAATGG+AGG + Chr5:5557847-5557866 None:intergenic 35.0%
GACATGAGAAGAAAATAACC+AGG + Chr5:5555607-5555626 None:intergenic 35.0%
GGAGATGACTAAAGATATTG+AGG - Chr5:5557412-5557431 MsG0580024496.01.T01:intron 35.0%
GTAAGTTTCCGATGAATTGT+CGG - Chr5:5557970-5557989 MsG0580024496.01.T01:intron 35.0%
GTACCTAGAAAAGGAACAAA+TGG + Chr5:5557177-5557196 None:intergenic 35.0%
TAACATGTGGCTTCATTCTA+TGG - Chr5:5556685-5556704 MsG0580024496.01.T01:intron 35.0%
TCACTGAGATAAGGATTGAA+TGG - Chr5:5558062-5558081 MsG0580024496.01.T01:intron 35.0%
TCTGTTGAAGAAGATAAGCT+TGG - Chr5:5556644-5556663 MsG0580024496.01.T01:CDS 35.0%
TGTTAACCTCCATTATTAGC+TGG - Chr5:5557838-5557857 MsG0580024496.01.T01:intron 35.0%
TTGACTGAATTTCGAAACTC+TGG - Chr5:5558131-5558150 MsG0580024496.01.T01:intron 35.0%
TTGCAATGTTATAGCAACGA+CGG - Chr5:5557031-5557050 MsG0580024496.01.T01:CDS 35.0%
TTTACTCTAAACCCAAACAC+AGG + Chr5:5558208-5558227 None:intergenic 35.0%
TTTCCTTTCCTTGAAACCAA+TGG - Chr5:5557206-5557225 MsG0580024496.01.T01:CDS 35.0%
! AAGAGGCACACTCATAATAT+GGG - Chr5:5557470-5557489 MsG0580024496.01.T01:intron 35.0%
! CAATTCGGATAACCTTTTTC+AGG - Chr5:5556161-5556180 MsG0580024496.01.T01:intron 35.0%
! CGGCTGCAATATAAATGTTT+TGG - Chr5:5556979-5556998 MsG0580024496.01.T01:CDS 35.0%
! GGTTTCCAATGTTTGAAATC+CGG - Chr5:5557873-5557892 MsG0580024496.01.T01:intron 35.0%
! TAAGAGGCACACTCATAATA+TGG - Chr5:5557469-5557488 MsG0580024496.01.T01:intron 35.0%
! TACTTGTCACTTGAAGAATC+TGG - Chr5:5557440-5557459 MsG0580024496.01.T01:intron 35.0%
! TCAGGAGGTTGTTGATAAAA+CGG + Chr5:5557786-5557805 None:intergenic 35.0%
! TGTCCATTTGTTCCTTTTCT+AGG - Chr5:5557171-5557190 MsG0580024496.01.T01:CDS 35.0%
! TTCATTGGCGTGAACAATTT+TGG + Chr5:5555038-5555057 None:intergenic 35.0%
!! ATATAAAGGCACCTGAACAT+TGG + Chr5:5557507-5557526 None:intergenic 35.0%
!! TAGGTTGTAGTTCTAATAGG+TGG - Chr5:5556551-5556570 MsG0580024496.01.T01:CDS 35.0%
!!! ATCCATTTTTTGTGTTGGGT+AGG - Chr5:5556532-5556551 MsG0580024496.01.T01:CDS 35.0%
!!! ATGCCTTTTGAAACAGAACA+TGG + Chr5:5558459-5558478 None:intergenic 35.0%
!!! CTTTTTCAGGCATTAATGCA+TGG - Chr5:5556174-5556193 MsG0580024496.01.T01:intron 35.0%
AAGAATCTGGCATTCCTAAG+AGG - Chr5:5557453-5557472 MsG0580024496.01.T01:intron 40.0%
ACCGACAATTCATTGTTCGA+CGG + Chr5:5558016-5558035 None:intergenic 40.0%
AGAAAGGGAGAGATTGTAGA+AGG - Chr5:5555357-5555376 MsG0580024496.01.T01:intron 40.0%
AGACGGTTCTGCAATTATCT+CGG - Chr5:5557945-5557964 MsG0580024496.01.T01:intron 40.0%
