AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580026362.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580026362.01.T01 MTR_5g056200 94.529 329 11 1 1 329 1 322 0.0 642
MsG0580026362.01.T01 MTR_1g076920 32.059 340 195 12 13 329 46 372 1.57e-46 163
MsG0580026362.01.T01 MTR_8g077185 32.056 287 156 8 59 329 84 347 6.66e-40 145
MsG0580026362.01.T01 MTR_4g036495 29.655 290 170 9 49 329 394 658 5.80e-26 110
MsG0580026362.01.T01 MTR_3g034670 24.172 302 185 9 65 329 138 432 1.77e-17 84.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580026362.01.T01 AT5G19850 71.010 307 78 3 23 329 46 341 4.86e-166 469
MsG0580026362.01.T01 AT4G36530 30.796 289 161 8 57 329 25 290 1.41e-39 143
MsG0580026362.01.T01 AT5G38520 31.561 301 176 10 46 329 54 341 1.51e-39 144
MsG0580026362.01.T01 AT4G36530 30.721 319 175 10 30 329 56 347 1.55e-39 144
MsG0580026362.01.T01 AT5G38520 30.990 313 174 11 46 329 54 353 9.38e-38 140
MsG0580026362.01.T01 AT4G25290 32.453 265 144 10 45 299 383 622 3.65e-23 101
MsG0580026362.01.T01 AT5G13800 25.243 309 183 9 60 329 97 396 8.13e-21 93.6
MsG0580026362.01.T01 AT5G13800 25.430 291 173 7 74 329 115 396 1.43e-20 93.6
MsG0580026362.01.T01 AT5G13800 25.430 291 173 7 74 329 115 396 1.43e-20 93.6
MsG0580026362.01.T01 AT5G13800 25.430 291 173 7 74 329 138 419 1.72e-20 93.2
MsG0580026362.01.T01 AT1G80280 24.752 303 182 12 53 329 342 624 1.11e-12 69.7

Find 84 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTATACTCTATTGATCTTAT+TGG 0.166414 5:-35381948 MsG0580026362.01.T01:CDS
TCTATTGATCTTATTGGATA+TGG 0.205615 5:-35381942 MsG0580026362.01.T01:CDS
AATATTCGCTATCAATATTC+TGG 0.257699 5:-35383050 MsG0580026362.01.T01:CDS
CCATGTATCAAACGTGTAAA+AGG 0.281790 5:+35381878 None:intergenic
AATAGGAAGTAAGGATGTTA+AGG 0.294156 5:-35380154 MsG0580026362.01.T01:CDS
TTCTTTATATGCAATTCTAT+TGG 0.304916 5:-35381807 MsG0580026362.01.T01:CDS
TGCAGGAGTTGTAGGTCTTC+AGG 0.314699 5:-35381669 MsG0580026362.01.T01:intron
ATCTGTACCTAAGCAATCTT+TGG 0.314812 5:+35381534 None:intergenic
CAACGGTCCTGCATTAGTTT+TGG 0.317095 5:-35383024 MsG0580026362.01.T01:CDS
TCTCCAATTTGACGAGGATT+TGG 0.317385 5:+35381906 None:intergenic
AAACCAAATCCTCGTCAAAT+TGG 0.328365 5:-35381909 MsG0580026362.01.T01:CDS
TTGTTGATGAGAACGAATTT+TGG 0.337395 5:+35383284 None:intergenic
TAATTTCTTCCCATCTCAAT+TGG 0.373655 5:+35380345 None:intergenic
TGAGGGCAATGGCCAACATT+TGG 0.415552 5:+35380285 None:intergenic
TGCACGGTTTCGGAGCTAAC+AGG 0.420465 5:-35383001 MsG0580026362.01.T01:CDS
TTACTCAGGAGGCCCTCTTC+CGG 0.423885 5:-35380528 MsG0580026362.01.T01:CDS
AAGGGGATAGTGTTCGAGGA+TGG 0.426410 5:+35383310 None:intergenic
TTCATTGTTCTTCCAAATGT+TGG 0.429029 5:-35380297 MsG0580026362.01.T01:CDS
CTTGAGTTTATTTGTTACTC+AGG 0.435166 5:-35380542 MsG0580026362.01.T01:CDS
CTTAGTCCAGGGCTGGAACC+TGG 0.439933 5:-35380581 MsG0580026362.01.T01:CDS
AGAATTCCCTTGCAGATTTG+TGG 0.439987 5:+35381632 None:intergenic
ATTGAGATGGGAAGAAATTA+CGG 0.440012 5:-35380342 MsG0580026362.01.T01:CDS
TTTATATGCAATTCTATTGG+AGG 0.447257 5:-35381804 MsG0580026362.01.T01:intron
CACTAGCTCATCGGTCACTT+TGG 0.454248 5:+35380613 None:intergenic
GTTCATTCCAAAGATTGCTT+AGG 0.456751 5:-35381541 MsG0580026362.01.T01:intron
GTGCAGCTCATCCTTAGTCC+AGG 0.460929 5:-35380593 MsG0580026362.01.T01:CDS
TGTTATAGGGATACTTCTGT+TGG 0.462681 5:-35381435 MsG0580026362.01.T01:intron
CATGGGGTGACAAGGATCCT+TGG 0.467501 5:-35380371 MsG0580026362.01.T01:CDS
CACTTCATTGCAGTGATCAC+TGG 0.468988 5:-35382007 MsG0580026362.01.T01:CDS
GGTAGCAGTTCCTCCGGAAG+AGG 0.470234 5:+35380515 None:intergenic
AAATGTTGGCCATTGCCCTC+AGG 0.470508 5:-35380283 MsG0580026362.01.T01:CDS
TCACCCCATGCTATCAAAAC+CGG 0.475442 5:+35380384 None:intergenic
ATATTCGCTATCAATATTCT+GGG 0.476186 5:-35383049 MsG0580026362.01.T01:CDS
