AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280010803.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010803.01.T01 MTR_2g090960 98.746 319 3 1 1 319 1 318 0.0 648
MsG0280010803.01.T01 MTR_4g079580 54.142 338 113 12 3 315 1 321 1.30e-103 308
MsG0280010803.01.T01 MTR_8g463380 42.711 391 137 13 7 317 37 420 1.44e-76 242
MsG0280010803.01.T01 MTR_2g078200 39.881 336 129 11 7 323 3 284 9.70e-49 166
MsG0280010803.01.T01 MTR_7g015010 62.162 74 28 0 18 91 51 124 6.19e-24 101
MsG0280010803.01.T01 MTR_6g015350 65.714 70 21 1 18 87 43 109 8.24e-23 97.8
MsG0280010803.01.T01 MTR_4g109660 61.765 68 26 0 18 85 50 117 5.43e-21 92.0
MsG0280010803.01.T01 MTR_3g026050 58.824 68 28 0 18 85 51 118 2.11e-19 88.6
MsG0280010803.01.T01 MTR_6g017055 50.746 67 33 0 18 84 120 186 2.14e-16 80.1
MsG0280010803.01.T01 MTR_1g103380 53.333 60 28 0 23 82 200 259 6.49e-16 79.0
MsG0280010803.01.T01 MTR_7g018500 54.386 57 26 0 26 82 122 178 2.13e-14 73.9
MsG0280010803.01.T01 MTR_4g111935 49.206 63 32 0 20 82 128 190 7.30e-14 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010803.01.T01 AT3G15030 40.731 383 140 12 8 313 29 401 3.32e-72 230
MsG0280010803.01.T01 AT3G15030 40.731 383 140 12 8 313 29 401 3.32e-72 230
MsG0280010803.01.T01 AT3G15030 40.731 383 140 12 8 313 29 401 3.32e-72 230
MsG0280010803.01.T01 AT3G15030 40.731 383 140 12 8 313 29 401 3.32e-72 230
MsG0280010803.01.T01 AT1G53230 43.220 354 147 11 8 316 33 377 2.64e-67 217
MsG0280010803.01.T01 AT1G53230 43.220 354 147 11 8 316 33 377 2.64e-67 217
MsG0280010803.01.T01 AT2G31070 46.032 252 85 11 1 229 1 224 1.48e-52 177
MsG0280010803.01.T01 AT4G18390 70.588 68 20 0 18 85 36 103 2.07e-26 108
MsG0280010803.01.T01 AT4G18390 70.588 68 20 0 18 85 36 103 2.07e-26 108
MsG0280010803.01.T01 AT3G02150 61.905 84 27 1 3 86 58 136 7.42e-24 99.8
MsG0280010803.01.T01 AT3G02150 61.905 84 27 1 3 86 58 136 1.30e-23 100
MsG0280010803.01.T01 AT1G30210 66.176 68 23 0 18 85 44 111 1.89e-22 96.7
MsG0280010803.01.T01 AT1G30210 66.176 68 23 0 18 85 44 111 1.89e-22 96.7
MsG0280010803.01.T01 AT5G60970 60.000 70 25 1 18 87 57 123 1.48e-20 92.0
MsG0280010803.01.T01 AT5G08070 58.333 72 28 1 18 87 27 98 2.15e-20 89.4
MsG0280010803.01.T01 AT5G08070 58.333 72 28 1 18 87 27 98 2.15e-20 89.4
MsG0280010803.01.T01 AT1G67260 54.545 66 30 0 19 84 82 147 1.03e-17 83.6
MsG0280010803.01.T01 AT1G67260 54.545 66 30 0 19 84 82 147 1.03e-17 83.6
