AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022002.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022002.01.T01 MTR_4g080350 75.920 299 7 3 1 299 1 234 4.03e-159 447
MsG0480022002.01.T01 MTR_2g083920 59.866 299 53 4 1 299 1 232 5.38e-117 338
MsG0480022002.01.T01 MTR_2g083920 59.866 299 53 4 1 299 1 232 5.99e-116 338
MsG0480022002.01.T01 MTR_2g083920 63.684 190 18 1 110 299 1 139 2.12e-78 239
MsG0480022002.01.T01 MTR_5g004570 35.514 107 56 2 70 176 2 95 2.62e-11 63.2
MsG0480022002.01.T01 MTR_1g029470 36.782 87 43 1 70 156 2 76 2.88e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022002.01.T01 AT2G42750 54.125 303 70 6 1 299 1 238 2.10e-102 303

Find 67 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTATAATTGGTGACTTTAA+TGG 0.191913 4:-66965389 MsG0480022002.01.T01:exon
TGAAGACTATTATGCAGTTT+TGG 0.211869 4:-66965155 MsG0480022002.01.T01:CDS
GGCCCAATGGTCTAAATATT+TGG 0.231307 4:+66964031 None:intergenic
ATAGCCGTTTGAATTAATTC+AGG 0.289083 4:+66963119 None:intergenic
AATGTTGCCTTACATGTTAA+TGG 0.316422 4:-66964063 MsG0480022002.01.T01:CDS
GACATCAATCAATCCTTTCA+TGG 0.320575 4:-66964165 MsG0480022002.01.T01:CDS
GCATCTGGAAGCTGGTAAAA+AGG 0.325161 4:+66964443 None:intergenic
TCATAAACCCTGCGCTGAAT+TGG 0.340208 4:+66964209 None:intergenic
AGTTGCAAACGAAGAGGTTT+TGG 0.340245 4:-66965235 MsG0480022002.01.T01:CDS
GCCAGAGTATACAATCAGTT+TGG 0.347992 4:-66963146 MsG0480022002.01.T01:CDS
TTACATTGACTCTTTCTATA+CGG 0.355741 4:+66962715 None:intergenic
ATCTGCTCCGGTGTTGCATC+TGG 0.358971 4:+66964428 None:intergenic
GTCCAATGAATGCAGTCAAC+AGG 0.364201 4:+66962777 None:intergenic
GGATCGTTGCCACTCAAATC+CGG 0.392784 4:+66964368 None:intergenic
GCCCTGTTGACTGCATTCAT+TGG 0.406145 4:-66962779 MsG0480022002.01.T01:CDS
AGGGTTTATGATGATATTCA+TGG 0.407166 4:-66964197 MsG0480022002.01.T01:CDS
AATGTTGCCTGTGATGTGTT+TGG 0.418176 4:-66963191 MsG0480022002.01.T01:CDS
GGTGCAGAAATTTGTGGTCT+CGG 0.423746 4:+66964346 None:intergenic
AAACCTCTTCGTTTGCAACT+TGG 0.425366 4:+66965238 None:intergenic
TACCAAATATTTAGACCATT+GGG 0.428905 4:-66964033 MsG0480022002.01.T01:CDS
TTTAGAGCTTCTGTGTATAG+TGG 0.435652 4:+66965352 None:intergenic
TTCAAACGGCTATTGAAAGT+TGG 0.439837 4:-66963109 MsG0480022002.01.T01:intron
CCAGAGTATACAATCAGTTT+GGG 0.448971 4:-66963145 MsG0480022002.01.T01:CDS
TTTGGAATTGAAGAAGACTT+TGG 0.450046 4:-66963173 MsG0480022002.01.T01:CDS
ACAAATTCAGTGATGGGTTG+TGG 0.454596 4:+66965326 None:intergenic
GGTAAGAGTTGCTACTGATC+AGG 0.462255 4:-66965209 MsG0480022002.01.T01:CDS
GTACCAAATATTTAGACCAT+TGG 0.462983 4:-66964034 MsG0480022002.01.T01:CDS
CTGAACACCATTAACATGTA+AGG 0.472546 4:+66964056 None:intergenic
AATGAAGGTGCAGAAATTTG+TGG 0.484237 4:+66964340 None:intergenic
CTCATAGACTTCATTAATGA+AGG 0.495012 4:+66964325 None:intergenic
GTGCAGAAATTTGTGGTCTC+GGG 0.497638 4:+66964347 None:intergenic
TAGCCGTTTGAATTAATTCA+GGG 0.500760 4:+66963120 None:intergenic