CAGGTTCCAGCCCTGGACTA+AGG 0.476545 5:+35380582 None:intergenic
GTACTTGTAGCATGTGGAAT+TGG 0.478100 5:-35383082 MsG0580026362.01.T01:intron
AGGGGATAGTGTTCGAGGAT+GGG 0.479459 5:+35383311 None:intergenic
GGAGGAAACTTACCTTTACT+CGG 0.485365 5:+35380492 None:intergenic
ATGGGGTGACAAGGATCCTT+GGG 0.486295 5:-35380370 MsG0580026362.01.T01:CDS
AGTAAGGATGTTAAGGGAGC+AGG 0.487422 5:-35380147 MsG0580026362.01.T01:CDS
TCACACGTATATGTAGCAAT+AGG 0.489074 5:-35380171 MsG0580026362.01.T01:CDS
CCCATCTCAATTGGTTCCCA+AGG 0.492479 5:+35380354 None:intergenic
CTGGCATAAAATGTTCTTCA+CGG 0.494720 5:+35381377 None:intergenic
ATATGTAGCAATAGGAAGTA+AGG 0.503868 5:-35380163 MsG0580026362.01.T01:CDS
GAGTAAGGGGATAGTGTTCG+AGG 0.506672 5:+35383306 None:intergenic
TTCATATAAAGAAGCAGCCT+TGG 0.511606 5:-35381583 MsG0580026362.01.T01:CDS
ATAGGAAGTAAGGATGTTAA+GGG 0.512152 5:-35380153 MsG0580026362.01.T01:CDS
ACAGCACCAGGTTCCAGCCC+TGG 0.513560 5:+35380575 None:intergenic
GCTCATCCTTAGTCCAGGGC+TGG 0.515765 5:-35380588 MsG0580026362.01.T01:CDS
TCCTTGGGAACCAATTGAGA+TGG 0.531636 5:-35380355 MsG0580026362.01.T01:CDS
GAGTTTATTTGTTACTCAGG+AGG 0.533102 5:-35380539 MsG0580026362.01.T01:CDS
GGAGAGAGTGAGAGTTGTGG+TGG 0.536782 5:+35383332 None:intergenic
TTGTAGCATGTGGAATTGGA+AGG 0.541812 5:-35383078 MsG0580026362.01.T01:intron
GTAGCAGTTCCTCCGGAAGA+GGG 0.543767 5:+35380516 None:intergenic
CTTTGGAATGAACTGATGAA+AGG 0.547460 5:+35381551 None:intergenic
TACGCAAAGATATATTAAGA+AGG 0.556446 5:+35381609 None:intergenic
TGCAGCTCATCCTTAGTCCA+GGG 0.557489 5:-35380592 MsG0580026362.01.T01:CDS
ACTCGGGGTAGCAGTTCCTC+CGG 0.559968 5:+35380509 None:intergenic
GGAACTGAAACGAATAGAGT+TGG 0.561499 5:-35383382 MsG0580026362.01.T01:five_prime_UTR
GAGGAAACTTACCTTTACTC+GGG 0.563741 5:+35380493 None:intergenic
GGAACTGCTACCCCGAGTAA+AGG 0.566776 5:-35380504 MsG0580026362.01.T01:intron
CCGTGCACCAAAACTAATGC+AGG 0.570869 5:+35383017 None:intergenic
TGTAGCATGTGGAATTGGAA+GGG 0.581070 5:-35383077 MsG0580026362.01.T01:intron
CCTTGGGAACCAATTGAGAT+GGG 0.581860 5:-35380354 MsG0580026362.01.T01:CDS
GAGAAAGAACCTGAGGGCAA+TGG 0.584329 5:+35380274 None:intergenic
AACAGAACCACAAATCTGCA+AGG 0.584434 5:-35381639 MsG0580026362.01.T01:CDS
TTTGATAGCATGGGGTGACA+AGG 0.592047 5:-35380379 MsG0580026362.01.T01:CDS
GATGAGCTGCACTAGCTCAT+CGG 0.595522 5:+35380604 None:intergenic
ATCAATAGAGTATACACGGT+GGG 0.595926 5:+35381956 None:intergenic
ACAAAACTCATTTAATTGTG+CGG 0.599912 5:+35381854 None:intergenic
ATAGAAAGAAAGCAAGTGCA+TGG 0.605972 5:+35380246 None:intergenic
ACAGAACCACAAATCTGCAA+GGG 0.606953 5:-35381638 MsG0580026362.01.T01:CDS
ATGGGAGAGAGTGAGAGTTG+TGG 0.607464 5:+35383329 None:intergenic
CTCAGGAGGCCCTCTTCCGG+AGG 0.608570 5:-35380525 MsG0580026362.01.T01:CDS
AGAAAGACATCTACAGCACC+AGG 0.613950 5:+35380563 None:intergenic
GGCATGAGAGAAAGAACCTG+AGG 0.648647 5:+35380267 None:intergenic
TTCATTGCAGTGATCACTGG+AGG 0.653001 5:-35382004 MsG0580026362.01.T01:CDS
AAGAGCTCGATGTTCAAACC+AGG 0.666733 5:-35383197 MsG0580026362.01.T01:intron
GCATGAGAGAAAGAACCTGA+GGG 0.678509 5:+35380268 None:intergenic
TATCAATATTCTGGGAACAA+CGG 0.681480 5:-35383041 MsG0580026362.01.T01:CDS
ATGAAAGGTCTTGCATACCA+AGG 0.685966 5:+35381566 None:intergenic
GAATCGTCTCCAATTTGACG+AGG 0.688025 5:+35381900 None:intergenic
TAAGATCAATAGAGTATACA+CGG 0.690646 5:+35381952 None:intergenic
AGGAAACTTACCTTTACTCG+GGG 0.694986 5:+35380494 None:intergenic
GATCAATAGAGTATACACGG+TGG 0.791426 5:+35381955 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTCAAGAATAAAGAAAAT+AGG + Chr5:35381330-35381349 None:intergenic 15.0%
!! ATATCACATATTTATTGTAA+GGG - Chr5:35381437-35381456 MsG0580026362.01.T01:intron 15.0%
!! TATATCACATATTTATTGTA+AGG - Chr5:35381436-35381455 MsG0580026362.01.T01:intron 15.0%
