AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680031204.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031204.01.T01 MTR_6g017260 96.266 241 9 0 10 250 9 249 4.97e-172 475
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680031204.01.T01 AT5G38660 80.347 173 34 0 78 250 81 253 6.46e-103 301
MsG0680031204.01.T01 AT5G38660 79.885 174 35 0 77 250 80 253 1.30e-100 300

Find 60 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGAATGGGTGCACTTCTTC+TGG 0.161685 6:+16027297 None:intergenic
GCATTCAAATAACATCATTT+TGG 0.219546 6:+16030587 None:intergenic
TGCTTTATGTTTCAGGGAAA+TGG 0.263031 6:-16027325 MsG0680031204.01.T01:intron
GAAATATGCAGGTATGGTTT+TGG 0.269802 6:-16028813 MsG0680031204.01.T01:intron
ACGACACGTAATCTCAAATT+TGG 0.295507 6:-16030692 MsG0680031204.01.T01:five_prime_UTR
ACAGCTTCTCAGTCTTCTTC+TGG 0.314907 6:-16030390 MsG0680031204.01.T01:CDS
GCATACTTTAATATTCTTCC+TGG 0.340893 6:-16028789 MsG0680031204.01.T01:CDS
CAGATTACCTGTTTAAGAAT+AGG 0.345912 6:+16028138 None:intergenic
GGTTTCCCTCTTGCTATCAT+TGG 0.351215 6:-16028735 MsG0680031204.01.T01:CDS
TGGAAAATATTGTTTGGTCT+TGG 0.379387 6:-16026849 MsG0680031204.01.T01:CDS
AATAACTTACTAGACCATAT+TGG 0.381211 6:+16027693 None:intergenic
CTTAGCATGAAAACATGAAA+TGG 0.393570 6:+16030476 None:intergenic
TGCAACTCCTATTCTTAAAC+AGG 0.400679 6:-16028145 MsG0680031204.01.T01:intron
GAAGAATCAGCAGCTCTTAC+CGG 0.412466 6:+16030420 None:intergenic
TTCATCCCCATAGCGAAATC+TGG 0.420679 6:+16027748 None:intergenic
CCCTCTTGCTATCATTGGCA+TGG 0.426729 6:-16028730 MsG0680031204.01.T01:CDS
ACAAGATGGAAAATATTGTT+TGG 0.433342 6:-16026855 MsG0680031204.01.T01:CDS
AGAATGGGTGCACTTCTTCT+GGG 0.434715 6:+16027298 None:intergenic
ACAAGTGTCCTACTATCAAT+TGG 0.438133 6:+16030363 None:intergenic
TGGGGATGAACAACATTTAG+AGG 0.441869 6:-16027735 MsG0680031204.01.T01:CDS
GGAGACTTTGTGAGTTGAAG+AGG 0.451225 6:+16030522 None:intergenic
TCTGCTATAATGTTAACATA+TGG 0.452103 6:-16028756 MsG0680031204.01.T01:CDS
CAGATTTCATTCGGTACGAT+TGG 0.454241 6:-16028952 MsG0680031204.01.T01:CDS
TTCACGAACCATCTGTAGAA+TGG 0.457796 6:+16027282 None:intergenic
GAGGAGGAAGACAGTGGAAC+CGG 0.468589 6:+16030541 None:intergenic
ATGTTACCAGATTTCGCTAT+GGG 0.475605 6:-16027754 MsG0680031204.01.T01:CDS
CTGGTGTTCCAATTGATAGT+AGG 0.480393 6:-16030371 MsG0680031204.01.T01:CDS
GTGATGGAGATTTCATCATC+AGG 0.487483 6:+16030339 None:intergenic
ATATTCTTCCTGGATCTGAA+TGG 0.487635 6:-16028779 MsG0680031204.01.T01:CDS
TGCAAAGCCGTGTCCTCCTC+CGG 0.488628 6:-16030567 MsG0680031204.01.T01:CDS
ATAGCAGACCATTCAGATCC+AGG 0.491016 6:+16028771 None:intergenic
TCACGAACCATCTGTAGAAT+GGG 0.491160 6:+16027283 None:intergenic
CCGTGTCCTCCTCCGGTCAC+CGG 0.495789 6:-16030560 MsG0680031204.01.T01:CDS
TTTGTTTCAGACACAGCAAA+AGG 0.505901 6:+16030626 None:intergenic
GGTACGATTGGACTAAGTCT+TGG 0.506156 6:-16028940 MsG0680031204.01.T01:CDS
GAATATGTGAGGCAAGGTAC+TGG 0.507805 6:+16028195 None:intergenic