TTCAGCTCCAACACTGTCAC+TGG 0.500793 4:+66965174 None:intergenic
GATCGTTGCCACTCAAATCC+GGG 0.515416 4:+66964369 None:intergenic
TATGCCTTCTTGATCTGCTC+CGG 0.526633 4:+66964416 None:intergenic
CCAGGCTCAATTCCATCGGG+AGG 0.538682 4:-66964010 MsG0480022002.01.T01:CDS
CTTGGTGTTGCAAATCTCCA+TGG 0.539226 4:+66965256 None:intergenic
TACGACACAAATTCAGTGAT+GGG 0.541733 4:+66965320 None:intergenic
GAACCCTGAATTAATTCAAA+CGG 0.544125 4:-66963123 MsG0480022002.01.T01:CDS
TCGACGAAAACATGATCCTT+CGG 0.546745 4:+66964131 None:intergenic
CTTCATTAATGAAGTCTATG+AGG 0.547350 4:-66964324 MsG0480022002.01.T01:intron
CCGGTGTTGCATCTGGAAGC+TGG 0.547779 4:+66964435 None:intergenic
AATATTTAGACCATTGGGCC+AGG 0.552261 4:-66964028 MsG0480022002.01.T01:CDS
CCTCCCGATGGAATTGAGCC+TGG 0.555551 4:+66964010 None:intergenic
TTCAATTCCAAACACATCAC+AGG 0.555793 4:+66963184 None:intergenic
GGGCCAGGCTCAATTCCATC+GGG 0.557547 4:-66964013 MsG0480022002.01.T01:CDS
TGGGCCAGGCTCAATTCCAT+CGG 0.559350 4:-66964014 MsG0480022002.01.T01:CDS
GTATAGAAAGAGTCAATGTA+AGG 0.560667 4:-66962713 MsG0480022002.01.T01:CDS
CTACGACACAAATTCAGTGA+TGG 0.563171 4:+66965319 None:intergenic
CCCAAACTGATTGTATACTC+TGG 0.564770 4:+66963145 None:intergenic
TGGAATTGAGCCTGGCCCAA+TGG 0.566305 4:+66964018 None:intergenic
CAGTGATCCAATTCAGCGCA+GGG 0.567688 4:-66964216 MsG0480022002.01.T01:CDS
CATGGACGATTCTAGTCCGA+AGG 0.574240 4:-66964147 MsG0480022002.01.T01:CDS
CCAGCTTCCAGATGCAACAC+CGG 0.580606 4:-66964435 MsG0480022002.01.T01:CDS
GTCGATGAATTCAGCTGCAT+AGG 0.581217 4:-66964113 MsG0480022002.01.T01:CDS
TCAGTGATCCAATTCAGCGC+AGG 0.582261 4:-66964217 MsG0480022002.01.T01:CDS
AAACACATCACAGGCAACAT+TGG 0.584006 4:+66963193 None:intergenic
GGACTAGAATCGTCCATGAA+AGG 0.589389 4:+66964152 None:intergenic
ACACCAAGTTGCAAACGAAG+AGG 0.606484 4:-66965241 MsG0480022002.01.T01:CDS
ATTTGTGTCGTAGAAGCTCA+TGG 0.614378 4:-66965309 MsG0480022002.01.T01:CDS
TCCAATGAATGCAGTCAACA+GGG 0.619810 4:+66962778 None:intergenic
TTGTATGAAAACATGCCACC+CGG 0.634799 4:-66964387 MsG0480022002.01.T01:CDS
ATACAACTTAACCCTCCCGA+TGG 0.636032 4:+66963998 None:intergenic
ACATGCCACCCGGATTTGAG+TGG 0.636275 4:-66964377 MsG0480022002.01.T01:CDS
AACACCGGAGCAGATCAAGA+AGG 0.666069 4:-66964420 MsG0480022002.01.T01:CDS
CAGGCTCAATTCCATCGGGA+GGG 0.672069 4:-66964009 MsG0480022002.01.T01:CDS
CGTTGCCACTCAAATCCGGG+TGG 0.724566 4:+66964372 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTTAATTGATATATTTTTA+AGG + Chr4:66963169-66963188 None:intergenic 10.0%
!!! GTTAATTGATATATTTTTAA+GGG + Chr4:66963168-66963187 None:intergenic 10.0%
!!! GTTGTTTTGATTTTTTAAAT+AGG - Chr4:66965067-66965086 MsG0480022002.01.T01:intron 15.0%
!!! TATTACTGATATGTTTTATT+TGG - Chr4:66965118-66965137 MsG0480022002.01.T01:intron 15.0%
!!! TTTTTAGTAAACAATCATTT+TGG - Chr4:66963200-66963219 MsG0480022002.01.T01:CDS 15.0%
!! AAAATTCAAGATATCCAAAA+AGG + Chr4:66963822-66963841 None:intergenic 20.0%