MsG0280010803.01.T01 AT1G68800 41.573 89 52 0 20 108 108 196 1.21e-17 83.6
MsG0280010803.01.T01 AT1G68800 50.769 65 32 0 20 84 108 172 1.32e-17 83.2
MsG0280010803.01.T01 AT1G67260 54.545 66 30 0 19 84 82 147 1.34e-17 83.2
MsG0280010803.01.T01 AT3G18550 50.000 64 32 0 19 82 143 206 6.26e-14 72.8
MsG0280010803.01.T01 AT3G18550 50.000 64 32 0 19 82 143 206 6.53e-14 72.8
MsG0280010803.01.T01 AT3G18550 50.000 64 32 0 19 82 143 206 6.53e-14 72.8
MsG0280010803.01.T01 AT3G18550 50.000 64 32 0 19 82 143 206 7.07e-14 72.8

Find 66 sgRNAs with CRISPR-Local

Find 115 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATCCAACAAGACAAATTT+TGG 0.086714 2:+75236625 None:intergenic
TATGAATAGAACCGGGTTTA+TGG 0.199355 2:-75237419 MsG0280010803.01.T01:CDS
GTTAATTCGCCTGCGTTTCT+AGG 0.251584 2:-75237397 MsG0280010803.01.T01:CDS
TGTAACTCTTCTGTTGCATT+TGG 0.281307 2:+75237820 None:intergenic
ATTCCCCAAGCTTCTATCTT+TGG 0.299538 2:-75237244 MsG0280010803.01.T01:CDS
CATCATAACCATAACCATTC+AGG 0.300787 2:-75237694 MsG0280010803.01.T01:CDS
TCTTCTGTTGCATTTGGAAT+TGG 0.308776 2:+75237826 None:intergenic
ATACCCAAAATTTGTCTTGT+TGG 0.314402 2:-75236629 MsG0280010803.01.T01:CDS
TTAATCTTCCAATGTCTTCA+TGG 0.315908 2:+75236670 None:intergenic
TGTATTCCTGCTAGAATTCA+AGG 0.342553 2:-75237187 MsG0280010803.01.T01:CDS
GATTTGATGCTAATTATAAC+AGG 0.345674 2:-75237465 MsG0280010803.01.T01:CDS
TGTTGATTGGCTAATCAAAA+AGG 0.358266 2:-75237893 MsG0280010803.01.T01:CDS
ATTATAACAGGATTGTGAAT+TGG 0.376707 2:-75237453 MsG0280010803.01.T01:CDS
TTCAAGGAGGCCACATTGTA+AGG 0.379947 2:-75238056 MsG0280010803.01.T01:CDS
GAATGAAACCTGAATGGTTA+TGG 0.404262 2:+75237686 None:intergenic
GCAGAACAATCAGAATCTTC+TGG 0.415389 2:-75237739 MsG0280010803.01.T01:CDS
AAGCTTCTATCTTTGGTAGC+AGG 0.417259 2:-75237237 MsG0280010803.01.T01:CDS
AACAACTCAACACAGGATCT+TGG 0.421186 2:-75237562 MsG0280010803.01.T01:CDS
GCTACCAAAGATAGAAGCTT+GGG 0.431520 2:+75237240 None:intergenic
GGCCACATTGTAAGGGCAAC+AGG 0.434632 2:-75238048 MsG0280010803.01.T01:CDS
ACAGCTGATATGAATAGAAC+CGG 0.440232 2:-75237427 MsG0280010803.01.T01:CDS
CATTTGAAGCTGAATTGTCT+TGG 0.440619 2:+75237521 None:intergenic
TTTCTGTCTGATGCTTTGAC+AGG 0.443796 2:-75237214 MsG0280010803.01.T01:CDS
TCCACCGAGGCATCGGCAAT+TGG 0.446878 2:+75237295 None:intergenic
TTTCACCATCACTTCGTCCT+TGG 0.447022 2:-75237327 MsG0280010803.01.T01:CDS