AGGAATGTGTATTCTTGCAG+TGG - Chr5:5558544-5558563 MsG0580024496.01.T01:intron 40.0%
ATCAAAACTCTCCATGACTC+GGG + Chr5:5555385-5555404 None:intergenic 40.0%
CAGTTGTTCGATGCATCTAA+TGG - Chr5:5557621-5557640 MsG0580024496.01.T01:CDS 40.0%
CATCAAAACTCTCCATGACT+CGG + Chr5:5555386-5555405 None:intergenic 40.0%
CTCTACCGGATTTCAAACAT+TGG + Chr5:5557881-5557900 None:intergenic 40.0%
GACTTCATTGTACATTGCAC+AGG - Chr5:5556882-5556901 MsG0580024496.01.T01:intron 40.0%
GATAAGCTTGGAAAGTTACC+TGG - Chr5:5556656-5556675 MsG0580024496.01.T01:CDS 40.0%
GCCGAATTACCAGCTAATAA+TGG + Chr5:5557850-5557869 None:intergenic 40.0%
GGAAAAACATGCTTGTAGAG+CGG + Chr5:5557263-5557282 None:intergenic 40.0%
GGAATGTGTATTCTTGCAGT+GGG - Chr5:5558545-5558564 MsG0580024496.01.T01:intron 40.0%
GGTTGTGATTCACTGAGATA+AGG - Chr5:5558053-5558072 MsG0580024496.01.T01:intron 40.0%
GTGGGCATGATGAATTTCAT+TGG + Chr5:5555053-5555072 None:intergenic 40.0%
TACTTGATCTTGAAAGGGCT+CGG + Chr5:5556237-5556256 None:intergenic 40.0%
TAGATCGCATGGAAGAAGAA+GGG - Chr5:5558165-5558184 MsG0580024496.01.T01:intron 40.0%
TCCAACACGATTGTCATCTA+CGG + Chr5:5557240-5557259 None:intergenic 40.0%
TGCAATGTTATAGCAACGAC+GGG - Chr5:5557032-5557051 MsG0580024496.01.T01:CDS 40.0%
TGCAGTTCAAACAAAGGGAA+AGG + Chr5:5557338-5557357 None:intergenic 40.0%
TGCTCTGCAGTTCAAACAAA+GGG + Chr5:5557343-5557362 None:intergenic 40.0%
TGGAGGTTAACAGATCTATG+GGG + Chr5:5557830-5557849 None:intergenic 40.0%
TGTTCATGAAGATGGTACAG+TGG - Chr5:5556830-5556849 MsG0580024496.01.T01:intron 40.0%
TTACTCCACCGACAATTCAT+CGG + Chr5:5557981-5558000 None:intergenic 40.0%
TTAGTCATCTCCTCTTCTGA+AGG + Chr5:5557404-5557423 None:intergenic 40.0%
TTGCAGAACCGTCTATATCA+TGG + Chr5:5557939-5557958 None:intergenic 40.0%
TTGCTCTGCAGTTCAAACAA+AGG + Chr5:5557344-5557363 None:intergenic 40.0%
TTGGACATTGTCGGTAAATG+TGG + Chr5:5557010-5557029 None:intergenic 40.0%
TTTCCTTGAAACCAATGGTG+TGG - Chr5:5557211-5557230 MsG0580024496.01.T01:CDS 40.0%
TTTCCTTTGTTGGGTTACCT+TGG - Chr5:5557303-5557322 MsG0580024496.01.T01:intron 40.0%
! ATGTTTGAAATCCGGTAGAG+TGG - Chr5:5557881-5557900 MsG0580024496.01.T01:intron 40.0%
! CTACAAGCATGTTTTTCCAC+CGG - Chr5:5557265-5557284 MsG0580024496.01.T01:CDS 40.0%
! GGTACAGTGGTTTTCAAAGA+TGG - Chr5:5556843-5556862 MsG0580024496.01.T01:intron 40.0%
! TGGTTCGGAGTGAATTGTAT+AGG + Chr5:5555283-5555302 None:intergenic 40.0%
!! ACACCATTGGTTTCAAGGAA+AGG + Chr5:5557212-5557231 None:intergenic 40.0%