!! AACATATCAGTAATATAGAA+TGG + Chr4:66965113-66965132 None:intergenic 20.0%
!! ATAAAATGGACACATATAAA+AGG - Chr4:66964402-66964421 MsG0480022002.01.T01:CDS 20.0%
!! TATTATGCTTCAAAAATTTG+TGG - Chr4:66963841-66963860 MsG0480022002.01.T01:intron 20.0%
!! TTGAAGTTAAGAAATAATAG+TGG + Chr4:66965164-66965183 None:intergenic 20.0%
!!! AATCTTCTTTTCACTATAAT+TGG - Chr4:66962713-66962732 MsG0480022002.01.T01:CDS 20.0%
!!! TAGTTAAACACTTAGTTTTT+AGG - Chr4:66965223-66965242 MsG0480022002.01.T01:CDS 20.0%
!!! TATCCAAAAAAGTTTGATTT+AGG - Chr4:66964136-66964155 MsG0480022002.01.T01:CDS 20.0%
!!! TGTGTTTTTATAGAATTTCA+AGG - Chr4:66963072-66963091 MsG0480022002.01.T01:intron 20.0%
!!! TTTTCTAACTTTTCTATTTC+AGG - Chr4:66963871-66963890 MsG0480022002.01.T01:intron 20.0%
! AAGACAATTGAATCAAAATG+TGG + Chr4:66964607-66964626 None:intergenic 25.0%
! ATATCAGTAATATAGAATGG+TGG + Chr4:66965110-66965129 None:intergenic 25.0%
! ATTAGCATCTAATCTAACAA+AGG + Chr4:66964824-66964843 None:intergenic 25.0%
! ATTCTTCAATATCTTTGAAC+AGG - Chr4:66964884-66964903 MsG0480022002.01.T01:intron 25.0%
! GACACAATTCTTAAAATACT+AGG - Chr4:66964451-66964470 MsG0480022002.01.T01:CDS 25.0%
! TACCAAATATTTAGACCATT+GGG - Chr4:66964081-66964100 MsG0480022002.01.T01:CDS 25.0%
! TATTTACAAAAGAGACACTT+GGG - Chr4:66963376-66963395 MsG0480022002.01.T01:intron 25.0%
! TTATTTACAAAAGAGACACT+TGG - Chr4:66963375-66963394 MsG0480022002.01.T01:intron 25.0%
!! AAAATATGAAGGAACCATTT+TGG + Chr4:66963105-66963124 None:intergenic 25.0%
!! AAATATGAAGGAACCATTTT+GGG + Chr4:66963104-66963123 None:intergenic 25.0%
!! AATGTGTCTTTTAGTCAATT+TGG - Chr4:66963343-66963362 MsG0480022002.01.T01:intron 25.0%
!! ACTATAATTGGTGACTTTAA+TGG - Chr4:66962725-66962744 MsG0480022002.01.T01:CDS 25.0%
!! TTTTGTGTGCTTAATTGATA+TGG - Chr4:66964763-66964782 MsG0480022002.01.T01:intron 25.0%
!!! AAGTTTGAAAGCTACTTTTT+TGG + Chr4:66963463-66963482 None:intergenic 25.0%
!!! ATCTATTTAGAGTTTTTGCA+AGG - Chr4:66964847-66964866 MsG0480022002.01.T01:intron 25.0%
!!! TGAGTAATTTTTCAGAGAAT+AGG - Chr4:66963551-66963570 MsG0480022002.01.T01:intron 25.0%
!!! TTACATTGACTCTTTCTATA+CGG + Chr4:66965402-66965421 None:intergenic 25.0%
AAGGTCCAAACTCTATAAAA+TGG - Chr4:66964388-66964407 MsG0480022002.01.T01:CDS 30.0%
AATGTTGCCTTACATGTTAA+TGG - Chr4:66964051-66964070 MsG0480022002.01.T01:CDS 30.0%
ACAGACGTAAAATAAGAGTT+TGG + Chr4:66963003-66963022 None:intergenic 30.0%
ACTCATGATTAGCAATGATT+AGG + Chr4:66964315-66964334 None:intergenic 30.0%
AGGGTTTATGATGATATTCA+TGG - Chr4:66963917-66963936 MsG0480022002.01.T01:intron 30.0%
ATAGCCGTTTGAATTAATTC+AGG + Chr4:66964998-66965017 None:intergenic 30.0%
ATATGCAGTTATGCTTCATT+TGG - Chr4:66965198-66965217 MsG0480022002.01.T01:CDS 30.0%
CTCATAGACTTCATTAATGA+AGG + Chr4:66963792-66963811 None:intergenic 30.0%
CTTCATTAATGAAGTCTATG+AGG - Chr4:66963790-66963809 MsG0480022002.01.T01:intron 30.0%
GAACCCTGAATTAATTCAAA+CGG - Chr4:66964991-66965010 MsG0480022002.01.T01:intron 30.0%