TAGAAAAGACAGACATAGTA+AGG 0.449768 2:-75238025 MsG0280010803.01.T01:CDS
GACTCACCAACAGAAGTTGT+TGG 0.472891 2:+75237628 None:intergenic
GGAGAAATAGTTCAAGTTCA+AGG 0.475915 2:-75238072 MsG0280010803.01.T01:CDS
TCGCCTGCGTTTCTAGGCCA+AGG 0.487784 2:-75237391 MsG0280010803.01.T01:CDS
GCATTTGGAATTGGATTCCA+TGG 0.487862 2:+75237835 None:intergenic
TAATTAGCATCAAATCCAAC+AGG 0.490970 2:+75237472 None:intergenic
TTCTCTGGATCAAATCCTGT+TGG 0.495922 2:-75237487 MsG0280010803.01.T01:CDS
GACCGAGTAAAGCTGTTGAT+TGG 0.496508 2:-75237906 MsG0280010803.01.T01:CDS
TGCTACCAAAGATAGAAGCT+TGG 0.514624 2:+75237239 None:intergenic
TCCTCACCTTGAATTCTAGC+AGG 0.529084 2:+75237181 None:intergenic
ATGATGATCCACCGAGGCAT+CGG 0.529513 2:+75237288 None:intergenic
AAGACATTGGAAGATTAAGA+TGG 0.529743 2:-75236665 MsG0280010803.01.T01:CDS
AGCCAATCAACAGCTTTACT+CGG 0.548536 2:+75237904 None:intergenic
TTGATTGAATGAAACCTGAA+TGG 0.548923 2:+75237680 None:intergenic
GCCTTTCGGAACCAACTCCA+TGG 0.555596 2:+75237152 None:intergenic
TGCAGTAGAAACAAATGAGA+TGG 0.570074 2:-75237770 MsG0280010803.01.T01:CDS
TATTCCAATTGCCGATGCCT+CGG 0.573796 2:-75237299 MsG0280010803.01.T01:CDS
TCATTCCAAGGACGAAGTGA+TGG 0.591483 2:+75237322 None:intergenic
GAGGATGAGAGCCATGGAGT+TGG 0.593361 2:-75237163 MsG0280010803.01.T01:intron
TTAATGGGAATGAAGAGCAC+AGG 0.595991 2:-75238096 MsG0280010803.01.T01:CDS
TGCAACAGAAGAGTTACAAG+AGG 0.599540 2:-75237815 MsG0280010803.01.T01:CDS
AATCGAACACGTCGATCGCG+AGG 0.600636 2:+75237985 None:intergenic
GCAATTGGAATATCATTCCA+AGG 0.606871 2:+75237310 None:intergenic
TCAAGGAGGCCACATTGTAA+GGG 0.607094 2:-75238055 MsG0280010803.01.T01:CDS
TACCTGTTGCCCTTACAATG+TGG 0.607186 2:+75238046 None:intergenic
TATGATGTTCAAGATCGTCT+CGG 0.607936 2:-75237937 MsG0280010803.01.T01:CDS
TCCAATTGCCGATGCCTCGG+TGG 0.612323 2:-75237296 MsG0280010803.01.T01:CDS
ATGGGAATGAAGAGCACAGG+AGG 0.615936 2:-75238093 MsG0280010803.01.T01:CDS
TCTACACGCCATGAAGACAT+TGG 0.623779 2:-75236678 MsG0280010803.01.T01:CDS
AGTAAGGTATACACTGCGAA+AGG 0.629171 2:-75238009 MsG0280010803.01.T01:CDS
CAAGGTGAGGATGAGAGCCA+TGG 0.637843 2:-75237169 MsG0280010803.01.T01:CDS
GAACCTTGGCCTAGAAACGC+AGG 0.637978 2:+75237388 None:intergenic
TCCTGCTAGAATTCAAGGTG+AGG 0.647750 2:-75237182 MsG0280010803.01.T01:CDS
CAGCTGATATGAATAGAACC+GGG 0.655461 2:-75237426 MsG0280010803.01.T01:CDS
AAGAACAAACAACTCAACAC+AGG 0.662739 2:-75237569 MsG0280010803.01.T01:CDS