!!! TAGAATAATTTAAAATAACC+TGG + Chr5:35381778-35381797 None:intergenic 15.0%
!! AAATAGATCTTGAATTAACT+GGG + Chr5:35381005-35381024 None:intergenic 20.0%
!! ATTATCAAGGTTTATGTTAT+AGG - Chr5:35382070-35382089 MsG0580026362.01.T01:intron 20.0%
!! TAAATAGATCTTGAATTAAC+TGG + Chr5:35381006-35381025 None:intergenic 20.0%
!! TATAACATAAACCTTGATAA+TGG + Chr5:35382071-35382090 None:intergenic 20.0%
!! TCTTTATAAATTGACAAACA+AGG - Chr5:35382818-35382837 MsG0580026362.01.T01:intron 20.0%
!! TTATAAAGAATGATACACAT+TGG + Chr5:35382807-35382826 None:intergenic 20.0%
!! TTATCAAGGTTTATGTTATA+GGG - Chr5:35382071-35382090 MsG0580026362.01.T01:intron 20.0%
!! TTCATTTCAATTAAAAATGC+AGG - Chr5:35381405-35381424 MsG0580026362.01.T01:CDS 20.0%
!! TTCTTTATATGCAATTCTAT+TGG - Chr5:35381712-35381731 MsG0580026362.01.T01:intron 20.0%
!! TTTATATAGAATCTTGCTAA+CGG - Chr5:35380704-35380723 MsG0580026362.01.T01:intron 20.0%
!!! AGAAGTTTCATTTTATTGAA+CGG - Chr5:35382013-35382032 MsG0580026362.01.T01:CDS 20.0%
!!! GAGTTATTTATCAATTTTCT+GGG - Chr5:35382604-35382623 MsG0580026362.01.T01:intron 20.0%
!!! TGAGTTATTTATCAATTTTC+TGG - Chr5:35382603-35382622 MsG0580026362.01.T01:intron 20.0%
!!! TGTTCATTTACATGAATTTT+TGG + Chr5:35381065-35381084 None:intergenic 20.0%
!!! TTCATTTTGAATGCTTAATT+TGG + Chr5:35380304-35380323 None:intergenic 20.0%
! AACAAGTTAAAAGAATTACC+TGG + Chr5:35380343-35380362 None:intergenic 25.0%
! AATATTCGCTATCAATATTC+TGG - Chr5:35380469-35380488 MsG0580026362.01.T01:intron 25.0%
! ACAAAACTCATTTAATTGTG+CGG + Chr5:35381668-35381687 None:intergenic 25.0%
! ATATTCGCTATCAATATTCT+GGG - Chr5:35380470-35380489 MsG0580026362.01.T01:intron 25.0%
! ATTAACCACTTGAGTTTAAT+TGG + Chr5:35381105-35381124 None:intergenic 25.0%
! CATAAGTGTTTGATATTGTT+AGG + Chr5:35382768-35382787 None:intergenic 25.0%
! CTTTCATAATTCTTTAACCA+GGG - Chr5:35380832-35380851 MsG0580026362.01.T01:intron 25.0%
! GTATACTCTATTGATCTTAT+TGG - Chr5:35381571-35381590 MsG0580026362.01.T01:CDS 25.0%
! TAAGATCAATAGAGTATACA+CGG + Chr5:35381570-35381589 None:intergenic 25.0%
! TACGCAAAGATATATTAAGA+AGG + Chr5:35381913-35381932 None:intergenic 25.0%
! TAGTAATAGGTCTTTATTCT+TGG + Chr5:35382742-35382761 None:intergenic 25.0%
! TATCAGATACCGATATTAAA+TGG + Chr5:35380580-35380599 None:intergenic 25.0%
! TATTGTTAGGACTTAGTAAT+AGG + Chr5:35382755-35382774 None:intergenic 25.0%
! TATTTATTGTAAGGGTCTTA+TGG - Chr5:35381445-35381464 MsG0580026362.01.T01:intron 25.0%
! TCTATTGATCTTATTGGATA+TGG - Chr5:35381577-35381596 MsG0580026362.01.T01:CDS 25.0%
! TGCTACAAGTACAAAATAAA+AGG + Chr5:35380429-35380448 None:intergenic 25.0%
! TTCACAATTAGTATAGTTTC+AGG + Chr5:35382853-35382872 None:intergenic 25.0%
! TTGATATTTAATTACTGACC+AGG - Chr5:35381757-35381776 MsG0580026362.01.T01:intron 25.0%
! TTTATATGCAATTCTATTGG+AGG - Chr5:35381715-35381734 MsG0580026362.01.T01:intron 25.0%
!!! AACACTTTTTCAACTTTCAA+AGG - Chr5:35380779-35380798 MsG0580026362.01.T01:intron 25.0%
!!! CATTTACATGAATTTTTGGA+CGG + Chr5:35381061-35381080 None:intergenic 25.0%
!!! TTCTGATATTATTTTTGTGC+AGG - Chr5:35381833-35381852 MsG0580026362.01.T01:CDS 25.0%
!!! TTGAATTTTTTCATGAGTAG+AGG - Chr5:35381343-35381362 MsG0580026362.01.T01:intron 25.0%
AACGAATAACTCAAACTTGA+TGG - Chr5:35382493-35382512 MsG0580026362.01.T01:intron 30.0%
AATAGGAAGTAAGGATGTTA+AGG - Chr5:35383365-35383384 MsG0580026362.01.T01:exon 30.0%
AGATACTCCAAAAATAGAGA+CGG + Chr5:35380608-35380627 None:intergenic 30.0%
AGTAAAAAATTGTTCCACTC+TGG + Chr5:35381171-35381190 None:intergenic 30.0%
ATAGGAAGTAAGGATGTTAA+GGG - Chr5:35383366-35383385 MsG0580026362.01.T01:exon 30.0%
ATATGTAGCAATAGGAAGTA+AGG - Chr5:35383356-35383375 MsG0580026362.01.T01:exon 30.0%
ATTGAGATGGGAAGAAATTA+CGG - Chr5:35383177-35383196 MsG0580026362.01.T01:intron 30.0%
CCTGGTTAAAGAATTATGAA+AGG + Chr5:35380834-35380853 None:intergenic 30.0%