GTACCAAATATTTAGACCAT+TGG - Chr4:66964080-66964099 MsG0480022002.01.T01:CDS 30.0%
GTATAGAAAGAGTCAATGTA+AGG - Chr4:66965401-66965420 MsG0480022002.01.T01:five_prime_UTR 30.0%
GTCAGTGTTTATTATCTCTT+CGG + Chr4:66964729-66964748 None:intergenic 30.0%
TAATCTAACAAAGGTGATGA+AGG + Chr4:66964815-66964834 None:intergenic 30.0%
TAGCCGTTTGAATTAATTCA+GGG + Chr4:66964997-66965016 None:intergenic 30.0%
TAGTTTAAGGAGTTGAACAA+GGG - Chr4:66963423-66963442 MsG0480022002.01.T01:intron 30.0%
TGTTAGGGTAAATTACCAAA+GGG + Chr4:66964643-66964662 None:intergenic 30.0%
TTACCAAAGGGGTTAAATTA+AGG + Chr4:66964631-66964650 None:intergenic 30.0%
TTAGTTTAAGGAGTTGAACA+AGG - Chr4:66963422-66963441 MsG0480022002.01.T01:intron 30.0%
TTCAAGGATATTACCCAAAA+TGG - Chr4:66963088-66963107 MsG0480022002.01.T01:intron 30.0%
TTGTTAGGGTAAATTACCAA+AGG + Chr4:66964644-66964663 None:intergenic 30.0%
TTTCCTTAATTTAACCCCTT+TGG - Chr4:66964625-66964644 MsG0480022002.01.T01:intron 30.0%
! AATGGTTCCTTCATATTTTC+TGG - Chr4:66963106-66963125 MsG0480022002.01.T01:intron 30.0%
! ATGGTTCCTTCATATTTTCT+GGG - Chr4:66963107-66963126 MsG0480022002.01.T01:intron 30.0%
! GAAGACTATTATGCAGTTTT+GGG - Chr4:66962960-66962979 MsG0480022002.01.T01:intron 30.0%
! TCGGAAATGCTTTTCAATAA+AGG + Chr4:66964680-66964699 None:intergenic 30.0%
! TGAAGACTATTATGCAGTTT+TGG - Chr4:66962959-66962978 MsG0480022002.01.T01:intron 30.0%
! TGTGTCCATTTTATAGAGTT+TGG + Chr4:66964396-66964415 None:intergenic 30.0%
! TTTGGAATTGAAGAAGACTT+TGG - Chr4:66964941-66964960 MsG0480022002.01.T01:intron 30.0%
!! AAGTTGGTATGTTTATGACT+AGG - Chr4:66965021-66965040 MsG0480022002.01.T01:intron 30.0%
!!! ATTCGACGAGTTTTAGTTTA+AGG - Chr4:66963410-66963429 MsG0480022002.01.T01:intron 30.0%
!!! CAATGTTATTTTCATGCTGA+AGG + Chr4:66965250-66965269 None:intergenic 30.0%
!!! CGTCCTAAATCAAACTTTTT+TGG + Chr4:66964142-66964161 None:intergenic 30.0%
AAAAAACTGCAACTAGTCCA+TGG - Chr4:66962841-66962860 MsG0480022002.01.T01:intron 35.0%
AATCATGAGTGAATATCCTG+TGG - Chr4:66964325-66964344 MsG0480022002.01.T01:CDS 35.0%
ACATGTGTATATGTTAGGAG+AGG - Chr4:66963138-66963157 MsG0480022002.01.T01:CDS 35.0%
ACTAGGTTATCCTCCAATTA+AGG - Chr4:66964468-66964487 MsG0480022002.01.T01:CDS 35.0%
AGAGTGACTGTCCATAATTA+TGG - Chr4:66964233-66964252 MsG0480022002.01.T01:intron 35.0%
AGTTGAACAAGGGAATATCT+TGG - Chr4:66963433-66963452 MsG0480022002.01.T01:intron 35.0%
ATCATGAGTGAATATCCTGT+GGG - Chr4:66964326-66964345 MsG0480022002.01.T01:CDS 35.0%
CACGAACAAAAGACACATTT+AGG + Chr4:66963291-66963310 None:intergenic 35.0%
CATAACTACTATACTGGACA+GGG - Chr4:66964190-66964209 MsG0480022002.01.T01:CDS 35.0%
CATTAATGAAGTCTATGAGG+TGG - Chr4:66963793-66963812 MsG0480022002.01.T01:intron 35.0%
CCAGAGTATACAATCAGTTT+GGG - Chr4:66964969-66964988 MsG0480022002.01.T01:intron 35.0%
CTAGGTTATCCTCCAATTAA+GGG - Chr4:66964469-66964488 MsG0480022002.01.T01:CDS 35.0%