CTACCAAAGATAGAAGCTTG+GGG 0.680977 2:+75237241 None:intergenic
AACTTGATCAGCTTCCACCA+TGG 0.681586 2:-75237852 MsG0280010803.01.T01:CDS
AGGCGAATTAACCATAAACC+CGG 0.688672 2:+75237408 None:intergenic
TTTGGAATTGGATTCCATGG+TGG 0.696350 2:+75237838 None:intergenic
GAAATAGTTCAAGTTCAAGG+AGG 0.712935 2:-75238069 MsG0280010803.01.T01:CDS
GTGATTATGATGATCCACCG+AGG 0.797740 2:+75237282 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAGCTATTTAGAATTTTTA+TGG + Chr2:75237493-75237512 None:intergenic 15.0%
!!! TTTTAAACTCTAAAAACAAA+GGG - Chr2:75237647-75237666 MsG0280010803.01.T01:CDS 15.0%
!!! TTTTTAAACTCTAAAAACAA+AGG - Chr2:75237646-75237665 MsG0280010803.01.T01:CDS 15.0%
!! ATAAATACTAATCCAAGAAT+AGG + Chr2:75237462-75237481 None:intergenic 20.0%
!! ATTCTTATTGTGTATTTACA+GGG - Chr2:75238090-75238109 MsG0280010803.01.T01:CDS 20.0%
!! TTCAAGACAGAAATTTAAAA+TGG + Chr2:75237769-75237788 None:intergenic 20.0%
!! TTTGATATTGCGAAAAATTA+CGG - Chr2:75237526-75237545 MsG0280010803.01.T01:CDS 20.0%
!!! TTTATGTTTTTTTAAGCAAC+TGG - Chr2:75237945-75237964 MsG0280010803.01.T01:CDS 20.0%
! ATTATAACAGGATTGTGAAT+TGG - Chr2:75237035-75237054 MsG0280010803.01.T01:intron 25.0%
! CAATGTAAATGGTTACAATA+AGG + Chr2:75237919-75237938 None:intergenic 25.0%
! CTTATTGTAACCATTTACAT+TGG - Chr2:75237917-75237936 MsG0280010803.01.T01:CDS 25.0%
! GATTCTTATTGTGTATTTAC+AGG - Chr2:75238089-75238108 MsG0280010803.01.T01:CDS 25.0%
! GATTTGATGCTAATTATAAC+AGG - Chr2:75237023-75237042 MsG0280010803.01.T01:intron 25.0%
! TACTTTGCTCAATTAATACA+TGG - Chr2:75238045-75238064 MsG0280010803.01.T01:CDS 25.0%
! TTAAATATATCTAGCAGCAT+TGG + Chr2:75237996-75238015 None:intergenic 25.0%
!! AATCCAACAAGACAAATTTT+GGG + Chr2:75237865-75237884 None:intergenic 25.0%
!! ATTTTGCAATTGTCATGAAT+TGG + Chr2:75237674-75237693 None:intergenic 25.0%
!! TAATCCAACAAGACAAATTT+TGG + Chr2:75237866-75237885 None:intergenic 25.0%
!!! ATAAAAAGCACCAATGTAAA+TGG + Chr2:75237930-75237949 None:intergenic 25.0%
!!! CAATTTTTTTCTCCTATTCT+TGG - Chr2:75237447-75237466 MsG0280010803.01.T01:CDS 25.0%
!!! TGTTGGATTAAACTTTTTTG+TGG - Chr2:75237876-75237895 MsG0280010803.01.T01:CDS 25.0%
AAGACATTGGAAGATTAAGA+TGG - Chr2:75237823-75237842 MsG0280010803.01.T01:CDS 30.0%
ATACCCAAAATTTGTCTTGT+TGG - Chr2:75237859-75237878 MsG0280010803.01.T01:CDS 30.0%
CATTGTGAAGTTCATACTAA+TGG + Chr2:75237391-75237410 None:intergenic 30.0%