GACTTTGTGAGTTGAAGAGG+AGG 0.509455 6:+16030525 None:intergenic
GTGGAACCGGTGACCGGAGG+AGG 0.512074 6:+16030554 None:intergenic
ATATCTTAGGTCACACAAGA+TGG 0.525117 6:-16026869 MsG0680031204.01.T01:intron
AAGACAGTGGAACCGGTGAC+CGG 0.529473 6:+16030548 None:intergenic
CCGGTGACCGGAGGAGGACA+CGG 0.534166 6:+16030560 None:intergenic
TATCATTGGCATGGCACTCA+AGG 0.540554 6:-16028721 MsG0680031204.01.T01:intron
ACACGTAATCTCAAATTTGG+CGG 0.548834 6:-16030689 MsG0680031204.01.T01:five_prime_UTR
GAATGGGTGCACTTCTTCTG+GGG 0.558241 6:+16027299 None:intergenic
ATTTAGAGGAGGCATTGAAA+CGG 0.563869 6:-16027721 MsG0680031204.01.T01:CDS
TGAAAACATGAAATGGATTG+AGG 0.565908 6:+16030483 None:intergenic
TCTACAGATGGTTCGTGAAG+AGG 0.578965 6:-16027278 MsG0680031204.01.T01:intron
GATGTTACCAGATTTCGCTA+TGG 0.585306 6:-16027755 MsG0680031204.01.T01:CDS
TGATGAAATCTCCATCACTA+AGG 0.585694 6:-16030334 MsG0680031204.01.T01:intron
GAGGGAGTATACCTTAGTGA+TGG 0.593860 6:+16030323 None:intergenic
AAGTGCACCCATTCTACAGA+TGG 0.605114 6:-16027290 MsG0680031204.01.T01:CDS
GCATCTGAATATGTGAGGCA+AGG 0.616649 6:+16028189 None:intergenic
TGAGGATGAACAGAAACAAG+TGG 0.632231 6:+16030501 None:intergenic
GCCATGCCAATGATAGCAAG+AGG 0.632297 6:+16028729 None:intergenic
ACAGTGGAACCGGTGACCGG+AGG 0.637885 6:+16030551 None:intergenic
GTTGAAGAGGAGGAAGACAG+TGG 0.646633 6:+16030535 None:intergenic
TGTAAGCATCTGAATATGTG+AGG 0.654235 6:+16028184 None:intergenic
CCATGCCAATGATAGCAAGA+GGG 0.670916 6:+16028730 None:intergenic
GGATGAACAACATTTAGAGG+AGG 0.694837 6:-16027732 MsG0680031204.01.T01:CDS
TGTTACCAGATTTCGCTATG+GGG 0.695795 6:-16027753 MsG0680031204.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAAAAGATAATGAAAA+AGG + Chr6:16027184-16027203 None:intergenic 10.0%
!!! TTTTTCATTATCTTTTTTTA+AGG - Chr6:16027183-16027202 MsG0680031204.01.T01:intron 10.0%
!!! TTTTTTTTTTTTTTTTGACA+TGG + Chr6:16029494-16029513 None:intergenic 10.0%
!! AAAATTTCATAACTAATAGT+TGG - Chr6:16028464-16028483 MsG0680031204.01.T01:intron 15.0%
!! AAATAATTCAATAAAATGAG+AGG + Chr6:16029820-16029839 None:intergenic 15.0%
!! AAATTTCATAACTAATAGTT+GGG - Chr6:16028465-16028484 MsG0680031204.01.T01:intron 15.0%
!! AAGATAAACTAAAGTTAAAT+TGG - Chr6:16027468-16027487 MsG0680031204.01.T01:intron 15.0%
!! CATATTTCAAACAAATAAAA+GGG + Chr6:16028652-16028671 None:intergenic 15.0%
!! GTTTATTTAATCTTATCTTA+TGG + Chr6:16028330-16028349 None:intergenic 15.0%
!!! ATTCTTCATATTGTTTTAAT+TGG - Chr6:16029228-16029247 MsG0680031204.01.T01:intron 15.0%
!!! CAATTTTCTCAAATTATTTA+CGG - Chr6:16029142-16029161 MsG0680031204.01.T01:intron 15.0%
!!! TTATTGAATTATTTTCCAAA+TGG - Chr6:16029826-16029845 MsG0680031204.01.T01:intron 15.0%
!! AATAAATTGTTTATCCAAAC+AGG + Chr6:16027375-16027394 None:intergenic 20.0%
!! ATAAATATTGAAGTTGCATT+TGG + Chr6:16028306-16028325 None:intergenic 20.0%