CTGAACACCATTAACATGTA+AGG + Chr4:66964061-66964080 None:intergenic 35.0%
CTGTCCAGTATAGTAGTTAT+GGG + Chr4:66964191-66964210 None:intergenic 35.0%
GACATCAATCAATCCTTTCA+TGG - Chr4:66963949-66963968 MsG0480022002.01.T01:intron 35.0%
GAGGACTAAACTAACTAACA+AGG + Chr4:66963322-66963341 None:intergenic 35.0%
GAGTGACTGTCCATAATTAT+GGG - Chr4:66964234-66964253 MsG0480022002.01.T01:intron 35.0%
GGACACATATAAAAGGCTAA+AGG - Chr4:66964409-66964428 MsG0480022002.01.T01:CDS 35.0%
GGGATACATGTGTATATGTT+AGG - Chr4:66963133-66963152 MsG0480022002.01.T01:CDS 35.0%
GTTAGGGTAAATTACCAAAG+GGG + Chr4:66964642-66964661 None:intergenic 35.0%
TACGACACAAATTCAGTGAT+GGG + Chr4:66962797-66962816 None:intergenic 35.0%
TGATTAGCAATGATTAGGTG+AGG + Chr4:66964310-66964329 None:intergenic 35.0%
TGTCCAGTATAGTAGTTATG+GGG + Chr4:66964190-66964209 None:intergenic 35.0%
TTCAAACGGCTATTGAAAGT+TGG - Chr4:66965005-66965024 MsG0480022002.01.T01:intron 35.0%
TTCAATTCCAAACACATCAC+AGG + Chr4:66964933-66964952 None:intergenic 35.0%
TTGACTAAAAGACACATTCG+AGG + Chr4:66963341-66963360 None:intergenic 35.0%
TTGTGAAGCAACTAAGCTAA+CGG - Chr4:66965271-66965290 MsG0480022002.01.T01:CDS 35.0%
! AATGAAGGTGCAGAAATTTG+TGG + Chr4:66963777-66963796 None:intergenic 35.0%
! TGAGTGATTTTCTGAACTGT+GGG - Chr4:66963502-66963521 MsG0480022002.01.T01:intron 35.0%
! TTGAGTGATTTTCTGAACTG+TGG - Chr4:66963501-66963520 MsG0480022002.01.T01:intron 35.0%
! TTTAGAGCTTCTGTGTATAG+TGG + Chr4:66962765-66962784 None:intergenic 35.0%
!! GAAGTGTTGTCAGATTGTTA+GGG + Chr4:66964658-66964677 None:intergenic 35.0%
AAACACATCACAGGCAACAT+TGG + Chr4:66964924-66964943 None:intergenic 40.0%
AAACCTCTTCGTTTGCAACT+TGG + Chr4:66962879-66962898 None:intergenic 40.0%
AAGGAGCAAGCCCATAATTA+TGG + Chr4:66964247-66964266 None:intergenic 40.0%
AAGGTGATGAAGGACTATCT+AGG + Chr4:66964805-66964824 None:intergenic 40.0%
AATATTTAGACCATTGGGCC+AGG - Chr4:66964086-66964105 MsG0480022002.01.T01:CDS 40.0%
AATGATTAGGTGAGGTACGA+AGG + Chr4:66964302-66964321 None:intergenic 40.0%
AATGTTGCCTGTGATGTGTT+TGG - Chr4:66964923-66964942 MsG0480022002.01.T01:intron 40.0%
AGTATAGTAGTTATGGGGGA+TGG + Chr4:66964185-66964204 None:intergenic 40.0%
ATCCCCCATAACTACTATAC+TGG - Chr4:66964184-66964203 MsG0480022002.01.T01:CDS 40.0%
ATGATTAGGTGAGGTACGAA+GGG + Chr4:66964301-66964320 None:intergenic 40.0%
ATTTGTGTCGTAGAAGCTCA+TGG - Chr4:66962805-66962824 MsG0480022002.01.T01:intron 40.0%
CCATAACTACTATACTGGAC+AGG - Chr4:66964189-66964208 MsG0480022002.01.T01:CDS 40.0%
CCCAAACTGATTGTATACTC+TGG + Chr4:66964972-66964991 None:intergenic 40.0%
CCTGTCCAGTATAGTAGTTA+TGG + Chr4:66964192-66964211 None:intergenic 40.0%
CTACGACACAAATTCAGTGA+TGG + Chr4:66962798-66962817 None:intergenic 40.0%
GAAAACACAAGTCTAGGTCA+CGG + Chr4:66964517-66964536 None:intergenic 40.0%
GCCAGAGTATACAATCAGTT+TGG - Chr4:66964968-66964987 MsG0480022002.01.T01:intron 40.0%
GGCCCAATGGTCTAAATATT+TGG + Chr4:66964086-66964105 None:intergenic 40.0%