CCTTTCATAATTCTTTAACC+AGG - Chr5:35380831-35380850 MsG0580026362.01.T01:intron 30.0%
TAATAGGTCTTTATTCTTGG+AGG + Chr5:35382739-35382758 None:intergenic 30.0%
TAATTTCTTCCCATCTCAAT+TGG + Chr5:35383177-35383196 None:intergenic 30.0%
TTCATTGTTCTTCCAAATGT+TGG - Chr5:35383222-35383241 MsG0580026362.01.T01:CDS 30.0%
TTCTTAATCTCATTATTCGC+CGG - Chr5:35380551-35380570 MsG0580026362.01.T01:CDS 30.0%
TTTACAAGTGATTGTGTTTG+AGG - Chr5:35380951-35380970 MsG0580026362.01.T01:intron 30.0%
! AGTTTGAGTTATTCGTTGTT+CGG + Chr5:35382490-35382509 None:intergenic 30.0%
! ATTTCTCTTATTTCAGTGTC+CGG - Chr5:35383116-35383135 MsG0580026362.01.T01:intron 30.0%
! CTTGAGTTTATTTGTTACTC+AGG - Chr5:35382977-35382996 MsG0580026362.01.T01:intron 30.0%
! CTTTTACACGTTTGATACAT+GGG - Chr5:35381642-35381661 MsG0580026362.01.T01:CDS 30.0%
! GAATAATCTAAAACAACCCA+TGG - Chr5:35380890-35380909 MsG0580026362.01.T01:intron 30.0%
! TACAATTCCGTCTCTATTTT+TGG - Chr5:35380598-35380617 MsG0580026362.01.T01:CDS 30.0%
! TATCAATATTCTGGGAACAA+CGG - Chr5:35380478-35380497 MsG0580026362.01.T01:intron 30.0%
! TATTTTGTACTTGTAGCATG+TGG - Chr5:35380431-35380450 MsG0580026362.01.T01:intron 30.0%
!! AATCAGATAGTGTTTTTACG+TGG - Chr5:35380378-35380397 MsG0580026362.01.T01:CDS 30.0%
!! ATAGTGTTTTTACGTGGAAT+TGG - Chr5:35380384-35380403 MsG0580026362.01.T01:CDS 30.0%
!! TTGTTGATGAGAACGAATTT+TGG + Chr5:35380238-35380257 None:intergenic 30.0%
!!! GAGTGGAACAATTTTTTACT+AGG - Chr5:35381171-35381190 MsG0580026362.01.T01:intron 30.0%
!!! TCTCTATTTTTGGAGTATCT+CGG - Chr5:35380608-35380627 MsG0580026362.01.T01:CDS 30.0%
!!! TTACGGAAATTTTGATTCAG+TGG - Chr5:35383194-35383213 MsG0580026362.01.T01:intron 30.0%
AAAAATGCAAACACTCTGAC+GGG - Chr5:35382310-35382329 MsG0580026362.01.T01:intron 35.0%
AAACCAAATCCTCGTCAAAT+TGG - Chr5:35381610-35381629 MsG0580026362.01.T01:CDS 35.0%
AACAACTTATGACATGTCCA+TGG + Chr5:35380910-35380929 None:intergenic 35.0%
AAGTGATTAGATGCTGTTGA+GGG + Chr5:35382351-35382370 None:intergenic 35.0%
ACAACTTATGACATGTCCAT+GGG + Chr5:35380909-35380928 None:intergenic 35.0%
ACCAACCAATTAAACTCAAG+TGG - Chr5:35381097-35381116 MsG0580026362.01.T01:intron 35.0%
ACCACTTGAGTTTAATTGGT+TGG + Chr5:35381101-35381120 None:intergenic 35.0%
AGTAAATGCTCCAGTCATTA+TGG + Chr5:35381242-35381261 None:intergenic 35.0%
ATAGAAAGAAAGCAAGTGCA+TGG + Chr5:35383276-35383295 None:intergenic 35.0%
ATCAATAGAGTATACACGGT+GGG + Chr5:35381566-35381585 None:intergenic 35.0%
ATCTGTACCTAAGCAATCTT+TGG + Chr5:35381988-35382007 None:intergenic 35.0%
CCATGTATCAAACGTGTAAA+AGG + Chr5:35381644-35381663 None:intergenic 35.0%
CTGGCATAAAATGTTCTTCA+CGG + Chr5:35382145-35382164 None:intergenic 35.0%
GAAAAATGCAAACACTCTGA+CGG - Chr5:35382309-35382328 MsG0580026362.01.T01:intron 35.0%
GTTCATTCCAAAGATTGCTT+AGG - Chr5:35381978-35381997 MsG0580026362.01.T01:CDS 35.0%
TAAGTGATTAGATGCTGTTG+AGG + Chr5:35382352-35382371 None:intergenic 35.0%
TACCGATATTAAATGGACAC+CGG + Chr5:35380573-35380592 None:intergenic 35.0%
TCACACGTATATGTAGCAAT+AGG - Chr5:35383348-35383367 MsG0580026362.01.T01:CDS 35.0%
TCATGTTCAAACCTTAAGCA+GGG - Chr5:35382039-35382058 MsG0580026362.01.T01:intron 35.0%
TCTATTGATGTCAAGCACTT+GGG - Chr5:35382386-35382405 MsG0580026362.01.T01:intron 35.0%
TGCTTGACATCAATAGAGTA+AGG + Chr5:35382383-35382402 None:intergenic 35.0%
TGTTATAGGGATACTTCTGT+TGG - Chr5:35382084-35382103 MsG0580026362.01.T01:intron 35.0%
TTCATATAAAGAAGCAGCCT+TGG - Chr5:35381936-35381955 MsG0580026362.01.T01:CDS 35.0%
TTCATGTTCAAACCTTAAGC+AGG - Chr5:35382038-35382057 MsG0580026362.01.T01:intron 35.0%
TTCCTAAACAAATGCTTCCT+AGG - Chr5:35382678-35382697 MsG0580026362.01.T01:intron 35.0%
TTCTAATGTAACTCCTCTTC+TGG + Chr5:35382639-35382658 None:intergenic 35.0%