!! GATGCTGTTGTTGTTTGCAA+TGG - Chr5:5555550-5555569 MsG0580024496.01.T01:intron 40.0%
!! GGGTAGGTTGTAGTTCTAAT+AGG - Chr5:5556548-5556567 MsG0580024496.01.T01:CDS 40.0%
!! TTGAGATTGGTGATTTGGTG+AGG - Chr5:5555431-5555450 MsG0580024496.01.T01:intron 40.0%
!!! TAGCTCATTTGGTTTTGCGT+TGG - Chr5:5556349-5556368 MsG0580024496.01.T01:intron 40.0%
AACCCAACAAAGGAAAGCCA+TGG + Chr5:5557299-5557318 None:intergenic 45.0%
AACTGGATTGCTGATCAGTG+CGG - Chr5:5558576-5558595 MsG0580024496.01.T01:CDS 45.0%
ACCGTAGATGACAATCGTGT+TGG - Chr5:5557236-5557255 MsG0580024496.01.T01:CDS 45.0%
ACTTGATCTTGAAAGGGCTC+GGG + Chr5:5556236-5556255 None:intergenic 45.0%
AGAAGAATTGGGCGGTTCAT+GGG - Chr5:5555190-5555209 MsG0580024496.01.T01:CDS 45.0%
AGTTTCCGATGAATTGTCGG+TGG - Chr5:5557973-5557992 MsG0580024496.01.T01:intron 45.0%
ATGGACGGTGAGATCTAGAT+CGG - Chr5:5555498-5555517 MsG0580024496.01.T01:intron 45.0%
ATGGTGCGTTACATTGGACA+CGG + Chr5:5556451-5556470 None:intergenic 45.0%
CACACTCATAATATGGGCAC+GGG - Chr5:5557476-5557495 MsG0580024496.01.T01:intron 45.0%
CCAGGAATATTGGGAAGTCT+CGG + Chr5:5555589-5555608 None:intergenic 45.0%
CTACTTGATGTCCTTCTCGT+CGG + Chr5:5555154-5555173 None:intergenic 45.0%
CTAGATCGCATGGAAGAAGA+AGG - Chr5:5558164-5558183 MsG0580024496.01.T01:intron 45.0%
CTCCATGGCTTTCCTTTGTT+GGG - Chr5:5557294-5557313 MsG0580024496.01.T01:CDS 45.0%
CTTCCAAGGTAACCCAACAA+AGG + Chr5:5557309-5557328 None:intergenic 45.0%
CTTTGTTGGGTTACCTTGGA+AGG - Chr5:5557307-5557326 MsG0580024496.01.T01:intron 45.0%
GAATCGTAATCGTAAGCCAC+AGG + Chr5:5554983-5555002 None:intergenic 45.0%
GACAATTCATTGTTCGACGG+CGG + Chr5:5558013-5558032 None:intergenic 45.0%
GAGAAGAAAGGGGAATTGAC+GGG + Chr5:5557699-5557718 None:intergenic 45.0%
GCACACTCATAATATGGGCA+CGG - Chr5:5557475-5557494 MsG0580024496.01.T01:intron 45.0%
GCCGTCGAACAATGAATTGT+CGG - Chr5:5558012-5558031 MsG0580024496.01.T01:intron 45.0%
GCTCGGGTGTTCTGTAATTA+TGG + Chr5:5556220-5556239 None:intergenic 45.0%
GGAGAAGAAAGGGGAATTGA+CGG + Chr5:5557700-5557719 None:intergenic 45.0%
GTCGAACAATGAATTGTCGG+TGG - Chr5:5558015-5558034 MsG0580024496.01.T01:intron 45.0%
GTGAATTGTATAGGCTCGAG+TGG + Chr5:5555274-5555293 None:intergenic 45.0%
GTGTTCCTGCTATGGAAGAA+TGG - Chr5:5558598-5558617 MsG0580024496.01.T01:CDS 45.0%
GTTCTCCATTCTTCCATAGC+AGG + Chr5:5558606-5558625 None:intergenic 45.0%
TACCTGGCCATGATAACATG+TGG - Chr5:5556672-5556691 MsG0580024496.01.T01:intron 45.0%
TAGGAAAACGCATCCGACAA+CGG + Chr5:5557746-5557765 None:intergenic 45.0%