GTCCAGTATAGTAGTTATGG+GGG + Chr4:66964189-66964208 None:intergenic 40.0%
TATGGACAGTCACTCTTACT+TGG + Chr4:66964229-66964248 None:intergenic 40.0%
TCATGAGTGAATATCCTGTG+GGG - Chr4:66964327-66964346 MsG0480022002.01.T01:CDS 40.0%
TCCAATGAATGCAGTCAACA+GGG + Chr4:66965339-66965358 None:intergenic 40.0%
TCCAGCTAATATATCGTCTG+CGG + Chr4:66963581-66963600 None:intergenic 40.0%
TCGACGAAAACATGATCCTT+CGG + Chr4:66963986-66964005 None:intergenic 40.0%
TCGTCTGAAAACACAAGTCT+AGG + Chr4:66964523-66964542 None:intergenic 40.0%
TTGTATGAAAACATGCCACC+CGG - Chr4:66963727-66963746 MsG0480022002.01.T01:intron 40.0%
! AAAGCATTTCCGATTCGATG+AGG - Chr4:66964687-66964706 MsG0480022002.01.T01:intron 40.0%
! AGTTGCAAACGAAGAGGTTT+TGG - Chr4:66962879-66962898 MsG0480022002.01.T01:intron 40.0%
! CTATGAGGTGGTTTCCTTTT+TGG - Chr4:66963805-66963824 MsG0480022002.01.T01:intron 40.0%
! TTTTCAACCAGTGACAGTGT+TGG - Chr4:66962933-66962952 MsG0480022002.01.T01:intron 40.0%
!! ACAAATTCAGTGATGGGTTG+TGG + Chr4:66962791-66962810 None:intergenic 40.0%
!! CAAACGAAGAGGTTTTGGTA+GGG - Chr4:66962884-66962903 MsG0480022002.01.T01:intron 40.0%
!! GGAAGTGTTGTCAGATTGTT+AGG + Chr4:66964659-66964678 None:intergenic 40.0%
!!! CCTTCATATTTTCTGGGACT+GGG - Chr4:66963113-66963132 MsG0480022002.01.T01:CDS 40.0%
!!! CTATTATGCAGTTTTGGGTC+TGG - Chr4:66962965-66962984 MsG0480022002.01.T01:intron 40.0%
!!! TCCTTCATATTTTCTGGGAC+TGG - Chr4:66963112-66963131 MsG0480022002.01.T01:CDS 40.0%
ACACCAAGTTGCAAACGAAG+AGG - Chr4:66962873-66962892 MsG0480022002.01.T01:intron 45.0%
ACCGCAGACGATATATTAGC+TGG - Chr4:66963577-66963596 MsG0480022002.01.T01:intron 45.0%
ACTATACTGGACAGGGAGAT+GGG - Chr4:66964197-66964216 MsG0480022002.01.T01:CDS 45.0%
AGGTGAGTGACACCCTTAAT+TGG + Chr4:66964484-66964503 None:intergenic 45.0%
ATACAACTTAACCCTCCCGA+TGG + Chr4:66964119-66964138 None:intergenic 45.0%
ATGTGAGAGTGAGACGTTGT+CGG - Chr4:66963232-66963251 MsG0480022002.01.T01:intron 45.0%
CCCAGTCCCAGAAAATATGA+AGG + Chr4:66963116-66963135 None:intergenic 45.0%
GACGACTGAGTAAAGCATGT+AGG - Chr4:66964158-66964177 MsG0480022002.01.T01:CDS 45.0%
GCATCTGGAAGCTGGTAAAA+AGG + Chr4:66963674-66963693 None:intergenic 45.0%
GGACTAGAATCGTCCATGAA+AGG + Chr4:66963965-66963984 None:intergenic 45.0%
GGTAAGAGTTGCTACTGATC+AGG - Chr4:66962905-66962924 MsG0480022002.01.T01:intron 45.0%
GGTGCAGAAATTTGTGGTCT+CGG + Chr4:66963771-66963790 None:intergenic 45.0%
GTCCAATGAATGCAGTCAAC+AGG + Chr4:66965340-66965359 None:intergenic 45.0%
GTCGATGAATTCAGCTGCAT+AGG - Chr4:66964001-66964020 MsG0480022002.01.T01:CDS 45.0%
GTGCAGAAATTTGTGGTCTC+GGG + Chr4:66963770-66963789 None:intergenic 45.0%
TACTATACTGGACAGGGAGA+TGG - Chr4:66964196-66964215 MsG0480022002.01.T01:CDS 45.0%
TAGGTCACGGTTTCTGTTCA+AGG + Chr4:66964504-66964523 None:intergenic 45.0%
TATGCCTTCTTGATCTGCTC+CGG + Chr4:66963701-66963720 None:intergenic 45.0%