! CATTTTTCTCTGCTTATTGC+AGG + Chr5:35382297-35382316 None:intergenic 35.0%
! CCTTTTACACGTTTGATACA+TGG - Chr5:35381641-35381660 MsG0580026362.01.T01:CDS 35.0%
! GAGTTTATTTGTTACTCAGG+AGG - Chr5:35382980-35382999 MsG0580026362.01.T01:intron 35.0%
! GTTTGAGTTATTCGTTGTTC+GGG + Chr5:35382489-35382508 None:intergenic 35.0%
! GTTTTGTCTTGATGTCGTTA+AGG - Chr5:35381681-35381700 MsG0580026362.01.T01:intron 35.0%
!! CTTTGGAATGAACTGATGAA+AGG + Chr5:35381971-35381990 None:intergenic 35.0%
!! TATTTTTGTGCAGGAGTTGT+AGG - Chr5:35381842-35381861 MsG0580026362.01.T01:CDS 35.0%
!!! AGAACGAATTTTGGAGTAAG+GGG + Chr5:35380229-35380248 None:intergenic 35.0%
!!! CTTCGATAGCTAGCTTTTAA+GGG + Chr5:35382419-35382438 None:intergenic 35.0%
!!! GAGAACGAATTTTGGAGTAA+GGG + Chr5:35380230-35380249 None:intergenic 35.0%
!!! TCTTCGATAGCTAGCTTTTA+AGG + Chr5:35382420-35382439 None:intergenic 35.0%
!!! TGAGAACGAATTTTGGAGTA+AGG + Chr5:35380231-35380250 None:intergenic 35.0%
!!! TTCAGTTTTGAGCATCAACA+AGG + Chr5:35382274-35382293 None:intergenic 35.0%
AAAAGGCCACAGCCTTAATT+GGG + Chr5:35382704-35382723 None:intergenic 40.0%
AACAGAACCACAAATCTGCA+AGG - Chr5:35381880-35381899 MsG0580026362.01.T01:CDS 40.0%
AACTTCCCACTTCCTCATAT+AGG + Chr5:35383056-35383075 None:intergenic 40.0%
AATGGTAAATCCCCTGCTTA+AGG + Chr5:35382053-35382072 None:intergenic 40.0%
ACAGAACCACAAATCTGCAA+GGG - Chr5:35381881-35381900 MsG0580026362.01.T01:CDS 40.0%
AGAATGATACACATTGGAGC+TGG + Chr5:35382801-35382820 None:intergenic 40.0%
AGAATTCCCTTGCAGATTTG+TGG + Chr5:35381890-35381909 None:intergenic 40.0%
AGGAAACTTACCTTTACTCG+GGG + Chr5:35383028-35383047 None:intergenic 40.0%
AGGTCTTTATTCTTGGAGGA+AGG + Chr5:35382735-35382754 None:intergenic 40.0%
ATGAAAGGTCTTGCATACCA+AGG + Chr5:35381956-35381975 None:intergenic 40.0%
CAGGGGATTTACCATTATCA+AGG - Chr5:35382057-35382076 MsG0580026362.01.T01:intron 40.0%
CATGTTCAAACCTTAAGCAG+GGG - Chr5:35382040-35382059 MsG0580026362.01.T01:intron 40.0%
CTATTGATGTCAAGCACTTG+GGG - Chr5:35382387-35382406 MsG0580026362.01.T01:intron 40.0%
CTCTATTGATGTCAAGCACT+TGG - Chr5:35382385-35382404 MsG0580026362.01.T01:intron 40.0%
CTTGCTAACGGCATTAGTTA+AGG - Chr5:35380716-35380735 MsG0580026362.01.T01:intron 40.0%
GAGGAAACTTACCTTTACTC+GGG + Chr5:35383029-35383048 None:intergenic 40.0%
GATCAATAGAGTATACACGG+TGG + Chr5:35381567-35381586 None:intergenic 40.0%
GCTCCAGTCATTATGGAAAT+GGG + Chr5:35381235-35381254 None:intergenic 40.0%
GGAACTGAAACGAATAGAGT+TGG - Chr5:35380137-35380156 MsG0580026362.01.T01:CDS 40.0%
GGAGGAAACTTACCTTTACT+CGG + Chr5:35383030-35383049 None:intergenic 40.0%
GTACTTGTAGCATGTGGAAT+TGG - Chr5:35380437-35380456 MsG0580026362.01.T01:intron 40.0%
GTTCTCCAGAACAATTTGTC+CGG + Chr5:35381137-35381156 None:intergenic 40.0%
TCTCCAATTTGACGAGGATT+TGG + Chr5:35381616-35381635 None:intergenic 40.0%
TCTTTATTCTTGGAGGAAGG+TGG + Chr5:35382732-35382751 None:intergenic 40.0%
TGCTCCAGTCATTATGGAAA+TGG + Chr5:35381236-35381255 None:intergenic 40.0%
TGTAGCATGTGGAATTGGAA+GGG - Chr5:35380442-35380461 MsG0580026362.01.T01:intron 40.0%
TGTTAAGCTAGAAGGATACC+TGG + Chr5:35382164-35382183 None:intergenic 40.0%
TTCTCCAGAACAATTTGTCC+GGG + Chr5:35381136-35381155 None:intergenic 40.0%
TTGTAGCATGTGGAATTGGA+AGG - Chr5:35380441-35380460 MsG0580026362.01.T01:intron 40.0%
! ACTTGTTAGCTTCGCTATCT+AGG - Chr5:35380856-35380875 MsG0580026362.01.T01:intron 40.0%
! ATTGTAAGGGTCTTATGGCT+AGG - Chr5:35381450-35381469 MsG0580026362.01.T01:intron 40.0%
! CGTGAAGAACATTTTATGCC+AGG - Chr5:35382143-35382162 MsG0580026362.01.T01:intron 40.0%
!! TGTTTAGGAAGCATTGTAGC+TGG + Chr5:35382668-35382687 None:intergenic 40.0%
!! TTCCACTCTGGAATCGAAAT+CGG + Chr5:35381159-35381178 None:intergenic 40.0%
!!! GATAGCTAGCTTTTAAGGGA+GGG + Chr5:35382415-35382434 None:intergenic 40.0%