!! ATAAATTGTTTATCCAAACA+GGG + Chr6:16027374-16027393 None:intergenic 20.0%
!! GCATATTTCAAACAAATAAA+AGG + Chr6:16028653-16028672 None:intergenic 20.0%
!! GTTTATTGTTAAATGAGTTT+GGG - Chr6:16028194-16028213 MsG0680031204.01.T01:CDS 20.0%
!! TAAATATTGAAGTTGCATTT+GGG + Chr6:16028305-16028324 None:intergenic 20.0%
!! TAATAATATGCCTATATCTT+AGG - Chr6:16030595-16030614 MsG0680031204.01.T01:exon 20.0%
!! TGTTTATTGTTAAATGAGTT+TGG - Chr6:16028193-16028212 MsG0680031204.01.T01:CDS 20.0%
!!! AATTTTATGCATATAAAGCA+AGG + Chr6:16028450-16028469 None:intergenic 20.0%
!!! TTTATTTGTTTGAAATATGC+AGG - Chr6:16028653-16028672 MsG0680031204.01.T01:intron 20.0%
! AAGTTATAAACTACTTGAAG+TGG + Chr6:16027958-16027977 None:intergenic 25.0%
! AATAACTTACTAGACCATAT+TGG + Chr6:16029787-16029806 None:intergenic 25.0%
! ACAAGATGGAAAATATTGTT+TGG - Chr6:16030622-16030641 MsG0680031204.01.T01:five_prime_UTR 25.0%
! ACTTTAAGTGATTAGAAGAA+AGG + Chr6:16029672-16029691 None:intergenic 25.0%
! AGCTTATCAAATAACATTAC+AGG - Chr6:16027799-16027818 MsG0680031204.01.T01:intron 25.0%
! AGGGAAAAAAGAAAAACATA+AGG + Chr6:16028633-16028652 None:intergenic 25.0%
! ATAGTGAAGTTTGTATGAAA+AGG - Chr6:16028060-16028079 MsG0680031204.01.T01:intron 25.0%
! ATTATCTGCTTTATGTTTCA+GGG - Chr6:16030146-16030165 MsG0680031204.01.T01:intron 25.0%
! ATTATTAGACAAGATCAACT+AGG + Chr6:16030582-16030601 None:intergenic 25.0%
! TATTATCTGCTTTATGTTTC+AGG - Chr6:16030145-16030164 MsG0680031204.01.T01:intron 25.0%
! TCTGCTATAATGTTAACATA+TGG - Chr6:16028721-16028740 MsG0680031204.01.T01:intron 25.0%
! TGATTGTATATCAATGAAGA+AGG + Chr6:16028600-16028619 None:intergenic 25.0%
! TTAAAGAGAAGAATCACATA+AGG - Chr6:16029617-16029636 MsG0680031204.01.T01:intron 25.0%
! TTATACAAACTTCAGTACAT+AGG + Chr6:16028011-16028030 None:intergenic 25.0%
! TTATTAGACAAGATCAACTA+GGG + Chr6:16030581-16030600 None:intergenic 25.0%
! TTCAGTACATAGGTAAAATT+GGG + Chr6:16028001-16028020 None:intergenic 25.0%
! TTTCTTCTAATCACTTAAAG+TGG - Chr6:16029671-16029690 MsG0680031204.01.T01:intron 25.0%
!! AAAGTTTTCATGCTTATGAA+TGG - Chr6:16028420-16028439 MsG0680031204.01.T01:intron 25.0%
!! GCATTCAAATAACATCATTT+TGG + Chr6:16026893-16026912 None:intergenic 25.0%
!! GTTGATAAATTAGCTTATAG+CGG - Chr6:16027279-16027298 MsG0680031204.01.T01:CDS 25.0%
!! TAATGAGTTGGATAGTAATA+TGG - Chr6:16030457-16030476 MsG0680031204.01.T01:CDS 25.0%
!! TCAATTTTGCAGATTTCATT+CGG - Chr6:16028516-16028535 MsG0680031204.01.T01:intron 25.0%
!!! ATAAGTTTTGTTAGACTGTT+TGG + Chr6:16027562-16027581 None:intergenic 25.0%
!!! CTTACATAAGCTATTTCTAT+AGG - Chr6:16027443-16027462 MsG0680031204.01.T01:intron 25.0%
!!! GTTGATGTTGTTTTAGTATA+TGG - Chr6:16030550-16030569 MsG0680031204.01.T01:CDS 25.0%
!!! TAAGTTTTGTTAGACTGTTT+GGG + Chr6:16027561-16027580 None:intergenic 25.0%
!!! TCTTTTTTTAAGGCTATGTT+TGG - Chr6:16027193-16027212 MsG0680031204.01.T01:intron 25.0%
ACAATAAACAACACGTGTAA+CGG + Chr6:16028183-16028202 None:intergenic 30.0%