CGATCTGGATCATAATATTA+AGG + Chr2:75237612-75237631 None:intergenic 30.0%
GGAGAAAAAAATTGAAACTG+TGG + Chr2:75237441-75237460 None:intergenic 30.0%
TAATTAGCATCAAATCCAAC+AGG + Chr2:75237019-75237038 None:intergenic 30.0%
TAGAAAAGACAGACATAGTA+AGG - Chr2:75236463-75236482 MsG0280010803.01.T01:intron 30.0%
TTAATCTTCCAATGTCTTCA+TGG + Chr2:75237821-75237840 None:intergenic 30.0%
TTGATTGAATGAAACCTGAA+TGG + Chr2:75236811-75236830 None:intergenic 30.0%
! AATGATCAAACACTTTTCTC+TGG - Chr2:75236986-75237005 MsG0280010803.01.T01:intron 30.0%
! TGTTGATTGGCTAATCAAAA+AGG - Chr2:75236595-75236614 MsG0280010803.01.T01:intron 30.0%
!!! TTGCAATGTGACCATTTTTT+AGG + Chr2:75237571-75237590 None:intergenic 30.0%
!!! TTTTTTAAGCAACTGGAAGT+AGG - Chr2:75237952-75237971 MsG0280010803.01.T01:CDS 30.0%
!!! TTTTTTCCAACAACTTCTGT+TGG - Chr2:75236854-75236873 MsG0280010803.01.T01:intron 30.0%
AAGAACAAACAACTCAACAC+AGG - Chr2:75236919-75236938 MsG0280010803.01.T01:intron 35.0%
ACAGCTGATATGAATAGAAC+CGG - Chr2:75237061-75237080 MsG0280010803.01.T01:intron 35.0%
CATCATAACCATAACCATTC+AGG - Chr2:75236794-75236813 MsG0280010803.01.T01:intron 35.0%
CGAAAAATTACGGCCAAATA+TGG - Chr2:75237536-75237555 MsG0280010803.01.T01:CDS 35.0%
CTACAATCTTCCATTCTATC+AGG - Chr2:75237411-75237430 MsG0280010803.01.T01:CDS 35.0%
GAATGAAACCTGAATGGTTA+TGG + Chr2:75236805-75236824 None:intergenic 35.0%
GCAATTGGAATATCATTCCA+AGG + Chr2:75237181-75237200 None:intergenic 35.0%
GGCTAATGAAGCCTAAAAAA+TGG - Chr2:75237557-75237576 MsG0280010803.01.T01:CDS 35.0%
GTGATGAGAATTAGAAGAAG+AGG + Chr2:75237365-75237384 None:intergenic 35.0%
TAGGCTTCATTAGCCATATT+TGG + Chr2:75237552-75237571 None:intergenic 35.0%
TATGAATAGAACCGGGTTTA+TGG - Chr2:75237069-75237088 MsG0280010803.01.T01:intron 35.0%
TATGATGTTCAAGATCGTCT+CGG - Chr2:75236551-75236570 MsG0280010803.01.T01:intron 35.0%
TGAGAATTAGAAGAAGAGGA+TGG + Chr2:75237361-75237380 None:intergenic 35.0%
TGCAGTAGAAACAAATGAGA+TGG - Chr2:75236718-75236737 MsG0280010803.01.T01:intron 35.0%
TGTAACTCTTCTGTTGCATT+TGG + Chr2:75236671-75236690 None:intergenic 35.0%
TGTATTCCTGCTAGAATTCA+AGG - Chr2:75237301-75237320 MsG0280010803.01.T01:CDS 35.0%
! CATTTGAAGCTGAATTGTCT+TGG + Chr2:75236970-75236989 None:intergenic 35.0%
! GAAATAGTTCAAGTTCAAGG+AGG - Chr2:75236419-75236438 MsG0280010803.01.T01:intron 35.0%
! GGAGAAATAGTTCAAGTTCA+AGG - Chr2:75236416-75236435 MsG0280010803.01.T01:intron 35.0%