!!! TTAGTTTTGGTGCACGGTTT+CGG - Chr5:35380508-35380527 MsG0580026362.01.T01:CDS 40.0%
AAGAGCTCGATGTTCAAACC+AGG - Chr5:35380322-35380341 MsG0580026362.01.T01:CDS 45.0%
AGAAAGACATCTACAGCACC+AGG + Chr5:35382959-35382978 None:intergenic 45.0%
AGTAAGGATGTTAAGGGAGC+AGG - Chr5:35383372-35383391 MsG0580026362.01.T01:five_prime_UTR 45.0%
AGTGGTTAATGAGATCCACC+CGG - Chr5:35381115-35381134 MsG0580026362.01.T01:intron 45.0%
ATGCTTCCTAGGCCCAATTA+AGG - Chr5:35382689-35382708 MsG0580026362.01.T01:intron 45.0%
CACTTCATTGCAGTGATCAC+TGG - Chr5:35381512-35381531 MsG0580026362.01.T01:intron 45.0%
CCTTGGGAACCAATTGAGAT+GGG - Chr5:35383165-35383184 MsG0580026362.01.T01:intron 45.0%
CGCCGGTGTCCATTTAATAT+CGG - Chr5:35380568-35380587 MsG0580026362.01.T01:CDS 45.0%
GAAAAGGCCACAGCCTTAAT+TGG + Chr5:35382705-35382724 None:intergenic 45.0%
GAATCGTCTCCAATTTGACG+AGG + Chr5:35381622-35381641 None:intergenic 45.0%
GCATGAGAGAAAGAACCTGA+GGG + Chr5:35383254-35383273 None:intergenic 45.0%
GGAAAGGGAAACCTATGGAA+GGG + Chr5:35382523-35382542 None:intergenic 45.0%
GGACCCATTTCCATAATGAC+TGG - Chr5:35381229-35381248 MsG0580026362.01.T01:intron 45.0%
GTCATTATGGAAATGGGTCC+TGG + Chr5:35381229-35381248 None:intergenic 45.0%
GTCTTATGGCTAGGTCTGTT+TGG - Chr5:35381459-35381478 MsG0580026362.01.T01:intron 45.0%
TAGCTGCGTGTTAAGCTAGA+AGG + Chr5:35382172-35382191 None:intergenic 45.0%
TCACCCCATGCTATCAAAAC+CGG + Chr5:35383138-35383157 None:intergenic 45.0%
TCCTTGGGAACCAATTGAGA+TGG - Chr5:35383164-35383183 MsG0580026362.01.T01:intron 45.0%
TGCTCGGGCAAGTATTTAAG+AGG + Chr5:35382455-35382474 None:intergenic 45.0%
TGGGAATGAACATCCAGAAG+AGG - Chr5:35382623-35382642 MsG0580026362.01.T01:intron 45.0%
TTATTCTTGGAGGAAGGTGG+AGG + Chr5:35382729-35382748 None:intergenic 45.0%
TTCATTGCAGTGATCACTGG+AGG - Chr5:35381515-35381534 MsG0580026362.01.T01:intron 45.0%
! AACCGATTTCGATTCCAGAG+TGG - Chr5:35381154-35381173 MsG0580026362.01.T01:intron 45.0%
! ATACACGGTGGGATTTTGCT+AGG + Chr5:35381555-35381574 None:intergenic 45.0%
! TTTGATAGCATGGGGTGACA+AGG - Chr5:35383140-35383159 MsG0580026362.01.T01:intron 45.0%
!! AGTGTCCGGTTTTGATAGCA+TGG - Chr5:35383130-35383149 MsG0580026362.01.T01:intron 45.0%
!! CAACGGTCCTGCATTAGTTT+TGG - Chr5:35380495-35380514 MsG0580026362.01.T01:intron 45.0%
!! GGCCTAGGAAGCATTTGTTT+AGG + Chr5:35382683-35382702 None:intergenic 45.0%
!! GTGTCCGGTTTTGATAGCAT+GGG - Chr5:35383131-35383150 MsG0580026362.01.T01:intron 45.0%
!! TGTCCGGTTTTGATAGCATG+GGG - Chr5:35383132-35383151 MsG0580026362.01.T01:intron 45.0%
!!! CCTGCATTAGTTTTGGTGCA+CGG - Chr5:35380502-35380521 MsG0580026362.01.T01:intron 45.0%
!!! CGATAGCTAGCTTTTAAGGG+AGG + Chr5:35382416-35382435 None:intergenic 45.0%
!!! TGTTATTTTTTTTATTTTTT+TGG + Chr5:35381265-35381284 None:intergenic 5.0%
AAATGTTGGCCATTGCCCTC+AGG - Chr5:35383236-35383255 MsG0580026362.01.T01:CDS 50.0%
AAGGGAGCAGGAACGTTGTA+AGG - Chr5:35383384-35383403 MsG0580026362.01.T01:five_prime_UTR 50.0%
AAGGGGATAGTGTTCGAGGA+TGG + Chr5:35380212-35380231 None:intergenic 50.0%
ACTTCCTCATATAGGCTGGG+AGG + Chr5:35383048-35383067 None:intergenic 50.0%
AGCTCGGAAAGGGAAACCTA+TGG + Chr5:35382528-35382547 None:intergenic 50.0%
AGGGGATAGTGTTCGAGGAT+GGG + Chr5:35380211-35380230 None:intergenic 50.0%
ATGGGAGAGAGTGAGAGTTG+TGG + Chr5:35380193-35380212 None:intergenic 50.0%
ATGGGGTGACAAGGATCCTT+GGG - Chr5:35383149-35383168 MsG0580026362.01.T01:intron 50.0%
CACTAGCTCATCGGTCACTT+TGG + Chr5:35382909-35382928 None:intergenic 50.0%
CCCACTTCCTCATATAGGCT+GGG + Chr5:35383051-35383070 None:intergenic 50.0%
CCCAGCCTATATGAGGAAGT+GGG - Chr5:35383048-35383067 MsG0580026362.01.T01:CDS 50.0%
CCGTGCACCAAAACTAATGC+AGG + Chr5:35380505-35380524 None:intergenic 50.0%
CGCTATCTAGGAGAGCTTAG+AGG - Chr5:35380868-35380887 MsG0580026362.01.T01:intron 50.0%