TCAAGTTACAGCCACTCTAC+CGG + Chr5:5557895-5557914 None:intergenic 45.0%
TCGAGAAATATCAACCGCAC+TGG + Chr5:5556582-5556601 None:intergenic 45.0%
TGAGACTTATCGTGACGAGT+GGG - Chr5:5558668-5558687 MsG0580024496.01.T01:CDS 45.0%
TGCAGTGGGACTACAATAAC+TGG - Chr5:5558559-5558578 MsG0580024496.01.T01:CDS 45.0%
TGCTTGACAGCAGTGAATCA+CGG - Chr5:5558304-5558323 MsG0580024496.01.T01:CDS 45.0%
TGTTCGATGGTGCGTTACAT+TGG + Chr5:5556457-5556476 None:intergenic 45.0%
TGTTTGAACTGCAGAGCAAG+TGG - Chr5:5557345-5557364 MsG0580024496.01.T01:intron 45.0%
TTCGAGCGAGGAGAAGAATT+GGG - Chr5:5555179-5555198 MsG0580024496.01.T01:CDS 45.0%
TTTGGTGAGGTTGAAGACAG+AGG - Chr5:5555444-5555463 MsG0580024496.01.T01:intron 45.0%
! AATTTGCCTCGGGAGAGTAT+GGG - Chr5:5555302-5555321 MsG0580024496.01.T01:intron 45.0%
! CATCTCCTCTTCTGAAGGAA+GGG + Chr5:5557399-5557418 None:intergenic 45.0%
! GGAGGTTGTTGATAAAACGG+CGG + Chr5:5557783-5557802 None:intergenic 45.0%
! GGTTGATATTTCTCGAGACG+TGG - Chr5:5556586-5556605 MsG0580024496.01.T01:CDS 45.0%
! TCATCTCCTCTTCTGAAGGA+AGG + Chr5:5557400-5557419 None:intergenic 45.0%
!! TCACCACACCATTGGTTTCA+AGG + Chr5:5557217-5557236 None:intergenic 45.0%
!!! AGAAATAATTTTTTTAAAAA+AGG - Chr5:5556096-5556115 MsG0580024496.01.T01:intron 5.0%
!!! TTATATCAAATTTTTTTATT+AGG - Chr5:5557531-5557550 MsG0580024496.01.T01:intron 5.0%
AAGACAGAGGTGGTGTTTGC+TGG - Chr5:5555457-5555476 MsG0580024496.01.T01:intron 50.0%
ACTCCGAACCAATTTGCCTC+GGG - Chr5:5555292-5555311 MsG0580024496.01.T01:intron 50.0%
AGACAGAGGTGGTGTTTGCT+GGG - Chr5:5555458-5555477 MsG0580024496.01.T01:intron 50.0%
AGCCACATGTTATCATGGCC+AGG + Chr5:5556677-5556696 None:intergenic 50.0%
AGTGGATAAGCTTCCGGTTC+GGG + Chr5:5555256-5555275 None:intergenic 50.0%
ATCTACGGTCACCACACCAT+TGG + Chr5:5557225-5557244 None:intergenic 50.0%
ATTAGCTGGTAATTCGGCGG+CGG - Chr5:5557852-5557871 MsG0580024496.01.T01:intron 50.0%
ATTGGACACGGACGTCACTT+TGG + Chr5:5556439-5556458 None:intergenic 50.0%
CAAGTAGTAGTCTTCGAGCG+AGG - Chr5:5555167-5555186 MsG0580024496.01.T01:CDS 50.0%
CAATTTGCCTCGGGAGAGTA+TGG - Chr5:5555301-5555320 MsG0580024496.01.T01:intron 50.0%
CACTCCGAACCAATTTGCCT+CGG - Chr5:5555291-5555310 MsG0580024496.01.T01:CDS 50.0%
CACTCGTCACGATAAGTCTC+AGG + Chr5:5558669-5558688 None:intergenic 50.0%
CAGGCATTAATGCATGGCCA+GGG - Chr5:5556180-5556199 MsG0580024496.01.T01:intron 50.0%
CATACTCTCCCGAGGCAAAT+TGG + Chr5:5555303-5555322 None:intergenic 50.0%