! GTCTTGAATCTTGTTATGCA+GGG - Chr2:75237781-75237800 MsG0280010803.01.T01:CDS 35.0%
! TCTTCTGTTGCATTTGGAAT+TGG + Chr2:75236665-75236684 None:intergenic 35.0%
! TCTTGAATCTTGTTATGCAG+GGG - Chr2:75237782-75237801 MsG0280010803.01.T01:CDS 35.0%
! TGTCTTGAATCTTGTTATGC+AGG - Chr2:75237780-75237799 MsG0280010803.01.T01:CDS 35.0%
!! ATTAATACATGGCTTTGTGC+TGG - Chr2:75238056-75238075 MsG0280010803.01.T01:CDS 35.0%
AACAACTCAACACAGGATCT+TGG - Chr2:75236926-75236945 MsG0280010803.01.T01:intron 40.0%
AGCCAATCAACAGCTTTACT+CGG + Chr2:75236587-75236606 None:intergenic 40.0%
AGGCGAATTAACCATAAACC+CGG + Chr2:75237083-75237102 None:intergenic 40.0%
AGTAAGGTATACACTGCGAA+AGG - Chr2:75236479-75236498 MsG0280010803.01.T01:intron 40.0%
ATGGTGAAAAACTGGACTGA+AGG + Chr2:75237150-75237169 None:intergenic 40.0%
ATTCCCCAAGCTTCTATCTT+TGG - Chr2:75237244-75237263 MsG0280010803.01.T01:CDS 40.0%
CAGCTGATATGAATAGAACC+GGG - Chr2:75237062-75237081 MsG0280010803.01.T01:intron 40.0%
CTACCAAAGATAGAAGCTTG+GGG + Chr2:75237250-75237269 None:intergenic 40.0%
GCAGAACAATCAGAATCTTC+TGG - Chr2:75236749-75236768 MsG0280010803.01.T01:intron 40.0%
GCTACCAAAGATAGAAGCTT+GGG + Chr2:75237251-75237270 None:intergenic 40.0%
TGCAACAGAAGAGTTACAAG+AGG - Chr2:75236673-75236692 MsG0280010803.01.T01:CDS 40.0%
TGCTACCAAAGATAGAAGCT+TGG + Chr2:75237252-75237271 None:intergenic 40.0%
TGGTGAAAAACTGGACTGAA+GGG + Chr2:75237149-75237168 None:intergenic 40.0%
TTCTCTGGATCAAATCCTGT+TGG - Chr2:75237001-75237020 MsG0280010803.01.T01:intron 40.0%
TTTCTGTCTGATGCTTTGAC+AGG - Chr2:75237274-75237293 MsG0280010803.01.T01:CDS 40.0%
! AAGCTTCTATCTTTGGTAGC+AGG - Chr2:75237251-75237270 MsG0280010803.01.T01:CDS 40.0%
! ACGAAGTGATGGTGAAAAAC+TGG + Chr2:75237158-75237177 None:intergenic 40.0%
! GCATTTGGAATTGGATTCCA+TGG + Chr2:75236656-75236675 None:intergenic 40.0%
! TTTGGAATTGGATTCCATGG+TGG + Chr2:75236653-75236672 None:intergenic 40.0%
AAACTTCTGCGACAACGATC+TGG + Chr2:75237627-75237646 None:intergenic 45.0%
AACTTGATCAGCTTCCACCA+TGG - Chr2:75236636-75236655 MsG0280010803.01.T01:CDS 45.0%
AGAAGAAGAGGATGGCCTTT+CGG + Chr2:75237353-75237372 None:intergenic 45.0%
GACCGAGTAAAGCTGTTGAT+TGG - Chr2:75236582-75236601 MsG0280010803.01.T01:intron 45.0%
GACTCACCAACAGAAGTTGT+TGG + Chr2:75236863-75236882 None:intergenic 45.0%
GTGATTATGATGATCCACCG+AGG + Chr2:75237209-75237228 None:intergenic 45.0%
GTTAATTCGCCTGCGTTTCT+AGG - Chr2:75237091-75237110 MsG0280010803.01.T01:intron 45.0%