TCATAAACCCTGCGCTGAAT+TGG + Chr4:66963908-66963927 None:intergenic 45.0%
TGAGTGACACCCTTAATTGG+AGG + Chr4:66964481-66964500 None:intergenic 45.0%
! TGACTGACTCCTCATCGAAT+CGG + Chr4:66964699-66964718 None:intergenic 45.0%
! TTGGACCTTTTCCTTTCGTC+AGG + Chr4:66964377-66964396 None:intergenic 45.0%
!! CTTGGTGTTGCAAATCTCCA+TGG + Chr4:66962861-66962880 None:intergenic 45.0%
!! GCAAACGAAGAGGTTTTGGT+AGG - Chr4:66962883-66962902 MsG0480022002.01.T01:intron 45.0%
AACACCGGAGCAGATCAAGA+AGG - Chr4:66963694-66963713 MsG0480022002.01.T01:intron 50.0%
ACCAAGTACCCAAATCAGGG+TGG - Chr4:66964350-66964369 MsG0480022002.01.T01:CDS 50.0%
ATGCCATGTGTGGAACTGGA+AGG + Chr4:66964266-66964285 None:intergenic 50.0%
CAGTGATCCAATTCAGCGCA+GGG - Chr4:66963898-66963917 MsG0480022002.01.T01:intron 50.0%
CATGGACGATTCTAGTCCGA+AGG - Chr4:66963967-66963986 MsG0480022002.01.T01:CDS 50.0%
CCAAGTACCCAAATCAGGGT+GGG - Chr4:66964351-66964370 MsG0480022002.01.T01:CDS 50.0%
CTATACTGGACAGGGAGATG+GGG - Chr4:66964198-66964217 MsG0480022002.01.T01:CDS 50.0%
GATCGTTGCCACTCAAATCC+GGG + Chr4:66963748-66963767 None:intergenic 50.0%
GGATCGTTGCCACTCAAATC+CGG + Chr4:66963749-66963768 None:intergenic 50.0%
GGGACCAAGTACCCAAATCA+GGG - Chr4:66964347-66964366 MsG0480022002.01.T01:CDS 50.0%
TCAGTGATCCAATTCAGCGC+AGG - Chr4:66963897-66963916 MsG0480022002.01.T01:intron 50.0%
TGTCATGCCATGTGTGGAAC+TGG + Chr4:66964270-66964289 None:intergenic 50.0%
TTCAGCTCCAACACTGTCAC+TGG + Chr4:66962943-66962962 None:intergenic 50.0%
! GCCCTGTTGACTGCATTCAT+TGG - Chr4:66965335-66965354 MsG0480022002.01.T01:CDS 50.0%
ACATGCCACCCGGATTTGAG+TGG - Chr4:66963737-66963756 MsG0480022002.01.T01:intron 55.0%
CAGGCTCAATTCCATCGGGA+GGG - Chr4:66964105-66964124 MsG0480022002.01.T01:CDS 55.0%
CCAGCTTCCAGATGCAACAC+CGG - Chr4:66963679-66963698 MsG0480022002.01.T01:intron 55.0%
GATGCGTGTCATGCCATGTG+TGG + Chr4:66964276-66964295 None:intergenic 55.0%
GCTCCTTCCAGTTCCACACA+TGG - Chr4:66964260-66964279 MsG0480022002.01.T01:intron 55.0%
GGGGACCAAGTACCCAAATC+AGG - Chr4:66964346-66964365 MsG0480022002.01.T01:CDS 55.0%
GTGGGCCTGACGAAAGGAAA+AGG - Chr4:66964369-66964388 MsG0480022002.01.T01:CDS 55.0%
TGGAATTGAGCCTGGCCCAA+TGG + Chr4:66964099-66964118 None:intergenic 55.0%
TGGGCCAGGCTCAATTCCAT+CGG - Chr4:66964100-66964119 MsG0480022002.01.T01:CDS 55.0%
TTTGGGTACTTGGTCCCCAC+AGG + Chr4:66964344-66964363 None:intergenic 55.0%
!! ATCTGCTCCGGTGTTGCATC+TGG + Chr4:66963689-66963708 None:intergenic 55.0%
!! CCCACCCTGATTTGGGTACT+TGG + Chr4:66964354-66964373 None:intergenic 55.0%
ATCAGGGTGGGCCTGACGAA+AGG - Chr4:66964363-66964382 MsG0480022002.01.T01:CDS 60.0%
CCAGGCTCAATTCCATCGGG+AGG - Chr4:66964104-66964123 MsG0480022002.01.T01:CDS 60.0%
CCTCCCGATGGAATTGAGCC+TGG + Chr4:66964107-66964126 None:intergenic 60.0%
CGTCAGGCCCACCCTGATTT+GGG + Chr4:66964361-66964380 None:intergenic 60.0%
CGTTGCCACTCAAATCCGGG+TGG + Chr4:66963745-66963764 None:intergenic 60.0%