AGATAATGAAAAAGGAACTG+AGG + Chr6:16027176-16027195 None:intergenic 30.0%
AGATCATTTGAAAGAGCTTA+CGG + Chr6:16029955-16029974 None:intergenic 30.0%
AGATCTAGAGATTAATGAGT+TGG - Chr6:16030445-16030464 MsG0680031204.01.T01:CDS 30.0%
ATGTGAATCAAGTTATACGA+TGG - Chr6:16028797-16028816 MsG0680031204.01.T01:CDS 30.0%
ATTCATCTTAAAGGTCTGAT+TGG + Chr6:16029896-16029915 None:intergenic 30.0%
CAGATTACCTGTTTAAGAAT+AGG + Chr6:16029342-16029361 None:intergenic 30.0%
CTAGAACCAATTCATCTTAA+AGG + Chr6:16029905-16029924 None:intergenic 30.0%
CTCAATGATAAAATACACAC+AGG + Chr6:16028399-16028418 None:intergenic 30.0%
CTTAGCATGAAAACATGAAA+TGG + Chr6:16027004-16027023 None:intergenic 30.0%
CTTCAGTACATAGGTAAAAT+TGG + Chr6:16028002-16028021 None:intergenic 30.0%
GAAGATATCAGAAAGTAGTA+AGG + Chr6:16030055-16030074 None:intergenic 30.0%
GATAATGAAAAAGGAACTGA+GGG + Chr6:16027175-16027194 None:intergenic 30.0%
GCATACTTTAATATTCTTCC+TGG - Chr6:16028688-16028707 MsG0680031204.01.T01:intron 30.0%
GTCAACATTAGAGATAGATT+TGG - Chr6:16030256-16030275 MsG0680031204.01.T01:intron 30.0%
GTCAATCTAAATAGACCTTT+AGG - Chr6:16030010-16030029 MsG0680031204.01.T01:intron 30.0%
TGGAAAATATTGTTTGGTCT+TGG - Chr6:16030628-16030647 MsG0680031204.01.T01:five_prime_UTR 30.0%
TTGTATATCAATGAAGAAGG+TGG + Chr6:16028597-16028616 None:intergenic 30.0%
! AGCTTTTCTTCAAAAGCAAT+AGG - Chr6:16027022-16027041 MsG0680031204.01.T01:intron 30.0%
! ATAAATTAGCTTATAGCGGA+TGG - Chr6:16027283-16027302 MsG0680031204.01.T01:CDS 30.0%
! ATGACTAAAAAAGACTTGCT+TGG + Chr6:16027867-16027886 None:intergenic 30.0%
! GCTTATCAAAAACTGTTTTC+GGG + Chr6:16027936-16027955 None:intergenic 30.0%
! GGCTTATCAAAAACTGTTTT+CGG + Chr6:16027937-16027956 None:intergenic 30.0%
! TGGCTCTTTTATGCTTTTAT+AGG - Chr6:16029691-16029710 MsG0680031204.01.T01:intron 30.0%
! TTGTTTGAAATATGCAGGTA+TGG - Chr6:16028658-16028677 MsG0680031204.01.T01:intron 30.0%
!! ATCAGACCTTTAAGATGAAT+TGG - Chr6:16029896-16029915 MsG0680031204.01.T01:intron 30.0%
!! ATGTCTTTTGAGAAACATAG+AGG + Chr6:16029542-16029561 None:intergenic 30.0%
!! TAAATAGACCTTTAGGATGA+AGG - Chr6:16030017-16030036 MsG0680031204.01.T01:intron 30.0%
!! TGAAAACATGAAATGGATTG+AGG + Chr6:16026997-16027016 None:intergenic 30.0%
!! TGTCTTTTGAGAAACATAGA+GGG + Chr6:16029541-16029560 None:intergenic 30.0%
!! TTGAAACGGATTTTCCAATA+TGG - Chr6:16029770-16029789 MsG0680031204.01.T01:intron 30.0%
!!! CAATAGGTTTAGTTTTGTTC+CGG - Chr6:16027038-16027057 MsG0680031204.01.T01:intron 30.0%
!!! TCTTTTACATTTCTAGCAGT+TGG - Chr6:16029428-16029447 MsG0680031204.01.T01:intron 30.0%
!!! TTTTTTAAGGCTATGTTTGG+TGG - Chr6:16027196-16027215 MsG0680031204.01.T01:intron 30.0%
AAGAAGAGTAGATCAAATGC+AGG - Chr6:16030363-16030382 MsG0680031204.01.T01:CDS 35.0%
ACAAGTGTCCTACTATCAAT+TGG + Chr6:16027117-16027136 None:intergenic 35.0%
ACACGTAATCTCAAATTTGG+CGG - Chr6:16026788-16026807 MsG0680031204.01.T01:CDS 35.0%