CGGAAAGGGAAACCTATGGA+AGG + Chr5:35382524-35382543 None:intergenic 50.0%
CTGGTAATCCGGAGTTTGGT+CGG + Chr5:35381210-35381229 None:intergenic 50.0%
CTGGTACCAAGGATGGAAAC+TGG - Chr5:35382548-35382567 MsG0580026362.01.T01:intron 50.0%
GAGAAAGAACCTGAGGGCAA+TGG + Chr5:35383248-35383267 None:intergenic 50.0%
GAGTAAGGGGATAGTGTTCG+AGG + Chr5:35380216-35380235 None:intergenic 50.0%
GATGAGCTGCACTAGCTCAT+CGG + Chr5:35382918-35382937 None:intergenic 50.0%
GGAAATGGGTCCTGGTAATC+CGG + Chr5:35381221-35381240 None:intergenic 50.0%
GGCATGAGAGAAAGAACCTG+AGG + Chr5:35383255-35383274 None:intergenic 50.0%
GTCAGACCAGTTTCCATCCT+TGG + Chr5:35382557-35382576 None:intergenic 50.0%
GTTTCCTCCCAGCCTATATG+AGG - Chr5:35383041-35383060 MsG0580026362.01.T01:CDS 50.0%
TCCACCCGGACAAATTGTTC+TGG - Chr5:35381129-35381148 MsG0580026362.01.T01:intron 50.0%
TCCAGAACAATTTGTCCGGG+TGG + Chr5:35381133-35381152 None:intergenic 50.0%
TCCCACTTCCTCATATAGGC+TGG + Chr5:35383052-35383071 None:intergenic 50.0%
TCCCAGCCTATATGAGGAAG+TGG - Chr5:35383047-35383066 MsG0580026362.01.T01:CDS 50.0%
TCGGGCAAGTATGAGATGCT+CGG + Chr5:35382471-35382490 None:intergenic 50.0%
TGAGGGCAATGGCCAACATT+TGG + Chr5:35383237-35383256 None:intergenic 50.0%
TGCAGCTCATCCTTAGTCCA+GGG - Chr5:35382927-35382946 MsG0580026362.01.T01:intron 50.0%
TGCAGGAGTTGTAGGTCTTC+AGG - Chr5:35381850-35381869 MsG0580026362.01.T01:CDS 50.0%
TGGTAATCCGGAGTTTGGTC+GGG + Chr5:35381209-35381228 None:intergenic 50.0%
TTGGTACCAGAGCTCGGAAA+GGG + Chr5:35382538-35382557 None:intergenic 50.0%
! CCCATCTCAATTGGTTCCCA+AGG + Chr5:35383168-35383187 None:intergenic 50.0%
! TTGATGGTCTGCCCTTCCAT+AGG - Chr5:35382509-35382528 MsG0580026362.01.T01:intron 50.0%
AGCGAAGCTAACAAGTGCCC+TGG + Chr5:35380852-35380871 None:intergenic 55.0%
AGGTTTCCCTTTCCGAGCTC+TGG - Chr5:35382529-35382548 MsG0580026362.01.T01:intron 55.0%
CATGGGGTGACAAGGATCCT+TGG - Chr5:35383148-35383167 MsG0580026362.01.T01:intron 55.0%
CCACAGCCTTAATTGGGCCT+AGG + Chr5:35382698-35382717 None:intergenic 55.0%
CCATCCTTGGTACCAGAGCT+CGG + Chr5:35382544-35382563 None:intergenic 55.0%
CCTAGGCCCAATTAAGGCTG+TGG - Chr5:35382695-35382714 MsG0580026362.01.T01:intron 55.0%
CGACCAAACTCCGGATTACC+AGG - Chr5:35381208-35381227 MsG0580026362.01.T01:intron 55.0%
CGGGCAAGTATGAGATGCTC+GGG + Chr5:35382470-35382489 None:intergenic 55.0%
CTTGGTACCAGAGCTCGGAA+AGG + Chr5:35382539-35382558 None:intergenic 55.0%
GGAACTGCTACCCCGAGTAA+AGG - Chr5:35383015-35383034 MsG0580026362.01.T01:CDS 55.0%
GGAGAGAGTGAGAGTTGTGG+TGG + Chr5:35380190-35380209 None:intergenic 55.0%
GGAGGAAGGTGGAGGAGAAA+AGG + Chr5:35382721-35382740 None:intergenic 55.0%
GGTCCTGGTAATCCGGAGTT+TGG + Chr5:35381214-35381233 None:intergenic 55.0%
GTAGCAGTTCCTCCGGAAGA+GGG + Chr5:35383006-35383025 None:intergenic 55.0%
GTGCAGCTCATCCTTAGTCC+AGG - Chr5:35382926-35382945 MsG0580026362.01.T01:intron 55.0%
TAATCCGGAGTTTGGTCGGG+AGG + Chr5:35381206-35381225 None:intergenic 55.0%
TGCACGGTTTCGGAGCTAAC+AGG - Chr5:35380518-35380537 MsG0580026362.01.T01:CDS 55.0%
TTACTCAGGAGGCCCTCTTC+CGG - Chr5:35382991-35383010 MsG0580026362.01.T01:intron 55.0%
! ATGCAAACACTCTGACGGGC+TGG - Chr5:35382314-35382333 MsG0580026362.01.T01:intron 55.0%
! CGGTGGGATTTTGCTAGGTC+TGG + Chr5:35381550-35381569 None:intergenic 55.0%
! CTTTCCGAGCTCTGGTACCA+AGG - Chr5:35382537-35382556 MsG0580026362.01.T01:intron 55.0%
ACTCGGGGTAGCAGTTCCTC+CGG + Chr5:35383013-35383032 None:intergenic 60.0%
CAGGTTCCAGCCCTGGACTA+AGG + Chr5:35382940-35382959 None:intergenic 60.0%
CTTAGTCCAGGGCTGGAACC+TGG - Chr5:35382938-35382957 MsG0580026362.01.T01:intron 60.0%
CTTGCCTCCCGACCAAACTC+CGG - Chr5:35381199-35381218 MsG0580026362.01.T01:intron 60.0%
GCTCATCCTTAGTCCAGGGC+TGG - Chr5:35382931-35382950 MsG0580026362.01.T01:intron 60.0%