CATTGCCCTTCCTTCAGAAG+AGG - Chr5:5557391-5557410 MsG0580024496.01.T01:intron 50.0%
CCGAGACTTCCCAATATTCC+TGG - Chr5:5555586-5555605 MsG0580024496.01.T01:intron 50.0%
CTGAGACTTATCGTGACGAG+TGG - Chr5:5558667-5558686 MsG0580024496.01.T01:CDS 50.0%
CTTCGAGCGAGGAGAAGAAT+TGG - Chr5:5555178-5555197 MsG0580024496.01.T01:CDS 50.0%
GAGAAGAATTGGGCGGTTCA+TGG - Chr5:5555189-5555208 MsG0580024496.01.T01:CDS 50.0%
GAGATCTAGATCGGTGGAGA+GGG - Chr5:5555507-5555526 MsG0580024496.01.T01:intron 50.0%
GAGTGGATAAGCTTCCGGTT+CGG + Chr5:5555257-5555276 None:intergenic 50.0%
GCTCCATGGCTTTCCTTTGT+TGG - Chr5:5557293-5557312 MsG0580024496.01.T01:CDS 50.0%
GGCGGTGACAACACAGATTT+AGG + Chr5:5557765-5557784 None:intergenic 50.0%
TCAGGCATTAATGCATGGCC+AGG - Chr5:5556179-5556198 MsG0580024496.01.T01:intron 50.0%
TCATAATATGGGCACGGGCT+CGG - Chr5:5557481-5557500 MsG0580024496.01.T01:intron 50.0%
TCATCAACAACCGCCGTTGT+CGG - Chr5:5557730-5557749 MsG0580024496.01.T01:intron 50.0%
TCTCCCGAGGCAAATTGGTT+CGG + Chr5:5555298-5555317 None:intergenic 50.0%
TGAGATCTAGATCGGTGGAG+AGG - Chr5:5555506-5555525 MsG0580024496.01.T01:intron 50.0%
TGGAAGAAGAAGGGACGACA+AGG - Chr5:5558174-5558193 MsG0580024496.01.T01:intron 50.0%
TGGCTATGCATTTGCTTCCC+TGG + Chr5:5556200-5556219 None:intergenic 50.0%
TGTAGAAGGTTCCCGAGTCA+TGG - Chr5:5555371-5555390 MsG0580024496.01.T01:intron 50.0%
! AAAGGGGAATTGACGGGTCT+AGG + Chr5:5557693-5557712 None:intergenic 50.0%
! AAGGGGAATTGACGGGTCTA+GGG + Chr5:5557692-5557711 None:intergenic 50.0%
ACCGGGAAGGTGGAGAAGAA+AGG + Chr5:5557711-5557730 None:intergenic 55.0%
AGAATCCGACCCACTCGGTT+TGG - Chr5:5555229-5555248 MsG0580024496.01.T01:CDS 55.0%
AGTGGGTCGGATTCTATCGC+TGG + Chr5:5555224-5555243 None:intergenic 55.0%
ATCGGTGGAGAGGGAATGTG+TGG - Chr5:5555516-5555535 MsG0580024496.01.T01:intron 55.0%
CAACAACCTCCTGAGACCGT+TGG - Chr5:5557792-5557811 MsG0580024496.01.T01:intron 55.0%
CCCTTTCTTCTCCACCTTCC+CGG - Chr5:5557707-5557726 MsG0580024496.01.T01:intron 55.0%
CCGGGAAGGTGGAGAAGAAA+GGG + Chr5:5557710-5557729 None:intergenic 55.0%
CGGGAAGGTGGAGAAGAAAG+GGG + Chr5:5557709-5557728 None:intergenic 55.0%
CTGCAGAGCAAGTGGATAGC+TGG - Chr5:5557353-5557372 MsG0580024496.01.T01:intron 55.0%
GAAAACGCATCCGACAACGG+CGG + Chr5:5557743-5557762 None:intergenic 55.0%
GAAAGCCATGGAGCTAACGC+CGG + Chr5:5557287-5557306 None:intergenic 55.0%
GACGGTGAGATCTAGATCGG+TGG - Chr5:5555501-5555520 MsG0580024496.01.T01:intron 55.0%
GAGCGAGGAGAAGAATTGGG+CGG - Chr5:5555182-5555201 MsG0580024496.01.T01:CDS 55.0%