ACGACACGTAATCTCAAATT+TGG - Chr6:16026785-16026804 MsG0680031204.01.T01:CDS 35.0%
ACTTATTAGAGCTTATCTGC+TGG + Chr6:16029869-16029888 None:intergenic 35.0%
AGAAGAGTAGATCAAATGCA+GGG - Chr6:16030364-16030383 MsG0680031204.01.T01:CDS 35.0%
AGCACCTATAGTAGAATAGA+TGG - Chr6:16030282-16030301 MsG0680031204.01.T01:intron 35.0%
ATAACTGATTGAACCCTGTT+TGG - Chr6:16027358-16027377 MsG0680031204.01.T01:intron 35.0%
ATATCTTAGGTCACACAAGA+TGG - Chr6:16030608-16030627 MsG0680031204.01.T01:five_prime_UTR 35.0%
ATATTCTTCCTGGATCTGAA+TGG - Chr6:16028698-16028717 MsG0680031204.01.T01:intron 35.0%
ATCTAGATAATGCAGCTGTA+TGG + Chr6:16030080-16030099 None:intergenic 35.0%
ATGTTACCAGATTTCGCTAT+GGG - Chr6:16029723-16029742 MsG0680031204.01.T01:intron 35.0%
CACATATTCATTGAGTAGTC+TGG - Chr6:16028261-16028280 MsG0680031204.01.T01:intron 35.0%
CTGACCATCTATTCTACTAT+AGG + Chr6:16030289-16030308 None:intergenic 35.0%
CTTTAATAGCCAATCCAAAC+AGG - Chr6:16027595-16027614 MsG0680031204.01.T01:intron 35.0%
TAGAATAGATGGTCAGAACT+AGG - Chr6:16030293-16030312 MsG0680031204.01.T01:intron 35.0%
TCTGCATACTGCAAAAATGA+CGG + Chr6:16029255-16029274 None:intergenic 35.0%
TCTTGTGTGACCTAAGATAT+AGG + Chr6:16030608-16030627 None:intergenic 35.0%
TGATGAAATCTCCATCACTA+AGG - Chr6:16027143-16027162 MsG0680031204.01.T01:intron 35.0%
TGCAACTCCTATTCTTAAAC+AGG - Chr6:16029332-16029351 MsG0680031204.01.T01:intron 35.0%
TGCTTTATGTTTCAGGGAAA+TGG - Chr6:16030152-16030171 MsG0680031204.01.T01:intron 35.0%
TGTAAGCATCTGAATATGTG+AGG + Chr6:16029296-16029315 None:intergenic 35.0%
TTTGTTTCAGACACAGCAAA+AGG + Chr6:16026854-16026873 None:intergenic 35.0%
! ACTCTCGAAATCTAGCTTAA+TGG - Chr6:16028221-16028240 MsG0680031204.01.T01:intron 35.0%
! ATGTTGTGACACTCTTTTCT+TGG - Chr6:16029578-16029597 MsG0680031204.01.T01:intron 35.0%
! CAAATTATTTACGGTGTCGA+CGG - Chr6:16029151-16029170 MsG0680031204.01.T01:intron 35.0%
! GAAATATGCAGGTATGGTTT+TGG - Chr6:16028664-16028683 MsG0680031204.01.T01:intron 35.0%
! TTCTTTGTGGTTCTATGCAT+TGG - Chr6:16029017-16029036 MsG0680031204.01.T01:intron 35.0%
!! AAGTTTTATCCCGCTAAGTA+GGG + Chr6:16030526-16030545 None:intergenic 35.0%
!! ATTTAGAGGAGGCATTGAAA+CGG - Chr6:16029756-16029775 MsG0680031204.01.T01:intron 35.0%
!! GGTATGAGTTATTGATTCTC+AGG - Chr6:16028486-16028505 MsG0680031204.01.T01:intron 35.0%
!! TATAGCGGATGGACTTATAA+CGG - Chr6:16027294-16027313 MsG0680031204.01.T01:CDS 35.0%
!!! TAAGCACTTTTGAGACCATT+TGG + Chr6:16029844-16029863 None:intergenic 35.0%
AACTTACACAATGCCGGAAT+AGG - Chr6:16028117-16028136 MsG0680031204.01.T01:intron 40.0%
AGAACTAGGCTTACGTAGTT+TGG - Chr6:16030307-16030326 MsG0680031204.01.T01:intron 40.0%
ATCCAGAACTTACACAATGC+CGG - Chr6:16028111-16028130 MsG0680031204.01.T01:intron 40.0%
CAGATTTCATTCGGTACGAT+TGG - Chr6:16028525-16028544 MsG0680031204.01.T01:intron 40.0%