GGTAGCAGTTCCTCCGGAAG+AGG + Chr5:35383007-35383026 None:intergenic 60.0%
! CCGAGCTCTGGTACCAAGGA+TGG - Chr5:35382541-35382560 MsG0580026362.01.T01:intron 60.0%
!! CACTCTGACGGGCTGGTTTC+TGG - Chr5:35382321-35382340 MsG0580026362.01.T01:intron 60.0%
ACAGCACCAGGTTCCAGCCC+TGG + Chr5:35382947-35382966 None:intergenic 65.0%
CTCAGGAGGCCCTCTTCCGG+AGG - Chr5:35382994-35383013 MsG0580026362.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr5 gene 35380137 35383404 35380137 ID=MsG0580026362.01;Name=MsG0580026362.01
Chr5 mRNA 35380137 35383404 35380137 ID=MsG0580026362.01.T01;Parent=MsG0580026362.01;Name=MsG0580026362.01.T01;_AED=0.40;_eAED=0.41;_QI=37|0.83|0.57|1|0.83|0.71|7|0|377
Chr5 exon 35383198 35383404 35383198 ID=MsG0580026362.01.T01:exon:16719;Parent=MsG0580026362.01.T01
Chr5 exon 35382998 35383094 35382998 ID=MsG0580026362.01.T01:exon:16720;Parent=MsG0580026362.01.T01
Chr5 exon 35381805 35382033 35381805 ID=MsG0580026362.01.T01:exon:16721;Parent=MsG0580026362.01.T01
Chr5 exon 35381542 35381686 35381542 ID=MsG0580026362.01.T01:exon:16722;Parent=MsG0580026362.01.T01
Chr5 exon 35381377 35381449 35381377 ID=MsG0580026362.01.T01:exon:16723;Parent=MsG0580026362.01.T01
Chr5 exon 35380505 35380651 35380505 ID=MsG0580026362.01.T01:exon:16724;Parent=MsG0580026362.01.T01
Chr5 exon 35380137 35380409 35380137 ID=MsG0580026362.01.T01:exon:16725;Parent=MsG0580026362.01.T01
Chr5 five_prime_UTR 35383368 35383404 35383368 ID=MsG0580026362.01.T01:five_prime_utr;Parent=MsG0580026362.01.T01
Chr5 CDS 35383198 35383367 35383198 ID=MsG0580026362.01.T01:cds;Parent=MsG0580026362.01.T01
Chr5 CDS 35382998 35383094 35382998 ID=MsG0580026362.01.T01:cds;Parent=MsG0580026362.01.T01
Chr5 CDS 35381805 35382033 35381805 ID=MsG0580026362.01.T01:cds;Parent=MsG0580026362.01.T01
Chr5 CDS 35381542 35381686 35381542 ID=MsG0580026362.01.T01:cds;Parent=MsG0580026362.01.T01
Chr5 CDS 35381377 35381449 35381377 ID=MsG0580026362.01.T01:cds;Parent=MsG0580026362.01.T01
Chr5 CDS 35380505 35380651 35380505 ID=MsG0580026362.01.T01:cds;Parent=MsG0580026362.01.T01
Chr5 CDS 35380137 35380409 35380137 ID=MsG0580026362.01.T01:cds;Parent=MsG0580026362.01.T01
Gene Sequence

>MsG0580026362.01.T01

ATGACATTTGCTTCCACCACAACTCTCACTCTCTCCCATCCTCGAACACTATCCCCTTACTCCAAAATTCGTTCTCATCAACAAAACAGTGTCGTTGCATTTTCTAGCTTCAGTAATCAAATTGTTTCCAAATTAAGCATTCAAAATGAAGAGCTCGATGTTCAAACCAGCATGTGGAATTGGAAGGGTTACAATATTCGCTATCAATATTCTGGGAACAACGGTCCTGCATTAGTTTTGGTGCACGGTTTCGGAGCTAACAGGTCTAATACACTTCATTGCAGTGATCACTGGAGGAAAAATATTCCAGACCTAGCAAAATCCCACCGTGTATACTCTATTGATCTTATTGGATATGGATATTCAGACAAACCAAATCCTCGTCAAATTGGAGACGATTCCTTTTACACGTTTGATACATGGGCCGCACAATTAAATGAGTTTTGTCTTGATGTCGTTAAGGATGAAGCATTCTTTATATGCAATTCTATTGGAGGAGTTGTAGGTCTTCAGGCAGCTATAACAGAACCACAAATCTGCAAGGGAATTCTCCTTCTTAATATATCTTTGCGTATGCTTCATATAAAGAAGCAGCCTTGGTATGCAAGACCTTTCATCAGTTCATTCCAAAGATTGCTTAGGGATACTTCTGTTGGAAAATTCTTCTTTAAAGCTGTTGCAACGAAAGAATCCGTGAAGAACATTTTATGCCAGTGCTATCATGACACTTCCAAAGTGACCGATGAGCTAGTGCAGCTCATCCTTAGTCCAGGGCTGGAACCTGGTGCTGTAGATGTCTTTCTTGAGTTTATTTGTTACTCAGGAGGCCCTCTTCCGGAGGAACTGCTACCCCGAGTAAAGTGTCCGGTTTTGATAGCATGGGGTGACAAGGATCCTTGGGAACCAATTGAGATGGGAAGAAATTACGGAAATTTTGATTCAGTGGAAGACTTCATTGTTCTTCCAAATGTTGGCCATTGCCCTCAGGTTCTTTCTCTCATGCCATGCACTTGCTTTCTTTCTATAATATGTGTGTGTATGTGTGCGCGCGCATGTGAAAGATTTGATTTAGCATTGTCACACGTATATGTAGCAATAGGAAGTAAGGATGTTAAGGGAGCAGGAACGTTGTAA

Protein sequence

>MsG0580026362.01.T01

MTFASTTTLTLSHPRTLSPYSKIRSHQQNSVVAFSSFSNQIVSKLSIQNEELDVQTSMWNWKGYNIRYQYSGNNGPALVLVHGFGANRSNTLHCSDHWRKNIPDLAKSHRVYSIDLIGYGYSDKPNPRQIGDDSFYTFDTWAAQLNEFCLDVVKDEAFFICNSIGGVVGLQAAITEPQICKGILLLNISLRMLHIKKQPWYARPFISSFQRLLRDTSVGKFFFKAVATKESVKNILCQCYHDTSKVTDELVQLILSPGLEPGAVDVFLEFICYSGGPLPEELLPRVKCPVLIAWGDKDPWEPIEMGRNYGNFDSVEDFIVLPNVGHCPQVLSLMPCTCFLSIICVCMCARACERFDLALSHVYVAIGSKDVKGAGTL*