GCGATAGAATCCGACCCACT+CGG - Chr5:5555224-5555243 MsG0580024496.01.T01:CDS 55.0%
GGCTCGAGTGGATAAGCTTC+CGG + Chr5:5555262-5555281 None:intergenic 55.0%
GGGAAAGGAGCAACCTTCCA+AGG + Chr5:5557323-5557342 None:intergenic 55.0%
GGGTGAAGGTGGGAAATGGA+CGG - Chr5:5555483-5555502 MsG0580024496.01.T01:intron 55.0%
GGTGAGGTTGAAGACAGAGG+TGG - Chr5:5555447-5555466 MsG0580024496.01.T01:intron 55.0%
TCAGTGCGGTGTTCCTGCTA+TGG - Chr5:5558590-5558609 MsG0580024496.01.T01:CDS 55.0%
! AGGGGAATTGACGGGTCTAG+GGG + Chr5:5557691-5557710 None:intergenic 55.0%
! GACAGAGGTGGTGTTTGCTG+GGG - Chr5:5555459-5555478 MsG0580024496.01.T01:intron 55.0%
! GGGTGTGAGAAGTGGTGTTG+CGG + Chr5:5555075-5555094 None:intergenic 55.0%
!! AACGGCGGTTGTTGATGACC+GGG + Chr5:5557728-5557747 None:intergenic 55.0%
!! AATAGGTGGTGCTGCCAGTG+CGG - Chr5:5556565-5556584 MsG0580024496.01.T01:CDS 55.0%
!! CAACGGCGGTTGTTGATGAC+CGG + Chr5:5557729-5557748 None:intergenic 55.0%
!! GTGAGAAGTGGTGTTGCGGT+GGG + Chr5:5555071-5555090 None:intergenic 55.0%
!! GTTGTTGATGACCGGGAAGG+TGG + Chr5:5557721-5557740 None:intergenic 55.0%
!! TGTGAGAAGTGGTGTTGCGG+TGG + Chr5:5555072-5555091 None:intergenic 55.0%
AATCCTCCGCCAACGGTCTC+AGG + Chr5:5557804-5557823 None:intergenic 60.0%
CAACCTCCTGAGACCGTTGG+CGG - Chr5:5557795-5557814 MsG0580024496.01.T01:intron 60.0%
CGGAAACCCATACTCTCCCG+AGG + Chr5:5555311-5555330 None:intergenic 60.0%
GGGGAACAATCCTCCGCCAA+CGG + Chr5:5557811-5557830 None:intergenic 60.0%
GGGTGGGTGAAGGTGGGAAA+TGG - Chr5:5555479-5555498 MsG0580024496.01.T01:intron 60.0%
GGTTCGGGTCCAAACCGAGT+GGG + Chr5:5555241-5555260 None:intergenic 60.0%
TTCCACCGGCGTTAGCTCCA+TGG - Chr5:5557279-5557298 MsG0580024496.01.T01:CDS 60.0%
TTGCTGGGGTGGGTGAAGGT+GGG - Chr5:5555473-5555492 MsG0580024496.01.T01:intron 60.0%
TTTGCTGGGGTGGGTGAAGG+TGG - Chr5:5555472-5555491 MsG0580024496.01.T01:intron 60.0%
! AGAGGTGGTGTTTGCTGGGG+TGG - Chr5:5555462-5555481 MsG0580024496.01.T01:intron 60.0%
! GAGGTGGTGTTTGCTGGGGT+GGG - Chr5:5555463-5555482 MsG0580024496.01.T01:intron 60.0%
! GCGTGCTGCTACTAAGCCTC+CGG + Chr5:5555126-5555145 None:intergenic 60.0%
! GTGTTTGCTGGGGTGGGTGA+AGG - Chr5:5555469-5555488 MsG0580024496.01.T01:intron 60.0%
!! CACTCGGTTTGGACCCGAAC+CGG - Chr5:5555240-5555259 MsG0580024496.01.T01:CDS 60.0%
!! GCGGTTGTTGATGACCGGGA+AGG + Chr5:5557724-5557743 None:intergenic 60.0%
ACTTCTCACACCCCGCCACG+TGG - Chr5:5555082-5555101 MsG0580024496.01.T01:three_prime_UTR 65.0%