CTACTTAGCGGGATAAAACT+TGG - Chr6:16030525-16030544 MsG0680031204.01.T01:CDS 40.0%
GATGTTACCAGATTTCGCTA+TGG - Chr6:16029722-16029741 MsG0680031204.01.T01:intron 40.0%
GCTGCATTATCTAGATACTG+AGG - Chr6:16030084-16030103 MsG0680031204.01.T01:intron 40.0%
GGATCGACACTTCAAATTGA+AGG + Chr6:16028981-16029000 None:intergenic 40.0%
GGATGAACAACATTTAGAGG+AGG - Chr6:16029745-16029764 MsG0680031204.01.T01:intron 40.0%
TCACGAACCATCTGTAGAAT+GGG + Chr6:16030197-16030216 None:intergenic 40.0%
TGAGGATGAACAGAAACAAG+TGG + Chr6:16026979-16026998 None:intergenic 40.0%
TGATGTGTCCATACCTATTC+CGG + Chr6:16028133-16028152 None:intergenic 40.0%
TGCTACAGATAAAGAGTCCA+TGG + Chr6:16029065-16029084 None:intergenic 40.0%
TGGGGATGAACAACATTTAG+AGG - Chr6:16029742-16029761 MsG0680031204.01.T01:intron 40.0%
TGTTACCAGATTTCGCTATG+GGG - Chr6:16029724-16029743 MsG0680031204.01.T01:intron 40.0%
TTCACGAACCATCTGTAGAA+TGG + Chr6:16030198-16030217 None:intergenic 40.0%
TTTGTGAGAGCTTGTGAAGA+TGG + Chr6:16028160-16028179 None:intergenic 40.0%
! CTGGTGTTCCAATTGATAGT+AGG - Chr6:16027106-16027125 MsG0680031204.01.T01:intron 40.0%
! CTTTTGCTCCTTCATCCTAA+AGG + Chr6:16030028-16030047 None:intergenic 40.0%
! GTCAGATTTTGAACAGAGAC+AGG - Chr6:16030676-16030695 MsG0680031204.01.T01:five_prime_UTR 40.0%
! GTGATGGAGATTTCATCATC+AGG + Chr6:16027141-16027160 None:intergenic 40.0%
! TCTGAAGCACTACACAGATA+CGG + Chr6:16029198-16029217 None:intergenic 40.0%
!! AAACTGTTTTCGGGACTGTT+TGG + Chr6:16027927-16027946 None:intergenic 40.0%
!! CAAGTTTTATCCCGCTAAGT+AGG + Chr6:16030527-16030546 None:intergenic 40.0%
!!! GTGGTTCTATGCATTGGTTT+TGG - Chr6:16029023-16029042 MsG0680031204.01.T01:intron 40.0%
!!! GTTTTGGCTGATACTCTTCT+GGG - Chr6:16029039-16029058 MsG0680031204.01.T01:intron 40.0%
!!! TTGTTTGGTCTTGGTTTTCG+AGG - Chr6:16030637-16030656 MsG0680031204.01.T01:five_prime_UTR 40.0%
AAGAAACCGCACGAACAAGT+AGG + Chr6:16029002-16029021 None:intergenic 45.0%
AAGTGCACCCATTCTACAGA+TGG - Chr6:16030187-16030206 MsG0680031204.01.T01:intron 45.0%
ACACAATGCCGGAATAGGTA+TGG - Chr6:16028122-16028141 MsG0680031204.01.T01:intron 45.0%
ACAGCTTCTCAGTCTTCTTC+TGG - Chr6:16027087-16027106 MsG0680031204.01.T01:intron 45.0%
ACAGGCTTGTAGTGTTTGGT+AGG - Chr6:16027613-16027632 MsG0680031204.01.T01:intron 45.0%
AGAATGGGTGCACTTCTTCT+GGG + Chr6:16030182-16030201 None:intergenic 45.0%
ATAGCAGACCATTCAGATCC+AGG + Chr6:16028709-16028728 None:intergenic 45.0%
ATGTAGCTGACCCTACTTAG+CGG - Chr6:16030513-16030532 MsG0680031204.01.T01:CDS 45.0%
CACTACAAGCCTGTTTGGAT+TGG + Chr6:16027607-16027626 None:intergenic 45.0%
CAGGGTAGTCAAATCACTAG+AGG - Chr6:16030382-16030401 MsG0680031204.01.T01:CDS 45.0%
CATTTGTCTGTGTCGTGTGT+TGG + Chr6:16029103-16029122 None:intergenic 45.0%
CCAAACACTACAAGCCTGTT+TGG + Chr6:16027612-16027631 None:intergenic 45.0%
CCAAACAGGCTTGTAGTGTT+TGG - Chr6:16027609-16027628 MsG0680031204.01.T01:intron 45.0%