TACCTGTTGCCCTTACAATG+TGG + Chr2:75236445-75236464 None:intergenic 45.0%
TATTCCAATTGCCGATGCCT+CGG - Chr2:75237189-75237208 MsG0280010803.01.T01:CDS 45.0%
TCAAGGAGGCCACATTGTAA+GGG - Chr2:75236433-75236452 MsG0280010803.01.T01:intron 45.0%
TCATTCCAAGGACGAAGTGA+TGG + Chr2:75237169-75237188 None:intergenic 45.0%
TCCTCACCTTGAATTCTAGC+AGG + Chr2:75237310-75237329 None:intergenic 45.0%
TCCTGCTAGAATTCAAGGTG+AGG - Chr2:75237306-75237325 MsG0280010803.01.T01:CDS 45.0%
TCTACACGCCATGAAGACAT+TGG - Chr2:75237810-75237829 MsG0280010803.01.T01:CDS 45.0%
TTCAAGGAGGCCACATTGTA+AGG - Chr2:75236432-75236451 MsG0280010803.01.T01:intron 45.0%
TTTCACCATCACTTCGTCCT+TGG - Chr2:75237161-75237180 MsG0280010803.01.T01:intron 45.0%
! CTGTGGAGTACCTGATAGAA+TGG + Chr2:75237424-75237443 None:intergenic 45.0%
!!! TTCTGCTTTTTCCGCCCATA+GGG - Chr2:75237120-75237139 MsG0280010803.01.T01:intron 45.0%
ATGATGATCCACCGAGGCAT+CGG + Chr2:75237203-75237222 None:intergenic 50.0%
! ATGGGAATGAAGAGCACAGG+AGG - Chr2:75236395-75236414 MsG0280010803.01.T01:intron 50.0%
!!! GTTCTGCTTTTTCCGCCCAT+AGG - Chr2:75237119-75237138 MsG0280010803.01.T01:intron 50.0%
!!! TCTGCTTTTTCCGCCCATAG+GGG - Chr2:75237121-75237140 MsG0280010803.01.T01:intron 50.0%
AATCGAACACGTCGATCGCG+AGG + Chr2:75236506-75236525 None:intergenic 55.0%
CAAGGTGAGGATGAGAGCCA+TGG - Chr2:75237319-75237338 MsG0280010803.01.T01:CDS 55.0%
GAACCTTGGCCTAGAAACGC+AGG + Chr2:75237103-75237122 None:intergenic 55.0%
GAGGATGAGAGCCATGGAGT+TGG - Chr2:75237325-75237344 MsG0280010803.01.T01:CDS 55.0%
GCCTTTCGGAACCAACTCCA+TGG + Chr2:75237339-75237358 None:intergenic 55.0%
GGCCACATTGTAAGGGCAAC+AGG - Chr2:75236440-75236459 MsG0280010803.01.T01:intron 55.0%
GGGCGGAAAAAGCAGAACCT+TGG + Chr2:75237117-75237136 None:intergenic 55.0%
! GCCATGGAGTTGGTTCCGAA+AGG - Chr2:75237335-75237354 MsG0280010803.01.T01:CDS 55.0%
!!! CTGCTTTTTCCGCCCATAGG+GGG - Chr2:75237122-75237141 MsG0280010803.01.T01:intron 55.0%
GGACTGAAGGGTCCCCCTAT+GGG + Chr2:75237137-75237156 None:intergenic 60.0%
TCCAATTGCCGATGCCTCGG+TGG - Chr2:75237192-75237211 MsG0280010803.01.T01:CDS 60.0%
TGGACTGAAGGGTCCCCCTA+TGG + Chr2:75237138-75237157 None:intergenic 60.0%
! TCGCCTGCGTTTCTAGGCCA+AGG - Chr2:75237097-75237116 MsG0280010803.01.T01:intron 60.0%
!! TCCACCGAGGCATCGGCAAT+TGG + Chr2:75237196-75237215 None:intergenic 60.0%