AGCCATGGAGCTAACGCCGG+TGG + Chr5:5557284-5557303 None:intergenic 65.0%
CACGGGCTCGGCCAATGTTC+AGG - Chr5:5557493-5557512 MsG0580024496.01.T01:intron 65.0%
CGGGTCCAAACCGAGTGGGT+CGG + Chr5:5555237-5555256 None:intergenic 65.0%
TGCTACTAAGCCTCCGGCGC+CGG + Chr5:5555120-5555139 None:intergenic 65.0%
! ACGTGGCGGGGTGTGAGAAG+TGG + Chr5:5555083-5555102 None:intergenic 65.0%
! CGGTTCGGGTCCAAACCGAG+TGG + Chr5:5555242-5555261 None:intergenic 65.0%
CACGTGGCAGTCATCGGCGC+CGG - Chr5:5555098-5555117 MsG0580024496.01.T01:three_prime_UTR 70.0%
CCCCGCCACGTGGCAGTCAT+CGG - Chr5:5555092-5555111 MsG0580024496.01.T01:three_prime_UTR 70.0%
CCGATGACTGCCACGTGGCG+GGG + Chr5:5555095-5555114 None:intergenic 70.0%
CCTCCGCCAACGGTCTCAGG+AGG + Chr5:5557801-5557820 None:intergenic 70.0%
CCTCCTGAGACCGTTGGCGG+AGG - Chr5:5557798-5557817 MsG0580024496.01.T01:intron 70.0%
CGCCGATGACTGCCACGTGG+CGG + Chr5:5555097-5555116 None:intergenic 70.0%
GCACGCGAGCTCCGACGAGA+AGG - Chr5:5555140-5555159 MsG0580024496.01.T01:CDS 70.0%
GCCGATGACTGCCACGTGGC+GGG + Chr5:5555096-5555115 None:intergenic 70.0%
!! CGGCGCCGATGACTGCCACG+TGG + Chr5:5555100-5555119 None:intergenic 75.0%
!!! GCAGTCATCGGCGCCGGCGC+CGG - Chr5:5555104-5555123 MsG0580024496.01.T01:three_prime_UTR 80.0%
!!! GTCATCGGCGCCGGCGCCGG+AGG - Chr5:5555107-5555126 MsG0580024496.01.T01:three_prime_UTR 85.0%
Chromosome Type Strat End Strand Name
Chr5 gene 5554947 5558927 5554947 ID=MsG0580024496.01;Name=MsG0580024496.01
Chr5 mRNA 5554947 5558927 5554947 ID=MsG0580024496.01.T01;Parent=MsG0580024496.01;Name=MsG0580024496.01.T01;_AED=0.32;_eAED=0.32;_QI=0|0.83|0.71|1|1|1|7|181|445
Chr5 exon 5554947 5555310 5554947 ID=MsG0580024496.01.T01:exon:19124;Parent=MsG0580024496.01.T01
Chr5 exon 5556360 5556681 5556360 ID=MsG0580024496.01.T01:exon:19123;Parent=MsG0580024496.01.T01
Chr5 exon 5556970 5557052 5556970 ID=MsG0580024496.01.T01:exon:19122;Parent=MsG0580024496.01.T01
Chr5 exon 5557168 5557320 5557168 ID=MsG0580024496.01.T01:exon:19121;Parent=MsG0580024496.01.T01
Chr5 exon 5557621 5557691 5557621 ID=MsG0580024496.01.T01:exon:19120;Parent=MsG0580024496.01.T01
Chr5 exon 5558267 5558421 5558267 ID=MsG0580024496.01.T01:exon:19119;Parent=MsG0580024496.01.T01
Chr5 exon 5558557 5558927 5558557 ID=MsG0580024496.01.T01:exon:19118;Parent=MsG0580024496.01.T01
Chr5 CDS 5558557 5558927 5558557 ID=MsG0580024496.01.T01:cds;Parent=MsG0580024496.01.T01
Chr5 CDS 5558267 5558421 5558267 ID=MsG0580024496.01.T01:cds;Parent=MsG0580024496.01.T01