CCATGCCAATGATAGCAAGA+GGG + Chr6:16028750-16028769 None:intergenic 45.0%
GAAGAATCAGCAGCTCTTAC+CGG + Chr6:16027060-16027079 None:intergenic 45.0%
GAATATGTGAGGCAAGGTAC+TGG + Chr6:16029285-16029304 None:intergenic 45.0%
GCATCTGAATATGTGAGGCA+AGG + Chr6:16029291-16029310 None:intergenic 45.0%
GGTACGATTGGACTAAGTCT+TGG - Chr6:16028537-16028556 MsG0680031204.01.T01:intron 45.0%
TAGAATGGGTGCACTTCTTC+TGG + Chr6:16030183-16030202 None:intergenic 45.0%
TATCATTGGCATGGCACTCA+AGG - Chr6:16028756-16028775 MsG0680031204.01.T01:CDS 45.0%
TCTACAGATGGTTCGTGAAG+AGG - Chr6:16030199-16030218 MsG0680031204.01.T01:intron 45.0%
TTCATCCCCATAGCGAAATC+TGG + Chr6:16029732-16029751 None:intergenic 45.0%
TTCCGGCATTGTGTAAGTTC+TGG + Chr6:16028116-16028135 None:intergenic 45.0%
TTGTTCGTGCGGTTTCTTTG+TGG - Chr6:16029004-16029023 MsG0680031204.01.T01:intron 45.0%
! GACTTTGTGAGTTGAAGAGG+AGG + Chr6:16026955-16026974 None:intergenic 45.0%
! GAGGGAGTATACCTTAGTGA+TGG + Chr6:16027157-16027176 None:intergenic 45.0%
! GGAGACTTTGTGAGTTGAAG+AGG + Chr6:16026958-16026977 None:intergenic 45.0%
! GGTTTCCCTCTTGCTATCAT+TGG - Chr6:16028742-16028761 MsG0680031204.01.T01:CDS 45.0%
!!! GGTTTTGGCTGATACTCTTC+TGG - Chr6:16029038-16029057 MsG0680031204.01.T01:intron 45.0%
ACCGACACGATTCGTACACT+CGG - Chr6:16028950-16028969 MsG0680031204.01.T01:CDS 50.0%
GAATGGGTGCACTTCTTCTG+GGG + Chr6:16030181-16030200 None:intergenic 50.0%
GCCATGCCAATGATAGCAAG+AGG + Chr6:16028751-16028770 None:intergenic 50.0%
GCTAAGTAGGGTCAGCTACA+TGG + Chr6:16030514-16030533 None:intergenic 50.0%
GTCGATCCTACTTGTTCGTG+CGG - Chr6:16028993-16029012 MsG0680031204.01.T01:intron 50.0%
GTTGAAGAGGAGGAAGACAG+TGG + Chr6:16026945-16026964 None:intergenic 50.0%
TCCGAGTGTACGAATCGTGT+CGG + Chr6:16028954-16028973 None:intergenic 50.0%
TGTAGCTGACCCTACTTAGC+GGG - Chr6:16030514-16030533 MsG0680031204.01.T01:CDS 50.0%
TGTCTGTGCCATACGAGTGT+CGG - Chr6:16028925-16028944 MsG0680031204.01.T01:CDS 50.0%
! CCCTCTTGCTATCATTGGCA+TGG - Chr6:16028747-16028766 MsG0680031204.01.T01:CDS 50.0%
!! GGTCTTGGTTTTCGAGGCTA+AGG - Chr6:16030643-16030662 MsG0680031204.01.T01:five_prime_UTR 50.0%
AAGACAGTGGAACCGGTGAC+CGG + Chr6:16026932-16026951 None:intergenic 55.0%
GAGGAGGAAGACAGTGGAAC+CGG + Chr6:16026939-16026958 None:intergenic 55.0%
GCTGATACTCTTCTGGGCCA+TGG - Chr6:16029045-16029064 MsG0680031204.01.T01:intron 55.0%
GTCGGTCTCCGACACTCGTA+TGG + Chr6:16028936-16028955 None:intergenic 60.0%
TGCAAAGCCGTGTCCTCCTC+CGG - Chr6:16026910-16026929 MsG0680031204.01.T01:intron 60.0%
! GTGTCGACGGTGTCAGTGTC+AGG - Chr6:16029164-16029183 MsG0680031204.01.T01:intron 60.0%
ACAGTGGAACCGGTGACCGG+AGG + Chr6:16026929-16026948 None:intergenic 65.0%
CCGGTGACCGGAGGAGGACA+CGG + Chr6:16026920-16026939 None:intergenic 70.0%
CCGTGTCCTCCTCCGGTCAC+CGG - Chr6:16026917-16026936 MsG0680031204.01.T01:intron 70.0%