GGGCCAGGCTCAATTCCATC+GGG - Chr4:66964101-66964120 MsG0480022002.01.T01:CDS 60.0%
TCGTCAGGCCCACCCTGATT+TGG + Chr4:66964362-66964381 None:intergenic 60.0%
!! CCGGTGTTGCATCTGGAAGC+TGG + Chr4:66963682-66963701 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 66962701 66965435 66962701 ID=MsG0480022002.01;Name=MsG0480022002.01
Chr4 mRNA 66962701 66965435 66962701 ID=MsG0480022002.01.T01;Parent=MsG0480022002.01;Name=MsG0480022002.01.T01;_AED=0.49;_eAED=0.58;_QI=43|0.5|0.4|1|0.75|0.6|5|0|303
Chr4 exon 66962701 66962800 66962701 ID=MsG0480022002.01.T01:exon:7444;Parent=MsG0480022002.01.T01
Chr4 exon 66963110 66963230 66963110 ID=MsG0480022002.01.T01:exon:7443;Parent=MsG0480022002.01.T01
Chr4 exon 66963961 66964243 66963961 ID=MsG0480022002.01.T01:exon:7442;Parent=MsG0480022002.01.T01
Chr4 exon 66964325 66964489 66964325 ID=MsG0480022002.01.T01:exon:7441;Parent=MsG0480022002.01.T01
Chr4 exon 66965150 66965435 66965150 ID=MsG0480022002.01.T01:exon:7440;Parent=MsG0480022002.01.T01
Chr4 five_prime_UTR 66965393 66965435 66965393 ID=MsG0480022002.01.T01:five_prime_utr;Parent=MsG0480022002.01.T01
Chr4 CDS 66965150 66965392 66965150 ID=MsG0480022002.01.T01:cds;Parent=MsG0480022002.01.T01
Chr4 CDS 66964325 66964489 66964325 ID=MsG0480022002.01.T01:cds;Parent=MsG0480022002.01.T01
Chr4 CDS 66963961 66964243 66963961 ID=MsG0480022002.01.T01:cds;Parent=MsG0480022002.01.T01
Chr4 CDS 66963110 66963230 66963110 ID=MsG0480022002.01.T01:cds;Parent=MsG0480022002.01.T01
Chr4 CDS 66962701 66962800 66962701 ID=MsG0480022002.01.T01:cds;Parent=MsG0480022002.01.T01
Gene Sequence

>MsG0480022002.01.T01

ATGGCTCAATTATTGTCACCACTATACACAGAAGCTCTAAAAATCCACAACCCATCACTGAATTTGTGTCGTAGAAGCTCATGGCAGATGCTACAACAAAAAACTGCAACTAGTCCATGGAGATTTGCAACACCAAGTTGCAAACGAAGAGGTTTTGGTAGGGTAAGAGTTGCTACTGATCAGGAATCATTTTCAACCAGTGACAGTGTTGGAGCTGAAGACTATTATGCAGTTTTGGGTCTGATGTTTAATGATTGTGAAATTGATCCTTTTTACCAGCTTCCAGATGCAACACCGGAGCAGATCAAGAAGGCATACTACAATTGTATGAAAACATGCCACCCGGATTTGAGTGGCAACGATCCCGAGACCACAAATTTCTGCACCTTCATTAATGAAGTCTATGAGGTGCTCAGTGATCCAATTCAGCGCAGGGTTTATGATGATATTCATGGCTATTCTTTGACATCAATCAATCCTTTCATGGACGATTCTAGTCCGAAGGATCATGTTTTCGTCGATGAATTCAGCTGCATAGGTACTTTCAATTTTCAAATCACTCTTACAATGTTGCCTTACATGTTAATGGTGTTCAGTACCAAATATTTAGACCATTGGGCCAGGCTCAATTCCATCGGGAGGGTTAAGTTGTATCCAAAAAAGTTTGATTTAGGACGACTGAGTAAAGCATGCTGCAAAAACTGTGCCAATGTTGCCTGTGATGTGTTTGGAATTGAAGAAGACTTTGGAAGAGCCAGAGTATACAATCAGTTTGGGAACCCTGAATTAATTCAAACGGCTATTGAAAGTTGCCCTGTTGACTGCATTCATTGGACATCAGCTGCACAACTATCATTACTTGAAGACGAAATGCGCCGTATAGAAAGAGTCAATGTAAGGCCAAAGTCATAA

Protein sequence

>MsG0480022002.01.T01

MAQLLSPLYTEALKIHNPSLNLCRRSSWQMLQQKTATSPWRFATPSCKRRGFGRVRVATDQESFSTSDSVGAEDYYAVLGLMFNDCEIDPFYQLPDATPEQIKKAYYNCMKTCHPDLSGNDPETTNFCTFINEVYEVLSDPIQRRVYDDIHGYSLTSINPFMDDSSPKDHVFVDEFSCIGTFNFQITLTMLPYMLMVFSTKYLDHWARLNSIGRVKLYPKKFDLGRLSKACCKNCANVACDVFGIEEDFGRARVYNQFGNPELIQTAIESCPVDCIHWTSAAQLSLLEDEMRRIERVNVRPKS*