CTGAAGGGTCCCCCTATGGG+CGG + Chr2:75237134-75237153 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 75236395 75238115 75236395 ID=MsG0280010803.01;Name=MsG0280010803.01
Chr2 mRNA 75236395 75238115 75236395 ID=MsG0280010803.01.T01;Parent=MsG0280010803.01;Name=MsG0280010803.01.T01;_AED=0.31;_eAED=0.31;_QI=0|0|0|1|1|1|3|0|350
Chr2 exon 75237164 75238115 75237164 ID=MsG0280010803.01.T01:exon:11132;Parent=MsG0280010803.01.T01
Chr2 exon 75236613 75236708 75236613 ID=MsG0280010803.01.T01:exon:11131;Parent=MsG0280010803.01.T01
Chr2 exon 75236395 75236399 75236395 ID=MsG0280010803.01.T01:exon:11130;Parent=MsG0280010803.01.T01
Chr2 CDS 75237164 75238115 75237164 ID=MsG0280010803.01.T01:cds;Parent=MsG0280010803.01.T01
Chr2 CDS 75236613 75236708 75236613 ID=MsG0280010803.01.T01:cds;Parent=MsG0280010803.01.T01
Chr2 CDS 75236395 75236399 75236395 ID=MsG0280010803.01.T01:cds;Parent=MsG0280010803.01.T01
Gene Sequence

>MsG0280010803.01.T01

ATGGGAATGAAGAGCACAGGAGGAGAAATAGTTCAAGTTCAAGGAGGCCACATTGTAAGGGCAACAGGTAGAAAAGACAGACATAGTAAGGTATACACTGCGAAAGGTCCTCGCGATCGACGTGTTCGATTATCAGCACACACAGCAATTCAATTCTATGATGTTCAAGATCGTCTCGGCTACGACAGACCGAGTAAAGCTGTTGATTGGCTAATCAAAAAGGCTAAGTCTGCTATTGACAAACTTGATCAGCTTCCACCATGGAATCCAATTCCAAATGCAACAGAAGAGTTACAAGAGGAAGAGAATAATAATAATAATAATGCAGTAGAAACAAATGAGATGGTTATTGCAGCAGAACAATCAGAATCTTCTGGTTACAATTTGCAGCAGAACAATCATCATAACCATAACCATTCAGGTTTCATTCAATCAACTATTGATAATGATGCTATAGCATTTTTTCCAACAACTTCTGTTGGTGAGTCTATGAATTTTCAAAGCTACTCTTCTGATATAATCTCAAGAACAAACAACTCAACACAGGATCTTGGTCTTTCTCTTCATTCATTCCAAGACAATTCAGCTTCAAATGATCAAACACTTTTCTCTGGATCAAATCCTGTTGGATTTGATGCTAATTATAACAGGATTGTGAATTGGAACACAGCTGATATGAATAGAACCGGGTTTATGGTTAATTCGCCTGCGTTTCTAGGCCAAGGTTCTGCTTTTTCCGCCCATAGGGGGACCCTTCAGTCCAGTTTTTCACCATCACTTCGTCCTTGGAATGATATTCCAATTGCCGATGCCTCGGTGGATCATCATAATCACAAGTCTCAACAACAAATTCCCCAAGCTTCTATCTTTGGTAGCAGGTTTCTGTCTGATGCTTTGACAGGTTTCTGTATTCCTGCTAGAATTCAAGGTGAGGATGAGAGCCATGGAGTTGGGGCATTGTCTACACGCCATGAAGACATTGGAAGATTAAGATGGAAACATTTTGATGATACCCAAAATTTGTCTTGTTGGATTAAACTTTTTTGTGGGTAG

Protein sequence

>MsG0280010803.01.T01

MGMKSTGGEIVQVQGGHIVRATGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKLDQLPPWNPIPNATEELQEEENNNNNNAVETNEMVIAAEQSESSGYNLQQNNHHNHNHSGFIQSTIDNDAIAFFPTTSVGESMNFQSYSSDIISRTNNSTQDLGLSLHSFQDNSASNDQTLFSGSNPVGFDANYNRIVNWNTADMNRTGFMVNSPAFLGQGSAFSAHRGTLQSSFSPSLRPWNDIPIADASVDHHNHKSQQQIPQASIFGSRFLSDALTGFCIPARIQGEDESHGVGALSTRHEDIGRLRWKHFDDTQNLSCWIKLFCG*