GTGGAACCGGTGACCGGAGG+AGG + Chr6:16026926-16026945 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr6 gene 16026760 16030739 16026760 ID=MsG0680031204.01;Name=MsG0680031204.01
Chr6 mRNA 16026760 16030739 16026760 ID=MsG0680031204.01.T01;Parent=MsG0680031204.01;Name=MsG0680031204.01.T01;_AED=0.48;_eAED=0.49;_QI=135|1|0.85|1|1|1|7|0|255
Chr6 exon 16026760 16026882 16026760 ID=MsG0680031204.01.T01:exon:10785;Parent=MsG0680031204.01.T01
Chr6 exon 16027279 16027332 16027279 ID=MsG0680031204.01.T01:exon:10784;Parent=MsG0680031204.01.T01
Chr6 exon 16027703 16027786 16027703 ID=MsG0680031204.01.T01:exon:10783;Parent=MsG0680031204.01.T01
Chr6 exon 16028146 16028232 16028146 ID=MsG0680031204.01.T01:exon:10782;Parent=MsG0680031204.01.T01
Chr6 exon 16028722 16028824 16028722 ID=MsG0680031204.01.T01:exon:10781;Parent=MsG0680031204.01.T01
Chr6 exon 16028925 16028971 16028925 ID=MsG0680031204.01.T01:exon:10780;Parent=MsG0680031204.01.T01
Chr6 exon 16030335 16030739 16030335 ID=MsG0680031204.01.T01:exon:10779;Parent=MsG0680031204.01.T01
Chr6 five_prime_UTR 16030605 16030739 16030605 ID=MsG0680031204.01.T01:five_prime_utr;Parent=MsG0680031204.01.T01
Chr6 CDS 16030335 16030604 16030335 ID=MsG0680031204.01.T01:cds;Parent=MsG0680031204.01.T01
Chr6 CDS 16028925 16028971 16028925 ID=MsG0680031204.01.T01:cds;Parent=MsG0680031204.01.T01
Chr6 CDS 16028722 16028824 16028722 ID=MsG0680031204.01.T01:cds;Parent=MsG0680031204.01.T01
Chr6 CDS 16028146 16028232 16028146 ID=MsG0680031204.01.T01:cds;Parent=MsG0680031204.01.T01
Chr6 CDS 16027703 16027786 16027703 ID=MsG0680031204.01.T01:cds;Parent=MsG0680031204.01.T01
Chr6 CDS 16027279 16027332 16027279 ID=MsG0680031204.01.T01:cds;Parent=MsG0680031204.01.T01
Chr6 CDS 16026760 16026882 16026760 ID=MsG0680031204.01.T01:cds;Parent=MsG0680031204.01.T01
Gene Sequence

>MsG0680031204.01.T01

ATGATGTTATTTGAATGCAAAGCCGTGTCCTCCTCCGGTCACCGGTTCCACTGTCTTCCTCCTCTTCAACTCACAAAGTCTCCACTTGTTTCTGTTCATCCTCAATCCATTTCATGTTTTCATGCTAAGCTTTTCTTCAAAAGCAATAGGTTTAGTTTTGTTCCGGTAAGAGCTGCTGATTCTTCAACTACTACAGCTTCTCAGTCTTCTTCTGGTGTTCCAATTGATAGTAGGACACTTGTTCCTGATGATGAAATCTCCATCACTAAGATTTCATTCGGTACGATTGGACTAAGTCTTGGAGTCTCACTCTTGTCGTATGGTTTTGGAGCATACTTTAATATTCTTCCTGGATCTGAATGGTCTGCTATAATGTTAACATATGGTTTCCCTCTTGCTATCATTGGCATGGCACTCAAGTATGCAGAACTCAAGCCAGTACCTTGCCTCACATATTCAGATGCTTACAAATTGCAAGAAAAATGTGCAACTCCTATTCTTAAACAGGTGAAGAGTGATGTTACCAGATTTCGCTATGGGGATGAACAACATTTAGAGGAGGCATTGAAACGGATTTTCCAATATGGTCTAGGAAATGGAATCCCCAGAAGAAGTGCACCCATTCTACAGATGGTTCGTGAAGAGGTCACACAAGATGGAAAATATTGTTTGGTCTTGGTTTTCGAGGCTAAGGCTCTAAAGTTGTCAGATTTTGAACAGAGACAGGTATTCAACTGCGCTTTCTTGAATACATTTTTAATTACTTAG

Protein sequence

>MsG0680031204.01.T01

MMLFECKAVSSSGHRFHCLPPLQLTKSPLVSVHPQSISCFHAKLFFKSNRFSFVPVRAADSSTTTASQSSSGVPIDSRTLVPDDEISITKISFGTIGLSLGVSLLSYGFGAYFNILPGSEWSAIMLTYGFPLAIIGMALKYAELKPVPCLTYSDAYKLQEKCATPILKQVKSDVTRFRYGDEQHLEEALKRIFQYGLGNGIPRRSAPILQMVREEVTQDGKYCLVLVFEAKALKLSDFEQRQVFNCAFLNTFLIT*