Chr5 CDS 5557621 5557691 5557621 ID=MsG0580024496.01.T01:cds;Parent=MsG0580024496.01.T01
Chr5 CDS 5557168 5557320 5557168 ID=MsG0580024496.01.T01:cds;Parent=MsG0580024496.01.T01
Chr5 CDS 5556970 5557052 5556970 ID=MsG0580024496.01.T01:cds;Parent=MsG0580024496.01.T01
Chr5 CDS 5556360 5556681 5556360 ID=MsG0580024496.01.T01:cds;Parent=MsG0580024496.01.T01
Chr5 CDS 5555128 5555310 5555128 ID=MsG0580024496.01.T01:cds;Parent=MsG0580024496.01.T01
Chr5 three_prime_UTR 5554947 5555127 5554947 ID=MsG0580024496.01.T01:three_prime_utr;Parent=MsG0580024496.01.T01
Gene Sequence

>MsG0580024496.01.T01

ATGAATGAACATGATGATACTGTAATCATAATTCCTGTGGCTTACGATTACGATTCTATTCCATTGATTCTTCCATTTATTAACAACACCAAAATTGTTCACGCCAATGAAATTCATCATGCCCACCGCAACACCACTTCTCACACCCCGCCACGTGGCAGTCATCGGCGCCGGCGCCGGAGGCTTAGTAGCAGCACGCGAGCTCCGACGAGAAGGACATCAAGTAGTAGTCTTCGAGCGAGGAGAAGAATTGGGCGGTTCATGGGTCTATACTCCAGCGATAGAATCCGACCCACTCGGTTTGGACCCGAACCGGAAGCTTATCCACTCGAGCCTATACAATTCACTCCGAACCAATTTGCCTCGGGAGAGTTGAAGACAGAGGTGGTGTTTGCTGGGGTGGGTGAAGGTGGGAAATGGACGGTGAGATCTAGATCGGTGGAGAGGGAATGTGTGGATGAGATTTACGATGCTGTTGTTGTTTGCAATGGACATTATTTTCAACCGAGACTTCCCAATATTCCTGGCATTAATGCATGGCCAGGGAAGCAAATGCATAGCCATAATTACAGAACACCCGAGCCCTTTCAAGATCAAGTTGTAGTTCTAATAGGTGGTGCTGCCAGTGCGGTTGATATTTCTCGAGACGTGGCAACCGTTGCTAAAGAAGTTCATATTGCAGCTAGATCTGTTGAAGAAGATAAGCTTGGAAAGTTACCTGGCCATGATAACATGTGGCTTCATTCTATGATTGACAGTGTTCATGAAGATGGTACAGTGGTTTTCAAAGATGGAAATGCAGTTATTGCTGACTTCATTGTACATTGCACAGGGTACAAGTATGATTTTCCTTTCCTTGAAACCAATGGTGTGGTGACCGTAGATGACAATCGTGTTGGACCGCTCTACAAGCATGTTTTTCCACCGGCGTTAGCTCCATGGCTTTCCTTTGTTGGGTTACCTTGGAAGGTTGCTCCTTTCCCTTTGTTTGAACTGCAGAGCAAGTGGATAGCTGGAGTTTTGTCTAATCGCATTGCCCTTCCTTCAGAAGAGGAGATGACTAAAGATATTGAGGCTTTTTACTTGTCACTTGAAGAATCTGGCATTCCTAAGAGGCACACTCATAATATGGGCACGGGCTCGGCCAATGTTCAGTGGGACTACAATAACTGGATTGCTGATCAGTGCGGTGTTCCTGCTATGGAAGAATGGAGAACGCAAATGTATATGGCTACATCTAAGAACAGGCTCTTGCGACCTGAGACTTATCGTGACGAGTGGGATGATGATGACATTGTTCAACAAGCTGAGCATGAATTTGCTAATTATCAGATATAA

Protein sequence

>MsG0580024496.01.T01

MNEHDDTVIIIPVAYDYDSIPLILPFINNTKIVHANEIHHAHRNTTSHTPPRGSHRRRRRRLSSSTRAPTRRTSSSSLRARRRIGRFMGLYSSDRIRPTRFGPEPEAYPLEPIQFTPNQFASGELKTEVVFAGVGEGGKWTVRSRSVERECVDEIYDAVVVCNGHYFQPRLPNIPGINAWPGKQMHSHNYRTPEPFQDQVVVLIGGAASAVDISRDVATVAKEVHIAARSVEEDKLGKLPGHDNMWLHSMIDSVHEDGTVVFKDGNAVIADFIVHCTGYKYDFPFLETNGVVTVDDNRVGPLYKHVFPPALAPWLSFVGLPWKVAPFPLFELQSKWIAGVLSNRIALPSEEEMTKDIEAFYLSLEESGIPKRHTHNMGTGSANVQWDYNNWIADQCGVPAMEEWRTQMYMATSKNRLLRPETYRDEWDDDDIVQQAEHEFANYQI*